Citrus Sinensis ID: 025039

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MDADQNPKASEKKTIGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEMD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHcccccccccEEEEcccccHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHcccccEEEEEEEccccccccccEEEEEEcccHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccEEEEEEEEcccEEEEEEEEEEcccccHHHHHHHHcccccccccHHHHHcccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHcccHHHHHHHHccccccHHHccHHHHHHHHHHHccccccEEEEEccccHccHHHHHcccccEEEEcccHHHHHHHHHHHHHccccccEEEEEEccccccccccccEEEEcccHHHHEccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHccccccEEEEEEEccccEEEEEEEEccccccHHHHHHHcccccccccccccccccccccEEEEEcccccc
Coil and Loop (DISEMBL)
mdadqnpkasekktigppttsayldphywderfsdeeHYEWLKDYSHfrhlvqphikpnssvlelgcgnsrlseglyndgitaiTCIDLSAVAVEKMQERLLLKGYKEVKVLEadmldlpfsndcfDVVIEKATMEVLFvnsgdpwnpqpeTVTKVMAMLEGVHrvlkpdglfisvsfgqphfrrpffnapqftwsvewitfgdgFHYFFYILRkgkrssadeelsqshdkplvptismfheelegedyifrtnidemd
Flexible Loop (DISEMBL)
mdadqnpkasekktigppttsayldpHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFvnsgdpwnpQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEElsqshdkplvptismfheelegedyifrtnidemd
Low Complexity Region (SEG)
MDADQNPKASEKKTIGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEMD
Disordered region (IsUnstruct)
*********************AYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILR************************MFH**LEGEDYIFR*******
Disordered Region (DISOPRED)
**********************YLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYI*****************************EELEGEDYIFRTNID***
Disordered Region (DISEMBL)
**************IGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKG*************DKPLVPTISMFHEELEGEDYIFRTNIDEMD
Disordered Region (DISPRO)
*************TIGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEE***SHDKPLVPTISMFHEELEGEDYIFRTNI****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDADQNPKASEKKTIGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEMD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q10711	883	Endothelin-converting enz	yes	no	0.536	0.157	0.373	7e-21
O60344	883	Endothelin-converting enz	no	no	0.590	0.173	0.353	1e-20
Q80Z60	881	Endothelin-converting enz	no	no	0.625	0.183	0.355	1e-20
Q9VIK9	673	Methyltransferase-like pr	yes	no	0.617	0.237	0.331	1e-19
Q91YR5	698	Methyltransferase-like pr	no	no	0.610	0.226	0.315	1e-17
A5PK19	699	Methyltransferase-like pr	no	no	0.613	0.227	0.309	2e-17
Q29LW1	673	Methyltransferase-like pr	yes	no	0.617	0.237	0.325	2e-17
Q6NTR1	693	Methyltransferase-like pr	N/A	no	0.613	0.229	0.321	5e-17
Q8N6R0	699	Methyltransferase-like pr	no	no	0.617	0.228	0.301	5e-17
A5WVX1	690	Methyltransferase-like pr	no	no	0.602	0.226	0.291	9e-14

>sp|Q10711|ECE2_BOVIN Endothelin-converting enzyme 2 OS=Bos taurus GN=ECE2 PE=1 SV=2

 Score =  101 bits (251), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 78/150 (52%), Gaps = 11/150 (7%)

Query: 17  PPTTSAYLDPHYWDERF---SDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLS 73
           P     Y +  YWD+R+   +D   YEW  D+S FR L++P ++P   +L LGCGNS LS
Sbjct: 14  PEKNCGYREVQYWDQRYQGAADSAPYEWFGDFSCFRDLLEPELRPLDRILVLGCGNSALS 73

Query: 74  EGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD---LPFSNDCFDVVI 130
             L+  G   +T +D S+V V  M+ R     Y  V  L  + +D   L F +  FDVV+
Sbjct: 74  YELFLGGFPDVTSVDYSSVVVAAMRAR-----YAHVPTLRWETMDVRALGFPSGSFDVVL 128

Query: 131 EKATMEVLFVNSGDPWNPQPETVTKVMAML 160
           EK T++ L     DPW    E V  V  +L
Sbjct: 129 EKGTLDALLTGEQDPWTVSSEGVHTVDQVL 158

Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: 7EC: 1

>sp|O60344|ECE2_HUMAN Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 82/164 (50%), Gaps = 11/164 (6%)

Query: 6   NPKASEKKTIGPPTTSAYLDPHYWDERF---SDEEHYEWLKDYSHFRHLVQPHIKPNSSV 62
           +P A       P     Y +  YWD+R+   +D   Y+W  D+S FR L++P ++P   +
Sbjct: 3   SPGAGRAPPELPERNCGYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRI 62

Query: 63  LELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD---L 119
           L LGCGNS LS  L+  G   +T +D S+V V  MQ R     +  V  L  + +D   L
Sbjct: 63  LVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQAR-----HAHVPQLRWETMDVRKL 117

Query: 120 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGV 163
            F +  FDVV+EK T++ L     DPW    E V  V  +L  V
Sbjct: 118 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEV 161

Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 7

EC: 1

>sp|Q80Z60|ECE2_MOUSE Endothelin-converting enzyme 2 OS=Mus musculus GN=Ece2 PE=2 SV=2

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 85/177 (48%), Gaps = 15/177 (8%)

Query: 9   ASEKKTIGPP----TTSAYLDPHYWDERFSDEEH---YEWLKDYSHFRHLVQPHIKPNSS 61
           AS +  + PP        Y    YWD+R+ D      YEW  D++ FR L++P + P   
Sbjct: 2   ASPRTPVSPPELPEKNFQYRQVQYWDQRYKDAADSGPYEWFGDFASFRALLEPELCPEDR 61

Query: 62  VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--- 118
           +L LGCGNS LS  L+  G   +T +D S V V  MQ R     Y  V  L  + +D   
Sbjct: 62  ILVLGCGNSALSYELFLGGFPNVTSVDYSPVVVAAMQVR-----YAHVPSLRWETMDVRA 116

Query: 119 LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175
           L F +  FDVV+EK T++ +     DPWN   E V  V  +L  V    +   LF S
Sbjct: 117 LDFPSGSFDVVLEKGTLDAMLAGEPDPWNVSSEGVHTVDQVLSEVGFQKRTRQLFGS 173

Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 7

EC: 1

>sp|Q9VIK9|MET13_DROME Methyltransferase-like protein 13 OS=Drosophila melanogaster GN=CG2614 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 9/169 (5%)

Query: 17  PPTTSAYLDPHYWDERFSD--EEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSE 74
           P T   +    YW+E F    E+ +EW  +Y      +  +IKP   +L LGCGNS+LS 
Sbjct: 5   PKTREEFAQTDYWNEFFKKRGEKAFEWYGEYLELCDQIHKYIKPADRILMLGCGNSKLSM 64

Query: 75  GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 134
            +Y+ G   IT ID+S +AV+KM E L  K   E+K L+ D   + F ++ F V ++K T
Sbjct: 65  DMYDTGFRDITNIDISPIAVKKMLE-LNAKSRPEMKFLQMDATAMTFPDESFSVSLDKGT 123

Query: 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 183
           ++ LF +       +PET   V    + + R ++  G ++ +S  Q H 
Sbjct: 124 LDALFADD------EPETRAVVENYFKEILRTMRNGGRYVGISLLQEHI 166

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q91YR5|MET13_MOUSE Methyltransferase-like protein 13 OS=Mus musculus GN=Mettl13 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 17  PPTTSAYLDPHYWDERFSD--EEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSE 74
           P ++  +    YW++ F    +  +EW   Y     ++  +IKP   VL +GCGNS LSE
Sbjct: 5   PKSSKEFGSADYWEKFFQQRGKTAFEWYGTYLELCEVLHKYIKPKEKVLVIGCGNSELSE 64

Query: 75  GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLPFSNDCFDVVIEK 132
            LY+ G   I  ID+S V +++M+ER    G +   +  L+ DM  L F +  F VV++K
Sbjct: 65  QLYDVGYQDIVNIDISEVVIKQMKER---NGSRRPHMSFLKMDMTQLEFPDATFQVVLDK 121

Query: 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 183
            T++ +  +       +  T+ +V  ML  V RVL+  G ++ +S  Q H 
Sbjct: 122 GTLDAVLTDE------EEVTLRQVDRMLAEVGRVLQVGGRYLCISLAQAHI 166

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A5PK19|MET13_BOVIN Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 9/168 (5%)

Query: 17  PPTTSAYLDPHYWDERFSD--EEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSE 74
           P ++  +    YW++ F    ++ +EW   Y     ++  +IKP   VL +GCGNS LSE
Sbjct: 5   PKSSKEFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPREKVLVVGCGNSELSE 64

Query: 75  GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 134
            LY+ G   I  ID+S V +++M+ER   +    +  L+ DM  + F +  F VV++K T
Sbjct: 65  QLYDVGYQDIVNIDISEVVIKQMKERNASR-RPRMSFLKMDMTQMEFPDASFQVVLDKGT 123

Query: 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182
           ++ +  +       + +T+ +V  ML  V RVL+  G ++ +S  Q H
Sbjct: 124 LDAVLTDE------EEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAH 165

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q29LW1|MTE13_DROPS Methyltransferase-like protein 13 OS=Drosophila pseudoobscura pseudoobscura GN=GA15401 PE=3 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 9/169 (5%)

Query: 17  PPTTSAYLDPHYWDERFSD--EEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSE 74
           P T   +    YW+E F    E+ +EW  +Y      +  +IKP   +L LGCGNS+LS 
Sbjct: 5   PKTREEFAQTDYWNEFFKKRGEKAFEWYGEYLDLCDHIHKYIKPVDKILMLGCGNSKLSM 64

Query: 75  GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 134
            +Y+     IT ID+S VAV+KM E+   +   ++K L+ D   + F ++ F V ++K T
Sbjct: 65  DMYDSEYRDITNIDISPVAVKKMLEQ-NARTRPDMKFLQMDATAMTFPDESFSVALDKGT 123

Query: 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 183
           ++ LFV+        PET   V    + + R ++  G +  VS  Q H 
Sbjct: 124 LDALFVDDA------PETKAVVENYFKEILRTMRNGGRYFCVSLLQEHI 166

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6NTR1|MET13_XENLA Methyltransferase-like protein 13 OS=Xenopus laevis GN=mettl13 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 17  PPTTSAYLDPHYWDE--RFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSE 74
           P ++  +  P YW++  R   E  +EW   Y     L+  +IKP   V  +GCGNS LSE
Sbjct: 5   PKSSKEFAAPEYWEQFFRRRGERAFEWYGGYLELCGLLHKYIKPRDKVFVVGCGNSELSE 64

Query: 75  GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 134
            LY+ G   +T ID+S V + +M ER   +    +     D     F + CF  V++K T
Sbjct: 65  QLYDAGCQNLTNIDVSEVVIRQMNERNSNR-RPNMTFQVMDATQTTFDDSCFQAVLDKGT 123

Query: 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182
           ++ +     D      ET  K+M+    + RVL   G F+ VS  Q H
Sbjct: 124 LDAIMT---DTDKGTLETADKLMSE---IGRVLTCGGRFLCVSLAQAH 165

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8N6R0|MET13_HUMAN Methyltransferase-like protein 13 OS=Homo sapiens GN=METTL13 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 89/169 (52%), Gaps = 9/169 (5%)

Query: 17  PPTTSAYLDPHYWDERFSD--EEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSE 74
           P ++  +    YW++ F    ++ +EW   Y     ++  +IKP   VL +GCGNS LSE
Sbjct: 5   PKSSREFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPREKVLVIGCGNSELSE 64

Query: 75  GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 134
            LY+ G   I  ID+S V +++M+E    +   ++  L+ DM  + F +  F VV++K T
Sbjct: 65  QLYDVGYRDIVNIDISEVVIKQMKECNATR-RPQMSFLKMDMTQMEFPDASFQVVLDKGT 123

Query: 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 183
           ++ +  +       + +T+ +V  ML  V RVL+  G ++ +S  Q H 
Sbjct: 124 LDAVLTDE------EEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHI 166

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A5WVX1|MET13_DANRE Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 12/168 (7%)

Query: 17  PPTTSAYLDPHYWDE--RFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSE 74
           P T   +    YW+   R   E+ +EW  DY+    ++  +IKP   VL +GCGNS LSE
Sbjct: 5   PRTAEEFSSADYWERFFRKRGEKAFEWYGDYNSLCGVLHKYIKPRDKVLVVGCGNSELSE 64

Query: 75  GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 134
            LY+ G   +T ID+S   V  M +R   +   ++   + D     F +  F V ++K T
Sbjct: 65  QLYDVGYRQLTNIDISETVVSHMNQRNAER-RPDLSFQQLDATQTGFESGSFQVTLDKGT 123

Query: 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182
           ++ +            E       ML  V RVL   G ++ ++  Q H
Sbjct: 124 LDAM---------ASEEDGALAGRMLAEVGRVLAVGGRYVCITLAQEH 162

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
225428570	259	PREDICTED: endothelin-converting enzyme	0.980	0.980	0.739	1e-112
255556139	250	S-adenosylmethionine-dependent methyltra	0.961	0.996	0.742	1e-109
224080275	252	predicted protein [Populus trichocarpa]	0.957	0.984	0.741	1e-108
449438466	257	PREDICTED: methyltransferase-like protei	0.988	0.996	0.683	1e-105
42567385	248	S-adenosyl-L-methionine-dependent methyl	0.926	0.967	0.713	1e-103
297802538	248	hypothetical protein ARALYDRAFT_491230 [	0.926	0.967	0.709	1e-103
356538825	248	PREDICTED: endothelin-converting enzyme	0.934	0.975	0.649	5e-94
218185925	247	hypothetical protein OsI_36482 [Oryza sa	0.934	0.979	0.661	6e-94
115485899	247	Os11g0557700 [Oryza sativa Japonica Grou	0.934	0.979	0.661	2e-93
147770509	242	hypothetical protein VITISV_033053 [Viti	0.903	0.966	0.634	6e-88

>gi|225428570|ref|XP_002281086.1| PREDICTED: endothelin-converting enzyme 2 [Vitis vinifera] gi|297741411|emb|CBI32542.3| unnamed protein product [Vitis vinifera]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/257 (73%), Positives = 219/257 (85%), Gaps = 3/257 (1%)

Query: 2   DADQNPKASEKKTIGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSS 61
           D+   P  ++K++  P T SAYLDPHYWDERFSDEEHYEWLKDYSHF HL+QPH++PN S
Sbjct: 6   DSSPIPTETQKRSFAPSTVSAYLDPHYWDERFSDEEHYEWLKDYSHFSHLIQPHLQPNYS 65

Query: 62  VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 121
           VLE+GCGNS+LSE LY  GIT ITCIDLSA+AVEKMQ+RLL KGYKE+KVLEADMLDLPF
Sbjct: 66  VLEIGCGNSQLSEELYKGGITEITCIDLSAIAVEKMQKRLLSKGYKEIKVLEADMLDLPF 125

Query: 122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 181
           SN+CFDVVIEK TM+VLFV+SGDPWNP PETV K MA L+GVHRVLKPDG+FIS+SFGQP
Sbjct: 126 SNECFDVVIEKGTMDVLFVDSGDPWNPLPETVNKAMATLQGVHRVLKPDGVFISISFGQP 185

Query: 182 HFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFH 241
           HFRRP F AP FTWS EW TFGDGFHYFFY+L+KG+R+S     SQ  +   +P++S+F 
Sbjct: 186 HFRRPLFEAPDFTWSFEWSTFGDGFHYFFYLLKKGRRTSNGGGPSQRIE---MPSMSLFQ 242

Query: 242 EELEGEDYIFRTNIDEM 258
           +ELE EDYIFRTNIDEM
Sbjct: 243 DELESEDYIFRTNIDEM 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556139|ref|XP_002519104.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223541767|gb|EEF43315.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/252 (74%), Positives = 214/252 (84%), Gaps = 3/252 (1%)

Query: 4   DQNPKASEKKTIGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVL 63
           D + K++EK+ + P T  AYLDP+YW+ERFS EEHYEW KDYSHF+HL+Q HI PNSSVL
Sbjct: 2   DMSQKSTEKEEVAPSTVLAYLDPNYWNERFSKEEHYEWFKDYSHFQHLIQAHITPNSSVL 61

Query: 64  ELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN 123
           ELGCGNS+L E +Y DGIT ITCIDLSAVAVEKMQ+RL  KGY E+KVLEADMLDLPFS+
Sbjct: 62  ELGCGNSQLCEEMYKDGITDITCIDLSAVAVEKMQQRLSAKGYNEIKVLEADMLDLPFSD 121

Query: 124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 183
            CFDVVIEK TM+VLFVNSGDPWNP+P TV +V AML+ VHRVLKPDG+FIS+SFGQPHF
Sbjct: 122 KCFDVVIEKGTMDVLFVNSGDPWNPRPATVKQVKAMLDSVHRVLKPDGIFISISFGQPHF 181

Query: 184 RRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFHEE 243
           RRP F+AP++TWS+EW TFGDGFHYFFYILRKGKRS  D+E S    K  VP I +F EE
Sbjct: 182 RRPIFDAPEYTWSLEWKTFGDGFHYFFYILRKGKRSLNDKETS---GKVEVPPIYLFQEE 238

Query: 244 LEGEDYIFRTNI 255
           LEGED+IFRTNI
Sbjct: 239 LEGEDFIFRTNI 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080275|ref|XP_002306079.1| predicted protein [Populus trichocarpa] gi|222849043|gb|EEE86590.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/251 (74%), Positives = 214/251 (85%), Gaps = 3/251 (1%)

Query: 8   KASEKKTIGPPTTS-AYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELG 66
           + S K T  PP+T+ AY DPHYW+ERFS EEHYEW KDYSHFRHL+Q HI P SSVLELG
Sbjct: 2   EGSRKPTTEPPSTALAYQDPHYWNERFSKEEHYEWFKDYSHFRHLIQAHIPPTSSVLELG 61

Query: 67  CGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCF 126
           CGNS+L E +Y DGIT +TCIDLSAVAVEKMQ+RL  KGYKE+KVLEADMLDLPF+++CF
Sbjct: 62  CGNSQLCEEMYRDGITEVTCIDLSAVAVEKMQKRLEAKGYKEIKVLEADMLDLPFNDECF 121

Query: 127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRP 186
           DVVIEK TM+VLFVNSGDPWNP+PETV +V AMLEGVHRVLKPDG+FIS+SFGQPHFRRP
Sbjct: 122 DVVIEKGTMDVLFVNSGDPWNPRPETVAQVKAMLEGVHRVLKPDGIFISISFGQPHFRRP 181

Query: 187 FFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFHEELEG 246
            F+AP FTWSVEW TFGDGFHYFF +LRK  R S+ +E S   ++  +P+I +F EELEG
Sbjct: 182 LFDAPDFTWSVEWSTFGDGFHYFFNVLRKASRRSSSDEGSSGKNE--IPSICLFQEELEG 239

Query: 247 EDYIFRTNIDE 257
           ED+IFRTNIDE
Sbjct: 240 EDFIFRTNIDE 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438466|ref|XP_004137009.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 177/259 (68%), Positives = 212/259 (81%), Gaps = 3/259 (1%)

Query: 1   MDADQNPKASEKKTIGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNS 60
           M  DQNPK+++ + + P T  AYLDP YWDERFS EEHYEW KDYSHFRHL+ P +KP+S
Sbjct: 1   MGTDQNPKSAQNENVAPATALAYLDPKYWDERFSKEEHYEWFKDYSHFRHLILPLLKPDS 60

Query: 61  SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 120
           SVLELG GNS+LSE LYNDGIT ITCIDLSAVAVEKMQ RL LKG KE+KVLEADMLD+P
Sbjct: 61  SVLELGSGNSKLSEELYNDGITDITCIDLSAVAVEKMQRRLRLKGMKEIKVLEADMLDMP 120

Query: 121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 180
           F N+CFDVV+EK TM+VLFV+ GDPWNPQP T  KV A+LEGVHRVLK DG+F+S++FGQ
Sbjct: 121 FGNECFDVVVEKGTMDVLFVDGGDPWNPQPSTRAKVTAVLEGVHRVLKKDGIFVSITFGQ 180

Query: 181 PHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMF 240
           PHFRRP FNAP+FTWS E  TFGDGFHYF Y L KG+R  +D+   +  D+   P++ + 
Sbjct: 181 PHFRRPLFNAPEFTWSFECSTFGDGFHYFLYTLCKGRRLPSDKGEGERFDE---PSVCLL 237

Query: 241 HEELEGEDYIFRTNIDEMD 259
            +ELEGEDY+FRT++DE++
Sbjct: 238 QDELEGEDYMFRTDVDELN 256

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567385|ref|NP_195162.2| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|48310184|gb|AAT41770.1| At4g34360 [Arabidopsis thaliana] gi|50198934|gb|AAT70470.1| At4g34360 [Arabidopsis thaliana] gi|332660963|gb|AEE86363.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/244 (71%), Positives = 211/244 (86%), Gaps = 4/244 (1%)

Query: 14  TIGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLS 73
           ++GPP+   YLDPHYWDERFS EEHYEW KDYSHF+HL+  +IKP+SSVLELGCGNS+L 
Sbjct: 6   SVGPPSALTYLDPHYWDERFSSEEHYEWFKDYSHFQHLIISNIKPSSSVLELGCGNSQLC 65

Query: 74  EGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133
           E LY DGI  ITCIDLS+VAVEKMQ RLL KGYKE+KV++ADMLDLPF ++ FDVVIEK 
Sbjct: 66  EELYKDGIVDITCIDLSSVAVEKMQSRLLPKGYKEIKVVQADMLDLPFDSESFDVVIEKG 125

Query: 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQF 193
           TM+VLFV++GDPWNP+PETV+KVMA L+GVHRVLKPDG+FIS++FGQPHFRRP F  P+F
Sbjct: 126 TMDVLFVDAGDPWNPRPETVSKVMATLDGVHRVLKPDGIFISITFGQPHFRRPLFKDPKF 185

Query: 194 TWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRT 253
           TWS+E+ TFGDGFHYFFYILRKGKR + ++E  + +D    P+IS++ +ELEGEDY+FRT
Sbjct: 186 TWSMEYNTFGDGFHYFFYILRKGKRCNDEKEDEKCND----PSISLYQDELEGEDYLFRT 241

Query: 254 NIDE 257
            ID+
Sbjct: 242 RIDD 245

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802538|ref|XP_002869153.1| hypothetical protein ARALYDRAFT_491230 [Arabidopsis lyrata subsp. lyrata] gi|297314989|gb|EFH45412.1| hypothetical protein ARALYDRAFT_491230 [Arabidopsis lyrata subsp. lyrata]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 173/244 (70%), Positives = 210/244 (86%), Gaps = 4/244 (1%)

Query: 14  TIGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLS 73
           ++GPP+   YLDPHYWDERFS EEHYEW KDYSHF+HL++ +IK +SSVLELGCGNS+L 
Sbjct: 6   SVGPPSALTYLDPHYWDERFSSEEHYEWFKDYSHFQHLIKSNIKTSSSVLELGCGNSQLC 65

Query: 74  EGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133
           E LY DGI  ITCIDLS+VAVEKMQ RLL KGYKE+KV++A+MLDLPF ++ FDVVIEK 
Sbjct: 66  EELYKDGIVDITCIDLSSVAVEKMQSRLLSKGYKEIKVVQANMLDLPFDSESFDVVIEKG 125

Query: 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQF 193
           TM+VLFV++GDPWNP+PETV+KVMA L+GVHRVLKPDG+FIS++FGQPHFRRP F  P+F
Sbjct: 126 TMDVLFVDAGDPWNPRPETVSKVMATLDGVHRVLKPDGIFISITFGQPHFRRPLFKDPKF 185

