Citrus Sinensis ID: 025008

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLPSTKEDACAAAHVKFSSKFEKNRKDKRALINAASIFSGSSISSSKQLELEAKRRKINAGAASNMLTGAFKPSSWSQSSVPSSRHKRSSVSARQF
Secondary Structure (PSIPRED)
ccccEEccccccccccccccccccccccccccEEEEEEEEEccccccEEEEEcccccccEEcccccccccccccHHHHHHcccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccccEcccEEEccEEEEccccccccEEEEEEEEcccccEEEEEEccccccEEEEEccccccccccHHHcccEccccHHHHHHcccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccHHHHHHHHccccccccccccccccccccccEEEcccc
Coil and Loop (DISEMBL)
mpfniwcggcnsmiAKGVRFnaekkqvgnyYSTKIWsftmkspcckhqiviqtdpknceYVIISgaqrkteefdvedaetlelpadeergklsdpfyrlEHQEADLQKKKEAEPRLVQIQrisdgrfsdDYALNKALRAKLRSQRKRVTEEEAASRKLglglrllpstkedaCAAAHVKFSSKFEKNRKDKRALINAAsifsgssisssKQLELEAKRRKINAgaasnmltgafkpsswsqssvpssrhkrssvsarqf
Flexible Loop (DISEMBL)
MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGaqrkteefdvEDAEtlelpadeergklsdpfyRLEHQEAdlqkkkeaeprlvqiqrisdgrfsddyALNKALRAKlrsqrkrvteeeaasrklglglrllpstKEDACAAAHVkfsskfeknrkDKRALINaasifsgssissskQLELEAKRRKINAGaasnmltgafkpsswsqssvpssrhkrssvsarqf
Low Complexity Region (SEG)
MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLPSTKEDACAAAHVKFSSKFEKNRKDKRALINAAsifsgssisssKQLELEAKRRKINAGAASNMLTGAFKPsswsqssvpssrhkrssvsARQF
Disordered region (IsUnstruct)
**FNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGA*************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQ***************************************************IQRISDGRFSDDY********************************************************************************************************************************
Disordered Region (DISEMBL)
MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAK***************RKLGLGLRLLPSTKEDACAAAHVKFSSKFEKNRKDKRALINAASIFSGSSISSSKQLELEAKRRKINAGAASNMLTGAF*************************
Disordered Region (DISPRO)
MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLPSTKEDACAAAHVKFSSKFEKNRKDK*ALI**A*************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALxxxxxxxxxxxxxxxxxxxxxSRKLGLGLRLLPSTKEDACAAAHVKFSSKFEKNRKDKRALINAASIFSGSSISSSKQLELEAKRRKINAGAASNMLTGAFKPSSWSQSSVPSSRHKRSSVSARQF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q5EA37	400	Coiled-coil domain-contai	yes	no	0.783	0.507	0.454	8e-43
P13994	396	Coiled-coil domain-contai	yes	no	0.772	0.505	0.456	3e-42
Q32PZ9	385	Coiled-coil domain-contai	yes	no	0.806	0.542	0.440	2e-41
Q9D516	385	Coiled-coil domain-contai	yes	no	0.772	0.519	0.437	3e-40
Q66I85	390	Coiled-coil domain-contai	yes	no	0.776	0.515	0.425	5e-40
Q6DJK9	384	Coiled-coil domain-contai	N/A	no	0.776	0.523	0.430	1e-39
Q7K0F0	316	Coiled-coil domain-contai	yes	no	0.833	0.683	0.355	6e-31
Q54TR4	325	Coiled-coil domain-contai	yes	no	0.776	0.618	0.336	7e-29
Q09651	369	Coiled-coil domain-contai	yes	no	0.644	0.452	0.388	1e-27
O60141	299	Protein saf4 OS=Schizosac	yes	no	0.760	0.658	0.330	4e-24

>sp|Q5EA37|CC130_BOVIN Coiled-coil domain-containing protein 130 OS=Bos taurus GN=CCDC130 PE=2 SV=1

 Score =  174 bits (440), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 96/211 (45%), Positives = 129/211 (61%), Gaps = 8/211 (3%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+Y
Sbjct: 50  MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDY 109

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGKLS-DPFYRLEHQEADLQKKKEAEPRLVQI 119
           VI+SGAQRK E +D+ED E +     E++ KL  D  +RLEH EAD    K+A P L  I
Sbjct: 110 VIVSGAQRKEERWDMEDNEQVLTTEHEKKQKLEMDAMFRLEHGEADRSTLKKALPTLSHI 169

Query: 120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEE----AASRKLGLGLRLLPSTKEDACAA 175
           Q      + DD+ALN  LR + R ++K + EEE    A   K  L + L+P T++D   A
Sbjct: 170 QEAQSA-WKDDFALNSMLRKRFREKKKAMQEEEERDQALQAKASLAIPLVPETEDDRRLA 228

Query: 176 AHVKFSS--KFEKNRKDKRALINAASIFSGS 204
           A +KF +   +E  +K KR  I + S F  +
Sbjct: 229 ALLKFHTLDSYEDKQKLKRTEIISRSWFPST 259

Bos taurus (taxid: 9913)

>sp|P13994|CC130_HUMAN Coiled-coil domain-containing protein 130 OS=Homo sapiens GN=CCDC130 PE=1 SV=2

 Score =  172 bits (435), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 95/208 (45%), Positives = 128/208 (61%), Gaps = 8/208 (3%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+Y
Sbjct: 50  MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDY 109

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQI 119
           VI+SGAQRK E +D+ D E +     E++ KL +D  +RLEH EAD    K+A P L  I
Sbjct: 110 VIVSGAQRKEERWDMADNEQVLTTEHEKKQKLETDAMFRLEHGEADRSTLKKALPTLSHI 169

Query: 120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEE----AASRKLGLGLRLLPSTKEDACAA 175
           Q      + DD+ALN  LR + R ++K + EEE    A   K  L + L+P T++D   A
Sbjct: 170 QEAQSA-WKDDFALNSMLRRRFREKKKAIQEEEERDQALQAKASLTIPLVPETEDDRKLA 228

Query: 176 AHVKFSS--KFEKNRKDKRALINAASIF 201
           A +KF +   +E  +K KR  I + S F
Sbjct: 229 ALLKFHTLDSYEDKQKLKRTEIISRSWF 256

Homo sapiens (taxid: 9606)

>sp|Q32PZ9|CC130_RAT Coiled-coil domain-containing protein 130 OS=Rattus norvegicus GN=Ccdc130 PE=2 SV=1

 Score =  169 bits (429), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/220 (44%), Positives = 132/220 (60%), Gaps = 11/220 (5%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+Y
Sbjct: 50  MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDY 109

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQI 119
           VI+SGA RK E +D+ED E +     E++ KL +D  +RLEH EAD    K+A P L  I
Sbjct: 110 VIVSGASRKEERWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHI 169

Query: 120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEE----AASRKLGLGLRLLPSTKEDACAA 175
           Q   +  + DD+ALN  LR   R ++K + EEE    A   K  L + L+P +++D   A
Sbjct: 170 QEAQNA-WKDDFALNSMLRRHFREKKKAMQEEEEKDQALQAKANLAIPLVPESEDDRRLA 228

Query: 176 AHVKFSS--KFEKNRKDKRALINAASIFS---GSSISSSK 210
           A ++  +   +E  ++ KR  I   S F    G S SSSK
Sbjct: 229 ALLRLHTLDSYEDKQRMKRTEIIHRSWFPSAQGPSTSSSK 268

Rattus norvegicus (taxid: 10116)

>sp|Q9D516|CC130_MOUSE Coiled-coil domain-containing protein 130 OS=Mus musculus GN=Ccdc130 PE=2 SV=1

 Score =  165 bits (418), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 91/208 (43%), Positives = 126/208 (60%), Gaps = 8/208 (3%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+Y
Sbjct: 50  MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDY 109

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQI 119
           VI+SGA RK E +D+ED E +     E++ KL +D  +RLEH EAD    K+A P L  I
Sbjct: 110 VIVSGASRKEERWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHI 169

Query: 120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEE----AASRKLGLGLRLLPSTKEDACAA 175
           Q   +  + DD+ALN  LR   R ++K + EEE    A   K  L + L+P +++D   A
Sbjct: 170 QEAQNA-WKDDFALNSMLRRHFREKKKAMQEEEEKDQALQAKASLAIPLVPESEDDRRLA 228

Query: 176 AHVKFSS--KFEKNRKDKRALINAASIF 201
           A ++  +   +E  ++ KR  I   S F
Sbjct: 229 ALLRLHTLDSYEDKQRMKRTEIIHRSWF 256

Mus musculus (taxid: 10090)

>sp|Q66I85|CC130_DANRE Coiled-coil domain-containing protein 130 homolog OS=Danio rerio GN=ccdc130 PE=2 SV=1

 Score =  164 bits (416), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 89/209 (42%), Positives = 129/209 (61%), Gaps = 8/209 (3%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP  C+Y
Sbjct: 50  MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPATCDY 109

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQI 119
           VI+SGAQRK E +D+ + E +      E+ KL +D  Y+L+H   D +K + A P L ++
Sbjct: 110 VIVSGAQRKEERWDMAENEQILTTERNEKEKLETDAMYKLDHGGKDKEKLRAAIPSLNEL 169

