Citrus Sinensis ID: 025024

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVVLHYL
cccccccccccccccccccccccccEEcccccccHHHHHHHHccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEccEEEEcccccccccccccEEEEEEccccccHHHHHHccccccccccccccccccccccccccccEEEEEEcccccEEEEccc
ccccHHHHHHHHHcccccccccEcEEccccHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccccccHHHHHHcEEEEEEEEEEEcccccccccccccEcccccccccHHHHHHHHccccccccccccccHHHcccccHHHHccEEEEcccccEEEEEcc
MGAAGSKLEKAlgdqfpegeryfglenfgntcycnsvLQALYFCVPFREQLLDYYsnnknlgdaEENLLTCLADLFTQIRAQKkktgviapkRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEkeeaaksdpessspsektangptnglangvrkeplvTWVHKNFQGILTNETRCLRCETVTARDETFFDlsldieqnssiTSCLknfsstetlnaedkffcdkcCRLVIYTYICKSSVTDISCIVVVLHYL
mgaagsklekalgdqfpEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKkktgviapkrfvQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEaaksdpessspsektangptnglangvrkEPLVTWVHKNfqgiltnetrclRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYickssvtdisCIVVVLHYL
MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILekeeaaksdpessspsekTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVVLHYL
******************GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDIL******************************VRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVVLHY*
********************RYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQ*****VIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILE******************************RKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVI**Y***SSVTDISCIVVVLHYL
MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKE*******************PTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVVLHYL
**********ALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEA************KTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVVLHYL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVVLHYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query259 2.2.26 [Sep-21-2011]
Q8LAM0 365 Ubiquitin carboxyl-termin yes no 0.899 0.638 0.860 1e-116
O24454 371 Ubiquitin carboxyl-termin no no 0.907 0.633 0.841 1e-112
Q5RBQ4 366 Ubiquitin carboxyl-termin yes no 0.853 0.603 0.581 2e-72
P62069 366 Ubiquitin carboxyl-termin yes no 0.853 0.603 0.581 2e-72
P62068 366 Ubiquitin carboxyl-termin yes no 0.853 0.603 0.581 2e-72
A4FUN7 371 Ubiquitin carboxyl-termin yes no 0.853 0.595 0.583 1e-71
C0HB46 372 Ubiquitin carboxyl-termin N/A no 0.857 0.596 0.575 1e-71
Q9D9M2 370 Ubiquitin carboxyl-termin no no 0.849 0.594 0.575 4e-71
A5D9H7 369 Ubiquitin carboxyl-termin no no 0.837 0.588 0.565 3e-70
A5WWB0 370 Ubiquitin carboxyl-termin no no 0.841 0.589 0.568 4e-70
>sp|Q8LAM0|UBP4_ARATH Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana GN=UBP4 PE=1 SV=2 Back     alignment and function desciption
 Score =  416 bits (1069), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/236 (86%), Positives = 215/236 (91%), Gaps = 3/236 (1%)

Query: 1   MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKN 60
           MGAAGSKLEKALGDQFPEGERYFG ENFGNTCYCNSVLQALYFC PFREQLL++Y+NNK 
Sbjct: 1   MGAAGSKLEKALGDQFPEGERYFGFENFGNTCYCNSVLQALYFCAPFREQLLEHYANNK- 59

Query: 61  LGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFL 120
             DAEENLLTCLADLF+QI +QKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLN+L
Sbjct: 60  -ADAEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYL 118

Query: 121 LNELVDILEKE-EAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNE 179
           LNELV+ILEKE +A K+D E+SS  EK AN     LANGV KEP+VTWVHK FQGILTNE
Sbjct: 119 LNELVEILEKETQATKADNETSSSPEKIANVLKAPLANGVHKEPIVTWVHKIFQGILTNE 178