Query: 194 TWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRT 253
           TWS+E+ TFGDGFHYFFYILRKGKRS+ + E  +  D    P+IS++ +ELEGEDY+FRT
Sbjct: 186 TWSMEYNTFGDGFHYFFYILRKGKRSNEENEDEKCSD----PSISLYQDELEGEDYLFRT 241

Query: 254 NIDE 257
            ID+
Sbjct: 242 RIDD 245

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538825|ref|XP_003537901.1| PREDICTED: endothelin-converting enzyme 2-like [Glycine max]

 Score =  349 bits (896), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 161/248 (64%), Positives = 199/248 (80%), Gaps = 6/248 (2%)

Query: 14  TIGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLS 73
           T  P T   YL+P YWDERFS EE YEW KDYSHFRHL+QPH+ P+S+VLELGCGNS++ 
Sbjct: 4   TPTPSTALTYLNPSYWDERFSKEEQYEWFKDYSHFRHLIQPHLTPHSAVLELGCGNSQMC 63

Query: 74  EGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133
           E L+ DG T ITCIDLS VAV+ MQ+RLL +G+K++KVL+ADML+LPF ++CFD+VIEK 
Sbjct: 64  EQLHKDGTTNITCIDLSPVAVQNMQKRLLSRGFKDIKVLQADMLELPFEDECFDLVIEKG 123

Query: 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQF 193
           TM+VLFV+SGDPWNP+PET+ KVMA L+GVHRVLK  G FISV+FGQPHFRRP FNAP F
Sbjct: 124 TMDVLFVDSGDPWNPKPETIFKVMATLKGVHRVLKAGGTFISVTFGQPHFRRPIFNAPDF 183

Query: 194 TWSVEWITFGDGFHYFFYILRKGKRSSADE--ELSQSHDKPLVPTISMFHEELEGEDYIF 251
            WSVEW TFG+ FHYF Y+L+KG+RSS D+   + +    P    I++ HEELE ED+ F
Sbjct: 184 NWSVEWTTFGETFHYFVYVLKKGQRSSYDDIPPVKRFEASP----INLLHEELESEDFAF 239

Query: 252 RTNIDEMD 259
           R N+DE++
Sbjct: 240 RINVDELN 247

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218185925|gb|EEC68352.1| hypothetical protein OsI_36482 [Oryza sativa Indica Group]

 Score =  349 bits (896), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 162/245 (66%), Positives = 198/245 (80%), Gaps = 3/245 (1%)

Query: 15  IGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSE 74
           + P T SAYLDP YWDERF  EEHYEW KD+SHFRHL+ P + P+ SVLE+GCGNSRL E
Sbjct: 5   VAPRTASAYLDPSYWDERFGKEEHYEWFKDFSHFRHLLAPLLSPSISVLEVGCGNSRLGE 64

Query: 75  GLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133
            L  +G+   ITC+DLS VAV++M++RL  +G + V+V+ ADMLDLPF  + FD+VIEK 
Sbjct: 65  ELLREGVAGGITCVDLSPVAVQRMRDRLAEQGTEGVEVVVADMLDLPFDRESFDLVIEKG 124

Query: 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQF 193
           TM+VLFV+SGDPWNP P TV  VM MLEG+H+VLKP+G+F+S++FGQPHFRR FF AP F
Sbjct: 125 TMDVLFVDSGDPWNPNPTTVDNVMKMLEGIHKVLKPEGIFVSITFGQPHFRRRFFEAPGF 184

Query: 194 TWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRT 253
           TWSVEW TFGDGFHYFFYIL+KGKR   D  ++Q H +P  P+I+MFHEELE EDYIFRT
Sbjct: 185 TWSVEWSTFGDGFHYFFYILKKGKR-LLDSNVNQ-HTQPAAPSINMFHEELESEDYIFRT 242

Query: 254 NIDEM 258
           N+DE+
Sbjct: 243 NVDEL 247

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115485899|ref|NP_001068093.1| Os11g0557700 [Oryza sativa Japonica Group] gi|77551490|gb|ABA94287.1| protease, putative, expressed [Oryza sativa Japonica Group] gi|113645315|dbj|BAF28456.1| Os11g0557700 [Oryza sativa Japonica Group] gi|215701208|dbj|BAG92632.1| unnamed protein product [Oryza sativa Japonica Group] gi|215741610|dbj|BAG98105.1| unnamed protein product [Oryza sativa Japonica Group] gi|222616146|gb|EEE52278.1| hypothetical protein OsJ_34257 [Oryza sativa Japonica Group]

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 162/245 (66%), Positives = 197/245 (80%), Gaps = 3/245 (1%)

Query: 15  IGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSE 74
           + P T SAYLDP YWDERF  EEHYEW KD+SHFRHL+ P + P+ SVLE+GCGNSRL E
Sbjct: 5   VAPRTASAYLDPSYWDERFGKEEHYEWFKDFSHFRHLLAPLLSPSISVLEVGCGNSRLGE 64

Query: 75  GLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133
            L  +G+   ITC+DLS VAV++M++RL  +G + V+V+ ADMLDLPF  + FD+VIEK 
Sbjct: 65  ELLREGVAGGITCVDLSPVAVQRMRDRLAEQGTEGVEVVVADMLDLPFDRESFDLVIEKG 124

Query: 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQF 193
           TM+VLFV+SGDPWNP P TV  VM MLEG+H+VLKP+G+F+S++FGQPHFRR FF AP F
Sbjct: 125 TMDVLFVDSGDPWNPNPTTVDNVMKMLEGIHKVLKPEGIFVSITFGQPHFRRRFFEAPGF 184

Query: 194 TWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRT 253
           TWSVEW TFGDGFHYFFYIL+KGKR   D   +Q H +P  P+I+MFHEELE EDYIFRT
Sbjct: 185 TWSVEWSTFGDGFHYFFYILKKGKR-LLDSNGNQ-HTQPAAPSINMFHEELESEDYIFRT 242

Query: 254 NIDEM 258
           N+DE+
Sbjct: 243 NVDEL 247

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770509|emb|CAN75678.1| hypothetical protein VITISV_033053 [Vitis vinifera]

 Score =  329 bits (844), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 165/260 (63%), Positives = 196/260 (75%), Gaps = 26/260 (10%)

Query: 2   DADQNPKASEKKTIGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSS 61
           D+   P  ++K++  P T SAYLDPHYWDERFS EEHYEWLKDYSHF HL+QPH++PN S
Sbjct: 6   DSSPIPTETQKRSFAPSTVSAYLDPHYWDERFSXEEHYEWLKDYSHFSHLIQPHLQPNYS 65

Query: 62  VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 121
           VLE+GCGNS+LSE LY  GIT ITCIDLSA+AVEKMQ+RLL KGYKE+KVLEADMLDLPF
Sbjct: 66  VLEIGCGNSQLSEELYKGGITEITCIDLSAIAVEKMQKRLLSKGYKEIKVLEADMLDLPF 125

Query: 122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 181
           SN+CFDVVIEK TM+VLFV+SGDPWNP PETV K MA L+GVHRVLKPDG+FIS+SFGQ 
Sbjct: 126 SNECFDVVIEKGTMDVLFVDSGDPWNPLPETVNKAMATLQGVHRVLKPDGVFISISFGQV 185

Query: 182 HFRRP---FFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTIS 238
               P   FF        ++ ++F             G+R+S     SQ  +   +P++S
Sbjct: 186 KHTNPSKVFF--------MKLVSF------------HGRRTSNGGGPSQRIE---MPSMS 222

Query: 239 MFHEELEGEDYIFRTNIDEM 258
           +F +ELE EDYIFRTNIDEM
Sbjct: 223 LFQDELESEDYIFRTNIDEM 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2116174	248	AT4G34360 "AT4G34360" [Arabido	0.926	0.967	0.713	2.8e-98
ZFIN|ZDB-GENE-070912-214	260	si:ch211-224b1.4 "si:ch211-224	0.895	0.892	0.368	6.6e-42
UNIPROTKB|G3N1Q4	255	ECE2 "Endothelin-converting en	0.884	0.898	0.363	1.9e-37
UNIPROTKB|F1PUB6	255	ECE2 "Uncharacterized protein"	0.926	0.941	0.359	8e-37
UNIPROTKB|D4ADU7	255	LOC100363561 "Protein LOC10036	0.915	0.929	0.354	1e-36
WB|WBGene00044236	217	C17E4.11 [Caenorhabditis elega	0.783	0.935	0.386	6.5e-35
TAIR|locus:2101861	252	AT3G60910 "AT3G60910" [Arabido	0.714	0.734	0.303	6.1e-23
UNIPROTKB|I3LQT3	883	ECE2 "Uncharacterized protein"	0.590	0.173	0.365	1.6e-21
UNIPROTKB|E2RIN6	883	ECE2 "Uncharacterized protein"	0.590	0.173	0.365	4.2e-21
UNIPROTKB|O60344	883	ECE2 "Endothelin-converting en	0.559	0.164	0.36	2.4e-20

TAIR|locus:2116174 AT4G34360 "AT4G34360" [Arabidopsis thaliana (taxid:3702)]

 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 174/244 (71%), Positives = 211/244 (86%)

Query:    14 TIGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLS 73
             ++GPP+   YLDPHYWDERFS EEHYEW KDYSHF+HL+  +IKP+SSVLELGCGNS+L 
Sbjct:     6 SVGPPSALTYLDPHYWDERFSSEEHYEWFKDYSHFQHLIISNIKPSSSVLELGCGNSQLC 65

Query:    74 EGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133
             E LY DGI  ITCIDLS+VAVEKMQ RLL KGYKE+KV++ADMLDLPF ++ FDVVIEK 
Sbjct:    66 EELYKDGIVDITCIDLSSVAVEKMQSRLLPKGYKEIKVVQADMLDLPFDSESFDVVIEKG 125

Query:   134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQF 193
             TM+VLFV++GDPWNP+PETV+KVMA L+GVHRVLKPDG+FIS++FGQPHFRRP F  P+F
Sbjct:   126 TMDVLFVDAGDPWNPRPETVSKVMATLDGVHRVLKPDGIFISITFGQPHFRRPLFKDPKF 185

Query:   194 TWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRT 253
             TWS+E+ TFGDGFHYFFYILRKGKR + ++E  + +D    P+IS++ +ELEGEDY+FRT
Sbjct:   186 TWSMEYNTFGDGFHYFFYILRKGKRCNDEKEDEKCND----PSISLYQDELEGEDYLFRT 241

Query:   254 NIDE 257
              ID+
Sbjct:   242 RIDD 245

GO:0003824 "catalytic activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-070912-214 si:ch211-224b1.4 "si:ch211-224b1.4" [Danio rerio (taxid:7955)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 87/236 (36%), Positives = 134/236 (56%)

Query:    17 PPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGL 76
             P + + Y D  YW+ER+  EE +EW  D++ F HL++ H+    ++L LGCGNS LS  +
Sbjct:    22 PDSNARYKDVDYWNERYRTEESFEWFGDFTKFEHLLKQHVGTEENILMLGCGNSALSYDM 81

Query:    77 YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 136
                G ++IT +D S+V VE M ER   K   ++  L  D   L F +  FDVV+EK T++
Sbjct:    82 CQAGYSSITNVDYSSVCVESMAERH--KDCAQLNWLCMDARRLAFPDGVFDVVLEKGTLD 139

Query:   137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWS 196
              + V   DPW         +  +L  V RVLKP G FISV+F QPHFR+  +   ++ WS
Sbjct:   140 AMLVEETDPWKISENAARLLHQVLLEVSRVLKPGGRFISVTFAQPHFRKRLYAQAEYDWS 199

Query:   197 VEWITFGDGFHYFFYILRKGKRSSADEELSQSH--DKPLVPTISMFHEELEGEDYI 250
             ++   +G  FHYF Y+L KG++ S ++   +    ++   P I +  +E + ED++
Sbjct:   200 IKHYHYGSNFHYFLYVLTKGEKLSTEDAALERRLVEEAEAPPIYVRFQEADSEDFL 255

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|G3N1Q4 ECE2 "Endothelin-converting enzyme 2 region" [Bos taurus (taxid:9913)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 88/242 (36%), Positives = 129/242 (53%)

Query:    17 PPTTSAYLDPHYWDERF---SDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLS 73
             P     Y +  YWD+R+   +D   YEW  D+S FR L++P ++P   +L LGCGNS LS
Sbjct:    14 PEKNCGYREVQYWDQRYQGAADSAPYEWFGDFSCFRDLLEPELRPLDRILVLGCGNSALS 73

Query:    74 EGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD---LPFSNDCFDVVI 130
               ++  G   +T +D S+V V  M+ R     Y  V  L  + +D   L F +  FDVV+
Sbjct:    74 YEIFLGGFPDVTSVDYSSVVVAAMRAR-----YAHVPTLRWETMDVRALGFPSGSFDVVL 128

Query:   131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNA 190
             EK T++ L     DPW    E V  V  +L  V RVL P G FIS++   PHFR   +  
Sbjct:   129 EKGTLDALLTGEQDPWTVSSEGVHTVDQVLNEVSRVLVPAGRFISLTSAAPHFRTRHYAQ 188

Query:   191 PQFTWSVEWITFGDGFHYFFYILRKGKRSSADEEL--SQSHDKPLVPTISMFHEELEGED 248
               + WS+   T+G+GF + FY+++KGK  S  +    +Q    P  PT S F ++ + ED
Sbjct:   189 AHYGWSLRHATYGNGFQFHFYLMQKGKELSVAQLAVGAQILSPPRPPTPSCFLQDSDHED 248

Query:   249 YI 250
             ++
Sbjct:   249 FL 250

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1PUB6 ECE2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 91/253 (35%), Positives = 132/253 (52%)

Query:     6 NPKASEKKTIGPPTTSAYLDPHYWDERF---SDEEHYEWLKDYSHFRHLVQPHIKPNSSV 62
             +P+A       P     Y +  YWD R+   +D   YEW  D+S FR L++P ++P   +
Sbjct:     3 SPRAPAPAREIPEQNCWYREVQYWDRRYRNAADSAPYEWFGDFSSFRALLEPELQPEDRI 62

Query:    63 LELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD---L 119
             L LGCGNS LS  L+  G   +T +D S+V V  MQ R     Y  V  L  + +D   L
Sbjct:    63 LVLGCGNSALSYELFLGGFPDVTSVDYSSVVVAAMQAR-----YAHVPTLRWETMDVRAL 117

Query:   120 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 179
              F +  FDVV+EK T++ L     DPWN   E V  +  +L  V RVL   G FIS++  
Sbjct:   118 DFPSGSFDVVLEKGTLDALLAGEQDPWNVSSEGVHTMDQVLSEVSRVLVHGGRFISLTSA 177

Query:   180 QPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSS-ADEEL-SQSHDKPLVPTI 237
              PHFR   +   ++ WS+   T+G GFH+  YI++KGK  + A   L ++    P  PT 
Sbjct:   178 APHFRIRHYAQARYGWSLRHATYGSGFHFHLYIMQKGKELTVAQLALGTKILSPPRPPTS 237

Query:   238 SMFHEELEGEDYI 250
               F ++ + ED++
Sbjct:   238 PCFLQDSDHEDFL 250

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|D4ADU7 LOC100363561 "Protein LOC100363561" [Rattus norvegicus (taxid:10116)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 90/254 (35%), Positives = 128/254 (50%)

Query:     9 ASEKKTIGPPTTSA----YLDPHYWDERFSDEEH---YEWLKDYSHFRHLVQPHIKPNSS 61
             AS +  + PP        Y    YWD+R+ D      YEW  D++ FR L++P + P   
Sbjct:     2 ASPRTPVSPPELPERNLQYRQVQYWDQRYKDAADSGPYEWFGDFASFRALLEPELCPEDR 61

Query:    62 VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--- 118
             +L LGCGNS LS  L+  G   +T +D S V V  MQ R     Y  V  L  + +D   
Sbjct:    62 ILVLGCGNSALSYELFLGGFPNVTSVDYSPVVVAAMQVR-----YAHVPSLRWETMDIRA 116

Query:   119 LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178
             L F +  FDVV+EK T++ L     DPWN   E V  V  +L  V RVL P G FIS++ 
Sbjct:   117 LDFPSGSFDVVLEKGTLDALLAGEPDPWNVSSEGVHTVDQVLSEVSRVLVPGGRFISMTP 176

Query:   179 GQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEEL--SQSHDKPLVPT 236
               PHFR   +  P + WS+   T+  GFH+ FY++ KG+  +  +    +Q    P  P 
Sbjct:   177 AGPHFRIRHYAQPCYDWSLRHTTYSSGFHFHFYVMHKGRELTVSQLALGAQILSPPSPPA 236

Query:   237 ISMFHEELEGEDYI 250
                F ++ + ED++
Sbjct:   237 PPCFLQDSDNEDFL 250

GO:0008168 "methyltransferase activity" evidence=IEA

WB|WBGene00044236 C17E4.11 [Caenorhabditis elegans (taxid:6239)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 82/212 (38%), Positives = 119/212 (56%)

Query:    19 TTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYN 78
             + S Y    YWDERF  E+++EWL   + F+H++ P    +S +  +GCG+S++S  L+ 
Sbjct:     3 SNSQYARMDYWDERFQTEKNFEWLSGLNAFQHIITPLFSKDSRIAHIGCGSSQVSMQLWE 62

Query:    79 DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-PFSNDCFDVVIEKATMEV 137
              G   IT ID S V +E    RL    Y  ++ +  D+  L    +  FDVV EKAT+E 
Sbjct:    63 LGYRNITNIDYSQVLIEN--GRL---EYPNMEWISDDITTLINCESSSFDVVFEKATIEA 117

Query:   138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSV 197
             + V     W P    +  +  +   + RVLKP+G+FISVSF QPHFR P     +  WSV
Sbjct:   118 ILVTEKSAWEPSDSALHNLENIFSSICRVLKPNGIFISVSFTQPHFRIPALLREK-NWSV 176

Query:   198 EWITFGDGFHYFFYILRKGKRSSADEELSQSH 229
             E   FGD FHY+ Y+ RKG  +S ++EL+  +
Sbjct:   177 EMFEFGDTFHYYVYVCRKG--NSLNKELADRY 206

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

TAIR|locus:2101861 AT3G60910 "AT3G60910" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 60/198 (30%), Positives = 100/198 (50%)

Query:    12 KKTIGPPTTSAYLDPHYWDERF-SDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNS 70
             ++ +    T  Y D  YWD R+  D   ++W + YS  R  V+  +  +S VL +GCGNS
Sbjct:     2 QRDVSSCNTYNYGDALYWDARYVQDALSFDWYQCYSSLRPFVRSFVSTSSRVLMVGCGNS 61

Query:    71 RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVV 129
              +SE +  DG   I  +D+S+VA+E MQ +       ++K ++ D+ D+  F +D FD +
Sbjct:    62 LMSEDMVKDGYEDIMNVDISSVAIEMMQTKYA--SVPQLKYMQMDVRDMSYFEDDSFDTI 119

Query:   130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFN 189
             I+K T++ L   S        + +     ML  V R++KP G +  +++G P  R P   
Sbjct:   120 IDKGTLDSLMCGS--------DALLSASRMLGEVSRLIKPGGTYFLITYGDPKVRMPHLT 171

Query:   190 APQFTWSVE-WITFGDGF 206
                + W +  +I    GF
Sbjct:   172 RSAYNWKISLYIIPRPGF 189

GO:0003824 "catalytic activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|I3LQT3 ECE2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 263 (97.6 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 60/164 (36%), Positives = 87/164 (53%)

Query:     6 NPKASEKKTIGPPTTSAYLDPHYWDERF---SDEEHYEWLKDYSHFRHLVQPHIKPNSSV 62
             +P+AS      P   S Y +  YWD+R+   +D   YEW  D+S FR L++P ++P   +
Sbjct:     3 SPRASTPLPELPEKNSGYREVQYWDQRYQGAADSAPYEWFGDFSSFRDLLEPELRPEDRI 62

Query:    63 LELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD---L 119
             L LGCGNS LS  L+  G   +T +D S+V V+ M+ R     Y  V  L  + +D   L
Sbjct:    63 LVLGCGNSALSYELFLGGFPDVTSVDYSSVVVDAMRAR-----YAHVPKLRWETMDVRAL 117

Query:   120 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGV 163
              F ++ F+VV+EK T++ L     DPW    E V  V  +L  V
Sbjct:   118 GFPSESFNVVLEKGTLDALLTGEQDPWIVSSEGVHTVDQVLSEV 161

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0016486 "peptide hormone processing" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|E2RIN6 ECE2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 259 (96.2 bits), Expect = 4.2e-21, P = 4.2e-21
 Identities = 60/164 (36%), Positives = 83/164 (50%)

Query:     6 NPKASEKKTIGPPTTSAYLDPHYWDERF---SDEEHYEWLKDYSHFRHLVQPHIKPNSSV 62
             +P+A       P     Y +  YWD R+   +D   YEW  D+S FR L++P ++P   +
Sbjct:     3 SPRAPAPAREIPEQNCWYREVQYWDRRYRNAADSAPYEWFGDFSSFRALLEPELQPEDRI 62

Query:    63 LELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD---L 119
             L LGCGNS LS  L+  G   +T +D S+V V  MQ R     Y  V  L  + +D   L
Sbjct:    63 LVLGCGNSALSYELFLGGFPDVTSVDYSSVVVAAMQAR-----YAHVPTLRWETMDVRAL 117

Query:   120 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGV 163
              F +  FDVV+EK T++ L     DPWN   E V  +  +L  V
Sbjct:   118 DFPSGSFDVVLEKGTLDALLAGEQDPWNVSSEGVHTMDQVLSEV 161

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

UNIPROTKB|O60344 ECE2 "Endothelin-converting enzyme 2" [Homo sapiens (taxid:9606)]

 Score = 252 (93.8 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 54/150 (36%), Positives = 78/150 (52%)

Query:    17 PPTTSAYLDPHYWDERF---SDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLS 73
             P     Y +  YWD+R+   +D   Y+W  D+S FR L++P ++P   +L LGCGNS LS
Sbjct:    14 PERNCGYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALS 73

Query:    74 EGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133
               L+  G   +T +D S+V V  MQ R         + ++   LD P ++  FDVV+EK 
Sbjct:    74 YELFLGGFPNVTSVDYSSVVVAAMQARHAHVPQLRWETMDVRKLDFPSAS--FDVVLEKG 131

Query:   134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGV 163
             T++ L     DPW    E V  V  +L  V
Sbjct:   132 TLDALLAGERDPWTVSSEGVHTVDQVLSEV 161

GO:0006508 "proteolysis" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IDA

GO:0016486 "peptide hormone processing" evidence=IDA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IDA

GO:0007420 "brain development" evidence=ISS

GO:0010002 "cardioblast differentiation" evidence=ISS

GO:0007507 "heart development" evidence=ISS

GO:0007267 "cell-cell signaling" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	3e-17
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	5e-15
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	3e-14
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	4e-12
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	7e-12
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	2e-11
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	5e-08
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	6e-07
COG2230	283	COG2230, Cfa, Cyclopropane fatty acid synthase and	5e-06
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	6e-06
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	8e-06
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	3e-05
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	5e-05
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	7e-05
PRK11088	272	PRK11088, rrmA, 23S rRNA methyltransferase A; Prov	9e-05
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	1e-04
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	2e-04
PLN02233	261	PLN02233, PLN02233, ubiquinone biosynthesis methyl	4e-04
TIGR02081	194	TIGR02081, metW, methionine biosynthesis protein M	6e-04
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	8e-04
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	0.001
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	0.002
TIGR04074	462	TIGR04074, bacter_Hen1, 3' terminal RNA ribose 2'-	0.003

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 76.3 bits (188), Expect = 3e-17
 Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 20/128 (15%)