Query: 120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEE----AASRKLGLGLRLLPSTKEDACAA 175
           Q    G + DD+ LN ALR K R+++K + EEE    A   + GL + L+P  +ED   A
Sbjct: 170 QEHQSG-WKDDFQLNSALRRKFRTEKKVIAEEEEKDNAVRLRTGLSIPLVPEREEDKKLA 228

Query: 176 AHVKFSS--KFEKNRKDKRALINAASIFS 202
           + + F S   +E  ++ KR  I++ S F+
Sbjct: 229 SLLTFQSPDSYEDKKQWKRQEISSRSWFN 257

Danio rerio (taxid: 7955)

>sp|Q6DJK9|CC130_XENLA Coiled-coil domain-containing protein 130 OS=Xenopus laevis GN=ccdc130 PE=2 SV=1

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/209 (43%), Positives = 133/209 (63%), Gaps = 8/209 (3%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP +C+Y
Sbjct: 50  MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPASCDY 109

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQI 119
           VI+SGAQRK E +D++D E +     E++ +L +D  +RLEH   D  K + A P L ++
Sbjct: 110 VIVSGAQRKEERWDMQDNEQILTTEHEQKQRLETDSMFRLEHGVQDKAKLQRAAPSLSEL 169

Query: 120 QRISDGRFSDDYALNKALRAKLRSQRKRVTE----EEAASRKLGLGLRLLPSTKEDACAA 175
           Q +    + DD+A+N  LR+K R ++K++ E    ++A   K  L L+L+P  +ED   A
Sbjct: 170 QEVQSA-WKDDFAINSLLRSKFREEKKQIKEEEERDQALLTKASLDLKLVPEVEEDKKIA 228

Query: 176 AHVKFSS--KFEKNRKDKRALINAASIFS 202
           A +K+ S   +E+ +K KR+ I   S FS
Sbjct: 229 ALLKYRSLESYEQKQKKKRSEICNRSWFS 257

Xenopus laevis (taxid: 8355)

>sp|Q7K0F0|CC130_DROME Coiled-coil domain-containing protein 130 homolog OS=Drosophila melanogaster GN=CG15084 PE=2 SV=1

 Score =  134 bits (337), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 125/228 (54%), Gaps = 12/228 (5%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MP+NIWC GC + I  GVR+NAEK +VG YY+T ++ F MK   C +   IQTDP N +Y
Sbjct: 49  MPYNIWCDGCKNHIGMGVRYNAEKTKVGMYYTTPVFKFRMKCHLCDNHFEIQTDPGNLDY 108

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGK--LSDPFYRLEHQEADLQKKKEAEPRLVQ 118
           VI+SGA+R+   +D    E + +P  +E  K    D  Y+LEHQ  D +   +A P L +
Sbjct: 109 VILSGARRQENRWDPLQNEQV-VPETKEVQKRLFDDAMYKLEHQAKDAKAGADARPVLQK 167

Query: 119 IQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKL----GLGLRLLPSTKEDACA 174
           +   +   + D Y  N  LRA+ R Q+K +  ++   R+L     L + LLP T +D   
Sbjct: 168 LVERNMSVWDDSYMANSRLRAEFRQQKKEINGQQELDRQLLAKSSLDIALLPETTQDREM 227

Query: 175 AAHVKFSSKFEKNRK-DKRALINAASIFSGSSISSSKQLELEAKRRKI 221
           AA +K  +K    R+ ++R  +       G+++++   L    KR+K+
Sbjct: 228 AALMKLQTKSALERESEQRLELLMRPALPGATVTTFGGL----KRQKV 271

Drosophila melanogaster (taxid: 7227)

>sp|Q54TR4|CC130_DICDI Coiled-coil domain-containing protein 130 homolog OS=Dictyostelium discoideum GN=DDB_G0281599 PE=3 SV=1

 Score =  127 bits (319), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 22/223 (9%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MPF++WC GC   I  GVRFNAEKK V  Y+++ I+SF MK   C +Q  IQ DPKN +Y
Sbjct: 49  MPFSVWCLGCECHIGMGVRFNAEKKTVDKYFTSNIYSFKMKCHQCSNQFEIQNDPKNTDY 108

Query: 61  VIISGAQRKTEEFDVEDAETLELPAD--------------EERGKLSDPFYRLEHQEADL 106
            +ISG +++ E+F+ ED+   ELP+                     +D   +LE+++ D+
Sbjct: 109 KLISGLKKRIEQFNPEDS---ELPSSFIIKYDDNNNNNNNNNNNDNNDTLLKLENKKLDI 165

Query: 107 QKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLP 166
           +K K+   +L ++Q I   R  +DY L+  +R   R ++K    E    +  G+ + LL 
Sbjct: 166 EKGKKESTQLEKLQEIMTNRTINDYQLSSIMRKSFREKKKEDQIELERQKSKGIMIPLLK 225

Query: 167 STKEDACAAAHVKFSS-----KFEKNRKDKRALINAASIFSGS 204
             ++D   A  + F+S     K +++ K KR LI   SI   +
Sbjct: 226 ENQDDIDTAKDIDFNSNSLKRKLDESNKLKRELIKNESILKST 268

Dictyostelium discoideum (taxid: 44689)

>sp|Q09651|CC130_CAEEL Coiled-coil domain-containing protein 130 homolog OS=Caenorhabditis elegans GN=ZK1307.9 PE=1 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 104/180 (57%), Gaps = 13/180 (7%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MPFNIWC GC++ +  GVR+NAEKK++G YY+T +  F MK   C +  VI+TDPKN +Y
Sbjct: 50  MPFNIWCLGCHNHVGMGVRYNAEKKKIGMYYTTPLHEFRMKCHLCDNYYVIRTDPKNFDY 109

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERG---KL-SDPFYRLEHQEADLQKKKEAEPRL 116
            ++ G  R+   FD  D   +      +RG   KL +D  ++ EH+  D  K    E R+
Sbjct: 110 ELVEGCSRQELRFDPTDIAQI---GAVDRGFTQKLAADAMFKKEHEAEDKDKAATEEGRV 166

Query: 117 VQIQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAAS----RKLGLG-LRLLPSTKED 171
            +++ I + R  DD+  N  LRA+ R+++K + E  A       KL +G  +LLP T+ED
Sbjct: 167 DKLEWIQE-RMRDDFTANSFLRAQFRNEKKSLNETRARDANLRDKLSIGTTQLLPETEED 225

Caenorhabditis elegans (taxid: 6239)

>sp|O60141|CWC16_SCHPO Protein saf4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=saf4 PE=3 SV=2

 Score =  111 bits (278), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 15/212 (7%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MPF +WC  C ++I +G RFNA KK++G+YY+TKIWSF++K   C + I + TDPKN EY
Sbjct: 32  MPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVHTDPKNTEY 91

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGK--LSDPFYRLEHQEADLQKKKEAEPRLVQ 118
           ++ SG +RK E  D+      E PA  E  +   SD    LE Q    + +K     +  
Sbjct: 92  IVASGGRRKIEPQDIN-----ERPAKAENDEKVPSDAIEALETQLTQQKSEKHNSSVINF 146

Query: 119 IQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKL----GLGLRLLPSTKEDACA 174
           I   ++  +SD +  ++ LR + R ++K   ++EA    L     L + +LP +  D   
Sbjct: 147 IYEKNERLWSDPFVSSQRLRKQFRERKKIEKKQEAKDLSLKNRAALDIDILPPSSSDKDK 206

Query: 175 AAHVKFS----SKFEKNRKDKRALINAASIFS 202
           A  +  +    +KF +    +R L+ ++  FS
Sbjct: 207 ALLLLDNELGKNKFIRKLDYRRTLMPSSRTFS 238

May be involved in mRNA splicing.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
224099305	313	predicted protein [Populus trichocarpa]	0.996	0.824	0.796	1e-121
224111744	313	predicted protein [Populus trichocarpa]	1.0	0.827	0.801	1e-119
255566831	310	Coiled-coil domain-containing protein, p	0.976	0.816	0.808	1e-118
449434666	313	PREDICTED: coiled-coil domain-containing	1.0	0.827	0.740	1e-111
357443113	312	Coiled-coil domain-containing protein [M	0.996	0.826	0.758	1e-111
297737874	885	unnamed protein product [Vitis vinifera]	1.0	0.292	0.774	1e-111
217073208	312	unknown [Medicago truncatula]	0.996	0.826	0.754	1e-111
225423863	313	PREDICTED: coiled-coil domain-containing	1.0	0.827	0.774	1e-110
388501286	310	unknown [Lotus japonicus]	0.996	0.832	0.749	1e-107
356496002	306	PREDICTED: coiled-coil domain-containing	0.953	0.807	0.750	1e-107

>gi|224099305|ref|XP_002311431.1| predicted protein [Populus trichocarpa] gi|222851251|gb|EEE88798.1| predicted protein [Populus trichocarpa]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/261 (79%), Positives = 238/261 (91%), Gaps = 3/261 (1%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKS CCKH+IVI TDPKNCEY
Sbjct: 52  MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSACCKHEIVIHTDPKNCEY 111

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQ 120
           VIISGAQRK EEFDVEDAET  LPADEE+GKLSDPFYRLEHQE DLQKKKEAEP LV++Q
Sbjct: 112 VIISGAQRKNEEFDVEDAETFALPADEEKGKLSDPFYRLEHQEEDLQKKKEAEPVLVRLQ 171