Query: 180 TRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRL 235
           TRCLRCETVTARDETF DLSLDIEQNSSITSCLKNFSSTETL+AEDKFFCDKCC L
Sbjct: 179 TRCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLHAEDKFFCDKCCSL 234
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Required for the correct development of pollen.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|O24454|UBP3_ARATH Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana GN=UBP3 PE=1 SV=1 Back     alignment and function description
>sp|Q5RBQ4|UBP46_PONAB Ubiquitin carboxyl-terminal hydrolase 46 OS=Pongo abelii GN=USP46 PE=2 SV=1 Back     alignment and function description
>sp|P62069|UBP46_MOUSE Ubiquitin carboxyl-terminal hydrolase 46 OS=Mus musculus GN=Usp46 PE=1 SV=1 Back     alignment and function description
>sp|P62068|UBP46_HUMAN Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo sapiens GN=USP46 PE=1 SV=1 Back     alignment and function description
>sp|A4FUN7|UBP12_DANRE Ubiquitin carboxyl-terminal hydrolase 12A OS=Danio rerio GN=usp12a PE=2 SV=1 Back     alignment and function description
>sp|C0HB46|UBP12_SALSA Ubiquitin carboxyl-terminal hydrolase 12 OS=Salmo salar GN=usp12 PE=2 SV=1 Back     alignment and function description
>sp|Q9D9M2|UBP12_MOUSE Ubiquitin carboxyl-terminal hydrolase 12 OS=Mus musculus GN=Usp12 PE=2 SV=2 Back     alignment and function description
>sp|A5D9H7|UBP12_BOVIN Ubiquitin carboxyl-terminal hydrolase 12 OS=Bos taurus GN=USP12 PE=2 SV=1 Back     alignment and function description
>sp|A5WWB0|UBP46_DANRE Ubiquitin carboxyl-terminal hydrolase 46 OS=Danio rerio GN=usp46 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
225468498 369 PREDICTED: ubiquitin carboxyl-terminal h 0.907 0.636 0.923 1e-125
356540277 369 PREDICTED: ubiquitin carboxyl-terminal h 0.907 0.636 0.915 1e-125
297742872331 unnamed protein product [Vitis vinifera] 0.907 0.709 0.923 1e-125
255580900 369 Ubiquitin carboxyl-terminal hydrolase, p 0.907 0.636 0.923 1e-125
224093752 370 predicted protein [Populus trichocarpa] 0.907 0.635 0.911 1e-124
224081136 370 predicted protein [Populus trichocarpa] 0.907 0.635 0.911 1e-124
449438831 369 PREDICTED: ubiquitin carboxyl-terminal h 0.907 0.636 0.911 1e-124
356512699 369 PREDICTED: ubiquitin carboxyl-terminal h 0.907 0.636 0.902 1e-122
356525469 369 PREDICTED: ubiquitin carboxyl-terminal h 0.907 0.636 0.902 1e-122
147810044 366 hypothetical protein VITISV_006756 [Viti 0.895 0.633 0.911 1e-122
>gi|225468498|ref|XP_002270407.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/236 (92%), Positives = 224/236 (94%), Gaps = 1/236 (0%)

Query: 1   MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKN 60
           MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLL+YY+NNKN
Sbjct: 1   MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYTNNKN 60

Query: 61  LGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFL 120
           L DAEENLLTCLADLF QI +QKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFL
Sbjct: 61  LADAEENLLTCLADLFMQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFL 120

Query: 121 LNELVDILEKE-EAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNE 179
           LNELVDILEKE  A+KSDPE+SSP EKTANGP    ANGV+KEPLVTWVHKNFQGILTNE
Sbjct: 121 LNELVDILEKEASASKSDPETSSPPEKTANGPKTAQANGVQKEPLVTWVHKNFQGILTNE 180