Query: 56  IKPNSSVLELGCGNSRLSEGLYN-DGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLE 113
           +K    VL+LGCG   L+  L    G  A +  ID+S  A+EK +E     GY+ V+ ++
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ 60

Query: 114 ADMLDLP---FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD 170
            D+ +LP     ++ FDVVI    +     +  DP             +LE + RVLKP 
Sbjct: 61  GDIEELPQLQLEDNSFDVVISNEVLN----HLPDP-----------DKVLEEIIRVLKPG 105

Query: 171 GLFISVSF 178
           G+ I    
Sbjct: 106 GVLIVSDP 113

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 68.5 bits (168), Expect = 5e-15
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 21/112 (18%)

Query: 63  LELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS 122
           L++GCG   L+E L   G   +T +DLS   +   ++R         K +  D  DLPF 
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR------APRKFVVGDAEDLPFP 54

Query: 123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174
           ++ FDVV+   +  VL              +      L  + RVLKP G  +
Sbjct: 55  DESFDVVV---SSLVL------------HHLPDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 66.7 bits (163), Expect = 3e-14
 Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 15/114 (13%)

Query: 62  VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 121
           VL+LGCG   L+  L +     +T +D+S VA+E  ++         V+VL+ D  +LP 
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61

Query: 122 SND-CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174
             D  FDV+I           S  P +   E    +   LE   R+LKP G+ +
Sbjct: 62  EADESFDVII-----------SDPPLHHLVED---LARFLEEARRLLKPGGVLV 101

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 60.8 bits (148), Expect = 4e-12
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 19/118 (16%)

Query: 58  PNSSVLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM 116
           P + VL++GCG   L+  L      A +T +DLS   +E  +E   L     +  ++ D 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60

Query: 117 LDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174
            D     + FD V        L                    +L+ +  +LKP G  +
Sbjct: 61  PDALDLLEGFDAVFIGGGGGDLL------------------ELLDALASLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 60.1 bits (146), Expect = 7e-12
 Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 13/110 (11%)

Query: 62  VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 121
           +L+LGCG  R+   L   G +++T +D+S  A+E  +ERL  KG K V+ + AD  DLPF
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK-VRFVVADARDLPF 59

Query: 122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 171
               FD+VI           S D  +P+     ++ A+L    R+L+P G
Sbjct: 60  EEGSFDLVI-------CAGLSLDYLSPK-----QLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 39/194 (20%)

Query: 49  RHLVQ-PHIKPNSSVLELGCGNSRLSEGLYN-DGITAITCIDLS----AVAVEKMQERLL 102
           R L+    IKP   VL++ CG   ++  L    G   +  +D+S     VA EK+++   
Sbjct: 41  RALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKK--- 97

Query: 103 LKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEG 162
            KG + V+ +  D  +LPF ++ FD V    T+     N           VT +   L+ 
Sbjct: 98  -KGVQNVEFVVGDAENLPFPDNSFDAV----TISFGLRN-----------VTDIDKALKE 141

Query: 163 VHRVLKPDGLFISVSFGQPH-------FRRPFFNA--PQFTWSVEWITFGDGFHYFFYIL 213
           ++RVLKP G  + + F +P        +   +F    P      + +   D   Y  Y+ 
Sbjct: 142 MYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLI---GKLVA-KDAEAY-EYLA 196

Query: 214 RKGKRSSADEELSQ 227
              +R    EEL Q
Sbjct: 197 ESIRRFPDQEELKQ 210

Length = 238

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 19/114 (16%)

Query: 63  LELGCGNSRLSEGL--YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 120
           L++GCG   L   L     G+   T +D+S  A+E   ERL   G  +   +  D+LD  
Sbjct: 1   LDIGCGTGTLLRALLEALPGLE-YTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAI 59

Query: 121 FSNDC-FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF 173
             +   FDVV+    +  L     DP            A+L  + R+LKP G+ 
Sbjct: 60  DLDPGSFDVVVASNVLHHLA----DPR-----------AVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 20/137 (14%)

Query: 49  RHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYK 107
             L +  I   +SVL++GCG   L+  L      A     D+SA     M  +   K  +
Sbjct: 25  ALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDISAG----MLAQAKTKLSE 80

Query: 108 EVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVL 167
            V+ +  D   LP  +  FD+++    ++         W             L  + RVL
Sbjct: 81  NVQFICGDAEKLPLEDSSFDLIVSNLALQ---------WCDDLSQA------LSELARVL 125

Query: 168 KPDGLFISVSFGQPHFR 184
           KP GL    +FG     
Sbjct: 126 KPGGLLAFSTFGPGTLH 142

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 32/158 (20%), Positives = 62/158 (39%), Gaps = 32/158 (20%)

Query: 55  HIKPNSSVLELGCG---NSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VK 110
            +KP  ++L++GCG    +  +   Y   +  +T   LS   +   ++R+  +G ++ V+
Sbjct: 69  GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVT---LSEEQLAYAEKRIAARGLEDNVE 125

Query: 111 VLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLK 168
           V   D  D     + FD ++   ++ +             E V K       + V+ +LK
Sbjct: 126 VRLQDYRDF---EEPFDRIV---SVGMF------------EHVGKENYDDFFKKVYALLK 167

Query: 169 PDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGF 206
           P G  +  S   P      F      +  ++I F  G 
Sbjct: 168 PGGRMLLHSITGPDQEFRRFPD----FIDKYI-FPGGE 200

Length = 283

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 55  HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVL 112
             K    VLE+G G+  ++     +G   +  +D++  AVE  +    L   +   V+V+
Sbjct: 20  VDKKGDRVLEVGTGSGIVAIVAAKNGKK-VVGVDINPYAVECAKCNAKLNNIRNNGVEVI 78

Query: 113 EADMLDLPFSNDCFDVVI 130
            +D+ + PF  D FDV++
Sbjct: 79  RSDLFE-PFRGDKFDVIL 95

Length = 188

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 23/144 (15%)

Query: 57  KPNSSVLELGCGNS----RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVL 112
           K  +  L++  G       LS+   + G   +  +D++   +++ +++   +G   ++ L
Sbjct: 46  KRGNKFLDVAGGTGDWTFGLSDSAGSSG--KVVGLDINENMLKEGEKKAKEEGKYNIEFL 103

Query: 113 EADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL 172
           + +  +LPF +D FD+V    T+     N               + +L+   RVLKP G 
Sbjct: 104 QGNAEELPFEDDSFDIV----TISFGLRN-----------FPDYLKVLKEAFRVLKPGGR 148

Query: 173 FISVSFGQPHFRRPFFNAPQFTWS 196
            + + F +P    P  +     + 
Sbjct: 149 VVCLEFSKPEN--PLLSQAYELYF 170

Length = 233

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 44.1 bits (101), Expect = 3e-05
 Identities = 35/171 (20%), Positives = 56/171 (32%), Gaps = 23/171 (13%)

Query: 27  HYWDERFSDEEHYEWLKDYSHFRHLVQPHIKP---NSSVLELGCGNSRLSEGLYNDGITA 83
             +D      + +  L +      LV   ++       VL++GCG  RL+      G  A
Sbjct: 14  ELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLALLARLGGRGA 73

Query: 84  -ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF---SNDCFDVVIEKATMEVLF 139
            +  +DLS   +   + R    G   V  + AD L        +  FD+VI    + +L 
Sbjct: 74  YVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLL- 132

Query: 140 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNA 190
                               L  + RVLKP G  +     +         A
Sbjct: 133 ---------------PPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLAA 168

Length = 257

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 27/132 (20%)

Query: 56  IKPNSSVLELGCGNSRLSEGLYNDGITA--ITCIDLS----AVAVEKMQERLLLKGYKEV 109
           +     VL++ CG   L+  L         +T +D S     VA +K       +    +
Sbjct: 37  VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKK------SELPLNI 90

Query: 110 KVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP 169
           + ++AD   LPF ++ FD V    T+     N  D          K    L  ++RVLKP
Sbjct: 91  EFIQADAEALPFEDNSFDAV----TIAFGLRNVTDI--------QKA---LREMYRVLKP 135

Query: 170 DGLFISVSFGQP 181
            G  + + F +P
Sbjct: 136 GGRLVILEFSKP 147

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 25/126 (19%)

Query: 57  KPNSSVLELGCGNSRLSE--GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA 114
                VL+LGCG   L       +  +  +T +D++A A+E  +  L   G +  +V  +
Sbjct: 30  PLGGKVLDLGCGYGVLGAALAKRSPDLE-VTMVDINARALESARANLAANGLENGEVFWS 88

Query: 115 DMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNP-----QPETVTKVMAMLEGVHRVLKP 169
           D+         FD++I                NP     +          + G  R LKP
Sbjct: 89  DLYS-AVEPGKFDLII---------------SNPPFHAGKATDYDVAQRFIAGAARHLKP 132

Query: 170 DG-LFI 174
            G L+I
Sbjct: 133 GGELWI 138

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 42/160 (26%)

Query: 32  RFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCG----NSRLSEGLYNDGITAITCI 87
            F D  HY+ L+D +    L +   +  +++L++GCG       L++ L       +  +
Sbjct: 60  AFLDAGHYQPLRD-AVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGL 118

Query: 88  DLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIE-----KATMEVLFVNS 142
           D+S VA+     +   K Y +V    A    LPF++   D +I      KA         
Sbjct: 119 DISKVAI-----KYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAPCKA--------- 164

Query: 143 GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182
                             E + RV+KP G+ I+V+ G  H
Sbjct: 165 ------------------EELARVVKPGGIVITVTPGPRH 186

Length = 272

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 24/131 (18%)

Query: 57  KPNSSVLELGCGNSRLSEGLYNDG--ITAITCIDLS----AVAVEKMQERLLLKGYKEVK 110
           +P   VL+L CG   L+  L         +  +D S    AV  EK+++  L      V+
Sbjct: 50  RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL---SGNVE 106

Query: 111 VLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD 170
            ++ D   LPF ++ FD V    T+     N           V  +   L  ++RVLKP 
Sbjct: 107 FVQGDAEALPFPDNSFDAV----TIAFGLRN-----------VPDIDKALREMYRVLKPG 151

Query: 171 GLFISVSFGQP 181
           G  + + F +P
Sbjct: 152 GRLVILEFSKP 162

Length = 239

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 44/177 (24%), Positives = 67/177 (37%), Gaps = 34/177 (19%)

Query: 15  IGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFR--HLVQPH----IK---------PN 59
               +       +   ++F       W  +   F+  H + P     I+         P 
Sbjct: 2   TNTASDDTQNVDYKELDKFEALASRWWDPEGE-FKPLHKINPLRLDYIREVARLRFDLPG 60

Query: 60  SSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 119
             VL++GCG   LSE L   G + +T ID S   +E  +   L  G   +   +A + DL
Sbjct: 61  LRVLDVGCGGGILSEPLARLGAS-VTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDL 118

Query: 120 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG-LFIS 175
             +   FDVV     MEVL            E V    + L    +++KP G LF+S
Sbjct: 119 ASAGGQFDVVT---CMEVL------------EHVPDPESFLRACAKLVKPGGILFLS 160

Length = 243

>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 26/121 (21%)

Query: 57  KPNSSVLELGCGNSRL----SEGLYNDGITAITCIDLS----AVAVEKMQERLLLKGYKE 108
           K    VL+L CG+  L    SE + +DG   +  +D S    AVA  + QE      YK 
Sbjct: 72  KMGDRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASR-QELKAKSCYKN 128

Query: 109 VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLK 168
           ++ +E D  DLPF +  FD +    TM     N           V ++ AM E ++RVLK
Sbjct: 129 IEWIEGDATDLPFDDCYFDAI----TMGYGLRN----------VVDRLKAMQE-MYRVLK 173

Query: 169 P 169
           P
Sbjct: 174 P 174

Length = 261

>gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 56  IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD 115
           I P S VL+LGCG+  L   L ++         +    +E  Q+ +L    + V V++ D
Sbjct: 11  IPPGSRVLDLGCGDGELLALLRDE-------KQVRGYGIEIDQDGVLACVARGVNVIQGD 63

Query: 116 M-LDLP-FSNDCFDVVIEKATME 136
           +   L  F +  FD VI   T++
Sbjct: 64  LDEGLEAFPDKSFDYVILSQTLQ 86

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized [Amino acid biosynthesis, Aspartate family]. Length = 194

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 10/75 (13%)

Query: 59  NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVE---KMQERLLLKGYKEVKVLEAD 115
             +VL+LG G   L+ G    G + +  +D+   A+E      E LL     +V+ + AD
Sbjct: 46  GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLG----DVEFVVAD 101

Query: 116 MLDLPFSNDCFDVVI 130
           + D       FD VI
Sbjct: 102 VSDF---RGKFDTVI 113

Length = 198

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 37/166 (22%)

Query: 34  SDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNS----RLSEGLYNDGITAITCIDL 89
           S + H +W KD      + + +++  +S L++ CG +     L+E +  +G   +  +D 
Sbjct: 26  SFQRHKKWRKDT-----MKRMNVQAGTSALDVCCGTADWSIALAEAVGPEG--HVIGLDF 78

Query: 90  S----AVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDP 145
           S    +V  +K+++     G   V+++  + ++LPF ++ FD V    T+     N    
Sbjct: 79  SENMLSVGRQKVKDA----GLHNVELVHGNAMELPFDDNSFDYV----TIGFGLRN---- 126

Query: 146 WNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH---FRRPFF 188
                  V   M +L  ++RV+KP G  + +   QP    F++ +F
Sbjct: 127 -------VPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYF 165

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 22/121 (18%)

Query: 55  HIKPNSSVLELGCG---NSR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVK 110
            ++P   VL++GCG   ++R L+  +  +G   +  ID S   +   +ER    G   V+
Sbjct: 16  AVQPGDRVLDVGCGPGNDARELARRVGPEG--RVVGIDRSEAMLALAKERAAGLG-PNVE 72

Query: 111 VLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD 170
            +  D   LPF +  FD V     ++ L            E   + +A  E + RVL+P 
Sbjct: 73  FVRGDADGLPFPDGSFDAVRSDRVLQHL------------EDPARALA--E-IARVLRPG 117

Query: 171 G 171
           G
Sbjct: 118 G 118

Length = 241

>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose 2'-O-methyltransferase Hen1

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 61  SVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLL 103
           SVL+LGCG  +L   L  +     I  +D+SA  +E    RL L
Sbjct: 285 SVLDLGCGEGKLLRLLLAEKQFERIAGVDVSARELEIAARRLKL 328

Members of this protein family are bacterial Hen1, a 3' terminal RNA ribose 2'-O-methyltransferase that acts in bacterial RNA repair. All members of the seed alignment belong to a cassette with the RNA repair enzyme polynucleotide kinase-phosphatase (Pnkp). Chemically similar Hen1 in eukaryotes acts instead on small regulatory RNAs [Transcription, RNA processing, Protein synthesis, tRNA and rRNA base modification]. Length = 462

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.9
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.9
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.83
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.8
PRK11207	197	tellurite resistance protein TehB; Provisional	99.78
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.77
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.77
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.77
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.77
KOG1271	227	consensus Methyltransferases [General function pre	99.76
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.76
PLN02244	340	tocopherol O-methyltransferase	99.76
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.75
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.74
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.73
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.73
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.72
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.72
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.72
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.71
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.7
PRK12335	287	tellurite resistance protein TehB; Provisional	99.7
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.7
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.69
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.69
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.68
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.67
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.67
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.67
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.66
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.66
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.65
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.65
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.65
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.64
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.64
KOG2352	482	consensus Predicted spermine/spermidine synthase [	99.64
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.64
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.63
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.63
PLN02336	475	phosphoethanolamine N-methyltransferase	99.63
PRK05785	226	hypothetical protein; Provisional	99.63
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.62
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.62
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.62
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.61
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.61
KOG4300	252	consensus Predicted methyltransferase [General fun	99.6
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.6
PRK06922	677	hypothetical protein; Provisional	99.6
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.6
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.6
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.59
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.59
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.59
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.58
PLN02490	340	MPBQ/MSBQ methyltransferase	99.58
KOG2361	264	consensus Predicted methyltransferase [General fun	99.57
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.57
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.56
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.56
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.56
COG2890	280	HemK Methylase of polypeptide chain release factor	99.56
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.56
PRK08317	241	hypothetical protein; Provisional	99.56
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.55
PRK14967	223	putative methyltransferase; Provisional	99.55
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.55
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.55
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.55
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.55
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.54
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.54
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.54
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.54
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.54
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.54
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.54
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.53
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.53
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.53
PRK06202	232	hypothetical protein; Provisional	99.53
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.53
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.52
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.52
COG4123	248	Predicted O-methyltransferase [General function pr	99.51
TIGR03438	301	probable methyltransferase. This model represents	99.51
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.51
PLN03075	296	nicotianamine synthase; Provisional	99.51
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.51
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.5
PLN02336	475	phosphoethanolamine N-methyltransferase	99.49
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.49
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.49
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.49
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.48
PRK14968	188	putative methyltransferase; Provisional	99.48
PRK04266	226	fibrillarin; Provisional	99.47
PRK07402	196	precorrin-6B methylase; Provisional	99.47
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.47
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.47
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.46
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.46
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.45
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.45
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.45
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.45
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.44
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.44
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.43
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.43
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.43
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.43
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.42
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.42
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.41
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.41
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.4
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.39
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.39
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.36
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.36
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.36
TIGR00438	188	rrmJ cell division protein FtsJ.	99.34
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.34
PHA03411	279	putative methyltransferase; Provisional	99.34
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.32
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.3
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.3
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.29
KOG3010	261	consensus Methyltransferase [General function pred	99.29
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.29
PLN02672	1082	methionine S-methyltransferase	99.28
PTZ00146	293	fibrillarin; Provisional	99.28
PHA03412	241	putative methyltransferase; Provisional	99.28
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.28
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.26
PRK00811	283	spermidine synthase; Provisional	99.25
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.25
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.25
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.25
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.25
PRK04457	262	spermidine synthase; Provisional	99.24
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.21
COG4122	219	Predicted O-methyltransferase [General function pr	99.21
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.18
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.18
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.16
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.16
KOG2899	288	consensus Predicted methyltransferase [General fun	99.15
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.14
PLN02476	278	O-methyltransferase	99.14
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.14
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.14
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.14
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.14
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.12
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.12
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.11
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.11
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.1
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.1
KOG2904	328	consensus Predicted methyltransferase [General fun	99.1
PLN02366	308	spermidine synthase	99.1
PRK01581	374	speE spermidine synthase; Validated	99.1
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.07
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.05
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.04
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	99.04
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.04
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.03
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.01
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.01
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.0
PRK03612	521	spermidine synthase; Provisional	98.98
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.97
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.96
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.96
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.95
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.93
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.93
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.92
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.92
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.92
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.91
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.9
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.89
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.87
PLN02823	336	spermine synthase	98.87
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.87
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.85
COG2520	341	Predicted methyltransferase [General function pred	98.84
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.83
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.81
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.8
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.79
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.77
PRK04148	134	hypothetical protein; Provisional	98.77
COG2521	287	Predicted archaeal methyltransferase [General func	98.76
KOG1331	293	consensus Predicted methyltransferase [General fun	98.71
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.71
KOG2940	325	consensus Predicted methyltransferase [General fun	98.68
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.66
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.66
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.65
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.65
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.63
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.62
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.62
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.62
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.61
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.61
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.59
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.56
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.55
PRK00536	262	speE spermidine synthase; Provisional	98.53
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.52
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.51
COG3897	218	Predicted methyltransferase [General function pred	98.49
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.49
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.46
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.44
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.43
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.43
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.41
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.41
KOG2730	263	consensus Methylase [General function prediction o	98.39
COG4076	252	Predicted RNA methylase [General function predicti	98.38
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.36
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.33
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.3
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.29
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.28
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.26
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.26
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.14
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.14
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.12
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.11
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.08
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.04
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.02
KOG3115	249	consensus Methyltransferase-like protein [General	98.01
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.93
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.91
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.91
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.87
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.87
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.86
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.86
PRK10742	250	putative methyltransferase; Provisional	97.85
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.82
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.81
PF13679	141	Methyltransf_32: Methyltransferase domain	97.78
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.72
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.71
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.69
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.68
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.61
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.6
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.59
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.53
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	97.51
COG0286	489	HsdM Type I restriction-modification system methyl	97.48
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.46
COG4798	238	Predicted methyltransferase [General function pred	97.43
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	97.41
PHA01634	156	hypothetical protein	97.31
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.19
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.17
PRK11524	284	putative methyltransferase; Provisional	97.11
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.08
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.98
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.95
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.95
PRK13699	227	putative methylase; Provisional	96.88
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.87
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.82
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.81
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.78
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.71
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.69
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.65
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.5
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.45
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.42
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	96.39
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	96.24
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	96.21
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.19
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	96.17
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.01
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	96.0
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	95.98
PLN02668	386	indole-3-acetate carboxyl methyltransferase	95.94
PF03269	177	DUF268: Caenorhabditis protein of unknown function	95.91
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	95.89
COG1568	354	Predicted methyltransferases [General function pre	95.85
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.83
COG4301	321	Uncharacterized conserved protein [Function unknow	95.62
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.61
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.53
KOG1227	351	consensus Putative methyltransferase [General func	95.51
KOG2920	282	consensus Predicted methyltransferase [General fun	95.48
KOG2078	495	consensus tRNA modification enzyme [RNA processing	95.27
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	95.26
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.05
PTZ00357	1072	methyltransferase; Provisional	94.96
TIGR00497	501	hsdM type I restriction system adenine methylase (	94.94
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.68
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.65
PRK11524	284	putative methyltransferase; Provisional	94.48
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	94.34
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	94.32
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	94.28
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.25
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	94.1
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	94.08
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	93.87
KOG2352	482	consensus Predicted spermine/spermidine synthase [	93.75
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	93.66
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	93.57
PRK13699	227	putative methylase; Provisional	93.52
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.51
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	93.5
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	93.5
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	93.38
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	93.3
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.17
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	93.06
PLN02827	378	Alcohol dehydrogenase-like	92.94
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	92.91
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	92.81
COG1565	370	Uncharacterized conserved protein [Function unknow	92.66
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	92.44
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	92.26
PRK10458	467	DNA cytosine methylase; Provisional	92.23
PLN02740	381	Alcohol dehydrogenase-like	92.14
COG1255	129	Uncharacterized protein conserved in archaea [Func	92.13
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	92.02
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	91.84
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	91.83
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	91.73
PLN02586	360	probable cinnamyl alcohol dehydrogenase	91.46
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	91.39
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	91.28
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	91.17
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.15
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	91.02
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	90.99
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	90.92
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	90.76
COG0863	302	DNA modification methylase [DNA replication, recom	90.72
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	90.63
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.59
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.49
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	90.3
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	89.97
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	89.85
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	89.78
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.74
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	89.59
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.57
PRK10083	339	putative oxidoreductase; Provisional	89.57
KOG2912	419	consensus Predicted DNA methylase [Function unknow	89.37
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.32
PLN02514	357	cinnamyl-alcohol dehydrogenase	89.06
PRK07417	279	arogenate dehydrogenase; Reviewed	88.92
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.86
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	88.83
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	88.81
COG2933	358	Predicted SAM-dependent methyltransferase [General	88.81
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	88.76
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	88.65
KOG3924	419	consensus Putative protein methyltransferase invol	88.51
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	88.38
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.34
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	87.89
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	87.86
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	87.81
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	87.58
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	87.17
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	86.86
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	86.81
PLN02178	375	cinnamyl-alcohol dehydrogenase	86.75
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	86.72
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	86.72
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	86.64
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	86.59
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	86.54
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	86.49
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	86.47
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	86.42
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	86.38
PRK03562	621	glutathione-regulated potassium-efflux system prot	86.34
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	86.11
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	85.92
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	85.88
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	85.84
COG3315	297	O-Methyltransferase involved in polyketide biosynt	85.82
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	85.76
PRK07109	334	short chain dehydrogenase; Provisional	85.69
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	85.64
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	85.62
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	85.59
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	85.5
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	85.4
PRK11730	715	fadB multifunctional fatty acid oxidation complex	85.36
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	85.32
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	85.24
PRK03659	601	glutathione-regulated potassium-efflux system prot	84.99
KOG2360	413	consensus Proliferation-associated nucleolar prote	84.89
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	84.79
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	84.77
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	84.48
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	84.45
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	84.04
PRK08324	681	short chain dehydrogenase; Validated	83.8
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	83.61
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	83.6
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	83.6
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	83.6
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	83.58
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	83.53
PRK08265	261	short chain dehydrogenase; Provisional	83.52
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	83.45
PRK07576	264	short chain dehydrogenase; Provisional	83.37
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	83.11
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.07
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	82.97
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	82.82
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	82.66
PRK10669	558	putative cation:proton antiport protein; Provision	82.65
PRK06701	290	short chain dehydrogenase; Provisional	82.62
PRK09496	453	trkA potassium transporter peripheral membrane com	82.37
PLN02702	364	L-idonate 5-dehydrogenase	82.36
PLN02494	477	adenosylhomocysteinase	82.36
COG0569	225	TrkA K+ transport systems, NAD-binding component [	82.22
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	81.67
PRK08507	275	prephenate dehydrogenase; Validated	81.15
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	81.12
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	80.88
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	80.78
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	80.76
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	80.36
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	80.35