Query: 121 RISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLPSTKEDACAAAHVKF 180
           R+SD R SDDYALNKALRA++RS +KRV EEE+ SRK+GLG+RLLP+T+EDA +AAHVKF
Sbjct: 172 RVSDARHSDDYALNKALRARMRSHKKRVAEEESTSRKMGLGIRLLPATEEDAVSAAHVKF 231

Query: 181 SSKFEKNRKDKRALINAASIF---SGSSISSSKQLELEAKRRKINAGAASNMLTGAFKPS 237
           SSKF+KNRKDKRALI+AASIF   SGSS+S+ K+LELE+KRRKI+A AA+N+LTG FKPS
Sbjct: 232 SSKFDKNRKDKRALISAASIFPGSSGSSMSNKKRLELESKRRKISAAAATNLLTGGFKPS 291

Query: 238 SWSQSSVPSSRHKRSSVSARQ 258
           SWSQ +V  S+ K++S++AR+
Sbjct: 292 SWSQGTVSCSKRKQNSMNARR 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111744|ref|XP_002315962.1| predicted protein [Populus trichocarpa] gi|222865002|gb|EEF02133.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/262 (80%), Positives = 238/262 (90%), Gaps = 3/262 (1%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKS CCKH+IVIQTDPKNCEY
Sbjct: 52  MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSACCKHEIVIQTDPKNCEY 111

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQ 120
           VIISGAQRK EEFD+EDAET  LPADEERGKL+DPFYRLEHQE DLQKKKEAEP LV++Q
Sbjct: 112 VIISGAQRKNEEFDIEDAETFALPADEERGKLADPFYRLEHQEEDLQKKKEAEPILVRLQ 171

Query: 121 RISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLPSTKEDACAAAHVKF 180
           R+SD R  DDY+LNKALRA++RSQ+KRV EEEA S+K+GLG+RLLP+T+ED  +AAHVKF
Sbjct: 172 RVSDARHLDDYSLNKALRAQMRSQKKRVAEEEATSKKMGLGIRLLPTTEEDGASAAHVKF 231

Query: 181 SSKFEKNRKDKRALINAASIF---SGSSISSSKQLELEAKRRKINAGAASNMLTGAFKPS 237
           SSKF+KNRKDKRALI+A SIF   SGSS+S+ K+LELE+KRRKI+A AASN+LTG FKPS
Sbjct: 232 SSKFDKNRKDKRALISADSIFSGSSGSSMSNKKRLELESKRRKISASAASNLLTGGFKPS 291

Query: 238 SWSQSSVPSSRHKRSSVSARQF 259
           SWSQ +V  SRHK++S+SAR F
Sbjct: 292 SWSQGTVSGSRHKQNSMSARLF 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566831|ref|XP_002524399.1| Coiled-coil domain-containing protein, putative [Ricinus communis] gi|223536360|gb|EEF38010.1| Coiled-coil domain-containing protein, putative [Ricinus communis]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/256 (80%), Positives = 231/256 (90%), Gaps = 3/256 (1%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKS CCKH+IVIQTDPKNCEY
Sbjct: 52  MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSACCKHEIVIQTDPKNCEY 111

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQ 120
           VIISGAQ+KTE+FDVEDAET  LPADEERGKLSDPFYRLEHQE DLQKKKEAEP +V++Q
Sbjct: 112 VIISGAQKKTEDFDVEDAETFALPADEERGKLSDPFYRLEHQEEDLQKKKEAEPVIVRLQ 171

Query: 121 RISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLPSTKEDACAAAHVKF 180
           R+SD R SDDYALNKALRA+LRSQ+KRV+EEEA SRK+GLG+RLLP TKEDA  AAH+KF
Sbjct: 172 RVSDARHSDDYALNKALRARLRSQKKRVSEEEATSRKMGLGVRLLPVTKEDATTAAHMKF 231

Query: 181 SSKFEKNRKDKRALINAASIF---SGSSISSSKQLELEAKRRKINAGAASNMLTGAFKPS 237
           SSKFE+NR+DKRALINAASIF   S +S+ + K L+LEAKRRKI+A AASN+LTG F+PS
Sbjct: 232 SSKFERNRRDKRALINAASIFPESSRASLPNKKLLDLEAKRRKISAVAASNLLTGGFRPS 291

Query: 238 SWSQSSVPSSRHKRSS 253
           S  Q +V S RHK+SS
Sbjct: 292 SLLQGAVSSIRHKQSS 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434666|ref|XP_004135117.1| PREDICTED: coiled-coil domain-containing protein 130-like [Cucumis sativus] gi|449493470|ref|XP_004159304.1| PREDICTED: coiled-coil domain-containing protein 130-like [Cucumis sativus]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/262 (74%), Positives = 231/262 (88%), Gaps = 3/262 (1%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MP+NIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMK+ CC+ +IVIQTDPKNCEY
Sbjct: 52  MPYNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKAACCRQEIVIQTDPKNCEY 111

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQ 120
           VIISGAQRKTEE+D+EDAE  EL ADEE+GKL+DPFYRLEHQE D+QKKKEAEP LV++Q
Sbjct: 112 VIISGAQRKTEEYDIEDAEVFELTADEEKGKLADPFYRLEHQEKDMQKKKEAEPVLVRLQ 171

Query: 121 RISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLPSTKEDACAAAHVKF 180
           R+SD R +DDY+ N+ LRA+LRSQ+KRV EEE  SRK+GLG+RLLP+T+ED+ AAA +KF
Sbjct: 172 RLSDSRHADDYSRNRTLRAQLRSQKKRVAEEENVSRKMGLGIRLLPATQEDSAAAACMKF 231

Query: 181 SSKFEKNRKDKRALINAASIFSGSSISS---SKQLELEAKRRKINAGAASNMLTGAFKPS 237
            SKFEKNR+DKRALI+A+SIF+GSS SS    K+L+LE+KRRKI A AASN+LTG FKPS
Sbjct: 232 PSKFEKNRRDKRALIHASSIFNGSSTSSIPDKKRLDLESKRRKICASAASNILTGNFKPS 291

Query: 238 SWSQSSVPSSRHKRSSVSARQF 259
           SWS+S+  S R + +SV+AR+ 
Sbjct: 292 SWSRSAANSIRREGTSVTARRL 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443113|ref|XP_003591834.1| Coiled-coil domain-containing protein [Medicago truncatula] gi|355480882|gb|AES62085.1| Coiled-coil domain-containing protein [Medicago truncatula]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/261 (75%), Positives = 229/261 (87%), Gaps = 3/261 (1%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MP+NIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMK+ CC+ +I IQTDPKNCEY
Sbjct: 52  MPYNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKAACCRQEITIQTDPKNCEY 111

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQ 120
           VII GAQ+KTE+FDVEDAET ELPADEERGKL+DPFYRLEHQE DL+KKK+AEP LV++Q
Sbjct: 112 VIIGGAQKKTEDFDVEDAETFELPADEERGKLADPFYRLEHQEEDLKKKKQAEPVLVRLQ 171

Query: 121 RISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLPSTKEDACAAAHVKF 180
           R+SD R SDDYALNK+LRAKLRSQ+KRV EEEAASRK GLG+RLLP++ +DA AAA VKF
Sbjct: 172 RMSDARHSDDYALNKSLRAKLRSQKKRVAEEEAASRKRGLGIRLLPASDQDAAAAAKVKF 231

Query: 181 SSKFEKNRKDKRALINAASIFSG---SSISSSKQLELEAKRRKINAGAASNMLTGAFKPS 237
           SSKF++NRKDKRALINAA IF G   SS+S  ++LELE+KRRKI+A  AS++L G +KPS
Sbjct: 232 SSKFDRNRKDKRALINAAPIFPGLSVSSMSGKRRLELESKRRKISASTASSLLAGGYKPS 291

Query: 238 SWSQSSVPSSRHKRSSVSARQ 258
           SWSQ +V   R K +SV+AR 
Sbjct: 292 SWSQGAVLPGRQKGASVNARH 312

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737874|emb|CBI27075.3| unnamed protein product [Vitis vinifera]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/262 (77%), Positives = 230/262 (87%), Gaps = 3/262 (1%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKS CCKH+IVIQTDPKNCEY
Sbjct: 624 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSACCKHEIVIQTDPKNCEY 683

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQ 120
           VIISGAQRKTEEFD+EDAET  LPADEERGKL+DPFYRLEH+  DLQKKKEAEP LV++Q
Sbjct: 684 VIISGAQRKTEEFDIEDAETFALPADEERGKLADPFYRLEHEGEDLQKKKEAEPVLVRLQ 743

Query: 121 RISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLPSTKEDACAAAHVKF 180
           R+SD R SDDY+LNKALRA+LR+Q+KRV EEE  S+KLGLG+RLLP+T+EDA  AA +KF
Sbjct: 744 RVSDARHSDDYSLNKALRAQLRNQKKRVAEEEFVSKKLGLGIRLLPATEEDAAIAARMKF 803

Query: 181 SSKFEKNRKDKRALINAASIF---SGSSISSSKQLELEAKRRKINAGAASNMLTGAFKPS 237
           SSKFE+NRK+KRALINAASIF   SGSS+S  K+LEL +KRRKI AG AS +LT  FKPS
Sbjct: 804 SSKFERNRKEKRALINAASIFPGSSGSSLSDKKRLELGSKRRKIKAGTASELLTRGFKPS 863