Query: 180 TRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRL 235
           TRCLRCETVTARDETF DLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCC L
Sbjct: 181 TRCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSL 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356540277|ref|XP_003538616.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Glycine max] Back     alignment and taxonomy information
>gi|297742872|emb|CBI35637.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255580900|ref|XP_002531269.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] gi|223529154|gb|EEF31133.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224093752|ref|XP_002309976.1| predicted protein [Populus trichocarpa] gi|222852879|gb|EEE90426.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224081136|ref|XP_002306306.1| predicted protein [Populus trichocarpa] gi|222855755|gb|EEE93302.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449438831|ref|XP_004137191.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like [Cucumis sativus] gi|449524412|ref|XP_004169217.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356512699|ref|XP_003525054.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356525469|ref|XP_003531347.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|147810044|emb|CAN67091.1| hypothetical protein VITISV_006756 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
TAIR|locus:2140074 371 UBP3 "ubiquitin-specific prote 0.907 0.633 0.799 1.2e-99
UNIPROTKB|P62068 366 USP46 "Ubiquitin carboxyl-term 0.853 0.603 0.572 2.2e-66
UNIPROTKB|Q5RBQ4 366 USP46 "Ubiquitin carboxyl-term 0.853 0.603 0.572 2.2e-66
MGI|MGI:1916977 366 Usp46 "ubiquitin specific pept 0.853 0.603 0.572 2.2e-66
RGD|1564808 366 Usp46 "ubiquitin specific pept 0.853 0.603 0.572 2.2e-66
UNIPROTKB|E1C8J6 366 USP46 "Ubiquitin carboxyl-term 0.853 0.603 0.568 2.8e-66
UNIPROTKB|F1M625 365 Usp46 "Ubiquitin carboxyl-term 0.853 0.605 0.568 5.8e-66
UNIPROTKB|F1MZM8 382 USP46 "Ubiquitin carboxyl-term 0.849 0.575 0.570 7.4e-66
UNIPROTKB|I3LLE9 354 USP46 "Uncharacterized protein 0.849 0.621 0.570 7.4e-66
MGI|MGI:1270128 370 Usp12 "ubiquitin specific pept 0.849 0.594 0.570 1.5e-65
TAIR|locus:2140074 UBP3 "ubiquitin-specific protease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
 Identities = 191/239 (79%), Positives = 203/239 (84%)

Query:     1 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKN 60
             MGAAGSKLEKALGDQFPEGERYFG ENFGNTCYCNSVLQALYFCVPFREQLL+YY++NK+
Sbjct:     1 MGAAGSKLEKALGDQFPEGERYFGFENFGNTCYCNSVLQALYFCVPFREQLLEYYTSNKS 60

Query:    61 LGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFL 120
             + DAEENL+TCLADLF+QI +QKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLN+L
Sbjct:    61 VADAEENLMTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYL 120

Query:   121 LNELVDILXXXXXXXXXXXXXXXXXXT---ANGPTNGLANGV-RKEPLVTWVHKNFQGIL 176
             LNE+VDIL                      ANG     ANGV  KEP+VTWVH  FQGIL
Sbjct:   121 LNEVVDILEKEAKATKTEHETSSSSSPEKIANGLKVPQANGVVHKEPIVTWVHNIFQGIL 180

Query:   177 TNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRL 235
             TNETRCLRCETVTARDETF DLSLDIEQNSSITSCLKNFSSTETL+AEDKFFCDKCC L
Sbjct:   181 TNETRCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLHAEDKFFCDKCCSL 239
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0004843 "ubiquitin-specific protease activity" evidence=ISS;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0009755 "hormone-mediated signaling pathway" evidence=RCA
GO:0005634 "nucleus" evidence=IDA
UNIPROTKB|P62068 USP46 "Ubiquitin carboxyl-terminal hydrolase 46" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RBQ4 USP46 "Ubiquitin carboxyl-terminal hydrolase 46" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
MGI|MGI:1916977 Usp46 "ubiquitin specific peptidase 46" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1564808 Usp46 "ubiquitin specific peptidase 46" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8J6 USP46 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1M625 Usp46 "Ubiquitin carboxyl-terminal hydrolase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MZM8 USP46 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LLE9 USP46 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1270128 Usp12 "ubiquitin specific peptidase 12" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P62068UBP46_HUMAN3, ., 4, ., 1, 9, ., 1, 20.58110.85320.6038yesno
P62069UBP46_MOUSE3, ., 4, ., 1, 9, ., 1, 20.58110.85320.6038yesno
Q8LAM0UBP4_ARATH3, ., 4, ., 1, 9, ., 1, 20.86010.89960.6383yesno
Q5RBQ4UBP46_PONAB3, ., 4, ., 1, 9, ., 1, 20.58110.85320.6038yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.963
3rd Layer3.4.19.120.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 6e-98
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 2e-57
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 2e-28
cd02659 334 cd02659, peptidase_C19C, A subfamily of Peptidase 3e-25
cd02671 332 cd02671, Peptidase_C19O, A subfamily of Peptidase 3e-24
cd02668 324 cd02668, Peptidase_C19L, A subfamily of Peptidase 1e-22
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 3e-20
cd02257 255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 3e-18
cd02667 279 cd02667, Peptidase_C19K, A subfamily of Peptidase 1e-17
cd02664 327 cd02664, Peptidase_C19H, A subfamily of Peptidase 3e-17
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 8e-17
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 1e-14
COG5560 823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 8e-13
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 5e-12
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 3e-11
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 2e-10
cd02669 440 cd02669, Peptidase_C19M, A subfamily of Peptidase 1e-09
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 1e-09
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 5e-09
COG5207 749 COG5207, UBP14, Isopeptidase T [Posttranslational 3e-08
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 3e-06
cd02666 343 cd02666, Peptidase_C19J, A subfamily of Peptidase 3e-06
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 7e-04
cd02672268 cd02672, Peptidase_C19P, A subfamily of Peptidase 9e-04
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  288 bits (739), Expect = 6e-98
 Identities = 122/212 (57%), Positives = 145/212 (68%), Gaps = 36/212 (16%)