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.90  E-value=6.6e-25  Score=180.60  Aligned_cols=167  Identities=27%  Similarity=0.461  Sum_probs=135.9

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      +|.+|||+|||||..+..+++.... +|+++|+|+.|++.+++++...+..+++++++|+..+|+++++||+|.+...++
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr  130 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR  130 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence            7899999999999999999998545 999999999999999999998777679999999999999999999999988886


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEEEEE-EEEe
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFY-ILRK  215 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  215 (259)
                      .+               .+...+|+++.|+|||||++++.+++++..-  .+... +.            .|++. +++.
T Consensus       131 nv---------------~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~--~~~~~-~~------------~~~~~~v~P~  180 (238)
T COG2226         131 NV---------------TDIDKALKEMYRVLKPGGRLLVLEFSKPDNP--VLRKA-YI------------LYYFKYVLPL  180 (238)
T ss_pred             cC---------------CCHHHHHHHHHHhhcCCeEEEEEEcCCCCch--hhHHH-HH------------HHHHHhHhhh
Confidence            65               6889999999999999999999999886431  11111 11            11222 4444


Q ss_pred             -CCCCCchhhhhhccCCCCCCcccccccccccccccccccCCCC
Q 025039          216 -GKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEM  258 (259)
Q Consensus       216 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (259)
                       +....++.+ .|.   |+.++++.|.+..+...+++++||.++
T Consensus       181 ~g~~~~~~~~-~y~---yL~eSi~~~p~~~~l~~~~~~~gf~~i  220 (238)
T COG2226         181 IGKLVAKDAE-AYE---YLAESIRRFPDQEELKQMIEKAGFEEV  220 (238)
T ss_pred             hceeeecChH-HHH---HHHHHHHhCCCHHHHHHHHHhcCceEE
Confidence             333333444 443   499999999999999999999999865

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.90  E-value=6.2e-24  Score=176.27  Aligned_cols=169  Identities=25%  Similarity=0.463  Sum_probs=88.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      ..++.+|||+|||||.++..+++. ++. +|+++|+|+.|++.|++++...+..+++++++|+.++|+++++||+|++..
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f  124 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF  124 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence            457889999999999999999886 444 999999999999999999998877789999999999999999999999988


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEEEEEEE
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYIL  213 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (259)
                      .++.+               .+..+.++++.|+|||||++++++++.+..  +++.. .+.            .|...++
T Consensus       125 glrn~---------------~d~~~~l~E~~RVLkPGG~l~ile~~~p~~--~~~~~-~~~------------~y~~~il  174 (233)
T PF01209_consen  125 GLRNF---------------PDRERALREMYRVLKPGGRLVILEFSKPRN--PLLRA-LYK------------FYFKYIL  174 (233)
T ss_dssp             -GGG----------------SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS--HHHHH-HHH------------H------
T ss_pred             hHHhh---------------CCHHHHHHHHHHHcCCCeEEEEeeccCCCC--chhhc-eee------------eeecccc
Confidence            87655               567889999999999999999999887653  12221 111            2344456


Q ss_pred             EeCC-CCCchhhhhhccCCCCCCcccccccccccccccccccCCCC
Q 025039          214 RKGK-RSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEM  258 (259)
Q Consensus       214 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (259)
                      +... ....+.. .|   .|+.+++..|...-+..++++++||..+
T Consensus       175 P~~g~l~~~~~~-~Y---~yL~~Si~~f~~~~~~~~~l~~~Gf~~v  216 (233)
T PF01209_consen  175 PLIGRLLSGDRE-AY---RYLPESIRRFPSPEELKELLEEAGFKNV  216 (233)
T ss_dssp             ----------------------------------------------
T ss_pred             cccccccccccc-cc---cccccccccccccccccccccccccccc
Confidence            5433 3333333 34   5599999999999999999999999865

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.83  E-value=1e-20  Score=153.57  Aligned_cols=165  Identities=25%  Similarity=0.352  Sum_probs=132.4

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC-------CeEEEeeCCHHHHHHHHHHHhhcCCC---CeEEEEcccCCCcCCCCcee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI-------TAITCIDLSAVAVEKMQERLLLKGYK---EVKVLEADMLDLPFSNDCFD  127 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~-------~~v~~vD~s~~~~~~a~~~~~~~~~~---~v~~~~~d~~~~~~~~~~fD  127 (259)
                      .+.++||+|||||.++..+.+...       .+|+++|+|++|+.+++++..+.++.   .+.|+++|+.++|+++.+||
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D  179 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD  179 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence            568999999999999998887622       38999999999999999998766653   27899999999999999999


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc-cccccCCCCCCcEEEEEEeCCeE
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF-RRPFFNAPQFTWSVEWITFGDGF  206 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  206 (259)
                      .+.+...+.               +..++++.+++++|+|||||++++.+|+.... ....+..                
T Consensus       180 ~yTiafGIR---------------N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~----------------  228 (296)
T KOG1540|consen  180 AYTIAFGIR---------------NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYD----------------  228 (296)
T ss_pred             eEEEeccee---------------cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHH----------------
Confidence            999877764               44788999999999999999999999886431 1111111                


Q ss_pred             EEEEEEEEe-CCCCCchhhhhhccCCCCCCcccccccccccccccccccCCC
Q 025039          207 HYFFYILRK-GKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDE  257 (259)
Q Consensus       207 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (259)
                      .|++.+++. +..+.++.. +|+|   ++++|++|..+-+++.+|..+||.-
T Consensus       229 ~ysf~VlpvlG~~iagd~~-sYqY---LveSI~rfp~qe~f~~miedaGF~~  276 (296)
T KOG1540|consen  229 QYSFDVLPVLGEIIAGDRK-SYQY---LVESIRRFPPQEEFASMIEDAGFSS  276 (296)
T ss_pred             hhhhhhhchhhHhhhhhHh-hhhh---HHhhhhcCCCHHHHHHHHHHcCCcc
Confidence            345556654 555566665 5544   9999999999999999999999874

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.80  E-value=8e-19  Score=143.88  Aligned_cols=139  Identities=17%  Similarity=0.231  Sum_probs=106.7

Q ss_pred             cchhhhcCCCCccccc--ccchHHHHhhccc-CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh
Q 025039           27 HYWDERFSDEEHYEWL--KDYSHFRHLVQPH-IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL  103 (259)
Q Consensus        27 ~~w~~~~~~~~~~~w~--~~~~~~~~~l~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~  103 (259)
                      +||+++|++... .|.  ...+.+..++... ++++.+|||+|||.|..+.+|+++|. +|+|+|+|+.+++.+.+....
T Consensus         1 ~~Wd~ry~~~~~-~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~   78 (213)
T TIGR03840         1 EFWHERWQEGQI-GFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGL   78 (213)
T ss_pred             ChHHHHHhcCCC-CCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCC
Confidence            489999988654 443  3344555655542 25678999999999999999999999 899999999999986443211


Q ss_pred             c------------CCCCeEEEEcccCCCcCC-CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC
Q 025039          104 K------------GYKEVKVLEADMLDLPFS-NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD  170 (259)
Q Consensus       104 ~------------~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  170 (259)
                      .            .-.++++.++|+.+++.. .+.||.|+...+++++             +.+....+++.+.++|+||
T Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l-------------~~~~R~~~~~~l~~lLkpg  145 (213)
T TIGR03840        79 TPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIAL-------------PEEMRQRYAAHLLALLPPG  145 (213)
T ss_pred             CcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccC-------------CHHHHHHHHHHHHHHcCCC
Confidence            0            112588899999887632 3579999998888777             5577888999999999999


Q ss_pred             cEEEEEecCC
Q 025039          171 GLFISVSFGQ  180 (259)
Q Consensus       171 G~l~~~~~~~  180 (259)
                      |.++++++..
T Consensus       146 G~~ll~~~~~  155 (213)
T TIGR03840       146 ARQLLITLDY  155 (213)
T ss_pred             CeEEEEEEEc
Confidence            9988876643

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.78  E-value=3.4e-18  Score=138.92  Aligned_cols=130  Identities=20%  Similarity=0.416  Sum_probs=103.5

Q ss_pred             CccchhhhcCCCCcccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc
Q 025039           25 DPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK  104 (259)
Q Consensus        25 ~~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~  104 (259)
                      +..||.+.|...      +..+.+...+.  ..++.+|||+|||+|..+..+++.|. +|+++|+|+.+++.++++....
T Consensus         5 ~~~~~~~~~~~~------~~~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~   75 (197)
T PRK11207          5 DENYFTDKYGLT------RTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAE   75 (197)
T ss_pred             hHHHHHHhcCCC------CChHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHc
Confidence            355676666432      12334444443  23568999999999999999999987 9999999999999999998888


Q ss_pred             CCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          105 GYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       105 ~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ++.++++.+.|+.+.+++ ++||+|+++.+++++             +..+...+++++.++|+|||++++++
T Consensus        76 ~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~-------------~~~~~~~~l~~i~~~LkpgG~~~~~~  134 (197)
T PRK11207         76 NLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFL-------------EAKTIPGLIANMQRCTKPGGYNLIVA  134 (197)
T ss_pred             CCCcceEEecChhhCCcC-CCcCEEEEecchhhC-------------CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            877788889998876654 579999999888766             44678899999999999999976643

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.77  E-value=5.4e-18  Score=125.06  Aligned_cols=106  Identities=32%  Similarity=0.563  Sum_probs=87.2

Q ss_pred             CCCcEEEEcCCCCcchHHHHh--cCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEccc-CCCcCCCCceeEEEecc
Q 025039           58 PNSSVLELGCGNSRLSEGLYN--DGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADM-LDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~-~~~~~~~~~fD~V~~~~  133 (259)
                      |+.+|||+|||+|..+..+++  .+. +++++|+|+.+++.+++++...+. +++++.++|+ ..... .+.||+|++.+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~   78 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSG   78 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECC
Confidence            578999999999999999999  444 999999999999999999954443 4699999999 33332 35799999988


Q ss_pred             -eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          134 -TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       134 -~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                       ++++++            +.++..++++.+.+.|+|||++++.+
T Consensus        79 ~~~~~~~------------~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   79 FTLHFLL------------PLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GSGGGCC------------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Ccccccc------------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence             555331            33678899999999999999999875

...

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.77  E-value=7.3e-18  Score=138.66  Aligned_cols=140  Identities=19%  Similarity=0.248  Sum_probs=105.9

Q ss_pred             CccchhhhcCCCCccccccc-chHHHHhhcc-cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh
Q 025039           25 DPHYWDERFSDEEHYEWLKD-YSHFRHLVQP-HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL  102 (259)
Q Consensus        25 ~~~~w~~~~~~~~~~~w~~~-~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~  102 (259)
                      ++++|+++|+.....+|... .+.+...+.. .++++.+|||+|||.|..+.+|+++|. +|+|+|+|+.+++.+.+...
T Consensus         2 ~~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~   80 (218)
T PRK13255          2 DPDFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENG   80 (218)
T ss_pred             CHhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcC
Confidence            47899999988654333333 3445555432 335678999999999999999999999 89999999999998753211


Q ss_pred             hc------------CCCCeEEEEcccCCCcCC-CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccC
Q 025039          103 LK------------GYKEVKVLEADMLDLPFS-NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP  169 (259)
Q Consensus       103 ~~------------~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp  169 (259)
                      ..            ...++++.++|+.++... ...||+|+...+++++             +.+...++++.+.++|+|
T Consensus        81 l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l-------------~~~~R~~~~~~l~~lL~p  147 (218)
T PRK13255         81 LTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIAL-------------PEEMRERYVQQLAALLPA  147 (218)
T ss_pred             CCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhC-------------CHHHHHHHHHHHHHHcCC
Confidence            10            113588899999887532 2579999998888877             567889999999999999


Q ss_pred             CcEEEEEec
Q 025039          170 DGLFISVSF  178 (259)
Q Consensus       170 gG~l~~~~~  178 (259)
                      ||.++++++
T Consensus       148 gG~~~l~~~  156 (218)
T PRK13255        148 GCRGLLVTL  156 (218)
T ss_pred             CCeEEEEEE
Confidence            997666443

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.77  E-value=3.6e-18  Score=133.13  Aligned_cols=107  Identities=28%  Similarity=0.506  Sum_probs=93.6

Q ss_pred             CCCCcEEEEcCCCCcchHHHH-hcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEec
Q 025039           57 KPNSSVLELGCGNSRLSEGLY-NDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEK  132 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~-~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~  132 (259)
                      +++.+|||+|||+|..+..++ +.++. +++|+|+|+.+++.|+++++..+++++++.++|+.+++  ++ +.||+|++.
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~   80 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN   80 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence            357899999999999999999 44544 99999999999999999999999888999999999976  44 789999999


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .+++++               .+...+++++.++|++||.+++..+.
T Consensus        81 ~~l~~~---------------~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   81 GVLHHF---------------PDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             STGGGT---------------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             Cchhhc---------------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            888655               56779999999999999999988765

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.77  E-value=5.4e-18  Score=143.54  Aligned_cols=169  Identities=21%  Similarity=0.314  Sum_probs=122.2

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhh---cCCCCeEEEEcccCCCcCCCCceeEEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLL---KGYKEVKVLEADMLDLPFSNDCFDVVI  130 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~---~~~~~v~~~~~d~~~~~~~~~~fD~V~  130 (259)
                      +.++.+|||+|||+|..+..+++. ++. +|+|+|+|++|++.|+++...   ...++++++++|+.++++++++||+|+
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            457889999999999999988876 443 899999999999999887532   223468999999999998888999999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEEEE
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFF  210 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (259)
                      ++.+++++               .++..+++++.++|||||.+++.++..+...  ... ....|....           
T Consensus       151 ~~~~l~~~---------------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~--~~~-~~~~~~~~~-----------  201 (261)
T PLN02233        151 MGYGLRNV---------------VDRLKAMQEMYRVLKPGSRVSILDFNKSTQP--FTT-SMQEWMIDN-----------  201 (261)
T ss_pred             EecccccC---------------CCHHHHHHHHHHHcCcCcEEEEEECCCCCcH--HHH-HHHHHHHhh-----------
Confidence            98888766               4678899999999999999999988764321  100 101111000           


Q ss_pred             EEEEeCCCCCchhhhhhccCCCCCCcccccccccccccccccccCCCC
Q 025039          211 YILRKGKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEM  258 (259)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (259)
                      .+.+.+... .... .|   .++..++..|....+..+.++++||+.+
T Consensus       202 ~~~~~~~~~-~~~~-~y---~~l~~s~~~f~s~~el~~ll~~aGF~~~  244 (261)
T PLN02233        202 VVVPVATGY-GLAK-EY---EYLKSSINEYLTGEELEKLALEAGFSSA  244 (261)
T ss_pred             hhhHHHHHh-CChH-HH---HHHHHHHHhcCCHHHHHHHHHHCCCCEE
Confidence            011111111 1111 22   2266778889999999999999999764

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.76  E-value=2.8e-18  Score=132.69  Aligned_cols=156  Identities=26%  Similarity=0.463  Sum_probs=121.3

Q ss_pred             CCCCCCCCccchhhhcCCC---------Ccccccccch--HHHHhhcccC-----CCCC-cEEEEcCCCCcchHHHHhcC
Q 025039           18 PTTSAYLDPHYWDERFSDE---------EHYEWLKDYS--HFRHLVQPHI-----KPNS-SVLELGCGNSRLSEGLYNDG   80 (259)
Q Consensus        18 ~~~~~~~~~~~w~~~~~~~---------~~~~w~~~~~--~~~~~l~~~~-----~~~~-~vLDiGcG~G~~~~~l~~~~   80 (259)
                      -..+..+.++||++.|..+         ..--|+....  ++..++...+     .+.+ +|||+|||+|.++..|++.|
T Consensus        10 l~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~eg   89 (227)
T KOG1271|consen   10 LGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEG   89 (227)
T ss_pred             ccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhc
Confidence            3445667799999999642         1223776532  3444444332     3344 99999999999999999999


Q ss_pred             CC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHH
Q 025039           81 IT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMA  158 (259)
Q Consensus        81 ~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  158 (259)
                      +. .++|+|+|+++++.|+..++..++++ |++.+.|+.+..+..++||+|+..+.++++...+..       ....+..
T Consensus        90 f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~-------~~~r~~~  162 (227)
T KOG1271|consen   90 FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDG-------PVGRLVV  162 (227)
T ss_pred             CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCC-------cccceee
Confidence            88 69999999999999999999999988 999999999877777899999999999988544221       1123367


Q ss_pred             HHHHHHhcccCCcEEEEEecCC
Q 025039          159 MLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       159 ~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++..+.++|+|||++++..++-
T Consensus       163 Y~d~v~~ll~~~gifvItSCN~  184 (227)
T KOG1271|consen  163 YLDSVEKLLSPGGIFVITSCNF  184 (227)
T ss_pred             ehhhHhhccCCCcEEEEEecCc
Confidence            8999999999999999987653

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.76  E-value=2.7e-18  Score=122.36  Aligned_cols=95  Identities=35%  Similarity=0.598  Sum_probs=81.8

Q ss_pred             EEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCC
Q 025039           63 LELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNS  142 (259)
Q Consensus        63 LDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~  142 (259)
                      ||+|||+|..+..+++.+..+++++|+++.+++.++++....   .+.+..+|+.++++++++||+|++..+++++    
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~----   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL----   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGS----
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeec----
Confidence            899999999999999993339999999999999999987653   3569999999999999999999999998876    


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          143 GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       143 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                                 ++...+++++.|+|||||++++
T Consensus        74 -----------~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   74 -----------EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             -----------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -----------cCHHHHHHHHHHHcCcCeEEeC
Confidence                       6889999999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02244 tocopherol O-methyltransferase

Probab=99.76  E-value=1.2e-17  Score=146.45  Aligned_cols=109  Identities=25%  Similarity=0.362  Sum_probs=95.6

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .++.+|||+|||+|..+..+++....+|+|+|+|+.+++.+++++...+.. ++++.++|+.++++++++||+|++..++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~  196 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG  196 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence            467899999999999999999874239999999999999999988877764 5999999999988888999999998888


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +|+               .+...+++++.++|||||.++++++..
T Consensus       197 ~h~---------------~d~~~~l~e~~rvLkpGG~lvi~~~~~  226 (340)
T PLN02244        197 EHM---------------PDKRKFVQELARVAAPGGRIIIVTWCH  226 (340)
T ss_pred             hcc---------------CCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            776               456789999999999999999987654

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.75  E-value=1.3e-18  Score=141.23  Aligned_cols=106  Identities=28%  Similarity=0.437  Sum_probs=94.0

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      ++.+|||+|||.|.++..+++.|. +|+|+|+++++++.|+....+.++ .+.+.+..+.++....++||+|+|..+++|
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVlEH  136 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVLEH  136 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence            789999999999999999999997 999999999999999999888776 466777777776655589999999999987


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +               +++..++..+.+++||||.+++.+..+
T Consensus       137 v---------------~dp~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         137 V---------------PDPESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             c---------------CCHHHHHHHHHHHcCCCcEEEEecccc
Confidence            7               677789999999999999999988764

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.74  E-value=2.5e-17  Score=131.61  Aligned_cols=129  Identities=26%  Similarity=0.465  Sum_probs=99.3

Q ss_pred             ccchhhhcCCCCcccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC
Q 025039           26 PHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG  105 (259)
Q Consensus        26 ~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~  105 (259)
                      .+||.+.|.....      .+.+...+ ..+ +++++||+|||.|+.+.+|++.|. .|+++|.|+.+++.+++.+...+
T Consensus         6 ~~y~~kky~~~~~------hs~v~~a~-~~~-~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~   76 (192)
T PF03848_consen    6 EDYFHKKYGLTPT------HSEVLEAV-PLL-KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEG   76 (192)
T ss_dssp             TTHHHHHHTB----------HHHHHHC-TTS--SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhCCCCC------cHHHHHHH-hhc-CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcC
Confidence            5677777755432      23344433 233 567999999999999999999999 89999999999999999888888


Q ss_pred             CCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          106 YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       106 ~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      + .++..+.|+.+..++ +.||+|++..+++++             ..+...++++.+.+.++|||+++++++
T Consensus        77 l-~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL-------------~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   77 L-DIRTRVADLNDFDFP-EEYDFIVSTVVFMFL-------------QRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             --TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS--------------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             c-eeEEEEecchhcccc-CCcCEEEEEEEeccC-------------CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            7 489999999887765 689999998888887             556778999999999999999998665

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.73  E-value=1.9e-17  Score=139.86  Aligned_cols=117  Identities=19%  Similarity=0.289  Sum_probs=97.1

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCc-CCCCc
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLP-FSNDC  125 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~-~~~~~  125 (259)
                      +..++.....++.+|||+|||+|..+..+++.+. +|+++|+|+.|++.|++++...++. +++++++|+.++. ..+++
T Consensus        34 ~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~  112 (255)
T PRK11036         34 LDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETP  112 (255)
T ss_pred             HHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCC
Confidence            3344443334678999999999999999999987 9999999999999999998887763 5889999987753 45678


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ||+|++..+++++               .++..+++++.++|||||++++..++.
T Consensus       113 fD~V~~~~vl~~~---------------~~~~~~l~~~~~~LkpgG~l~i~~~n~  152 (255)
T PRK11036        113 VDLILFHAVLEWV---------------ADPKSVLQTLWSVLRPGGALSLMFYNA  152 (255)
T ss_pred             CCEEEehhHHHhh---------------CCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence            9999999998776               455689999999999999999876654

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.73  E-value=4.9e-17  Score=131.93  Aligned_cols=105  Identities=16%  Similarity=0.289  Sum_probs=89.2

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      ++.+|||+|||+|..+..+++.|. +|+++|+|+.+++.+++++...++ .+.+...|+...+++ ++||+|+++.++++
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~  106 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALN-EDYDFIFSTVVFMF  106 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhcccc-CCCCEEEEeccccc
Confidence            467999999999999999999887 999999999999999998877776 377777787665544 57999999998877


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +             +..+...+++++.++|+|||+++++++
T Consensus       107 ~-------------~~~~~~~~l~~~~~~LkpgG~lli~~~  134 (195)
T TIGR00477       107 L-------------QAGRVPEIIANMQAHTRPGGYNLIVAA  134 (195)
T ss_pred             C-------------CHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence            6             446788999999999999999776643

Part of a tellurite-reducing operon tehA and tehB

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.72  E-value=1.3e-16  Score=128.03  Aligned_cols=106  Identities=23%  Similarity=0.291  Sum_probs=90.6