Query: 238 SWSQSSVPSSRHKRSSVSARQF 259
           SW +SSV SS+ +  SV++R  
Sbjct: 864 SWLKSSVSSSQSRGMSVASRHL 885

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073208|gb|ACJ84963.1| unknown [Medicago truncatula]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/261 (75%), Positives = 228/261 (87%), Gaps = 3/261 (1%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MP+NIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMK+ CC+ +I IQTDPKNCEY
Sbjct: 52  MPYNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKAACCRQEITIQTDPKNCEY 111

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQ 120
           VII GAQ+KTE+FDVEDAET ELPADEERGKL+DPFYRLEHQE DL+KKK+AEP LV++Q
Sbjct: 112 VIIGGAQKKTEDFDVEDAETFELPADEERGKLADPFYRLEHQEEDLKKKKQAEPVLVRLQ 171

Query: 121 RISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLPSTKEDACAAAHVKF 180
           R+SD R SDDYALNK+LRAKLRSQ+KRV EEEAASRK GLG+RLLP++ +DA AAA VKF
Sbjct: 172 RMSDARHSDDYALNKSLRAKLRSQKKRVAEEEAASRKRGLGIRLLPASDQDAAAAAKVKF 231

Query: 181 SSKFEKNRKDKRALINAASIFSG---SSISSSKQLELEAKRRKINAGAASNMLTGAFKPS 237
           SSKF++NRKDKRALINAA IF G   SS+S  ++LELE+KRRKI+A  AS++L G +KPS
Sbjct: 232 SSKFDRNRKDKRALINAAPIFPGLSVSSMSGKRRLELESKRRKISASTASSLLAGGYKPS 291

Query: 238 SWSQSSVPSSRHKRSSVSARQ 258
           SW Q +V   R K +SV+AR 
Sbjct: 292 SWPQGAVLPGRQKGASVNARH 312

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423863|ref|XP_002281301.1| PREDICTED: coiled-coil domain-containing protein 130-like [Vitis vinifera]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/262 (77%), Positives = 230/262 (87%), Gaps = 3/262 (1%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKS CCKH+IVIQTDPKNCEY
Sbjct: 52  MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSACCKHEIVIQTDPKNCEY 111

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQ 120
           VIISGAQRKTEEFD+EDAET  LPADEERGKL+DPFYRLEH+  DLQKKKEAEP LV++Q
Sbjct: 112 VIISGAQRKTEEFDIEDAETFALPADEERGKLADPFYRLEHEGEDLQKKKEAEPVLVRLQ 171

Query: 121 RISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLPSTKEDACAAAHVKF 180
           R+SD R SDDY+LNKALRA+LR+Q+KRV EEE  S+KLGLG+RLLP+T+EDA  AA +KF
Sbjct: 172 RVSDARHSDDYSLNKALRAQLRNQKKRVAEEEFVSKKLGLGIRLLPATEEDAAIAARMKF 231

Query: 181 SSKFEKNRKDKRALINAASIF---SGSSISSSKQLELEAKRRKINAGAASNMLTGAFKPS 237
           SSKFE+NRK+KRALINAASIF   SGSS+S  K+LEL +KRRKI AG AS +LT  FKPS
Sbjct: 232 SSKFERNRKEKRALINAASIFPGSSGSSLSDKKRLELGSKRRKIKAGTASELLTRGFKPS 291

Query: 238 SWSQSSVPSSRHKRSSVSARQF 259
           SW +SSV SS+ +  SV++R  
Sbjct: 292 SWLKSSVSSSQSRGMSVASRHL 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501286|gb|AFK38709.1| unknown [Lotus japonicus]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/259 (74%), Positives = 227/259 (87%), Gaps = 1/259 (0%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MPFNIWCGGCNSMI KGVRFNAEKKQVGNYYSTKIWSFTMKS CC+H+IVIQTDPKNCEY
Sbjct: 52  MPFNIWCGGCNSMIGKGVRFNAEKKQVGNYYSTKIWSFTMKSACCRHEIVIQTDPKNCEY 111

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQ 120
           VIISGAQ+KTE++DVEDAE LEL  +EER  L+DPFYRLEH E DL+KKKEAEP LV++Q
Sbjct: 112 VIISGAQKKTEDYDVEDAEVLELATNEERSLLADPFYRLEHGEEDLKKKKEAEPVLVRLQ 171

Query: 121 RISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLPSTKEDACAAAHVKF 180
           R+SD R SDDYALNK+LRA+LRSQ+KRV EEE ASRK GLG+RLLP+T++DA  A  VKF
Sbjct: 172 RLSDTRHSDDYALNKSLRAQLRSQKKRVAEEETASRKRGLGIRLLPTTEQDAATAKQVKF 231

Query: 181 SSKFEKNRKDKRALINAASIFSGSSISSSK-QLELEAKRRKINAGAASNMLTGAFKPSSW 239
            +KF+KNRKDKRALIN+ASIF  SS +S K +LELE+KRRKI+A AAS++LTG  KPSSW
Sbjct: 232 LTKFDKNRKDKRALINSASIFPSSSSTSDKRRLELESKRRKISATAASSLLTGGLKPSSW 291

Query: 240 SQSSVPSSRHKRSSVSARQ 258
           SQ ++PSSR K +S++ R+
Sbjct: 292 SQGTIPSSRQKGASMTVRR 310

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496002|ref|XP_003516859.1| PREDICTED: coiled-coil domain-containing protein 130-like [Glycine max]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/253 (75%), Positives = 220/253 (86%), Gaps = 6/253 (2%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
           MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSF MKS CCKH+IVIQT+PKNCEY
Sbjct: 52  MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFAMKSACCKHEIVIQTNPKNCEY 111

Query: 61  VIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQ 120
           VIISGAQ+KTE+FD+EDAET ELPADEERGKL+DPFYRLEHQE DL+KKKEAEP +V++Q
Sbjct: 112 VIISGAQKKTEDFDIEDAETFELPADEERGKLADPFYRLEHQEEDLKKKKEAEPVIVRLQ 171

Query: 121 RISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLPSTKEDACAAAHVKF 180
           R SD R SDDY LNK LRA+LRSQ+KRVTEEE AS+K GLG+RLLP+T++D+  A  VKF
Sbjct: 172 RQSDARHSDDYYLNKTLRAQLRSQKKRVTEEENASKKRGLGIRLLPATEQDSATAKSVKF 231

Query: 181 SSKFEKNRKDKRALINAASIFSG---SSISSSKQLELEAKRRKINAGAASNMLTGAFKPS 237
           S+KF+KNRKDKRALI++ SIFSG    S+S  ++ ELE+KRRKI A +AS++L G  KPS
Sbjct: 232 SAKFDKNRKDKRALISSESIFSGVSSYSMSDKRKRELESKRRKICATSASSLLAGRVKPS 291

Query: 238 SWSQSSVPSSRHK 250
           SWSQ   PSS+ K
Sbjct: 292 SWSQ---PSSKQK 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2824443	310	AT1G25682 "AT1G25682" [Arabido	0.907	0.758	0.724	1e-91
UNIPROTKB|Q5EA37	400	CCDC130 "Coiled-coil domain-co	0.749	0.485	0.465	2.8e-41
UNIPROTKB|F1SD79	398	CCDC130 "Uncharacterized prote	0.749	0.487	0.465	3.6e-41
UNIPROTKB|P13994	396	CCDC130 "Coiled-coil domain-co	0.749	0.489	0.460	9.6e-41
MGI|MGI:1914986	385	Ccdc130 "coiled-coil domain co	0.749	0.503	0.440	6.1e-39
RGD|1307598	385	Ccdc130 "coiled-coil domain co	0.749	0.503	0.440	6.1e-39
UNIPROTKB|F1MLB3	334	CCDC130 "Coiled-coil domain-co	0.683	0.529	0.456	9.5e-34
FB|FBgn0034402	316	CG15084 [Drosophila melanogast	0.749	0.613	0.361	6e-32
DICTYBASE|DDB_G0281599	325	ccdc130 "coiled-coil domain-co	0.752	0.6	0.341	1.5e-28
WB|WBGene00014250	369	ZK1307.9 [Caenorhabditis elega	0.656	0.460	0.384	2.4e-28

TAIR|locus:2824443 AT1G25682 "AT1G25682" [Arabidopsis thaliana (taxid:3702)]

 Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
 Identities = 171/236 (72%), Positives = 203/236 (86%)

Query:     1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
             MP+NIWCGGC+SMIAKGVRFNAEKKQVGNYYSTKIWSF MKSPCCKH+IVIQTDP+NCEY
Sbjct:    52 MPYNIWCGGCSSMIAKGVRFNAEKKQVGNYYSTKIWSFAMKSPCCKHEIVIQTDPQNCEY 111

Query:    61 VIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQ 120
             VI SGAQ+K EE++ EDAET+EL A++E+GKL+DPFYRLEHQE DLQKKK AEP LV++Q
Sbjct:   112 VITSGAQKKVEEYEAEDAETMELTAEQEKGKLADPFYRLEHQEVDLQKKKAAEPLLVRLQ 171

Query:   121 RISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLPSTKEDACAAAHVKF 180
             R+SD R +DDY+LNKALRA+LR  RKRV EEE ASRKLGLG+RLLP ++ED  AA++VKF
Sbjct:   172 RVSDARHADDYSLNKALRAQLRRHRKRVAEEETASRKLGLGIRLLPKSEEDIKAASNVKF 231