Query: 24  GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQK 83
           GLENFGNTCYCNSVLQALYF                      ENLLTCL DLF  I  QK
Sbjct: 1   GLENFGNTCYCNSVLQALYF----------------------ENLLTCLKDLFESISEQK 38

Query: 84  KKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSP 143
           K+TGVI+PK+F+ RLK++NELF +YMHQDAHEFLNFLLNE+ +IL+ E  A+      + 
Sbjct: 39  KRTGVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLN- 97

Query: 144 SEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIE 203
                        N    EP  TWVH+ FQGILTNETRCL CETV++RDETF DLS+D+E
Sbjct: 98  -------------NNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVE 144

Query: 204 QNSSITSCLKNFSSTETLNAEDKFFCDKCCRL 235
           QN+SITSCL+ FS+TETL   +KF+CD+CC L
Sbjct: 145 QNTSITSCLRQFSATETLCGRNKFYCDECCSL 176

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 300
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 259
cd02663 300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
KOG1865 545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02671 332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02660 328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02668 324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
COG5560 823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
cd02664 327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02659 334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02667 279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
KOG0944 763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
KOG1868 653 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
cd02666 343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 99.97
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 99.96
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 99.96
COG5207 749 UBP14 Isopeptidase T [Posttranslational modificati 99.96
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 99.95
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 99.95
KOG1867 492 consensus Ubiquitin-specific protease [Posttransla 99.94
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 99.94
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 99.93
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 99.93
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 99.9
cd02257 255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 99.89
KOG1873 877 consensus Ubiquitin-specific protease [Posttransla 99.88
cd02672 268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 99.87
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 99.86
KOG1864 587 consensus Ubiquitin-specific protease [Posttransla 99.86
KOG1871 420 consensus Ubiquitin-specific protease [Posttransla 99.85
KOG1870 842 consensus Ubiquitin C-terminal hydrolase [Posttran 99.83
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 99.77
KOG1872 473 consensus Ubiquitin-specific protease [Posttransla 99.45
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 99.31
cd02670 241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 98.95
KOG1864 587 consensus Ubiquitin-specific protease [Posttransla 97.97
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 96.74
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 96.42
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 96.29
KOG1873 877 consensus Ubiquitin-specific protease [Posttransla 95.73
PF08715320 Viral_protease: Papain like viral protease; InterP 87.5
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information 
Probab=100.00  E-value=8.7e-44  Score=300.98  Aligned_cols=195  Identities=65%  Similarity=1.093  Sum_probs=166.2

Q ss_pred             ccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHHhhcc
Q 025024           24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE  103 (259)
Q Consensus        24 GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~~~~~  103 (259)
                      ||.|+||||||||+||+|++                      .+++++|+.+|..|+......+.++|..|+.+++..++
T Consensus         1 Gl~NlGnTCY~NsvLQ~L~~----------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~   58 (300)
T cd02663           1 GLENFGNTCYCNSVLQALYF----------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENE   58 (300)
T ss_pred             CccCCCcceehhHHHHHhhh----------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcC
Confidence            99999999999999999987                      56889999999999988666667999999999999999