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      ..++++.+|||+|||+|..+..++...+. +|+++|+++.+++.++++++..+.+++++.++|+.+++. .++||+|+++
T Consensus        41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~  119 (187)
T PRK00107         41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSR  119 (187)
T ss_pred             hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEc
Confidence            44566899999999999999999876544 999999999999999999999988779999999988765 6789999986


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ..                   .....+++.+.++|+|||++++....
T Consensus       120 ~~-------------------~~~~~~l~~~~~~LkpGG~lv~~~~~  147 (187)
T PRK00107        120 AV-------------------ASLSDLVELCLPLLKPGGRFLALKGR  147 (187)
T ss_pred             cc-------------------cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence            41                   24567999999999999999998654

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.72  E-value=2.1e-17  Score=143.09  Aligned_cols=107  Identities=18%  Similarity=0.267  Sum_probs=93.2

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+++++++.|+++....+. .++.++++|+.++++.+++||+|++..+++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe  209 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE  209 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence            467999999999999999998877 899999999999999988655443 358899999988877778999999999998


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      |+               .+...+++++.++|||||.+++.+...
T Consensus       210 Hv---------------~d~~~~L~~l~r~LkPGG~liist~nr  238 (322)
T PLN02396        210 HV---------------ANPAEFCKSLSALTIPNGATVLSTINR  238 (322)
T ss_pred             hc---------------CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence            87               466789999999999999999987654

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.72  E-value=1.1e-16  Score=133.22  Aligned_cols=112  Identities=23%  Similarity=0.450  Sum_probs=95.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..+..+++. ++. +++|+|+++.+++.+++++...+.+++.++++|+.++++++++||+|++..
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  122 (231)
T TIGR02752        43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF  122 (231)
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence            456789999999999999999876 444 899999999999999999887777779999999988877778999999987


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      +++++               .+..++++++.++|+|||.+++.+...+.
T Consensus       123 ~l~~~---------------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~  156 (231)
T TIGR02752       123 GLRNV---------------PDYMQVLREMYRVVKPGGKVVCLETSQPT  156 (231)
T ss_pred             ccccC---------------CCHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence            77655               35568999999999999999988766543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.71  E-value=6.3e-17  Score=135.76  Aligned_cols=114  Identities=22%  Similarity=0.339  Sum_probs=101.2

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEec
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      ..+++|.+|||||||-|.+++.+++....+|+|+++|+++.+.++++++..|+. ++++...|..++.   +.||-|++.
T Consensus        68 l~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSv  144 (283)
T COG2230          68 LGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSV  144 (283)
T ss_pred             cCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeeh
Confidence            356799999999999999999999985239999999999999999999999997 5999999988865   459999999


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF  183 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  183 (259)
                      ++++|+             +.+....+++.+.++|+|||.+++.+...+..
T Consensus       145 gmfEhv-------------g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~  182 (283)
T COG2230         145 GMFEHV-------------GKENYDDFFKKVYALLKPGGRMLLHSITGPDQ  182 (283)
T ss_pred             hhHHHh-------------CcccHHHHHHHHHhhcCCCceEEEEEecCCCc
Confidence            999998             55778999999999999999999988776553

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.70  E-value=1.4e-16  Score=133.97  Aligned_cols=113  Identities=21%  Similarity=0.348  Sum_probs=94.0

Q ss_pred             hhcccCCCCCcEEEEcCCCCcchHHHHhc--CCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCce
Q 025039           51 LVQPHIKPNSSVLELGCGNSRLSEGLYND--GIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCF  126 (259)
Q Consensus        51 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~f  126 (259)
                      ++...+.++.+|||+|||+|..+..+++.  .+. +++++|+|+.|++.|++++...+.. +++++++|+.+++++  .+
T Consensus        49 ~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~  126 (247)
T PRK15451         49 LAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NA  126 (247)
T ss_pred             HHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CC
Confidence            33444567889999999999999888773  333 9999999999999999999876654 589999999887653  58


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |+|+++.+++++             ...+...+++++.++|+|||.+++.+.
T Consensus       127 D~vv~~~~l~~l-------------~~~~~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451        127 SMVVLNFTLQFL-------------EPSERQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             CEEehhhHHHhC-------------CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            999999888877             345678999999999999999999863

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.70  E-value=1.6e-16  Score=136.46  Aligned_cols=104  Identities=20%  Similarity=0.358  Sum_probs=90.9

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      ++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.+++++...++ ++.+...|+....+ +++||+|++..++++
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~  196 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI-QEEYDFILSTVVLMF  196 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc-cCCccEEEEcchhhh
Confidence            456999999999999999999987 999999999999999999888776 78888888876554 578999999998887


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +             +.++...+++++.++|+|||+++++.
T Consensus       197 l-------------~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        197 L-------------NRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             C-------------CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            6             45678899999999999999977754

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.70  E-value=3.6e-16  Score=128.37  Aligned_cols=141  Identities=17%  Similarity=0.235  Sum_probs=109.6

Q ss_pred             CCccchhhhcCCCCccccccc--chHHHHhhccc-CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHH
Q 025039           24 LDPHYWDERFSDEEHYEWLKD--YSHFRHLVQPH-IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQER  100 (259)
Q Consensus        24 ~~~~~w~~~~~~~~~~~w~~~--~~~~~~~l~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~  100 (259)
                      .+.+||+++|+... ..|...  .+.+...+... ..++.+||++|||.|..+.+|++.|. +|+|+|+|+.+++.+.+.
T Consensus         7 ~~~~fW~~rw~~~~-~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e   84 (226)
T PRK13256          7 NNNQYWLDRWQNDD-VGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQ   84 (226)
T ss_pred             CCHHHHHHHHhcCC-CCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHH
Confidence            45889999998864 345332  23343444432 34568999999999999999999999 899999999999998663


Q ss_pred             Hh------------hcCCCCeEEEEcccCCCcCC---CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHh
Q 025039          101 LL------------LKGYKEVKVLEADMLDLPFS---NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHR  165 (259)
Q Consensus       101 ~~------------~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (259)
                      ..            .....++++.++|+++++..   .+.||+|+....|.++             +.+...++++.+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al-------------pp~~R~~Y~~~l~~  151 (226)
T PRK13256         85 NTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL-------------PNDLRTNYAKMMLE  151 (226)
T ss_pred             cCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC-------------CHHHHHHHHHHHHH
Confidence            21            01113689999999998631   3579999999989888             66788999999999


Q ss_pred             cccCCcEEEEEecC
Q 025039          166 VLKPDGLFISVSFG  179 (259)
Q Consensus       166 ~LkpgG~l~~~~~~  179 (259)
                      +|+|||.++++++.
T Consensus       152 lL~pgg~llll~~~  165 (226)
T PRK13256        152 VCSNNTQILLLVME  165 (226)
T ss_pred             HhCCCcEEEEEEEe
Confidence            99999999998764

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.69  E-value=5.9e-17  Score=117.53  Aligned_cols=96  Identities=31%  Similarity=0.580  Sum_probs=81.6

Q ss_pred             EEEEcCCCCcchHHHHhcC---C-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec-ceee
Q 025039           62 VLELGCGNSRLSEGLYNDG---I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK-ATME  136 (259)
Q Consensus        62 vLDiGcG~G~~~~~l~~~~---~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~-~~l~  136 (259)
                      |||+|||+|..+..+++..   + .+++++|+|+.|++.++++....+. ++++.++|+.+++..+++||+|++. .+++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~   79 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH   79 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence            7999999999999999874   3 3999999999999999999887665 7899999999988777899999995 4488


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCc
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG  171 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  171 (259)
                      ++             ..++...+++++.++|+|||
T Consensus        80 ~~-------------~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   80 HL-------------SPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GS-------------SHHHHHHHHHHHHHTEEEEE
T ss_pred             CC-------------CHHHHHHHHHHHHHHhCCCC
Confidence            76             66889999999999999998

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.69  E-value=3.6e-16  Score=132.55  Aligned_cols=118  Identities=18%  Similarity=0.308  Sum_probs=95.8

Q ss_pred             HHHhhcc-cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCce
Q 025039           48 FRHLVQP-HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCF  126 (259)
Q Consensus        48 ~~~~l~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  126 (259)
                      ...++.. .+.++.+|||+|||+|..+..+++....+|+++|+|+.+++.+++++...  +++.+.++|+.+.++++++|
T Consensus        41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--~~i~~~~~D~~~~~~~~~~F  118 (263)
T PTZ00098         41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--NKIEFEANDILKKDFPENTF  118 (263)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--CceEEEECCcccCCCCCCCe
Confidence            4444432 35678999999999999999887753239999999999999999987542  36899999998888878899


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      |+|++..++.|+             ...+...+++++.++|||||.+++.++..
T Consensus       119 D~V~s~~~l~h~-------------~~~d~~~~l~~i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098        119 DMIYSRDAILHL-------------SYADKKKLFEKCYKWLKPNGILLITDYCA  159 (263)
T ss_pred             EEEEEhhhHHhC-------------CHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            999998776655             33578899999999999999999987643

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.68  E-value=2.7e-16  Score=124.51  Aligned_cols=136  Identities=19%  Similarity=0.364  Sum_probs=99.6

Q ss_pred             ccchhhhcCCCCccc----ccccchHHHHhhcccCC--CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHH
Q 025039           26 PHYWDERFSDEEHYE----WLKDYSHFRHLVQPHIK--PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQE   99 (259)
Q Consensus        26 ~~~w~~~~~~~~~~~----w~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~   99 (259)
                      .++|++.+.+++.+.    ||... +....+...++  .-.++||+|||.|.++..|+.+.- +++++|+|+.+++.|++
T Consensus         6 ~~~l~~~la~~DPW~~~~~~YE~~-K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~Al~~Ar~   83 (201)
T PF05401_consen    6 YQLLNRELANDDPWGFETSWYERR-KYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCD-RLLAVDISPRALARARE   83 (201)
T ss_dssp             HHHHHHHHTSSSGGGTTT-HHHHH-HHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCCCCHHHHH-HHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHHHHHHHH
Confidence            567777777766543    33321 22223321122  337899999999999999999976 99999999999999999


Q ss_pred             HHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          100 RLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       100 ~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ++...  ++|++.+.|+.+. .+.++||+|+++.+++++            .+.+++..++..+...|+|||.+++..+
T Consensus        84 Rl~~~--~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL------------~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen   84 RLAGL--PHVEWIQADVPEF-WPEGRFDLIVLSEVLYYL------------DDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             HTTT---SSEEEEES-TTT----SS-EEEEEEES-GGGS------------SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hcCCC--CCeEEEECcCCCC-CCCCCeeEEEEehHhHcC------------CCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            98853  6899999999774 367899999999999888            3457889999999999999999999765

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.67  E-value=4.2e-16  Score=131.37  Aligned_cols=103  Identities=22%  Similarity=0.375  Sum_probs=88.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      ++.+|||+|||+|.++..+++.+. +++++|+|+.|++.++++..     ...++++|+..+++++++||+|+++.++++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~  115 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLATATFDLAWSNLAVQW  115 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence            467899999999999999988876 99999999999999998743     356788999888887889999999888765


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      .               .+...++.++.++|+|||.+++.++...
T Consensus       116 ~---------------~d~~~~l~~~~~~Lk~gG~l~~~~~~~~  144 (251)
T PRK10258        116 C---------------GNLSTALRELYRVVRPGGVVAFTTLVQG  144 (251)
T ss_pred             c---------------CCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence            4               4667899999999999999999887653

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.67  E-value=1.1e-15  Score=121.36  Aligned_cols=112  Identities=23%  Similarity=0.415  Sum_probs=91.8

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ++.+|||+|||+|.++..+++.++. +|+++|+++.+++.+++++..+++.++++...|+.+.. +.++||+|+++++++
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-~~~~fD~Iv~NPP~~  109 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-PDGKFDLIVSNPPFH  109 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-CTTCEEEEEE---SB
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-cccceeEEEEccchh
Confidence            6789999999999999999999887 79999999999999999999999877999999987733 467999999998864


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .-.          ..+.....++++.+.++|+|||.++++....
T Consensus       110 ~~~----------~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~  143 (170)
T PF05175_consen  110 AGG----------DDGLDLLRDFIEQARRYLKPGGRLFLVINSH  143 (170)
T ss_dssp             TTS----------HCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             ccc----------ccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence            321          1134567899999999999999998765443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.67  E-value=5.9e-16  Score=132.00  Aligned_cols=110  Identities=24%  Similarity=0.381  Sum_probs=94.1

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      .+.++.+|||+|||+|..+..+++. +.. +|+++|+++.+++.|+++....+++++++..+|+.++++++++||+|+++
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~  153 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN  153 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence            3567899999999999988777665 554 79999999999999999988888878999999998888777899999998


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .++++.               .+...+++++.++|||||++++.++.
T Consensus       154 ~v~~~~---------------~d~~~~l~~~~r~LkpGG~l~i~~~~  185 (272)
T PRK11873        154 CVINLS---------------PDKERVFKEAFRVLKPGGRFAISDVV  185 (272)
T ss_pred             CcccCC---------------CCHHHHHHHHHHHcCCCcEEEEEEee
Confidence            887654               35568999999999999999997653

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.66  E-value=8.4e-16  Score=125.37  Aligned_cols=105  Identities=19%  Similarity=0.324  Sum_probs=87.1

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      .+.++.+|||+|||+|..+..+++..+ .+++|+|+|+.+++.|+++.     +++.+.++|+.+ ++++++||+|++++
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~~~sfD~V~~~~  113 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFKDNFFDLVLTKG  113 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCCCCCEEEEEECC
Confidence            456778999999999999999988732 39999999999999999864     356778888887 77788999999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +++|+             +.+...++++++.+++  ++.+++.++..
T Consensus       114 vL~hl-------------~p~~~~~~l~el~r~~--~~~v~i~e~~~  145 (204)
T TIGR03587       114 VLIHI-------------NPDNLPTAYRELYRCS--NRYILIAEYYN  145 (204)
T ss_pred             hhhhC-------------CHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence            99887             4467889999999998  56777776543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00740 methyltransferase, putative

Probab=99.66  E-value=1.6e-15  Score=126.99  Aligned_cols=109  Identities=22%  Similarity=0.314  Sum_probs=91.5

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcC--CC-eEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEE
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDG--IT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVI  130 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~  130 (259)
                      .+.++.+|||+|||+|..+..+++..  +. +++|+|+|+.|++.|++++...+. .+++++++|+.+++++  .+|+|+
T Consensus        50 ~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~  127 (239)
T TIGR00740        50 FVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVI  127 (239)
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEe
Confidence            34577899999999999999998863  33 899999999999999999876543 2589999999887754  589999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +..+++++             ...+...+++++.++|+|||.+++.+.
T Consensus       128 ~~~~l~~~-------------~~~~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740       128 LNFTLQFL-------------PPEDRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             eecchhhC-------------CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence            99888876             445678999999999999999999864

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.65  E-value=9.1e-16  Score=130.21  Aligned_cols=108  Identities=30%  Similarity=0.449  Sum_probs=87.5

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      .+++|.+|||||||.|.++..+++. |. +|+|+.+|++..+.+++++...|+.+ +++...|..+++   .+||.|++.
T Consensus        59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi  134 (273)
T PF02353_consen   59 GLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSI  134 (273)
T ss_dssp             T--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEE
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEE
Confidence            4679999999999999999999999 66 99999999999999999999999875 899999988765   389999999


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++++|+             +..+...+++++.++|+|||++++..+.
T Consensus       135 ~~~Ehv-------------g~~~~~~~f~~~~~~LkpgG~~~lq~i~  168 (273)
T PF02353_consen  135 EMFEHV-------------GRKNYPAFFRKISRLLKPGGRLVLQTIT  168 (273)
T ss_dssp             SEGGGT-------------CGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred             echhhc-------------ChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence            999887             4567889999999999999999986543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.65  E-value=5.2e-16  Score=131.11  Aligned_cols=99  Identities=23%  Similarity=0.269  Sum_probs=85.0

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .++.+|||+|||+|.++..+++..+. +|+|+|+|+.|++.++++       ++++.++|+.++. +.++||+|+++.++
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-~~~~fD~v~~~~~l   99 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK-PKPDTDVVVSNAAL   99 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC-CCCCceEEEEehhh
Confidence            46789999999999999999988544 899999999999999763       4788889987764 45789999999999


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +++               .+...+++++.++|||||.+++..+
T Consensus       100 ~~~---------------~d~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103        100 QWV---------------PEHADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             hhC---------------CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence            876               3567899999999999999998754

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.65  E-value=6.3e-16  Score=126.98  Aligned_cols=139  Identities=23%  Similarity=0.431  Sum_probs=103.6

Q ss_pred             CccchhhhcCCCCccccccc--chHHHHhhcc-cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHH
Q 025039           25 DPHYWDERFSDEEHYEWLKD--YSHFRHLVQP-HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERL  101 (259)
Q Consensus        25 ~~~~w~~~~~~~~~~~w~~~--~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~  101 (259)
                      +.++|+++|+.... .|...  .+.+..++.. ...++.+||+.|||.|..+.+|++.|. +|+|+|+|+.+++.+.+..
T Consensus         2 ~~~~W~~~w~~~~~-~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~   79 (218)
T PF05724_consen    2 DPEFWEERWQEGQT-PWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEEN   79 (218)
T ss_dssp             HHHHHHHHHHTT---TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHC
T ss_pred             CHHHHHHHHhcCCC-CCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHh
Confidence            46899999988643 34443  4556666554 345677999999999999999999999 9999999999999985432


Q ss_pred             hh------------cCCCCeEEEEcccCCCcCCC-CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhccc
Q 025039          102 LL------------KGYKEVKVLEADMLDLPFSN-DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLK  168 (259)
Q Consensus       102 ~~------------~~~~~v~~~~~d~~~~~~~~-~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk  168 (259)
                      ..            ....+|++.++|+++++... ++||+|+....|.++             +.+...++.+.+.++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Al-------------pp~~R~~Ya~~l~~ll~  146 (218)
T PF05724_consen   80 NLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCAL-------------PPEMRERYAQQLASLLK  146 (218)
T ss_dssp             TTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS--------------GGGHHHHHHHHHHCEE
T ss_pred             ccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccC-------------CHHHHHHHHHHHHHHhC
Confidence            21            01234789999999976433 479999999888877             55788899999999999


Q ss_pred             CCcEEEEEec
Q 025039          169 PDGLFISVSF  178 (259)
Q Consensus       169 pgG~l~~~~~  178 (259)
                      |||.++++++
T Consensus       147 p~g~~lLi~l  156 (218)
T PF05724_consen  147 PGGRGLLITL  156 (218)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCcEEEEEE
Confidence            9999555443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.64  E-value=1.7e-15  Score=121.29  Aligned_cols=100  Identities=20%  Similarity=0.301  Sum_probs=85.0

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ++.+|||+|||+|..+..++..++. +|+++|+|+.+++.++++++..++++++++++|+.++. ..++||+|++.. ++
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~  119 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA  119 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence            4789999999999999999877655 89999999999999999998888877999999998864 356899999865 32


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                                        ....+++.+.++|+|||.+++..
T Consensus       120 ------------------~~~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       120 ------------------SLNVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             ------------------CHHHHHHHHHHhcCCCCEEEEEc
Confidence                              33467888899999999999874

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.64  E-value=1.1e-15  Score=119.69  Aligned_cols=102  Identities=30%  Similarity=0.575  Sum_probs=83.3

Q ss_pred             cccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           53 QPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        53 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      .....++.+|||+|||+|.++..+++.+. +++|+|+++.+++.          ..+.....+......++++||+|+|.
T Consensus        17 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~   85 (161)
T PF13489_consen   17 LPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICN   85 (161)
T ss_dssp             HTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEE
T ss_pred             hcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhH
Confidence            33356789999999999999999999988 99999999999988          12333333333334456899999999


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .+++++               .+...+|+++.++|||||++++.++..
T Consensus        86 ~~l~~~---------------~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   86 DVLEHL---------------PDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             SSGGGS---------------SHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             HHHhhc---------------ccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            999887               478899999999999999999988765

...

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=99.64  E-value=2.3e-15  Score=133.21  Aligned_cols=201  Identities=34%  Similarity=0.535  Sum_probs=166.6

Q ss_pred             CCCCCCCCCCccchhhhcCCC--CcccccccchHHHHhhcccCCCCC-cEEEEcCCCCcchHHHHhcCCCeEEEeeCCHH
Q 025039           16 GPPTTSAYLDPHYWDERFSDE--EHYEWLKDYSHFRHLVQPHIKPNS-SVLELGCGNSRLSEGLYNDGITAITCIDLSAV   92 (259)
Q Consensus        16 ~~~~~~~~~~~~~w~~~~~~~--~~~~w~~~~~~~~~~l~~~~~~~~-~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~   92 (259)
                      .|.+.-.|.+.+||+.+|...  ..++|+..+..+...+..++.+.. ++|.+|||+..+...+.+.|+..++.+|+|+.
T Consensus         3 ~p~~~~~~~s~~~wd~rf~~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V   82 (482)
T KOG2352|consen    3 LPQEQLSFGSVVYWDKRFQPRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSV   82 (482)
T ss_pred             CcccccccCcchhhhhhccccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHH
Confidence            467778899999999999875  678899998888888888887777 99999999999999999999989999999999


Q ss_pred             HHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcE
Q 025039           93 AVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL  172 (259)
Q Consensus        93 ~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  172 (259)
                      .++.+..+.. ...+-+.+..+|+..+.+++++||+|+..+.+|+++.+....|.+     ......+.+++++|+|||+
T Consensus        83 ~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~-----~~v~~~~~eVsrvl~~~gk  156 (482)
T KOG2352|consen   83 VVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNT-----AHVSNMLDEVSRVLAPGGK  156 (482)
T ss_pred             HHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhh-----HHhhHHHhhHHHHhccCCE
Confidence            9999987754 333458899999999999999999999999999999888777743     5567889999999999999


Q ss_pred             EEEEecC--CccccccccCCCCCCcEEEEEEeCCeEEEEEEEEEeCCCCCch
Q 025039          173 FISVSFG--QPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSAD  222 (259)
Q Consensus       173 l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (259)
                      ++.+++.  .++.+...+...-..|........+..++.+.++.++..-...
T Consensus       157 ~~svtl~~~vp~~r~~e~~~~~p~G~~~~~~~s~~~~l~~v~l~~gq~~~~~  208 (482)
T KOG2352|consen  157 YISVTLVQVVPQGRKPEWLFGSPGGSKQMNVSSSGERLAIVALHRGQQYSTP  208 (482)
T ss_pred             EEEEEeeeeccCCCCeeeeecCccchhhhhhhccCcceEEEEeccCccccch
Confidence            9999885  4555554444444456666667777888999999888766654

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.64  E-value=3.4e-16  Score=128.11  Aligned_cols=103  Identities=26%  Similarity=0.392  Sum_probs=84.4

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC------CeEEEEcccCCCcCCCCceeEEEec
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK------EVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      +.+|||+|||+|.++..|++.|. .|+|+|+++++++.|++........      .+.+.+.++....   +.||.|+|.
T Consensus        90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs  165 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS  165 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence            47899999999999999999998 9999999999999999984333221      1334445554433   469999999


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .+++|+               .+++++++.+.++|||||.+++.+..+
T Consensus       166 evleHV---------------~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  166 EVLEHV---------------KDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             HHHHHH---------------hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence            998765               899999999999999999999987654

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.63  E-value=1.6e-15  Score=131.97  Aligned_cols=105  Identities=21%  Similarity=0.318  Sum_probs=87.0

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC-CCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ++.+|||+|||+|..+..++..|+..|+|+|+|+.++..++......+ -.++.+..+|+.+++. .++||+|+|.++++
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~  200 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY  200 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence            578999999999999999999987689999999999876554322221 1368999999988887 67899999999987