Query:   181 SSKFEKNRKDKRALINAAXXX-XXXXXXXXKQLELEAKRRKINAGAASNMLTGAFK 235
              SKF+KNRKDKRALI+A+            K++ELEAKRRKI+A +AS++L G FK
Sbjct:   232 KSKFDKNRKDKRALIHASSIFPESSYSSSKKRMELEAKRRKISAASASSLLRGGFK 287

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5EA37 CCDC130 "Coiled-coil domain-containing protein 130" [Bos taurus (taxid:9913)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 94/202 (46%), Positives = 126/202 (62%)

Query:     1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
             MP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+Y
Sbjct:    50 MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDY 109

Query:    61 VIISGAQRKTEEFDVEDAETLELPADEERGKLS-DPFYRLEHQEADLQKKKEAEPRLVQI 119
             VI+SGAQRK E +D+ED E +     E++ KL  D  +RLEH EAD    K+A P L  I
Sbjct:   110 VIVSGAQRKEERWDMEDNEQVLTTEHEKKQKLEMDAMFRLEHGEADRSTLKKALPTLSHI 169

Query:   120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEE----AASRKLGLGLRLLPSTKEDACAA 175
             Q  +   + DD+ALN  LR + R ++K + EEE    A   K  L + L+P T++D   A
Sbjct:   170 QE-AQSAWKDDFALNSMLRKRFREKKKAMQEEEERDQALQAKASLAIPLVPETEDDRRLA 228

Query:   176 AHVKFSS--KFEKNRKDKRALI 195
             A +KF +   +E  +K KR  I
Sbjct:   229 ALLKFHTLDSYEDKQKLKRTEI 250

GO:0009615 "response to virus" evidence=IEA

UNIPROTKB|F1SD79 CCDC130 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 94/202 (46%), Positives = 126/202 (62%)

Query:     1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
             MP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+Y
Sbjct:    50 MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDY 109

Query:    61 VIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQI 119
             VI+SGAQRK E +D+ D E +     E++ KL +D  YRLEH EAD    K+A P L  I
Sbjct:   110 VIVSGAQRKEERWDMADNEQVLTTEHEKKQKLETDAMYRLEHGEADRSTLKKALPTLSHI 169

Query:   120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEE----AASRKLGLGLRLLPSTKEDACAA 175
             Q   +  + DD+ALN  LR + R ++K + EEE    A   K  L + L+P T++D   A
Sbjct:   170 QEAQNA-WKDDFALNSMLRKRFREKKKAMLEEEERDQALQAKASLAIPLVPETEDDRRLA 228

Query:   176 AHVKFSS--KFEKNRKDKRALI 195
             A +KF +   +E  +K KR  I
Sbjct:   229 ALLKFHTLDSYEDKQKLKRTEI 250

GO:0009615 "response to virus" evidence=IEA

UNIPROTKB|P13994 CCDC130 "Coiled-coil domain-containing protein 130" [Homo sapiens (taxid:9606)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 93/202 (46%), Positives = 126/202 (62%)

Query:     1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
             MP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+Y
Sbjct:    50 MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDY 109

Query:    61 VIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQI 119
             VI+SGAQRK E +D+ D E +     E++ KL +D  +RLEH EAD    K+A P L  I
Sbjct:   110 VIVSGAQRKEERWDMADNEQVLTTEHEKKQKLETDAMFRLEHGEADRSTLKKALPTLSHI 169

Query:   120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEE----AASRKLGLGLRLLPSTKEDACAA 175
             Q  +   + DD+ALN  LR + R ++K + EEE    A   K  L + L+P T++D   A
Sbjct:   170 QE-AQSAWKDDFALNSMLRRRFREKKKAIQEEEERDQALQAKASLTIPLVPETEDDRKLA 228

Query:   176 AHVKFSS--KFEKNRKDKRALI 195
             A +KF +   +E  +K KR  I
Sbjct:   229 ALLKFHTLDSYEDKQKLKRTEI 250

GO:0009615 "response to virus" evidence=IEP

GO:0005575 "cellular_component" evidence=ND

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1914986 Ccdc130 "coiled-coil domain containing 130" [Mus musculus (taxid:10090)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 89/202 (44%), Positives = 124/202 (61%)

Query:     1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
             MP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+Y
Sbjct:    50 MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDY 109

Query:    61 VIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQI 119
             VI+SGA RK E +D+ED E +     E++ KL +D  +RLEH EAD    K+A P L  I
Sbjct:   110 VIVSGASRKEERWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHI 169

Query:   120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEE----AASRKLGLGLRLLPSTKEDACAA 175
             Q   +  + DD+ALN  LR   R ++K + EEE    A   K  L + L+P +++D   A
Sbjct:   170 QEAQNA-WKDDFALNSMLRRHFREKKKAMQEEEEKDQALQAKASLAIPLVPESEDDRRLA 228

Query:   176 AHVKFSS--KFEKNRKDKRALI 195
             A ++  +   +E  ++ KR  I
Sbjct:   229 ALLRLHTLDSYEDKQRMKRTEI 250

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1307598 Ccdc130 "coiled-coil domain containing 130" [Rattus norvegicus (taxid:10116)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 89/202 (44%), Positives = 124/202 (61%)

Query:     1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
             MP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+Y
Sbjct:    50 MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDY 109

Query:    61 VIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQI 119
             VI+SGA RK E +D+ED E +     E++ KL +D  +RLEH EAD    K+A P L  I
Sbjct:   110 VIVSGASRKEERWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHI 169

Query:   120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEE----AASRKLGLGLRLLPSTKEDACAA 175
             Q   +  + DD+ALN  LR   R ++K + EEE    A   K  L + L+P +++D   A
Sbjct:   170 QEAQNA-WKDDFALNSMLRRHFREKKKAMQEEEEKDQALQAKANLAIPLVPESEDDRRLA 228

Query:   176 AHVKFSS--KFEKNRKDKRALI 195
             A ++  +   +E  ++ KR  I
Sbjct:   229 ALLRLHTLDSYEDKQRMKRTEI 250

GO:0009615 "response to virus" evidence=IEA;ISO

UNIPROTKB|F1MLB3 CCDC130 "Coiled-coil domain-containing protein 130" [Bos taurus (taxid:9913)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 85/186 (45%), Positives = 114/186 (61%)

Query:    17 GVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVE 76
             GVR+NAEKK VGNYY+T I+ F MK   C + I +QTDP NC+YVI+SGAQRK E +D+E
Sbjct:     1 GVRYNAEKK-VGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRKEERWDME 59

Query:    77 DAETLELPADEERGKLS-DPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNK 135
             D E +     E++ KL  D  +RLEH EAD    K+A P L  IQ  +   + DD+ALN 
Sbjct:    60 DNEQVLTTEHEKKQKLEMDAMFRLEHGEADRSTLKKALPTLSHIQE-AQSAWKDDFALNS 118

Query:   136 ALRAKLRSQRKRVTEEE----AASRKLGLGLRLLPSTKEDACAAAHVKFSS--KFEKNRK 189
              LR + R ++K + EEE    A   K  L + L+P T++D   AA +KF +   +E  +K
Sbjct:   119 MLRKRFREKKKAMQEEEERDQALQAKASLAIPLVPETEDDRRLAALLKFHTLDSYEDKQK 178

Query:   190 DKRALI 195
              KR  I
Sbjct:   179 LKRTEI 184

GO:0009615 "response to virus" evidence=IEA

FB|FBgn0034402 CG15084 [Drosophila melanogaster (taxid:7227)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 72/199 (36%), Positives = 113/199 (56%)

Query:     1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
             MP+NIWC GC + I  GVR+NAEK +VG YY+T ++ F MK   C +   IQTDP N +Y
Sbjct:    49 MPYNIWCDGCKNHIGMGVRYNAEKTKVGMYYTTPVFKFRMKCHLCDNHFEIQTDPGNLDY 108

Query:    61 VIISGAQRKTEEFD-VEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQI 119
             VI+SGA+R+   +D +++ + +    + ++    D  Y+LEHQ  D +   +A P L ++
Sbjct:   109 VILSGARRQENRWDPLQNEQVVPETKEVQKRLFDDAMYKLEHQAKDAKAGADARPVLQKL 168

Query:   120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKL----GLGLRLLPSTKEDACAA 175
                +   + D Y  N  LRA+ R Q+K +  ++   R+L     L + LLP T +D   A
Sbjct:   169 VERNMSVWDDSYMANSRLRAEFRQQKKEINGQQELDRQLLAKSSLDIALLPETTQDREMA 228

Query:   176 AHVKFSSKFEKNRKDKRAL 194
             A +K  +K    R+ ++ L
Sbjct:   229 ALMKLQTKSALERESEQRL 247

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0281599 ccdc130 "coiled-coil domain-containing protein 130" [Dictyostelium discoideum (taxid:44689)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 72/211 (34%), Positives = 116/211 (54%)

Query:     1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
             MPF++WC GC   I  GVRFNAEKK V  Y+++ I+SF MK   C +Q  IQ DPKN +Y
Sbjct:    49 MPFSVWCLGCECHIGMGVRFNAEKKTVDKYFTSNIYSFKMKCHQCSNQFEIQNDPKNTDY 108