Q ss_pred             ccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeeeeeeec
Q 025024          104 LFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCL  183 (259)
Q Consensus       104 ~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~i~C~  183 (259)
                      .|.++.||||||||..|||.||+++....+......              ...+........++|.++|+|++.++++|.
T Consensus        59 ~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~  124 (300)
T cd02663          59 LFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANR--------------KLNNNNNAEPQPTWVHEIFQGILTNETRCL  124 (300)
T ss_pred             CCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccc--------------cccccccCCcCCCChhhhCceEEEeeEEeC
Confidence            999999999999999999999999987644332110              001112223456889999999999999999


Q ss_pred             cCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchheecc
Q 025024          184 RCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVVLH  257 (259)
Q Consensus       184 ~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~i~h  257 (259)
                      .|++.+.++|+|++|+|+|++..+|++||+.|+++|.++|+++|+|++|++++.+++.  ..+..+|++ |++|
T Consensus       125 ~C~~~s~~~e~f~~Lsl~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~--~~i~~lP~v-Lii~  195 (300)
T cd02663         125 TCETVSSRDETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKR--MKIKKLPKI-LALH  195 (300)
T ss_pred             CCCCCccccceeEEeccCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEE--EEeccCCce-eEEE
Confidence            9999999999999999999999999999999999999999999999999999998873  444555554 5555

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 7e-12
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 5e-11
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 5e-11
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 1e-10
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 1e-10
4fip_A 476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 6e-09
3m99_A 471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 2e-08
3mhh_A 476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 2e-08
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 4e-08
2hd5_A 359 Usp2 In Complex With Ubiquitin Length = 359 5e-08
2y6e_A 367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 1e-07
2ibi_A 374 Covalent Ubiquitin-Usp2 Complex Length = 374 2e-07
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 8e-07
1nbf_A 353 Crystal Structure Of A Ubp-Family Deubiquitinating 2e-06
2f1z_A 522 Crystal Structure Of Hausp Length = 522 3e-06
3ihp_A 854 Covalent Ubiquitin-Usp5 Complex Length = 854 2e-05
1nb8_A 353 Structure Of The Catalytic Domain Of Usp7 (Hausp) L 5e-05
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure 
Iteration: 1

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 93/230 (40%), Gaps = 30/230 (13%)
Query: 19  GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYS--------NNKNL----GDAEE 66
           G    GL N GNTCY NS+LQ    C+     L DY++        N  NL    G+  E
Sbjct: 59  GPALTGLRNLGNTCYMNSILQ----CLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAE 114
Query: 67  NLLTCLADLFT-QIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELV 125
                +  L+T Q R        I+PK F   + K N+ F  Y  QD+ E L FL++ L 
Sbjct: 115 EFGIIMKALWTGQYR-------YISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLH 167
Query: 126 DILXXXXXXXXXXXXXXXXXXTANGPTNGLANGVR-KEPLVTWVHKNFQGILTNETRCLR 184
           + L                        +      +  E ++  +   FQG   +  +CL 
Sbjct: 168 EDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVAL---FQGQFKSTVQCLT 224
Query: 185 CETVTARDETFFDLSLDIEQNS--SITSCLKNFSSTETLNAEDKFFCDKC 232
           C   +   E F  LSL +   S  ++  CL+ FS  E L   ++F+C  C
Sbjct: 225 CHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHC 274
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex Length = 854 Back     alignment and structure
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 3e-62
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 8e-60
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 2e-56
3mhs_A 476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 7e-54
2ayn_A 404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 5e-52
1nb8_A 353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 5e-46
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 1e-44
2y6e_A 367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 3e-41
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 5e-41
1vjv_A 415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 3e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
2vhf_A 374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 2e-07
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
 Score =  198 bits (504), Expect = 3e-62
 Identities = 53/219 (24%), Positives = 90/219 (41%), Gaps = 9/219 (4%)