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |.               .++..+++++++.|+|||.+++.+.
T Consensus       201 H~---------------~dp~~~L~~l~~~LkpGG~lvl~~~  227 (322)
T PRK15068        201 HR---------------RSPLDHLKQLKDQLVPGGELVLETL  227 (322)
T ss_pred             cc---------------CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence            76               4667899999999999999998653

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.63  E-value=8.7e-17  Score=116.13  Aligned_cols=96  Identities=32%  Similarity=0.552  Sum_probs=64.7

Q ss_pred             EEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEecceeeeee
Q 025039           63 LELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATMEVLF  139 (259)
Q Consensus        63 LDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~~  139 (259)
                      ||+|||+|.++..+++..+. +++++|+|+.|++.+++++......+......+..+..  ...++||+|++..+++++ 
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l-   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL-   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence            79999999999999998555 99999999999999999888766444444444333322  122589999999999887 


Q ss_pred             eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEE
Q 025039          140 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF  173 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  173 (259)
                                    ++...+++++.++|+|||+|
T Consensus        80 --------------~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 --------------EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             --------------S-HHHHHHHHTTT-TSS-EE
T ss_pred             --------------hhHHHHHHHHHHHcCCCCCC
Confidence                          57789999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.63  E-value=2.8e-15  Score=137.51  Aligned_cols=109  Identities=23%  Similarity=0.340  Sum_probs=92.3

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.++.+|||+|||+|..+..+++....+++|+|+|+.+++.|+++....+ .++.+.++|+...++++++||+|++..++
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~I~s~~~l  342 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNSFDVIYSRDTI  342 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCCEEEEEECCcc
Confidence            35678999999999999998887643389999999999999998865333 35899999998887777899999999988


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +|+               .+...+++++.++|+|||.+++.++..
T Consensus       343 ~h~---------------~d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        343 LHI---------------QDKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             ccc---------------CCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            776               466799999999999999999987643

>PRK05785 hypothetical protein; Provisional

Probab=99.63  E-value=2.4e-15  Score=124.72  Aligned_cols=161  Identities=14%  Similarity=0.147  Sum_probs=110.5

Q ss_pred             HHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeE
Q 025039           49 RHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDV  128 (259)
Q Consensus        49 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  128 (259)
                      ...+.....++.+|||+|||||..+..+++....+|+|+|+|++|++.|+++.        .++++|+.++++++++||+
T Consensus        42 ~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp~~d~sfD~  113 (226)
T PRK05785         42 VKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------DKVVGSFEALPFRDKSFDV  113 (226)
T ss_pred             HHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------ceEEechhhCCCCCCCEEE
Confidence            33444334457899999999999999999884228999999999999998641        3467899889998999999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEE
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHY  208 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (259)
                      |++..+++++               .+..++++++.++|||.  +++++++.+...  ++. .-+.            .|
T Consensus       114 v~~~~~l~~~---------------~d~~~~l~e~~RvLkp~--~~ile~~~p~~~--~~~-~~~~------------~y  161 (226)
T PRK05785        114 VMSSFALHAS---------------DNIEKVIAEFTRVSRKQ--VGFIAMGKPDNV--IKR-KYLS------------FY  161 (226)
T ss_pred             EEecChhhcc---------------CCHHHHHHHHHHHhcCc--eEEEEeCCCCcH--HHH-HHHH------------HH
Confidence            9999888765               57789999999999994  333445443211  111 0000            11


Q ss_pred             EEEEEEe-CCCCCchhhhhhccCCCCCCcccccccccccccccccc
Q 025039          209 FFYILRK-GKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRT  253 (259)
Q Consensus       209 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (259)
                      ...+++. +.....+.. .|   .|+.+++..|...-+..+++++.
T Consensus       162 ~~~~~P~~~~~~~~~~~-~Y---~yl~~si~~f~~~~~~~~~~~~~  203 (226)
T PRK05785        162 LRYIMPYIACLAGAKCR-DY---KYIYYIYERLPTNSFHREIFEKY  203 (226)
T ss_pred             HHHHHHHHHHHhcCChH-HH---HHHHHHHHHCCCHHHHHHHHHHH
Confidence            1123332 222223232 34   44888999999988888888764

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.62  E-value=6.1e-15  Score=130.35  Aligned_cols=177  Identities=14%  Similarity=0.174  Sum_probs=116.7

Q ss_pred             CccchhhhcCCCC-cccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHh
Q 025039           25 DPHYWDERFSDEE-HYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLL  102 (259)
Q Consensus        25 ~~~~w~~~~~~~~-~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~  102 (259)
                      ..+||...|.... ..........+...+...+.++.+|||+|||+|.+++.++...+. +++++|+|+.+++.|++++.
T Consensus       217 ~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~  296 (423)
T PRK14966        217 VREFYGRRFAVNPNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAA  296 (423)
T ss_pred             eeeecCcEEEeCCCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence            3667776665422 222122223344444444556679999999999999999876544 89999999999999999998


Q ss_pred             hcCCCCeEEEEcccCCCcC-CCCceeEEEecceeeeee----------eCCCCCCCCCchhHHHHHHHHHHHHhcccCCc
Q 025039          103 LKGYKEVKVLEADMLDLPF-SNDCFDVVIEKATMEVLF----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG  171 (259)
Q Consensus       103 ~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  171 (259)
                      ..+. ++.++++|+.+... ..++||+|+|++++-..-          .++...+....++.....++++.+.++|+|||
T Consensus       297 ~~g~-rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG  375 (423)
T PRK14966        297 DLGA-RVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGG  375 (423)
T ss_pred             HcCC-cEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCc
Confidence            7774 78999999866432 235799999998752110          00111122334556667899999999999999


Q ss_pred             EEEEE-ecCCccccccccCCCCCCcEEEEEEe
Q 025039          172 LFISV-SFGQPHFRRPFFNAPQFTWSVEWITF  202 (259)
Q Consensus       172 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (259)
                      .+++. .+.+......++...++.......++
T Consensus       376 ~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl  407 (423)
T PRK14966        376 FLLLEHGFDQGAAVRGVLAENGFSGVETLPDL  407 (423)
T ss_pred             EEEEEECccHHHHHHHHHHHCCCcEEEEEEcC
Confidence            98763 34455555555555554433333444

>TIGR00452 methyltransferase, putative

Probab=99.62  E-value=2.9e-15  Score=129.25  Aligned_cols=106  Identities=15%  Similarity=0.195  Sum_probs=85.0

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC-CCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .++.+|||+|||+|.++..++..|...|+|+|+|+.|+..++......+ ...+.+...++.+++.. .+||+|+|.+++
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL  198 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVL  198 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchh
Confidence            4578999999999999999998887689999999999876543222111 13577888888777643 489999999999


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|.               .++..+|++++++|+|||.|++.+.
T Consensus       199 ~H~---------------~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       199 YHR---------------KSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             hcc---------------CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence            776               4667899999999999999998754

Known examples to date are restricted to the proteobacteria.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.62  E-value=4.8e-15  Score=123.50  Aligned_cols=106  Identities=26%  Similarity=0.487  Sum_probs=91.5

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .+.+|||+|||+|..+..+++.++. +++++|+++.+++.++++..    +++.++.+|+.+.++++++||+|++..+++
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~  109 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ  109 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence            4578999999999999999998875 78999999999999998764    367889999988877778999999998887


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      ++               .+...++.++.++|+|||.+++.++....
T Consensus       110 ~~---------------~~~~~~l~~~~~~L~~~G~l~~~~~~~~~  140 (240)
T TIGR02072       110 WC---------------DDLSQALSELARVLKPGGLLAFSTFGPGT  140 (240)
T ss_pred             hc---------------cCHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence            65               46678999999999999999998775543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.61  E-value=1.3e-14  Score=108.63  Aligned_cols=104  Identities=17%  Similarity=0.235  Sum_probs=85.2

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-CcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..+..+++..+. +++++|+++.+++.++++++..+.+++.+..+|+.. .+....+||+|++..
T Consensus        17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~   96 (124)
T TIGR02469        17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG   96 (124)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence            345679999999999999999988554 899999999999999999888877778888888764 222235899999865


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ..                  ....++++.+.+.|+|||.+++..
T Consensus        97 ~~------------------~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        97 SG------------------GLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             cc------------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence            43                  234689999999999999999864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.61  E-value=4.1e-15  Score=125.80  Aligned_cols=101  Identities=23%  Similarity=0.382  Sum_probs=85.9

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .++.+|||+|||+|.++..+++..+. +++|+|+|+.+++.++++.     +++.+..+|+..+. +..+||+|+++.++
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l  103 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ-PPQALDLIFANASL  103 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC-CCCCccEEEEccCh
Confidence            46789999999999999999987544 9999999999999999874     36788889987654 34689999999998


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +++               .+...+++++.++|+|||.+++...
T Consensus       104 ~~~---------------~d~~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683        104 QWL---------------PDHLELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             hhC---------------CCHHHHHHHHHHhcCCCcEEEEECC
Confidence            766               3567899999999999999998643

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.60  E-value=5e-15  Score=117.05  Aligned_cols=107  Identities=25%  Similarity=0.362  Sum_probs=91.5

Q ss_pred             CcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeE-EEEcccCCCc-CCCCceeEEEecceeee
Q 025039           60 SSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVK-VLEADMLDLP-FSNDCFDVVIEKATMEV  137 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~fD~V~~~~~l~~  137 (259)
                      ..|||+|||||..-.+.-..-..+|+++|++++|-+.+.+.++++....+. ++.++..+++ ++++++|+|++..++- 
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC-  156 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC-  156 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe-
Confidence            457999999999988776544449999999999999999999888655666 8899998887 7889999999987773 


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                                    ..+++.+.|+++.++|+|||++++.++...
T Consensus       157 --------------Sve~~~k~L~e~~rlLRpgG~iifiEHva~  186 (252)
T KOG4300|consen  157 --------------SVEDPVKQLNEVRRLLRPGGRIIFIEHVAG  186 (252)
T ss_pred             --------------ccCCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence                          347889999999999999999999987653

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.60  E-value=3.3e-15  Score=111.02  Aligned_cols=113  Identities=25%  Similarity=0.421  Sum_probs=88.8

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCc--CCCCceeEEEeccee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP--FSNDCFDVVIEKATM  135 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l  135 (259)
                      |.+|||+|||+|.++..+++.+..+++++|+++.+++.++.++...+. .++++.++|+.+..  ++.++||+|+++.++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            468999999999999999999833999999999999999999998876 35999999998764  667899999999887


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ......       ..........+++.+.++|+|||.++++.+
T Consensus        81 ~~~~~~-------~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   81 GPRSGD-------KAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             TSBTT-----------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccc-------chhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            432100       001223567899999999999999998754

...

>PRK06922 hypothetical protein; Provisional

Probab=99.60  E-value=6.2e-15  Score=135.92  Aligned_cols=118  Identities=18%  Similarity=0.335  Sum_probs=92.8

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEecce
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKAT  134 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~  134 (259)
                      ++.+|||+|||+|..+..+++..+. +++|+|+|+.|++.|+++....+ .++.++++|+.+++  +++++||+|+++.+
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp~~fedeSFDvVVsn~v  496 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSSFEKESVDTIVYSSI  496 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence            5789999999999999888887655 99999999999999998876544 35788889988776  67789999999988


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+++.-.  ++.....+..+...+++++.++|||||.+++.+.
T Consensus       497 LH~L~syI--p~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        497 LHELFSYI--EYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             HHhhhhhc--ccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            87652100  0000001346788999999999999999999864

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.60  E-value=4.6e-15  Score=121.01  Aligned_cols=115  Identities=18%  Similarity=0.217  Sum_probs=90.2

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEccc-CCCc--CCCCceeEEEecc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM-LDLP--FSNDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~fD~V~~~~  133 (259)
                      ++.+|||+|||+|..+..+++..+. +++++|+|+.+++.+++++...+.+++.++++|+ ..++  +++++||+|+++.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            5789999999999999999887654 8999999999999999999888777799999998 5554  5567899999754


Q ss_pred             eeeeeeeCCCCCCCCCchh--HHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          134 TMEVLFVNSGDPWNPQPET--VTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      +.         +|...++.  ......+++++.++|+|||.+++.+....
T Consensus       120 ~~---------p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~  160 (202)
T PRK00121        120 PD---------PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG  160 (202)
T ss_pred             CC---------CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH
Confidence            32         22211111  11246899999999999999999865443

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.60  E-value=5.9e-15  Score=122.21  Aligned_cols=104  Identities=22%  Similarity=0.363  Sum_probs=88.7

Q ss_pred             CcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           60 SSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      ++|||+|||+|..+..+++..+. +++|+|+|+.+++.+++++...++.. +++...|+...+.+ ++||+|++..++++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~   79 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH   79 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence            37999999999999999887644 89999999999999999988777644 88999998665544 58999999888876


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +               .+...+++++.++|+|||.+++.++.
T Consensus        80 ~---------------~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       80 I---------------KDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             C---------------CCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence            6               45679999999999999999998753

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.59  E-value=1.7e-14  Score=127.20  Aligned_cols=117  Identities=18%  Similarity=0.243  Sum_probs=91.5

Q ss_pred             hhcccCCC--CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCC---CCeEEEEcccCCCcCCCC
Q 025039           51 LVQPHIKP--NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY---KEVKVLEADMLDLPFSND  124 (259)
Q Consensus        51 ~l~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~  124 (259)
                      ++...++.  +.+|||+|||+|.+++.+++.++. +|+++|+|+.+++.++++++.++.   .++++...|..+. .+..
T Consensus       219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~  297 (378)
T PRK15001        219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPF  297 (378)
T ss_pred             HHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCC
Confidence            34444432  468999999999999999998776 999999999999999999877653   2578888887652 2345


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +||+|+|+++||....          -......+++..+.++|+|||.++++..
T Consensus       298 ~fDlIlsNPPfh~~~~----------~~~~ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        298 RFNAVLCNPPFHQQHA----------LTDNVAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             CEEEEEECcCcccCcc----------CCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence            8999999999875311          0223457899999999999999999853

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.59  E-value=5.1e-15  Score=126.20  Aligned_cols=140  Identities=23%  Similarity=0.366  Sum_probs=96.6

Q ss_pred             CCCCCCCCCCccchhhhcCCCCcccc---cccc-hHHHHhhcccCC-CCCcEEEEcCCCCcchHHHHhcCC----CeEEE
Q 025039           16 GPPTTSAYLDPHYWDERFSDEEHYEW---LKDY-SHFRHLVQPHIK-PNSSVLELGCGNSRLSEGLYNDGI----TAITC   86 (259)
Q Consensus        16 ~~~~~~~~~~~~~w~~~~~~~~~~~w---~~~~-~~~~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~----~~v~~   86 (259)
                      .+..........++.+.+.....+..   +... ..+...+...+. ++.+|||+|||+|..+..+++..+    ..++|
T Consensus        38 l~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~g  117 (272)
T PRK11088         38 LPVQHKRSKDPGDNKEMMQARRAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFG  117 (272)
T ss_pred             ccccccCCCCCCcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEE
Confidence            34333444445566666654222211   1111 223233443333 457899999999999998887633    16899


Q ss_pred             eeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhc
Q 025039           87 IDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRV  166 (259)
Q Consensus        87 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (259)
                      +|+|+.+++.|+++.     +++.+.++|+.++++++++||+|++...                      ...++++.++
T Consensus       118 iD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~~~----------------------~~~~~e~~rv  170 (272)
T PRK11088        118 LDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRIYA----------------------PCKAEELARV  170 (272)
T ss_pred             ECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEecC----------------------CCCHHHHHhh
Confidence            999999999998763     4688999999998888889999997421                      1245788999


Q ss_pred             ccCCcEEEEEecCCcc
Q 025039          167 LKPDGLFISVSFGQPH  182 (259)
Q Consensus       167 LkpgG~l~~~~~~~~~  182 (259)
                      |||||+++++.++..+
T Consensus       171 LkpgG~li~~~p~~~~  186 (272)
T PRK11088        171 VKPGGIVITVTPGPRH  186 (272)
T ss_pred             ccCCCEEEEEeCCCcc
Confidence            9999999999877654

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.59  E-value=5.7e-15  Score=125.13  Aligned_cols=106  Identities=17%  Similarity=0.240  Sum_probs=85.0

Q ss_pred             CCCcEEEEcCCCCc----chHHHHhcCC-----C-eEEEeeCCHHHHHHHHHHHhh----cCC-----------------
Q 025039           58 PNSSVLELGCGNSR----LSEGLYNDGI-----T-AITCIDLSAVAVEKMQERLLL----KGY-----------------  106 (259)
Q Consensus        58 ~~~~vLDiGcG~G~----~~~~l~~~~~-----~-~v~~vD~s~~~~~~a~~~~~~----~~~-----------------  106 (259)
                      ++.+|||+|||+|.    +++.+++.++     . +|+|+|+|+.|++.|++..-.    .++                 
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999997    4555655432     3 899999999999999985310    011                 


Q ss_pred             ------CCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          107 ------KEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       107 ------~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                            ..+.+.++|+.+.+.+.++||+|+|.++++++             +.+...++++++.++|+|||++++.
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-------------~~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-------------DEPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC-------------CHHHHHHHHHHHHHHhCCCeEEEEE
Confidence                  25889999998877667899999999999887             5567889999999999999999975

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.58  E-value=3.4e-14  Score=113.74  Aligned_cols=120  Identities=20%  Similarity=0.291  Sum_probs=91.6

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      ++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+. ++.+..+|+.+..  .++||+|+++.+++.
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~   94 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV--RGKFDVILFNPPYLP   94 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc--CCcccEEEECCCCCC
Confidence            467899999999999999999988 999999999999999999887765 6888889987643  358999999988754


Q ss_pred             eeeCCC-CCC-----CCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          138 LFVNSG-DPW-----NPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       138 ~~~~~~-~~~-----~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      .-.... ..|     .....+......+++++.++|+|||.++++.....
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~  144 (179)
T TIGR00537        95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN  144 (179)
T ss_pred             CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence            411100 001     00111233467899999999999999999876543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.58  E-value=1.2e-14  Score=126.32  Aligned_cols=104  Identities=26%  Similarity=0.334  Sum_probs=87.8

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .++.+|||+|||+|..+..+++... .+++++|+|+.|++.++++...   .+++++.+|+.++++++++||+|+++.++
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp~~~~sFDvVIs~~~L  188 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLPFPTDYADRYVSAGSI  188 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence            4578999999999999988887643 3899999999999999987642   35788999998888878899999999888


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +++               .+...+++++.++|+|||.+++...
T Consensus       189 ~~~---------------~d~~~~L~e~~rvLkPGG~LvIi~~  216 (340)
T PLN02490        189 EYW---------------PDPQRGIKEAYRVLKIGGKACLIGP  216 (340)
T ss_pred             hhC---------------CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            765               3456799999999999999988754

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.57  E-value=2e-14  Score=116.29  Aligned_cols=167  Identities=20%  Similarity=0.369  Sum_probs=114.7

Q ss_pred             CCccchhhhcCCCCc-c----cccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCC---eEEEeeCCHHHHH
Q 025039           24 LDPHYWDERFSDEEH-Y----EWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGIT---AITCIDLSAVAVE   95 (259)
Q Consensus        24 ~~~~~w~~~~~~~~~-~----~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~~vD~s~~~~~   95 (259)
                      ..+.|||..|..... +    .|..  ..+..++...-++..+|||+|||.|.....+.+..++   .++++|+|+.+++
T Consensus        34 ~~~k~wD~fy~~~~~rFfkdR~wL~--~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~  111 (264)
T KOG2361|consen   34 EASKYWDTFYKIHENRFFKDRNWLL--REFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIE  111 (264)
T ss_pred             chhhhhhhhhhhccccccchhHHHH--HhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHH
Confidence            347899999976322 1    2222  1222333222223348999999999999988887554   8999999999999


Q ss_pred             HHHHHHhhcCCCCeEEEEcccCC----CcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCc
Q 025039           96 KMQERLLLKGYKEVKVLEADMLD----LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG  171 (259)
Q Consensus        96 ~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  171 (259)
                      ..+++..... ..+...+.|+..    -+...+++|+|++..+|.++             +++....+++++.++|||||
T Consensus       112 ~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi-------------~pek~~~a~~nl~~llKPGG  177 (264)
T KOG2361|consen  112 LVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI-------------HPEKMQSVIKNLRTLLKPGG  177 (264)
T ss_pred             HHHhccccch-hhhcccceeccchhccCCCCcCccceEEEEEEEecc-------------ChHHHHHHHHHHHHHhCCCc
Confidence            9998754332 234444555543    23556899999999999888             66888999999999999999


Q ss_pred             EEEEEecCCccccccccCCCCCCcEEEEEEeCCeEE
Q 025039          172 LFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFH  207 (259)
Q Consensus       172 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (259)
                      .+++.+++.......-+... ..........+++..
T Consensus       178 ~llfrDYg~~DlaqlRF~~~-~~i~~nfYVRgDGT~  212 (264)
T KOG2361|consen  178 SLLFRDYGRYDLAQLRFKKG-QCISENFYVRGDGTR  212 (264)
T ss_pred             EEEEeecccchHHHHhccCC-ceeecceEEccCCce
Confidence            99999999876654444422 233333333445443

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.57  E-value=2.8e-14  Score=120.01  Aligned_cols=135  Identities=20%  Similarity=0.282  Sum_probs=96.1

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .+.+|||+|||+|..+..+++..+. +++++|+++.+++.+++++...+++++.+.++|+.+ .++.++||+|+++.++.
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~  165 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI  165 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence            4568999999999999999987555 999999999999999999988887779999999876 34567899999988764


Q ss_pred             eeee-----C------CCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec-CCccccccccCCCCC
Q 025039          137 VLFV-----N------SGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF-GQPHFRRPFFNAPQF  193 (259)
Q Consensus       137 ~~~~-----~------~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~~~  193 (259)
                      ..-.     .      +...+.....+......+++.+.++|+|||.+++... .+......++...++
T Consensus       166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf  234 (251)
T TIGR03534       166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGF  234 (251)
T ss_pred             chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCC
Confidence            2100     0      0000001112234456889999999999999998532 222333344444444

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.56  E-value=2e-14  Score=123.03  Aligned_cols=137  Identities=13%  Similarity=0.209  Sum_probs=98.3

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      ++.+|||+|||+|.++..++...+. +++++|+|+.+++.|++++..+++. ++.++++|+.+. ++.++||+|++++++
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy  199 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPPY  199 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCCC
Confidence            4578999999999999999988655 9999999999999999999988875 489999998652 344579999999775


Q ss_pred             eeeee----------CCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCc
Q 025039          136 EVLFV----------NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTW  195 (259)
Q Consensus       136 ~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  195 (259)
                      ...-.          .+...+.....+......++..+.++|+|||++++...........++...++.|
T Consensus       200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~~v~~~~~~~~~~~  269 (284)
T TIGR03533       200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALEEAYPDVPFTW  269 (284)
T ss_pred             CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCCce
Confidence            31100          0000011122345567889999999999999998754332223334455555555

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.56  E-value=6.6e-14  Score=112.82  Aligned_cols=103  Identities=13%  Similarity=0.179  Sum_probs=84.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|..+..+++.++. +++++|+++.+++.+++++...++.++++..+|... .+ .++||+|++.+.
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~-~~~~D~v~~~~~  106 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-EL-PGKADAIFIGGS  106 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hc-CcCCCEEEECCC
Confidence            457789999999999999999988765 999999999999999999888777678998888743 33 357999998654


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .+                  ....+++.+.+.|+|||++++...
T Consensus       107 ~~------------------~~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287        107 GG------------------NLTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             cc------------------CHHHHHHHHHHhcCCCeEEEEEEe
Confidence            32                  235688999999999999988653