Query:    61 VIISGAQRKTEEFDVEDAE---TLELPADEERGKLS--------DPFYRLEHQEADLQKK 109
              +ISG +++ E+F+ ED+E   +  +  D+     +        D   +LE+++ D++K 
Sbjct:   109 KLISGLKKRIEQFNPEDSELPSSFIIKYDDNNNNNNNNNNNDNNDTLLKLENKKLDIEKG 168

Query:   110 KEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLPSTK 169
             K+   +L ++Q I   R  +DY L+  +R   R ++K    E    +  G+ + LL   +
Sbjct:   169 KKESTQLEKLQEIMTNRTINDYQLSSIMRKSFREKKKEDQIELERQKSKGIMIPLLKENQ 228

Query:   170 EDACAAAHVKFSS-----KFEKNRKDKRALI 195
             +D   A  + F+S     K +++ K KR LI
Sbjct:   229 DDIDTAKDIDFNSNSLKRKLDESNKLKRELI 259

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00014250 ZK1307.9 [Caenorhabditis elegans (taxid:6239)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 68/177 (38%), Positives = 101/177 (57%)

Query:     1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
             MPFNIWC GC++ +  GVR+NAEKK++G YY+T +  F MK   C +  VI+TDPKN +Y
Sbjct:    50 MPFNIWCLGCHNHVGMGVRYNAEKKKIGMYYTTPLHEFRMKCHLCDNYYVIRTDPKNFDY 109

Query:    61 VIISGAQRKTEEFDVEDAETLELPADEERGKLS-DPFYRLEHQEADLQKKKEAEPRLVQI 119
              ++ G  R+   FD  D   +         KL+ D  ++ EH+  D  K    E R+ ++
Sbjct:   110 ELVEGCSRQELRFDPTDIAQIGAVDRGFTQKLAADAMFKKEHEAEDKDKAATEEGRVDKL 169

Query:   120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASR----KLGLGL-RLLPSTKED 171
             + I + R  DD+  N  LRA+ R+++K + E  A       KL +G  +LLP T+ED
Sbjct:   170 EWIQE-RMRDDFTANSFLRAQFRNEKKSLNETRARDANLRDKLSIGTTQLLPETEED 225

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
pfam04502	321	pfam04502, DUF572, Family of unknown function (DUF	3e-38
COG5134	272	COG5134, COG5134, Uncharacterized conserved protei	3e-20

>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572)

 Score =  136 bits (343), Expect = 3e-38
 Identities = 64/174 (36%), Positives = 90/174 (51%), Gaps = 6/174 (3%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGN--YYSTKIWSFTMKSPCCKHQIVIQTDPKNC 58
            PFN+ C  C   I KG +FNA K++VGN  Y  T I+ F +K   C ++I  +TDPKN 
Sbjct: 37  APFNMRCDTCGEYIYKGTKFNARKEKVGNETYLGTPIFRFYIKCTKCLNEITFKTDPKNT 96

Query: 59  EYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLV 117
           +YV+ SGA R   E D  D E  E    E   +L  D   +LE++ AD +++ E   RL 
Sbjct: 97  DYVVESGATR-NYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLE 155

Query: 118 QIQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLPSTKED 171
           +++ +   R   D  +N  L A  R ++K   EEE     L   L   P T+ED
Sbjct: 156 ELKELQSRR--ADVDVNSMLEALFRREKKEEEEEEEEDEALIKSLSFGPETEED 207

Family of eukaryotic proteins with undetermined function. Length = 321

>gnl|CDD|227463 COG5134, COG5134, Uncharacterized conserved protein [Function unknown]

 Score = 87.1 bits (215), Expect = 3e-20
 Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 14/167 (8%)

Query: 1   MPFNIWCGGCNSMIAKGVRFNAEKKQVGN--YYSTKIWSFTMKSPCCKHQIVIQTDPKNC 58
            PF + C  C + I KG RFNA K+++G+  YY+TKI+ F++K   C + I ++TDPKN 
Sbjct: 39  TPFPVRCLNCENYIQKGTRFNAVKEEIGDKSYYTTKIYRFSIKCHLCSNPIDVRTDPKNT 98

Query: 59  EYVIISGAQRKTEEFDVEDAETLELP--------ADEERGKLSDPFYRLEHQEADLQKKK 110
           EYV+ SG +RK E  D+ +               A E   K        +H  + +    
Sbjct: 99  EYVVESGGRRKIEPQDINEDPAKAENVEKVPESDAIEALEKQLTQQKSEKHNSSAINFID 158

Query: 111 EAEPRLVQIQRISDGR----FSDDYALNKALRAKLRSQRKRVTEEEA 153
           E   RL     +S  R    F +   + K   AK  S + R   +  
Sbjct: 159 ELNKRLWSDPFVSSQRLRKQFRERKKIEKKQEAKDLSLKNRAALDID 205

Length = 272

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
KOG2990	317	consensus C2C2-type Zn-finger protein [Function un	100.0
PF04502	324	DUF572: Family of unknown function (DUF572) ; Inte	100.0
KOG2989	253	consensus Uncharacterized conserved protein [Funct	100.0
COG5134	272	Uncharacterized conserved protein [Function unknow	100.0
PF05907	161	DUF866: Eukaryotic protein of unknown function (DU	90.36
PF10122	51	Mu-like_Com: Mu-like prophage protein Com; InterPr	88.8
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	88.32
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	82.19
PRK03681	114	hypA hydrogenase nickel incorporation protein; Val	82.06

>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]

Probab=100.00  E-value=2.7e-71  Score=504.14  Aligned_cols=253  Identities=49%  Similarity=0.755  Sum_probs=210.9

Q ss_pred             CCcceecCCCCccccccccccceeeccCceeeeeeEEEEEEcCCCCceeEEecCCCCCCeeeecCcccCCCcCChhhhhc
Q 025008            1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAET   80 (259)
Q Consensus         1 mPF~iwC~~C~~~I~kGvRFNAeKk~vg~Y~st~I~~F~mkC~~C~~~i~ikTDPkn~dYvv~~GarR~~e~~~~~~~e~   80 (259)
                      |||||||++|.+||||||||||+|++||+||+||||+|+||||+|.|+|+|+|||+||||||+|||+|+.++||++|+|+
T Consensus        49 MPynIWC~gC~nhIgmGvRyNAeKkkvGnYYtTpiw~FrmKchlC~n~i~iqTDP~NceYvI~SGaqRKeer~D~~d~Eq  128 (317)
T KOG2990|consen   49 MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIWSFRMKCHLCDNYIVIQTDPKNCEYVITSGAQRKEERYDAEDAEQ  128 (317)
T ss_pred             cccchhhccHHHhhhccceechhhhhccccccCcccchhhcccccCCceeeecCCCCceEEEeccccccccccCchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCchhhhcCCC-ChhHHhhhhHHHHHHHHHHhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 025008           81 LELPADEERGKLS-DPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEA----AS  155 (259)
Q Consensus        81 ~~~~~~ee~~~~~-dpm~~LE~~~~D~~~~~~~~~~LeeL~~~~~~~~~Ddy~~N~~LR~~fR~~kk~~~~~e~----~~  155 (259)
                      ++..+.++.+++. |||++|||+..|.++.+.+.+.|..|++.++++|.|||.+|+.||++||++||..+++++    ..
T Consensus       129 ~~~t~~e~k~KLa~DamyrLEHqe~D~~k~k~aep~l~~l~e~~~~rw~Ddf~~ns~LRaqfR~~kK~~~e~~~~D~~l~  208 (317)
T KOG2990|consen  129 MEPTAEEEKGKLASDAMYRLEHQEVDLKKKKAAEPVLVRLQEVNDARWADDFQANSRLRAQFREEKKLINEQEARDLDLF  208 (317)
T ss_pred             ccchhhhhcccccccHHHHHHhHHHhHhhhhccchHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence            9888888888885 999999999999999999999999999999999999999999999999999999987644    34


Q ss_pred             HhhCCCCCCCCCChHHHHHhcccCcchhhhhh-hH-HHHHhhhhcCCCCCCCCCcchhHHHHHHhhhcchhhhhhhhcCC
Q 025008          156 RKLGLGLRLLPSTKEDACAAAHVKFSSKFEKN-RK-DKRALINAASIFSGSSISSSKQLELEAKRRKINAGAASNMLTGA  233 (259)
Q Consensus       156 ~k~gl~i~Ll~e~eeD~~~A~~v~f~~~~~~~-~~-~kr~~i~~~siF~~~~~s~k~~~~~~~~r~k~~~~~a~~~l~~~  233 (259)
                      .+.+|+|.|||++++|+..|.+++|.....+. +. ..|..|.++ ++...+.|.+ ...+.  |.++.+..+++.+-|.
T Consensus       209 ~r~sl~I~lLPeTe~Dr~~A~llk~~~~~~kedr~~~~r~~i~sr-p~~~~S~sts-~g~l~--r~~~a~~~~~~~~lg~  284 (317)
T KOG2990|consen  209 ARASLDILLLPETEEDRKIASLLKFNTKKRKEDRENNRRLEIKSR-PSRTGSTSTS-SGSLK--RDPFARKFLPSEDLGI  284 (317)
T ss_pred             HhhhcCcccCCCchhhHHHHHHHhhcccchhhhHHhhhhhhhccC-CCCCCCcccc-ccccc--cchhhhcccchhhhhh
Confidence            57788999999999999999999997543332 23 344445444 4444343322 22333  8888888888888888