Query: 24  GLENFGNTCYCNSVLQALYFCVPFREQLL--DYYSNNKNLGDAEENLLTCLADLFTQIRA 81
           GL N GNTC+ NS+LQ L      R+  L   Y  +  +  +A   L+   A L   I  
Sbjct: 11  GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWT 70

Query: 82  QKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESS 141
                 V++P  F  ++++    F  Y  QDA EFL FLL+ L + + +          +
Sbjct: 71  SSP-NDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPEN 129

Query: 142 SPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLD 201
                            + +E   + +   F G L +   C  C   +   + F+DLSL 
Sbjct: 130 LDHLPDDEKGRQMWRKYLERED--SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLP 187

Query: 202 IEQNS----SITSCLKNFSSTETLNAEDKFFCDKCCRLV 236
           I +      ++  C++ F+  + L+ ++K  C +C    
Sbjct: 188 IAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRK 226
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Length = 374 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
2y6e_A 367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
3nhe_A 348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
1nb8_A 353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
2ayn_A 404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
3mhs_A 476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
1vjv_A 415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
2vhf_A 374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.74
1qmy_A167 Protease, leader protease; hydrolase, sulfhydryl p 91.63
3mp2_A211 Non-structural protein 3; papain-like protease, TG 84.0
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.5e-47  Score=331.78  Aligned_cols=234  Identities=23%  Similarity=0.383  Sum_probs=179.3

Q ss_pred             CCCCCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcC----CCCCCcchhhHHHHHHHHHHHHHhcccCccccCcH
Q 025024           17 PEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSN----NKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPK   92 (259)
Q Consensus        17 ~~~~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~----~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~   92 (259)
                      +..++++||.|+||||||||+||+|+++|+|+++++.....    ...+......++.+|+.||..||.+..  ..++|.
T Consensus         3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~--~~i~P~   80 (367)
T 2y6e_A            3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRD--AHVAPR   80 (367)
T ss_dssp             -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSC--SEECCH
T ss_pred             CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCC--CCcCHH
Confidence            34567999999999999999999999999999999875322    112333456899999999999998743  469999


Q ss_pred             HHHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCcccccccccc
Q 025024           93 RFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNF  172 (259)
Q Consensus        93 ~l~~~~~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF  172 (259)
                      .|+.+++...+.|.+++||||||||.+|||.||++++...............  ..........|........++|.++|
T Consensus        81 ~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g--~~~~~~a~~~w~~~~~~~~s~i~~~F  158 (367)
T 2y6e_A           81 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANG--RPDAVVAKEAWENHRLRNDSVIVDTF  158 (367)
T ss_dssp             HHHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCS--CCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccC--CchhHHHHHHHHHHHHhcCCcccccc
Confidence            9999999999999999999999999999999999886533222110000000  00000000112222234568899999


Q ss_pred             ceeeeeeeeeccCCCccccccCceEeeeecCCC-------------------CCHHHHHhhccccceeCCCCccccccCC
Q 025024          173 QGILTNETRCLRCETVTARDETFFDLSLDIEQN-------------------SSITSCLKNFSSTETLNAEDKFFCDKCC  233 (259)
Q Consensus       173 ~g~~~~~i~C~~C~~~s~~~e~f~~L~L~i~~~-------------------~sL~~~L~~~~~~e~l~~~~~~~C~~C~  233 (259)
                      +|+++++++|..|++++.++|+|+.|+|+||..                   .+|++||+.|+++|.++|+|+|+|++|+
T Consensus       159 ~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~  238 (367)
T 2y6e_A          159 HGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCK  238 (367)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTT
T ss_pred             CcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCC
Confidence            999999999999999999999999999999853                   4899999999999999999999999999


Q ss_pred             Ccceeeeeeccccccccchheecc
Q 025024          234 RLVIYTYICKSSVTDISCIVVVLH  257 (259)
Q Consensus       234 ~~~~~~~~~~~~~~~~p~~l~i~h  257 (259)
                      +++.+++  +..+..+|++| +||
T Consensus       239 ~~~~a~K--~~~i~~lP~vL-~i~  259 (367)
T 2y6e_A          239 KHQQATK--KFDLWSLPKIL-VVH  259 (367)
T ss_dssp             EEECCEE--EEEEEECCSEE-EEE
T ss_pred             CCceEEE--EEEEecCCcEE-EEE
Confidence            9999887  44556666654 444
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 259
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 1e-31
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 5e-30
d2ayna1 383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 1e-24
d1nbfa_ 347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7e-22
d1vjva_ 397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 5e-20
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (292), Expect = 1e-31
 Identities = 57/228 (25%), Positives = 88/228 (38%), Gaps = 10/228 (4%)