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.56  E-value=5.4e-14  Score=120.76  Aligned_cols=111  Identities=19%  Similarity=0.287  Sum_probs=87.6

Q ss_pred             HhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeE
Q 025039           50 HLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDV  128 (259)
Q Consensus        50 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~  128 (259)
                      ..+.....++.+|||+|||+|.+++.+++.|..+++++|+++.+++.|++++..+++.. +.+...+...  ...++||+
T Consensus       151 ~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDl  228 (288)
T TIGR00406       151 EWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADV  228 (288)
T ss_pred             HHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceE
Confidence            34444456789999999999999999988876699999999999999999998887654 5555555322  23468999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      |+++...                  .....++.++.++|+|||.+++..+..
T Consensus       229 Vvan~~~------------------~~l~~ll~~~~~~LkpgG~li~sgi~~  262 (288)
T TIGR00406       229 IVANILA------------------EVIKELYPQFSRLVKPGGWLILSGILE  262 (288)
T ss_pred             EEEecCH------------------HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence            9986532                  345678999999999999999987643

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=6.5e-14  Score=119.42  Aligned_cols=140  Identities=19%  Similarity=0.290  Sum_probs=102.5

Q ss_pred             cEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeee
Q 025039           61 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF  139 (259)
Q Consensus        61 ~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~  139 (259)
                      +|||+|||+|.+++.++..++. +|+++|+|+.+++.|++|+..+++.++.++.+|+++-. . ++||+|++|+++=---
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~-~-~~fDlIVsNPPYip~~  190 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL-R-GKFDLIVSNPPYIPAE  190 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc-C-CceeEEEeCCCCCCCc
Confidence            7999999999999999999887 99999999999999999999998756666777876632 2 3899999998761110


Q ss_pred             -eCC------CCC---CCCCchhHHHHHHHHHHHHhcccCCcEEEEE-ecCCccccccccCCCC-CCcEEEEEEe
Q 025039          140 -VNS------GDP---WNPQPETVTKVMAMLEGVHRVLKPDGLFISV-SFGQPHFRRPFFNAPQ-FTWSVEWITF  202 (259)
Q Consensus       140 -~~~------~~~---~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~  202 (259)
                       ...      ..|   ......+.....+++..+.+.|+|||.+++. .+.+......++...+ +.+......+
T Consensus       191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d~  265 (280)
T COG2890         191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKDL  265 (280)
T ss_pred             ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEecC
Confidence             000      001   1223466778899999999999999988874 3456555556666666 3333334333

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.56  E-value=2.3e-14  Score=116.13  Aligned_cols=114  Identities=21%  Similarity=0.307  Sum_probs=89.2

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEEecc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~  133 (259)
                      ...+|||+|||+|..+..+++..+. .++|+|+++.+++.|++++...++.++.++++|+.++.   ++++++|.|+++.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            4568999999999999999998766 89999999999999999998888888999999997643   3456789888653


Q ss_pred             eeeeeeeCCCCCCCCCchhHH--HHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          134 TMEVLFVNSGDPWNPQPETVT--KVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +         +||.+..+...  ....+++++.++|||||.+++.+...
T Consensus        96 p---------dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~  135 (194)
T TIGR00091        96 P---------DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE  135 (194)
T ss_pred             C---------CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence            2         34432211111  12579999999999999999876544

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK08317 hypothetical protein; Provisional

Probab=99.56  E-value=4.2e-14  Score=117.75  Aligned_cols=108  Identities=25%  Similarity=0.384  Sum_probs=90.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..+..+++.. +. +++++|+++.+++.++++... ...++.+...|+...+++.++||+|++..
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~v~~~~   95 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFPDGSFDAVRSDR   95 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCCCCCceEEEEec
Confidence            4577899999999999999998875 33 899999999999999987332 22468899999888777778999999998


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +++++               .+...+++++.++|+|||.+++.++.
T Consensus        96 ~~~~~---------------~~~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         96 VLQHL---------------EDPARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             hhhcc---------------CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence            88766               45678999999999999999987653

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.55  E-value=6.2e-14  Score=115.78  Aligned_cols=133  Identities=18%  Similarity=0.272  Sum_probs=97.6

Q ss_pred             ccchhhhcCCCCccccccc-----c----hHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHH
Q 025039           26 PHYWDERFSDEEHYEWLKD-----Y----SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEK   96 (259)
Q Consensus        26 ~~~w~~~~~~~~~~~w~~~-----~----~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~   96 (259)
                      ...|+.+|...+...+...     .    ..+...+.....++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~   92 (219)
T TIGR02021        14 FQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQM   92 (219)
T ss_pred             HHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            4568888876433333221     0    112223222134678999999999999999998876 99999999999999


Q ss_pred             HHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039           97 MQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus        97 a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                      |++++...+. .++.+.++|+...+   ++||+|++..++.++             ...+...++.++.+++++++++.+
T Consensus        93 a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~-------------~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021        93 ARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHY-------------PASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             HHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhC-------------CHHHHHHHHHHHHHHhCCCEEEEE
Confidence            9999877665 35889999987754   689999998877655             335677899999999987666554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK14967 putative methyltransferase; Provisional

Probab=99.55  E-value=8.2e-14  Score=115.41  Aligned_cols=122  Identities=23%  Similarity=0.353  Sum_probs=92.0

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.++.+|||+|||+|.++..++..+..+++++|+++.+++.+++++...+. ++.++++|+.+. +++++||+|+++.++
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~-~~~~~fD~Vi~npPy  111 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA-VEFRPFDVVVSNPPY  111 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh-ccCCCeeEEEECCCC
Confidence            456789999999999999999887655899999999999999999887765 578888888763 345789999998765


Q ss_pred             eeeeeC------CCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          136 EVLFVN------SGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       136 ~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ......      ....|....+.......+++++.++|+|||+++++...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~  161 (223)
T PRK14967        112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE  161 (223)
T ss_pred             CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            322100      00112222234445678999999999999999986443

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.55  E-value=5.3e-14  Score=117.28  Aligned_cols=108  Identities=27%  Similarity=0.442  Sum_probs=91.6

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecce
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      ++.+|||+|||+|..+..++..++  .+++++|+++.+++.+++++...+.. ++.+..+|+.+.+.+.+.||+|++..+
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~  130 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG  130 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence            578999999999999999999875  39999999999999999988765433 488899999887766678999998877


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +++.               .+...+++++.++|+|||.++++++..
T Consensus       131 l~~~---------------~~~~~~l~~~~~~L~~gG~li~~~~~~  161 (239)
T PRK00216        131 LRNV---------------PDIDKALREMYRVLKPGGRLVILEFSK  161 (239)
T ss_pred             cccC---------------CCHHHHHHHHHHhccCCcEEEEEEecC
Confidence            7655               456789999999999999999887654

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.55  E-value=4.5e-14  Score=125.58  Aligned_cols=107  Identities=31%  Similarity=0.449  Sum_probs=88.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.++.+|||+|||+|.++..+++....+|+|+|+|+++++.+++++.  +. .+++...|..++   +++||.|++..++
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l---~~~fD~Ivs~~~~  238 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL---NGQFDRIVSVGMF  238 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc---CCCCCEEEEeCch
Confidence            46788999999999999999987632399999999999999999875  32 477788887664   3689999999888


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      +++             +..+...+++++.++|||||.+++.++..+
T Consensus       239 ehv-------------g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~  271 (383)
T PRK11705        239 EHV-------------GPKNYRTYFEVVRRCLKPDGLFLLHTIGSN  271 (383)
T ss_pred             hhC-------------ChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence            776             445678899999999999999999876543

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.55  E-value=1.3e-13  Score=120.58  Aligned_cols=121  Identities=19%  Similarity=0.201  Sum_probs=97.6

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .++++.+|||+|||+|.+++.++..+. +++|+|+++.|++.++++++..+++++.+.++|+.+++..+++||+|+++++
T Consensus       179 ~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP  257 (329)
T TIGR01177       179 RVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP  257 (329)
T ss_pred             CCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence            356788999999999999998887776 8999999999999999999988887788999999998877789999999887


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      +.......+      .........+++++.++|+|||.+++.......
T Consensus       258 yg~~~~~~~------~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~  299 (329)
T TIGR01177       258 YGRSTTAAG------DGLESLYERSLEEFHEVLKSEGWIVYAVPTRID  299 (329)
T ss_pred             CcCcccccC------CchHHHHHHHHHHHHHHccCCcEEEEEEcCCCC
Confidence            643211000      012234688999999999999999988766543

This family is found exclusively in the Archaea.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=6.8e-14  Score=117.90  Aligned_cols=111  Identities=24%  Similarity=0.378  Sum_probs=90.7

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      +.+|||+|||.|.+++.+++..+. +++.+|++..+++.+++++..+++.+..+...|..+ +..+ +||+|+||++||.
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~IisNPPfh~  236 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDLIISNPPFHA  236 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccEEEeCCCccC
Confidence            459999999999999999999887 999999999999999999999988666666777766 3333 8999999999974


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      =..          -...-..+++..+.+.|++||.|.++..+..
T Consensus       237 G~~----------v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l  270 (300)
T COG2813         237 GKA----------VVHSLAQEIIAAAARHLKPGGELWIVANRHL  270 (300)
T ss_pred             Ccc----------hhHHHHHHHHHHHHHhhccCCEEEEEEcCCC
Confidence            310          0112345899999999999999999977543

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.54  E-value=1.1e-14  Score=115.85  Aligned_cols=101  Identities=25%  Similarity=0.313  Sum_probs=89.3

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .+..+|.|+|||+|..+..|+++.+. .++|+|.|++|++.|++++     ++++|..+|+.+.. +...+|+++++.+|
T Consensus        29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~-p~~~~dllfaNAvl  102 (257)
T COG4106          29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWK-PEQPTDLLFANAVL  102 (257)
T ss_pred             cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcC-CCCccchhhhhhhh
Confidence            35689999999999999999999877 9999999999999998875     58999999998876 45689999999999


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +.+               .+-.+++.++...|.|||++-+-.+
T Consensus       103 qWl---------------pdH~~ll~rL~~~L~Pgg~LAVQmP  130 (257)
T COG4106         103 QWL---------------PDHPELLPRLVSQLAPGGVLAVQMP  130 (257)
T ss_pred             hhc---------------cccHHHHHHHHHhhCCCceEEEECC
Confidence            877               5667899999999999999998654

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.54  E-value=9.5e-14  Score=116.96  Aligned_cols=105  Identities=23%  Similarity=0.398  Sum_probs=81.4

Q ss_pred             HhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeE
Q 025039           50 HLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDV  128 (259)
Q Consensus        50 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~  128 (259)
                      ..+.....++.+|||+|||+|.+++.+++.|..+++++|+++.+++.|++++..+++. .+.+..+        +.+||+
T Consensus       111 ~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~--------~~~fD~  182 (250)
T PRK00517        111 EALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG--------DLKADV  182 (250)
T ss_pred             HHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------CCCcCE
Confidence            3344445678999999999999999888888757999999999999999999877752 2333222        127999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      |+++...                  .....++.++.++|+|||.+++..+..
T Consensus       183 Vvani~~------------------~~~~~l~~~~~~~LkpgG~lilsgi~~  216 (250)
T PRK00517        183 IVANILA------------------NPLLELAPDLARLLKPGGRLILSGILE  216 (250)
T ss_pred             EEEcCcH------------------HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence            9986432                  345678999999999999999986643

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=5.3e-14  Score=119.13  Aligned_cols=114  Identities=25%  Similarity=0.422  Sum_probs=91.3

Q ss_pred             hHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCC
Q 025039           46 SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSND  124 (259)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~  124 (259)
                      ......+.....++.+|||+|||+|.+++..++.|..+++|+|++|.+++.+++|+..++++. +.....+....+ ..+
T Consensus       150 ~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~  228 (300)
T COG2264         150 SLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENG  228 (300)
T ss_pred             HHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccC
Confidence            345566777778999999999999999999999999889999999999999999999998754 223333333322 336


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .||+|++|=..                  +-+..+...+.++++|||++++...
T Consensus       229 ~~DvIVANILA------------------~vl~~La~~~~~~lkpgg~lIlSGI  264 (300)
T COG2264         229 PFDVIVANILA------------------EVLVELAPDIKRLLKPGGRLILSGI  264 (300)
T ss_pred             cccEEEehhhH------------------HHHHHHHHHHHHHcCCCceEEEEee
Confidence            89999987422                  3456899999999999999999865

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.54  E-value=9e-14  Score=121.70  Aligned_cols=108  Identities=24%  Similarity=0.361  Sum_probs=89.2

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      ..+|||+|||+|.++..+++.++. +++++|+++.+++.++++++.+++ ...+...|+...  ..+.||+|+++++||.
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~--~~~~fDlIvsNPPFH~  273 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD--IKGRFDMIISNPPFHD  273 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc--cCCCccEEEECCCccC
Confidence            468999999999999999998765 899999999999999999988876 356777777552  2468999999999875


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ...          .......+++..+.++|+|||.++++...
T Consensus       274 g~~----------~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        274 GIQ----------TSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             Ccc----------ccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            311          13456789999999999999999998654

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.54  E-value=1.3e-13  Score=108.46  Aligned_cols=107  Identities=17%  Similarity=0.261  Sum_probs=91.5

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      ..+.++.+++|+|||||..++.++..++. +++++|-++++++..++|++..+++++.++.+++-+.-....++|.|+..
T Consensus        30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIG  109 (187)
T COG2242          30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIG  109 (187)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEEC
Confidence            34568899999999999999999988887 99999999999999999999999999999999986632122279999986


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +.                   .....+++.+...|+|||++++-...
T Consensus       110 Gg-------------------~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242         110 GG-------------------GNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             CC-------------------CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence            64                   35678999999999999999986543

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.54  E-value=1e-13  Score=114.23  Aligned_cols=101  Identities=23%  Similarity=0.200  Sum_probs=83.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..+..+++....  +|+++|+++.+++.|++++...++++++++++|+.+......+||+|++..
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~  154 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTA  154 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcC
Confidence            457899999999999999999887542  699999999999999999999988789999999876543346899999765


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ...                     .+.+.+.+.|+|||++++..
T Consensus       155 ~~~---------------------~~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       155 AGP---------------------KIPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             Ccc---------------------cccHHHHHhcCcCcEEEEEE
Confidence            432                     23455788999999999853

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.54  E-value=1.5e-13  Score=117.80  Aligned_cols=129  Identities=14%  Similarity=0.222  Sum_probs=95.8

Q ss_pred             CcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           60 SSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      .+|||+|||+|.+++.++...+. +++++|+|+.+++.|++++..+++.+ +.+.++|+.+ +++..+||+|++++++-.
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~  194 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID  194 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence            68999999999999999988764 99999999999999999998888754 9999999876 333447999999876521


Q ss_pred             ee----------eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe-cCCccccccccC
Q 025039          138 LF----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS-FGQPHFRRPFFN  189 (259)
Q Consensus       138 ~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~  189 (259)
                      .-          ..+...+...+++......++..+.++|+|||++++.. ..+......++.
T Consensus       195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~  257 (284)
T TIGR00536       195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLR  257 (284)
T ss_pred             cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHH
Confidence            10          00001112234556678899999999999999998743 334443334443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.53  E-value=8.5e-14  Score=120.72  Aligned_cols=108  Identities=13%  Similarity=0.190  Sum_probs=91.4

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..++.+++..+. +++++|. +.+++.+++++...++. +++++.+|+.+.+++  .+|+|++..
T Consensus       147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~  223 (306)
T TIGR02716       147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCR  223 (306)
T ss_pred             CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--CCCEEEeEh
Confidence            346689999999999999999999876 8999997 78999999999888775 489999999875544  369999888


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++|++             +.+....+++++.++|+|||++++.++.
T Consensus       224 ~lh~~-------------~~~~~~~il~~~~~~L~pgG~l~i~d~~  256 (306)
T TIGR02716       224 ILYSA-------------NEQLSTIMCKKAFDAMRSGGRLLILDMV  256 (306)
T ss_pred             hhhcC-------------ChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            77765             4456788999999999999999998753

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.53  E-value=8.8e-14  Score=114.27  Aligned_cols=100  Identities=21%  Similarity=0.195  Sum_probs=82.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..+..+++.. .. +|+++|+++++++.++++++..++.+++++++|......+.+.||+|++..
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~  153 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA  153 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence            4578999999999999999888773 32 899999999999999999998888789999999877544567899999865


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ....                     +...+.+.|+|||++++.
T Consensus       154 ~~~~---------------------~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        154 AGPD---------------------IPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             Cccc---------------------chHHHHHhhCCCcEEEEE
Confidence            5432                     234567789999999885

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.53  E-value=1.6e-13  Score=112.16  Aligned_cols=101  Identities=18%  Similarity=0.191  Sum_probs=81.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEec
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      +.++.+|||+|||+|..+..+++...  .+|+++|+++.+++.+++++...++.+ +++..+|+.+......+||+|++.
T Consensus        70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~  149 (205)
T PRK13944         70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT  149 (205)
T ss_pred             CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence            35678999999999999998887632  289999999999999999998887754 899999987744345689999987


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .++.++                     .+++.+.|+|||++++..
T Consensus       150 ~~~~~~---------------------~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        150 AAASTI---------------------PSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             cCcchh---------------------hHHHHHhcCcCcEEEEEE
Confidence            765433                     246788999999998753

>PRK06202 hypothetical protein; Provisional

Probab=99.53  E-value=1.2e-13  Score=114.98  Aligned_cols=107  Identities=22%  Similarity=0.302  Sum_probs=83.4

Q ss_pred             CCCCcEEEEcCCCCcchHHHHh----cCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEe
Q 025039           57 KPNSSVLELGCGNSRLSEGLYN----DGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIE  131 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~----~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  131 (259)
                      .++.+|||+|||+|.++..+++    .|+. +++|+|+|+.|++.|+++....   ++.+...+...++.++++||+|++
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~~  135 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVTS  135 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEEE
Confidence            4568999999999999888875    3554 8999999999999999876433   356666666555556679999999


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      +.+++|+             ..++..++++++.++++  |.+++.++..+
T Consensus       136 ~~~lhh~-------------~d~~~~~~l~~~~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        136 NHFLHHL-------------DDAEVVRLLADSAALAR--RLVLHNDLIRS  170 (232)
T ss_pred             CCeeecC-------------ChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence            9999987             33456789999999998  66666665543

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.53  E-value=1.3e-13  Score=113.75  Aligned_cols=106  Identities=25%  Similarity=0.433  Sum_probs=90.5

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      ++.+|||+|||+|..+..+++.++.  +++++|+++.+++.++++..  ...++.+..+|+.+.+++.++||+|++...+
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~  116 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFGL  116 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence            6789999999999999999988764  89999999999999999875  2235889999998877666789999998777


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++.               .+...+++++.++|+|||.+++.++..
T Consensus       117 ~~~---------------~~~~~~l~~~~~~L~~gG~l~~~~~~~  146 (223)
T TIGR01934       117 RNV---------------TDIQKALREMYRVLKPGGRLVILEFSK  146 (223)
T ss_pred             CCc---------------ccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            654               466789999999999999999987654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.52  E-value=6.9e-14  Score=119.40  Aligned_cols=112  Identities=25%  Similarity=0.420  Sum_probs=87.1

Q ss_pred             HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCce
Q 025039           47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCF  126 (259)
Q Consensus        47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  126 (259)
                      ....++.....++.+|||+|||+|.+++..++.|..+|+++|+++.+++.|++|+..+++.. .+......+.  ..++|
T Consensus       150 lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~--~~~~~  226 (295)
T PF06325_consen  150 LCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDL--VEGKF  226 (295)
T ss_dssp             HHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCT--CCS-E
T ss_pred             HHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEeccc--ccccC
Confidence            34456666677889999999999999999999998899999999999999999999999866 3322222222  24789


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |+|++|-..                  ..+..++..+.++|+|||.+++...-
T Consensus       227 dlvvANI~~------------------~vL~~l~~~~~~~l~~~G~lIlSGIl  261 (295)
T PF06325_consen  227 DLVVANILA------------------DVLLELAPDIASLLKPGGYLILSGIL  261 (295)
T ss_dssp             EEEEEES-H------------------HHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred             CEEEECCCH------------------HHHHHHHHHHHHhhCCCCEEEEcccc
Confidence            999987433                  45578889999999999999997653

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.52  E-value=9.7e-14  Score=116.86  Aligned_cols=122  Identities=21%  Similarity=0.318  Sum_probs=91.0

Q ss_pred             cccccc--hHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEccc
Q 025039           40 EWLKDY--SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADM  116 (259)
Q Consensus        40 ~w~~~~--~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~  116 (259)
                      +|...+  .++...+...  .|++|||||||+|..+..++.+|+..|+|+|+++...-..+-.....+.+. +..+...+
T Consensus        97 EWrSd~KW~rl~p~l~~L--~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv  174 (315)
T PF08003_consen   97 EWRSDWKWDRLLPHLPDL--KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV  174 (315)
T ss_pred             cccccchHHHHHhhhCCc--CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch
Confidence            465543  3344444322  688999999999999999999999899999999887766443323333222 33443456


Q ss_pred             CCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          117 LDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       117 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .+++. .+.||+|+|.+++.|.               .++...|.+++..|+|||.+++-+.-
T Consensus       175 E~Lp~-~~~FDtVF~MGVLYHr---------------r~Pl~~L~~Lk~~L~~gGeLvLETlv  221 (315)
T PF08003_consen  175 EDLPN-LGAFDTVFSMGVLYHR---------------RSPLDHLKQLKDSLRPGGELVLETLV  221 (315)
T ss_pred             hhccc-cCCcCEEEEeeehhcc---------------CCHHHHHHHHHHhhCCCCEEEEEEee
Confidence            66775 6789999999999876               67789999999999999999986653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.51  E-value=7.7e-14  Score=115.23  Aligned_cols=120  Identities=23%  Similarity=0.342  Sum_probs=92.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCc--CCCCceeEEEecc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP--FSNDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--~~~~~fD~V~~~~  133 (259)
                      ...+|||+|||+|.+++.++++.. .++++||+++.+.+.|+++++.+++.. ++++++|+..+.  ....+||+|+||+
T Consensus        44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP  123 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP  123 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence            478999999999999999999955 499999999999999999999988765 999999998754  3345799999999


Q ss_pred             eeeeeeeC-CCCCCCC--CchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          134 TMEVLFVN-SGDPWNP--QPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       134 ~l~~~~~~-~~~~~~~--~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ++...-.. ..++...  ..+..-+..++++.+.++|||||.+.++-
T Consensus       124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~  170 (248)
T COG4123         124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH  170 (248)
T ss_pred             CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence            98544221 0001100  01112246789999999999999999874

>TIGR03438 probable methyltransferase

Probab=99.51  E-value=2.3e-13  Score=117.65  Aligned_cols=138  Identities=20%  Similarity=0.209  Sum_probs=97.0

Q ss_pred             ccchhhhcCCCCcccccccchHHH---HhhcccCCCCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHH
Q 025039           26 PHYWDERFSDEEHYEWLKDYSHFR---HLVQPHIKPNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQER  100 (259)
Q Consensus        26 ~~~w~~~~~~~~~~~w~~~~~~~~---~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~  100 (259)
                      .+-|++.+..+..+.+..+...+.   ..+...++++.+|||+|||+|..+..+++...  .+++++|+|++|++.++++
T Consensus        28 ~~lf~~i~~~peYy~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~  107 (301)
T TIGR03438        28 SELFEQICELPEYYPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAA  107 (301)
T ss_pred             HHHHHHHHCCCccccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHH
Confidence            567888877655544333322222   23333455778999999999999999998853  3899999999999999998