Q ss_pred             CcCCcccCCCCCCccccCCccccc
Q 025008          234 FKPSSWSQSSVPSSRHKRSSVSAR  257 (259)
Q Consensus       234 ~k~~~~~~~~~~~~~~~~~~~~~~  257 (259)
                      .+..+.+............+|..|
T Consensus       285 ~~~k~~st~~a~~~~~~~~~v~~~  308 (317)
T KOG2990|consen  285 RRRKIESTSNAAGEKLPDSSVSDR  308 (317)
T ss_pred             hhhhccCCcccCCCcCccchhccc
Confidence            887764443333333445555444

>PF04502 DUF572: Family of unknown function (DUF572) ; InterPro: IPR007590 This entry represents eukaryotic proteins with undetermined function belonging to the CWC16 family

Probab=100.00  E-value=2.3e-57  Score=423.79  Aligned_cols=175  Identities=41%  Similarity=0.670  Sum_probs=152.3

Q ss_pred             CCcceecCCCCccccccccccceeeccCc--eeeeeeEEEEEEcCCCCceeEEecCCCCCCeeeecCcccCCCcCChhhh
Q 025008            1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGN--YYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDA   78 (259)
Q Consensus         1 mPF~iwC~~C~~~I~kGvRFNAeKk~vg~--Y~st~I~~F~mkC~~C~~~i~ikTDPkn~dYvv~~GarR~~e~~~~~~~   78 (259)
                      |||+|||++|++|||+||||||+|++||+  |||||||+||||||.|+++|+|+|||+|+||||++||+|+++.|...+ 
T Consensus        37 ~Pf~i~C~~C~~~I~kG~rFNA~Ke~v~~E~Yls~~I~rF~~kC~~C~~~i~~kTDPkn~dY~~~~Ga~R~~~~~~~~~-  115 (324)
T PF04502_consen   37 MPFNIWCNTCGEYIYKGVRFNARKEKVGNEKYLSTPIYRFYIKCPRCSNEIEFKTDPKNTDYVVESGARRNFEPDKEEE-  115 (324)
T ss_pred             CCccCcCCCCccccccceeeeeeeEecCCCccccceEEEEEEEcCCCCCEEeeecCCCCCCeeeecCeeecCCcchhhh-
Confidence            89999999999999999999999999998  999999999999999999999999999999999999999777665443 


Q ss_pred             hccccCch-hhhcCCCChhHHhhhhHHHHHHHHHHhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025008           79 ETLELPAD-EERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRK  157 (259)
Q Consensus        79 e~~~~~~~-ee~~~~~dpm~~LE~~~~D~~~~~~~~~~LeeL~~~~~~~~~Ddy~~N~~LR~~fR~~kk~~~~~e~~~~k  157 (259)
                      +++...+. ++.+...|||++||+++.|+++++++.++|++|++++.+  .|||+.|++||+.||.++++++.+++....
T Consensus       116 ~~~~~~~~~~~~~~~~d~m~~LE~~~~d~~~~~~~~~~LeeL~~~~~r--~d~~~~n~~Lr~~~r~~~k~~~~~~~~d~~  193 (324)
T PF04502_consen  116 EQEEREDKEEEEEEEEDPMKALEKRTEDSKREMEALERLEELQELNAR--KDDYDANQMLRKRFREEKKERERQEEEDEA  193 (324)
T ss_pred             hhhhhhhHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            33333333 333456899999999999999999999999999999987  899999999999999999998876665555


Q ss_pred             hCCCCCCCCCChHHHHHhccc
Q 025008          158 LGLGLRLLPSTKEDACAAAHV  178 (259)
Q Consensus       158 ~gl~i~Ll~e~eeD~~~A~~v  178 (259)
                      +...+.|.|++++|...+...
T Consensus       194 ~~~~~~~~~~~~~~~r~~~~~  214 (324)
T PF04502_consen  194 LKKKISLGPESEEDKRLAADE  214 (324)
T ss_pred             HHHhhccCcchhhhhhhhcch
Confidence            555555668899998887763

>KOG2989 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=9.4e-35  Score=260.33  Aligned_cols=128  Identities=31%  Similarity=0.562  Sum_probs=115.2

Q ss_pred             CCcceecCCCCccccccccccceeecc-C-ceeeeeeEEEEEEcCCCCceeEEecCCCCCCeeeecCcccCCCcCChhhh
Q 025008            1 MPFNIWCGGCNSMIAKGVRFNAEKKQV-G-NYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDA   78 (259)
Q Consensus         1 mPF~iwC~~C~~~I~kGvRFNAeKk~v-g-~Y~st~I~~F~mkC~~C~~~i~ikTDPkn~dYvv~~GarR~~e~~~~~~~   78 (259)
                      .||+|+|++||+|||+|++||+.++.| | .||||+||+|||+|+.|+++|+|+|||+|+|||+++||.|++++|...+.
T Consensus        37 ~Pf~~rC~tCgeyi~kg~kfN~r~E~~~~e~yLgiki~Rf~i~Ct~cl~el~~rTDp~N~dY~~E~Ga~r~y~~~~~~ee  116 (253)
T KOG2989|consen   37 TPFRLRCNTCGEYIYKGKKFNAREEDVIEETYLGIKIFRFYIKCTRCLRELSFRTDPKNSDYVIESGATRNYEPIEEEEE  116 (253)
T ss_pred             ccceeecccccchhhcCCCcchhHHhhhccccccceeeeeeeeccchHhhhhhhcCCcchHHHHHhcchhcccccchhHH
Confidence            599999999999999999999999998 3 89999999999999999999999999999999999999999999987665


Q ss_pred             hccccCchhhhcCCCChhHHhhhhHHHHHHHHHHhHHHHHHHHHHhcccCCHH
Q 025008           79 ETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDY  131 (259)
Q Consensus        79 e~~~~~~~ee~~~~~dpm~~LE~~~~D~~~~~~~~~~LeeL~~~~~~~~~Ddy  131 (259)
                      +.-..  .++ +...|||..||+++.+++.++.....|++|..++.++...|+
T Consensus       117 ek~k~--~~~-~d~~d~m~~lekrt~~S~~e~~~~~~ldel~~~k~r~~~id~  166 (253)
T KOG2989|consen  117 EKRKF--EEE-EDMKDEIKRLEKRTFQSKDEEIIRRALDELKVLKERPAPIDL  166 (253)
T ss_pred             HHHHH--Hhh-hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhcccCcccH
Confidence            43211  122 456799999999999999999999999999999999877777

>COG5134 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.2e-34  Score=253.90  Aligned_cols=168  Identities=33%  Similarity=0.596  Sum_probs=130.6

Q ss_pred             CCcceecCCCCccccccccccceeeccC--ceeeeeeEEEEEEcCCCCceeEEecCCCCCCeeeecCcccCCCcCChhhh
Q 025008            1 MPFNIWCGGCNSMIAKGVRFNAEKKQVG--NYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDA   78 (259)
Q Consensus         1 mPF~iwC~~C~~~I~kGvRFNAeKk~vg--~Y~st~I~~F~mkC~~C~~~i~ikTDPkn~dYvv~~GarR~~e~~~~~~~   78 (259)
                      .||+|+|+.|++||++|+||||.|+-++  .||||+||||.|+||.|++.|-|+|||+|++||+++|++|++++-++.+.
T Consensus        39 TPF~~RCL~C~~YI~K~~rfNavkE~~~dK~y~~~kiYRf~I~C~~C~n~i~~RTDPkN~~YV~EsGg~R~i~pq~~n~D  118 (272)
T COG5134          39 TPFPVRCLNCENYIQKGTRFNAVKEEIGDKSYYTTKIYRFSIKCHLCSNPIDVRTDPKNTEYVVESGGRRKIEPQDINED  118 (272)
T ss_pred             cCcceeecchhhhhhcccchhHHHHHhcccccceeEEEEEEEEccCCCCceeeecCCCCceEEEecCceeecCccccccC
Confidence            4999999999999999999999999997  68999999999999999999999999999999999999999887665443


Q ss_pred             hccccCchhhhcCCCChhHHhhhhHHHHHHHHHHhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 025008           79 ETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAAS---  155 (259)
Q Consensus        79 e~~~~~~~ee~~~~~dpm~~LE~~~~D~~~~~~~~~~LeeL~~~~~~~~~Ddy~~N~~LR~~fR~~kk~~~~~e~~~---  155 (259)
                      +....  .-+.-...|....+|+..++..........+..+-.+..+-|+|+|...+.+|.+|+..|+.+..+++..   
T Consensus       119 ~~k~~--~Ve~~~Esd~~~~~eK~~~Q~~~~~~~ssA~n~~D~L~Krl~~~~~~~~~~~~~~~~~~k~~e~~q~a~~~~~  196 (272)
T COG5134         119 PAKAE--NVEKVPESDAIEALEKQLTQQKSEKHNSSAINFIDELNKRLWSDPFVSSQRLRKQFRERKKIEKKQEAKDLSL  196 (272)
T ss_pred             hhhhh--hhhcCchhHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHhhcCchhhhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence            21100  0011122466677777776666554444455566666778899999999999999999998886555432   


Q ss_pred             -HhhCCCCCCCCCChH
Q 025008          156 -RKLGLGLRLLPSTKE  170 (259)
Q Consensus       156 -~k~gl~i~Ll~e~ee  170 (259)
                       ....+.+.++|.+.+
T Consensus       197 ~~~a~~~~~i~~~~~d  212 (272)
T COG5134         197 KNRAALDIDILPSSSD  212 (272)
T ss_pred             hhhhhhhhccCCccch
Confidence             234568888887543