Query: 19  GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDY----YSNNKNLGDAEENLLTCLAD 74
           G    GL N GNTCY NS+LQ L       +           N  NL   +  +      
Sbjct: 12  GPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGI 71

Query: 75  LFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAA 134
           +   +     +   I+PK F   + K N+ F  Y  QD+ E L FL++ L + L K +  
Sbjct: 72  IMKAL--WTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 129

Query: 135 KSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDET 194
           K   E ++          +       K+   + +   FQG   +  +CL C   +   E 
Sbjct: 130 KRYKEENNDHLDDFKAAEHAWQK--HKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEA 187

Query: 195 FFDLSLDIEQ--NSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTY 240
           F  LSL +      ++  CL+ FS  E L   ++F+C  C        
Sbjct: 188 FMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLK 235
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
d1nbfa_ 347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d2ayna1 383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d1vjva_ 397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 99.94
d1qmya_156 FMDV leader protease {Foot-and-mouth disease virus 92.86
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-37  Score=265.43  Aligned_cols=195  Identities=21%  Similarity=0.392  Sum_probs=161.6

Q ss_pred             CCCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHH
Q 025024           19 GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRL   98 (259)
Q Consensus        19 ~~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~   98 (259)
                      -+|++||.|+||||||||+||+|+++|+|+++++....   .......++..+|+++|..|+.+.   .++.|..++..+
T Consensus         3 ~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~---~~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~~~~~~   76 (347)
T d1nbfa_           3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPT---EGDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSF   76 (347)
T ss_dssp             SSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCC---TTCCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHHHHT
T ss_pred             CCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCc---cCCcccchHHHHHHHHHHHHhcCC---CCcChHHHHHhh
Confidence            36799999999999999999999999999999986533   223345678999999999999874   358898888777


Q ss_pred             HhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeee
Q 025024           99 KKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTN  178 (259)
Q Consensus        99 ~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~  178 (259)
                      .  ...|..+.||||+||+..||+.|++++...                               ...++|.++|+|.+.+
T Consensus        77 ~--~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~-------------------------------~~~~~i~~lF~g~~~~  123 (347)
T d1nbfa_          77 G--WETLDSFMQHDVQELCRVLLDNVENKMKGT-------------------------------CVEGTIPKLFRGKMVS  123 (347)
T ss_dssp             T--CCGGGGGSCBCHHHHHHHHHHHHHHHHTTS-------------------------------TTTTHHHHHHCEEEEE
T ss_pred             c--hhhcchHHHHHHHHHHHHHHHHHHHHHhhc-------------------------------cccccccceeceEEEE
Confidence            5  355888999999999999999999887532                               1236799999999999


Q ss_pred             eeeeccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchhee
Q 025024          179 ETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVV  255 (259)
Q Consensus       179 ~i~C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~i  255 (259)
                      .++|..|++.+.++|+|+.|+|+++...+++++|+.++..|.++|++.+.|..| +...+.+  +..+..+|++|+|
T Consensus       124 ~~~C~~C~~~s~~~e~f~~l~L~i~~~~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k--~~~i~~lP~vL~i  197 (347)
T d1nbfa_         124 YIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEK--GVKFLTLPPVLHL  197 (347)
T ss_dssp             EEEESSSCCEEEEEEEESSEEEECTTCCBHHHHHHHHTCCEEECGGGCEECSTT-CEECEEE--EEEEEECCSEEEE
T ss_pred             eEEeCCccceeeeeccccccccccccccchhhhHHhhcchheeccccccccccC-cceeccE--EEEEEecCChheE
Confidence            999999999999999999999999999999999999999999999888877766 4455554  2344555555543
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]} Back     information, alignment and structure