>PF05907 DUF866: Eukaryotic protein of unknown function (DUF866); InterPro: IPR008584 This family consists of a number of hypothetical eukaryotic proteins of unknown function with an average length of around 165 residues

Probab=90.36  E-value=0.26  Score=42.53  Aligned_cols=62  Identities=27%  Similarity=0.412  Sum_probs=35.0

Q ss_pred             CcceecCCCCccccccccccc-eeeccCceeeeeeEEEEEEcCCCCceeEEecCCC-CCCeeeecC
Q 025008            2 PFNIWCGGCNSMIAKGVRFNA-EKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPK-NCEYVIISG   65 (259)
Q Consensus         2 PF~iwC~~C~~~I~kGvRFNA-eKk~vg~Y~st~I~~F~mkC~~C~~~i~ikTDPk-n~dYvv~~G   65 (259)
                      .|.|.|+.|++--.+.|-+|. ++..+..  |---=.|.|||..|..+..|.--|. ...|.++..
T Consensus        28 ~fkvkCt~CgE~~~k~V~i~~~e~~e~~g--srG~aNfv~KCk~C~re~si~i~~~~~~~~~~e~~   91 (161)
T PF05907_consen   28 FFKVKCTSCGEVHPKWVYINRFEKHEIPG--SRGTANFVMKCKFCKRESSIDIIPGKGKPYTAEDS   91 (161)
T ss_dssp             EEEEEETTSS--EEEEEEE-TT-BEE-TT--SS-EESEEE--SSSS--EEEEEE--TTTEEEGGGT
T ss_pred             EEEEEECCCCCccCcceEeecceEEecCC--CccceEeEecCcCcCCccEEEEEecCccccccccc
Confidence            488999999998888888885 4444422  2222389999999999988854443 345665433

; PDB: 1ZSO_B.

>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ]

Probab=88.80  E-value=0.43  Score=34.13  Aligned_cols=37  Identities=32%  Similarity=0.606  Sum_probs=28.0

Q ss_pred             CCcceecCCCCccccccccccceeeccCceeeeeeEEEEEEcCCCCceeEEe
Q 025008            1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQ   52 (259)
Q Consensus         1 mPF~iwC~~C~~~I~kGvRFNAeKk~vg~Y~st~I~~F~mkC~~C~~~i~ik   52 (259)
                      |.=.|+|.+|+...+++.          .|-     ...||||.|..--.|+
T Consensus         1 m~~eiRC~~CnklLa~~g----------~~~-----~leIKCpRC~tiN~~~   37 (51)
T PF10122_consen    1 MLKEIRCGHCNKLLAKAG----------EVI-----ELEIKCPRCKTINHVR   37 (51)
T ss_pred             CCcceeccchhHHHhhhc----------Ccc-----EEEEECCCCCccceEe
Confidence            445799999999998852          221     5789999999877764

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.32  E-value=0.3  Score=32.90  Aligned_cols=24  Identities=38%  Similarity=0.538  Sum_probs=21.6

Q ss_pred             EEcCCCCceeEEecCCCCCCeeeec
Q 025008           40 MKSPCCKHQIVIQTDPKNCEYVIIS   64 (259)
Q Consensus        40 mkC~~C~~~i~ikTDPkn~dYvv~~   64 (259)
                      |+||.|++.- |-+|+.+.+||+..
T Consensus         1 m~Cp~Cg~~~-~~~D~~~g~~vC~~   24 (43)
T PF08271_consen    1 MKCPNCGSKE-IVFDPERGELVCPN   24 (43)
T ss_dssp             ESBTTTSSSE-EEEETTTTEEEETT
T ss_pred             CCCcCCcCCc-eEEcCCCCeEECCC
Confidence            7899999988 89999999998865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=82.19  E-value=1.1  Score=29.00  Aligned_cols=21  Identities=14%  Similarity=0.417  Sum_probs=16.4

Q ss_pred             eeeEEEEEEcCCCCceeEEecCC
Q 025008           33 TKIWSFTMKSPCCKHQIVIQTDP   55 (259)
Q Consensus        33 t~I~~F~mkC~~C~~~i~ikTDP   55 (259)
                      .|||.|  +|+.|+..|++-..-
T Consensus         1 Mp~Y~y--~C~~Cg~~fe~~~~~   21 (41)
T smart00834        1 MPIYEY--RCEDCGHTFEVLQKI   21 (41)
T ss_pred             CCCEEE--EcCCCCCEEEEEEec
Confidence            377877  899999999876643

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PRK03681 hypA hydrogenase nickel incorporation protein; Validated

Probab=82.06  E-value=0.69  Score=37.62  Aligned_cols=30  Identities=20%  Similarity=0.538  Sum_probs=19.8

Q ss_pred             CCcceecCCCCccccccccccceeeccCceeeeeeEEEEEEcCCCCce
Q 025008            1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQ   48 (259)
Q Consensus         1 mPF~iwC~~C~~~I~kGvRFNAeKk~vg~Y~st~I~~F~mkC~~C~~~   48 (259)
                      .|-..||..|+.                 ++..+-+ |++.||.|++.
T Consensus        67 ~p~~~~C~~Cg~-----------------~~~~~~~-~~~~CP~Cgs~   96 (114)
T PRK03681         67 QEAECWCETCQQ-----------------YVTLLTQ-RVRRCPQCHGD   96 (114)
T ss_pred             eCcEEEcccCCC-----------------eeecCCc-cCCcCcCcCCC
Confidence            377889999985                 3332222 33679999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
1zso_A	164	Hypothetical protein; structural genomics, PSI, pr	89.49

>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1

Probab=89.49  E-value=0.27  Score=41.57  Aligned_cols=61  Identities=18%  Similarity=0.243  Sum_probs=40.1

Q ss_pred             cceecCCCCccccccccccc-eeeccCceeeeeeEEEEEEcCCCCceeEE--ecCCCCCCeeeecCc
Q 025008            3 FNIWCGGCNSMIAKGVRFNA-EKKQVGNYYSTKIWSFTMKSPCCKHQIVI--QTDPKNCEYVIISGA   66 (259)
Q Consensus         3 F~iwC~~C~~~I~kGvRFNA-eKk~vg~Y~st~I~~F~mkC~~C~~~i~i--kTDPkn~dYvv~~Ga   66 (259)
                      |.|.|+.|++---+ |-+|. ++..+..==|+  -.|.|||..|..+.+|  ...|.-+.|......
T Consensus        36 fkvkC~~C~E~~~k-v~v~~~e~~ei~gsRG~--aNfv~KCk~C~re~Si~i~~~~~~~~y~~~d~~   99 (164)
T 1zso_A           36 FNIRDSTSSLTRDN-IQFRKTDILEIPNSRGT--ANFMIKWTEYPKYSTINFVNTKNSCSYEEVNNN   99 (164)
T ss_dssp             EEEEETTSSCEEEE-EEECTTCBEECTTSSCE--ESEEECCSSSSCCEEEEEECCTTTTEEEGGGTT
T ss_pred             EEEEECCCCcccCC-EEEcchheeecCCCCcc--eeEEEeccccCCcceEEEEeCCCCcccccccCC
Confidence            78999999998777 88887 33333221122  4899999999876554  455521267664443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1zsoa1	156	Hypothetical protein MAL13P1.257 {Malaria parasite	86.97

>d1zsoa1 b.166.1.1 (A:1-156) Hypothetical protein MAL13P1.257 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: All beta proteins
fold: MAL13P1.257-like
superfamily: MAL13P1.257-like
family: MAL13P1.257-like
domain: Hypothetical protein MAL13P1.257
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.97  E-value=0.26  Score=39.32  Aligned_cols=59  Identities=19%  Similarity=0.256  Sum_probs=38.9

Q ss_pred             cceecCCCCccccccccccc-eeeccCceeeeeeEEEEEEcCCCCce--eEEecCCCCCCeeeec
Q 025008            3 FNIWCGGCNSMIAKGVRFNA-EKKQVGNYYSTKIWSFTMKSPCCKHQ--IVIQTDPKNCEYVIIS   64 (259)
Q Consensus         3 F~iwC~~C~~~I~kGvRFNA-eKk~vg~Y~st~I~~F~mkC~~C~~~--i~ikTDPkn~dYvv~~   64 (259)
                      |.|.|+.|++.- ..+-||. ++-.+..==|+  -.|.|||..|..+  |.|..++..+.|....
T Consensus        28 fkvkct~c~e~~-~~v~~~~~e~~e~~gsRG~--Anfv~KCk~C~re~si~i~~~~~~~~y~~~~   89 (156)
T d1zsoa1          28 FNIRDSTSSLTR-DNIQFRKTDILEIPNSRGT--ANFMIKWTEYPKYSTINFVNTKNSCSYEEVN   89 (156)
T ss_dssp             EEEEETTSSCEE-EEEEECTTCBEECTTSSCE--ESEEECCSSSSCCEEEEEECCTTTTEEEGGG
T ss_pred             EEEEECCCCcCc-CCeEEcCcceEEcCCCCcE--EEEEEECCCCCCeeeEEEEeCCCCccccccc
Confidence            789999999844 4477876 33333222333  4899999999765  6666555555666543