Q ss_pred             HhhcCCC--CeEEEEcccCC-CcCCCC----ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEE
Q 025039          101 LLLKGYK--EVKVLEADMLD-LPFSND----CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF  173 (259)
Q Consensus       101 ~~~~~~~--~v~~~~~d~~~-~~~~~~----~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  173 (259)
                      +.... +  ++.++++|+.+ ++....    ...++++..+++++             ...+..++|++++++|+|||.+
T Consensus       108 l~~~~-p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~-------------~~~e~~~~L~~i~~~L~pgG~~  173 (301)
T TIGR03438       108 LAADY-PQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNF-------------TPEEAVAFLRRIRQLLGPGGGL  173 (301)
T ss_pred             HHhhC-CCceEEEEEEcccchhhhhcccccCCeEEEEecccccCC-------------CHHHHHHHHHHHHHhcCCCCEE
Confidence            76532 2  36678899876 333222    22344444555554             4577889999999999999999


Q ss_pred             EEEe
Q 025039          174 ISVS  177 (259)
Q Consensus       174 ~~~~  177 (259)
                      ++..
T Consensus       174 lig~  177 (301)
T TIGR03438       174 LIGV  177 (301)
T ss_pred             EEec
Confidence            9743

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.51  E-value=1.9e-13  Score=125.70  Aligned_cols=144  Identities=15%  Similarity=0.229  Sum_probs=101.1

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      +.+|||+|||+|.+++.++...+. +++++|+|+.+++.|++++...++. ++.+..+|+.+. .+.++||+|++++++-
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi  217 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPPYI  217 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCCCC
Confidence            468999999999999998876544 9999999999999999999888764 488999998652 2346899999998753


Q ss_pred             eeee-----------CCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE-ecCCccccccccCCCCCCcEEEEEEeC
Q 025039          137 VLFV-----------NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV-SFGQPHFRRPFFNAPQFTWSVEWITFG  203 (259)
Q Consensus       137 ~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (259)
                      ..-.           .+...+.....+......+++.+.++|+|||.+++. .+++......++...++.....+.++.
T Consensus       218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~D~~  296 (506)
T PRK01544        218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYKDLQ  296 (506)
T ss_pred             CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEecCC
Confidence            2110           011112234456667788999999999999999874 233444444455544444333344443

>PLN03075 nicotianamine synthase; Provisional

Probab=99.51  E-value=1.3e-13  Score=117.06  Aligned_cols=106  Identities=18%  Similarity=0.191  Sum_probs=84.7

Q ss_pred             CCCcEEEEcCCCCcch-HHHH-hcCCC-eEEEeeCCHHHHHHHHHHHhh-cCCCC-eEEEEcccCCCcCCCCceeEEEec
Q 025039           58 PNSSVLELGCGNSRLS-EGLY-NDGIT-AITCIDLSAVAVEKMQERLLL-KGYKE-VKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~-~~l~-~~~~~-~v~~vD~s~~~~~~a~~~~~~-~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      ++.+|+|+|||.|.++ +.++ ...++ +++++|+++++++.|++.+.. .++.+ ++|..+|+.+.....+.||+|++.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            6789999999987443 3333 34555 899999999999999999854 56654 999999998754334689999998


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                       +++++             ...+..++++.+.+.|+|||.+++-.
T Consensus       203 -ALi~~-------------dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        203 -ALVGM-------------DKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             -ccccc-------------ccccHHHHHHHHHHhcCCCcEEEEec
Confidence             66554             34678899999999999999999875

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.51  E-value=1.6e-13  Score=118.69  Aligned_cols=117  Identities=14%  Similarity=0.214  Sum_probs=89.9

Q ss_pred             CcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           60 SSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      .+|||+|||+|.++..++...+. +++++|+|+.+++.|++++..+++. ++.++++|+.+. ++.++||+|++++++-.
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~  213 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD  213 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence            68999999999999999988655 9999999999999999999988875 499999998652 23458999999976521


Q ss_pred             ee----------eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          138 LF----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       138 ~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .-          ..+...+.....+......+++.+.++|+|||.+++..
T Consensus       214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~  263 (307)
T PRK11805        214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV  263 (307)
T ss_pred             ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            10          00111111223445667889999999999999999853

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.50  E-value=2.1e-13  Score=119.89  Aligned_cols=112  Identities=18%  Similarity=0.284  Sum_probs=92.0

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC--cCCCCceeEEEecce
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEKAT  134 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~~  134 (259)
                      .+..+||||||+|..+..++...+. .++|+|+++.+++.+.+++...+++++.++++|+..+  .++++++|.|+++. 
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF-  200 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF-  200 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-
Confidence            3568999999999999999999776 9999999999999999999998988999999998653  35678899998642 


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                              ..||...++..-....+++.+.++|+|||.+.+.+-
T Consensus       201 --------PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD  236 (390)
T PRK14121        201 --------PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD  236 (390)
T ss_pred             --------CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence                    356754333222346899999999999999999764

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.49  E-value=1.9e-13  Score=125.37  Aligned_cols=105  Identities=25%  Similarity=0.309  Sum_probs=87.9

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC--CcCCCCceeEEEeccee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--LPFSNDCFDVVIEKATM  135 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~V~~~~~l  135 (259)
                      ++.+|||+|||+|..+..+++.+. +++|+|+++.+++.+++...  ..+++.++++|+..  +++++++||+|++..++
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l  113 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL  113 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence            467999999999999999998866 89999999999998765432  23468899999863  45667899999999999


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +++             ......++++++.++|+|||++++.+.
T Consensus       114 ~~l-------------~~~~~~~~l~~~~r~Lk~gG~l~~~d~  143 (475)
T PLN02336        114 MYL-------------SDKEVENLAERMVKWLKVGGYIFFRES  143 (475)
T ss_pred             HhC-------------CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            887             345678999999999999999998754

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.49  E-value=9.8e-13  Score=108.11  Aligned_cols=101  Identities=20%  Similarity=0.186  Sum_probs=82.4

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.++.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++...++.++.+..+|..+.....++||+|++...+
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~  154 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA  154 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence            45778999999999999998888765 89999999999999999999888878999999986532234689999986544


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ..                     +.+.+.+.|+|||.+++...
T Consensus       155 ~~---------------------~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        155 PE---------------------IPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             hh---------------------hhHHHHHhcCCCcEEEEEEc
Confidence            22                     23557889999999998654

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.49  E-value=5.5e-13  Score=108.46  Aligned_cols=106  Identities=14%  Similarity=0.281  Sum_probs=84.9

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCC-cCCCCceeEEE
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL-PFSNDCFDVVI  130 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~~~~~~fD~V~  130 (259)
                      .+.++.+|||+|||+|.++..++.. +.. +|+++|+++.+++.++++++..++ .++.++.+|+.+. +...+.||.|+
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~  116 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF  116 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence            4567899999999999999988765 333 899999999999999999988874 5688888888663 22235799999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +.+..                  .....+++.+.++|+|||++++...
T Consensus       117 ~~~~~------------------~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        117 IGGGS------------------EKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             ECCCc------------------ccHHHHHHHHHHHcCCCcEEEEEee
Confidence            75421                  3456889999999999999997543

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.49  E-value=6.4e-13  Score=113.38  Aligned_cols=119  Identities=18%  Similarity=0.231  Sum_probs=89.2

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .++.+|||+|||+|..+..++...+. +++++|+++.+++.+++++......++.+..+|+.+. ...++||+|++++++
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy  185 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPY  185 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCCc
Confidence            46789999999999999999988754 9999999999999999998722334689999998653 235689999998775


Q ss_pred             eeee-----------eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          136 EVLF-----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       136 ~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ...-           ..+...+....++......+++++.++|+|||.+++.
T Consensus       186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e  237 (275)
T PRK09328        186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE  237 (275)
T ss_pred             CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            3210           0000111122345566788999999999999999985

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.48  E-value=4.8e-13  Score=113.49  Aligned_cols=126  Identities=16%  Similarity=0.160  Sum_probs=93.5

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      ...++.+|||+|||+|..+..+++...  ..|+++|+++.+++.++++++..++.++.+.+.|...++...+.||.|++.
T Consensus        68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D  147 (264)
T TIGR00446        68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLD  147 (264)
T ss_pred             CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEc
Confidence            346788999999999999999888632  289999999999999999999999878899999987655444579999976


Q ss_pred             ceee---eeeeCCCCCCCCCchhH----HHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 ATME---VLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~---~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .+-.   .+..++...|.-.++..    ....++|+.+.++|||||++++.+++.
T Consensus       148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            4321   11122222232222222    123569999999999999999988764

>PRK14968 putative methyltransferase; Provisional

Probab=99.48  E-value=1e-12  Score=105.63  Aligned_cols=121  Identities=22%  Similarity=0.316  Sum_probs=89.0

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCCCcCCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .++.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++...+..+  +.+..+|+.+. +....||+|+++.+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p   99 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPP   99 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCC
Confidence            4678999999999999999998865 99999999999999999988777654  78888888763 34458999998876


Q ss_pred             eeeeeeCC------CCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          135 MEVLFVNS------GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       135 l~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +.......      ...+.....+......+++++.++|+|||.++++..+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~  150 (188)
T PRK14968        100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS  150 (188)
T ss_pred             cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            53210000      0000001112345678999999999999999887543

>PRK04266 fibrillarin; Provisional

Probab=99.47  E-value=1.4e-12  Score=107.82  Aligned_cols=102  Identities=16%  Similarity=0.194  Sum_probs=78.5

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC----cCCCCceeEE
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVV  129 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V  129 (259)
                      .+.++.+|||+|||+|..+..+++.... +|+++|+++.|++.+.++++..  +++.++.+|+...    ++. ++||+|
T Consensus        69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~-~~~D~i  145 (226)
T PRK04266         69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVV-EKVDVI  145 (226)
T ss_pred             CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhcc-ccCCEE
Confidence            3458899999999999999999987433 8999999999999888776543  4788888888652    122 469999


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ++...                 .......+++++.++|||||.+++.
T Consensus       146 ~~d~~-----------------~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        146 YQDVA-----------------QPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             EECCC-----------------ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            85321                 1123345789999999999999993

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.47  E-value=8.1e-13  Score=107.30  Aligned_cols=105  Identities=19%  Similarity=0.238  Sum_probs=82.1

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-CcCCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~~~~  134 (259)
                      .++.+|||+|||+|.++..+++..+. +++++|+++.+++.++++++..+..+++++.+|+.+ +......+|.++... 
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-  117 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-  117 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence            46789999999999999999876543 999999999999999999988887779999988754 221112356655321 


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                                        ......+++++.++|+|||.+++.....
T Consensus       118 ------------------~~~~~~~l~~~~~~LkpgG~li~~~~~~  145 (196)
T PRK07402        118 ------------------GRPIKEILQAVWQYLKPGGRLVATASSL  145 (196)
T ss_pred             ------------------CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence                              0234688999999999999999987654

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.47  E-value=1.3e-12  Score=118.26  Aligned_cols=123  Identities=19%  Similarity=0.323  Sum_probs=93.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEec
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEK  132 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~  132 (259)
                      ..++.+|||+|||+|..+..+++.+.. +|+++|+++.+++.++++++..++ +++++++|+.+++  +..++||.|+++
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~~~fD~Vl~D  320 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDGQPFDRILLD  320 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhcccCCCCEEEEC
Confidence            457899999999999999999988653 899999999999999999998886 4788899987653  235689999976


Q ss_pred             ceee---eeeeCCCCCCCCCchhH----HHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          133 ATME---VLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       133 ~~l~---~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .+..   .+...+...|...+...    ....+++..+.++|+|||.+++.+++
T Consensus       321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs  374 (427)
T PRK10901        321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS  374 (427)
T ss_pred             CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            5432   12222333344332222    23467899999999999999998864

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.47  E-value=3.5e-13  Score=111.55  Aligned_cols=107  Identities=25%  Similarity=0.337  Sum_probs=89.4

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC-CCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS-NDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l~  136 (259)
                      .+.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++...+..++.+...|+.+.+.. .++||+|++..+++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~  123 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE  123 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence            478999999999999999988877 7999999999999999988776654578888888765533 36899999988886


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +.               .+...+++.+.++|+|||.+++.+...
T Consensus       124 ~~---------------~~~~~~l~~~~~~L~~gG~l~i~~~~~  152 (224)
T TIGR01983       124 HV---------------PDPQAFIRACAQLLKPGGILFFSTINR  152 (224)
T ss_pred             hC---------------CCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            65               456789999999999999999876543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.46  E-value=1.2e-14  Score=114.25  Aligned_cols=140  Identities=19%  Similarity=0.258  Sum_probs=99.8

Q ss_pred             EEeeCCHHHHHHHHHHHhhcC---CCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHH
Q 025039           85 TCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLE  161 (259)
Q Consensus        85 ~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  161 (259)
                      +|+|+|+.|++.|+++.....   ..+++++++|+.++++++++||+|++..+++++               .+..++++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~---------------~d~~~~l~   65 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV---------------VDRLRAMK   65 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC---------------CCHHHHHH
Confidence            489999999999987764322   235899999999999888899999998888765               56789999


Q ss_pred             HHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEEEEEEEEeCCCCCchhhhhhccCCCCCCcccccc
Q 025039          162 GVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFH  241 (259)
Q Consensus       162 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                      ++.++|||||.+++.+++.+...   +......|....           ..+.-+.. ..... .|   .++..++..|.
T Consensus        66 ei~rvLkpGG~l~i~d~~~~~~~---~~~~~~~~~~~~-----------~~~~~~~~-~~~~~-~y---~yl~~si~~f~  126 (160)
T PLN02232         66 EMYRVLKPGSRVSILDFNKSNQS---VTTFMQGWMIDN-----------VVVPVATV-YDLAK-EY---EYLKYSINGYL  126 (160)
T ss_pred             HHHHHcCcCeEEEEEECCCCChH---HHHHHHHHHccc-----------hHhhhhHH-hCChH-HH---HhHHHHHHHCc
Confidence            99999999999999988765421   111111111100           11111111 11121 23   33888899999


Q ss_pred             cccccccccccccCCCC
Q 025039          242 EELEGEDYIFRTNIDEM  258 (259)
Q Consensus       242 ~~~~~~~~~~~~~~~~~  258 (259)
                      ...+..+.|+++||.++
T Consensus       127 ~~~el~~ll~~aGF~~~  143 (160)
T PLN02232        127 TGEELETLALEAGFSSA  143 (160)
T ss_pred             CHHHHHHHHHHcCCCcc
Confidence            99999999999999875

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.46  E-value=1e-12  Score=119.41  Aligned_cols=124  Identities=21%  Similarity=0.278  Sum_probs=93.7

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      ..++.+|||+|||+|..+..+++...  .+|+++|+++.+++.++++++..|+.++.+.++|+.++. +.++||+|++..
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~  326 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDA  326 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence            45778999999999999988887531  289999999999999999999999877999999998765 456899999643


Q ss_pred             e---eeeeeeCCCCCCCCCchhHH----HHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          134 T---MEVLFVNSGDPWNPQPETVT----KVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       134 ~---l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +   ...+...+...|...++...    ....+|..+.++|+|||++++.+++.
T Consensus       327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            2   11222223333443322222    34578999999999999999998765

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=1e-12  Score=105.53  Aligned_cols=111  Identities=23%  Similarity=0.227  Sum_probs=89.9

Q ss_pred             chHHHHhhc-ccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC
Q 025039           45 YSHFRHLVQ-PHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN  123 (259)
Q Consensus        45 ~~~~~~~l~-~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  123 (259)
                      ......++. ..+.++.+|||||||+|+.+..|++... +|+.+|..+...+.|+++++..++.++.+.++|...--.+.
T Consensus        58 P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~  136 (209)
T COG2518          58 PHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE  136 (209)
T ss_pred             cHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence            333444444 2346889999999999999999999977 99999999999999999999999989999999998743355


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ..||.|+.......+                     =+.+.+.|++||++++..
T Consensus       137 aPyD~I~Vtaaa~~v---------------------P~~Ll~QL~~gGrlv~Pv  169 (209)
T COG2518         137 APYDRIIVTAAAPEV---------------------PEALLDQLKPGGRLVIPV  169 (209)
T ss_pred             CCcCEEEEeeccCCC---------------------CHHHHHhcccCCEEEEEE
Confidence            789999987655432                     244667899999999864

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.45  E-value=1.8e-13  Score=108.23  Aligned_cols=104  Identities=27%  Similarity=0.403  Sum_probs=82.9

Q ss_pred             hhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-C-cCCCCceeE
Q 025039           51 LVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-L-PFSNDCFDV  128 (259)
Q Consensus        51 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD~  128 (259)
                      .+...++++.+|||+|||.|.++.+|.+....+..|+|++++.+..+.++       .+.++++|+.+ + .+++++||.
T Consensus         6 ~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~d~sFD~   78 (193)
T PF07021_consen    6 IIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFPDQSFDY   78 (193)
T ss_pred             HHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCCCCCccE
Confidence            44556788999999999999999999885333899999999999888775       57889999976 3 378999999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |+++.+++++               ..+..+|+++.|+   |...++..++
T Consensus        79 VIlsqtLQ~~---------------~~P~~vL~EmlRV---gr~~IVsFPN  111 (193)
T PF07021_consen   79 VILSQTLQAV---------------RRPDEVLEEMLRV---GRRAIVSFPN  111 (193)
T ss_pred             EehHhHHHhH---------------hHHHHHHHHHHHh---cCeEEEEecC
Confidence            9999999766               6677888888655   5566655443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.45  E-value=1.1e-12  Score=118.58  Aligned_cols=125  Identities=13%  Similarity=0.165  Sum_probs=93.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcC-C-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-CCCCceeEEEec
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDG-I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEK  132 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~  132 (259)
                      ..++.+|||+|||+|..+.++++.. . .+|+++|+++.+++.++++++..+++++.+.++|+..++ ...++||.|++.
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D  314 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD  314 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence            4578899999999999999998863 2 289999999999999999999999877899999987765 335689999975


Q ss_pred             ceee---eeeeCCCCCCCCCchhH----HHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 ATME---VLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~---~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .+-.   .+-.++...|...++..    ....++|..+.+.|||||.+++.+++.
T Consensus       315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            4331   11111111222222222    234678999999999999999998864

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.45  E-value=1.4e-12  Score=118.11  Aligned_cols=125  Identities=23%  Similarity=0.317  Sum_probs=94.4

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVV  129 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V  129 (259)
                      ..++.+|||+|||+|..+.++++.. .. +|+++|+++.+++.+++++...|+.++.++++|+.+++    ...++||.|
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  329 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI  329 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence            4578899999999999999998863 22 89999999999999999999999888999999988764    335689999


Q ss_pred             Eeccee---eeeeeCCCCCCCCCchhH----HHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          130 IEKATM---EVLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       130 ~~~~~l---~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++..+-   ..+...+...|.-.+...    ....++|.++.++|||||++++.+++-
T Consensus       330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            975331   222222333343222221    124688999999999999999987754

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.44  E-value=5.9e-13  Score=115.77  Aligned_cols=115  Identities=25%  Similarity=0.375  Sum_probs=86.3

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------C--CC-CeEEEEcccCCCc----CCC
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G--YK-EVKVLEADMLDLP----FSN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~--~~-~v~~~~~d~~~~~----~~~  123 (259)
                      ++.+|||+|||.|..+.-+...+...++|+|++...++.|+++....       .  .. ...++.+|.....    +..
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            78999999999999998888888889999999999999999998221       1  10 2456777776421    232


Q ss_pred             --CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039          124 --DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF  183 (259)
Q Consensus       124 --~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  183 (259)
                        ..||+|-|-..+|+.|.           +.+....+|.++...|+|||+++..++.....
T Consensus       142 ~~~~FDvVScQFalHY~Fe-----------se~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i  192 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFE-----------SEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI  192 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGS-----------SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred             cCCCcceeehHHHHHHhcC-----------CHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence              58999999999999873           55788899999999999999999988765433

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.44  E-value=1.1e-12  Score=108.91  Aligned_cols=100  Identities=22%  Similarity=0.271  Sum_probs=80.8

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .++.+|||+|||+|..+..+++.+. .++++|+|+.+++.|++++...+. .++.+..+|+.   ..+++||+|++..++
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v~~~~~l  137 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE---SLLGRFDTVVCLDVL  137 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch---hccCCcCEEEEcchh
Confidence            4678999999999999999999887 799999999999999999877665 35888888843   235789999998888


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEE
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF  173 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  173 (259)
                      +++             .......+++.+.+.+++++++
T Consensus       138 ~~~-------------~~~~~~~~l~~l~~~~~~~~~i  162 (230)
T PRK07580        138 IHY-------------PQEDAARMLAHLASLTRGSLIF  162 (230)
T ss_pred             hcC-------------CHHHHHHHHHHHHhhcCCeEEE
Confidence            665             3456778889888877544443

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.43  E-value=1.7e-12  Score=109.32  Aligned_cols=117  Identities=17%  Similarity=0.181  Sum_probs=85.7

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC--CCCceeEEEeccee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF--SNDCFDVVIEKATM  135 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~V~~~~~l  135 (259)
                      +.+|||+|||+|.++..++...+. +++++|+|+.+++.+++++..++   ++++++|+.+...  ..++||+|++++++
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~~~~fDlVv~NPPy  163 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTALRGRVDILAANAPY  163 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence            458999999999999999876544 89999999999999999987665   4778888865321  12579999999876


Q ss_pred             eeee-----------eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          136 EVLF-----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       136 ~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .-.-           ..+...|....++.+....++..+.++|+|||.+++...
T Consensus       164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~  217 (251)
T TIGR03704       164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS  217 (251)
T ss_pred             CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            3110           000011122234455677899999999999999998643

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.43  E-value=2.7e-12  Score=116.69  Aligned_cols=123  Identities=17%  Similarity=0.248  Sum_probs=93.4

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEe
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIE  131 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~  131 (259)
                      ..++.+|||+|||+|..+..+++.. .. +++++|+++.+++.++++++..++.++.++++|+.++.  ++ ++||+|++
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~  326 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV  326 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence            3567899999999999999998863 23 89999999999999999999999877999999997753  33 68999998


Q ss_pred             cceee---eeeeCCCCCCCCCchhHHH----HHHHHHHHHhcccCCcEEEEEecC
Q 025039          132 KATME---VLFVNSGDPWNPQPETVTK----VMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       132 ~~~l~---~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ..+..   .+...+...|...+.....    ..++|..+.++|||||.+++.+++
T Consensus       327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs  381 (444)
T PRK14902        327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT  381 (444)
T ss_pred             cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence            75421   2222233334433333222    357899999999999999987765

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.43  E-value=8e-13  Score=108.28  Aligned_cols=112  Identities=21%  Similarity=0.274  Sum_probs=79.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--------CCCCc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDC  125 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~  125 (259)
                      ++++.+|||+|||+|..+..+++.. .. .|+++|+++.           ...+++.++++|+.+.+        +..++
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~  117 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSK  117 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCC
Confidence            5678899999999999999998874 32 8999999981           12346899999998742        45678


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      ||+|+++...+..    +.+....+........+++.+.++|+|||.+++..+....
T Consensus       118 ~D~V~S~~~~~~~----g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~  170 (209)
T PRK11188        118 VQVVMSDMAPNMS----GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG  170 (209)
T ss_pred             CCEEecCCCCccC----CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence            9999997654332    1100000001112357899999999999999997776543

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.43  E-value=9.8e-13  Score=109.59  Aligned_cols=106  Identities=25%  Similarity=0.360  Sum_probs=87.6

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-CCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l  135 (259)
                      .++.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++...+. .+.+...++.+.+ ...+.||+|++..++
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l  124 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPGQFDVVTCMEML  124 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence            4678999999999999999998876 899999999999999998776554 5677777776653 234689999998877


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++.               .+...+++.+.++|+|||.+++..+.
T Consensus       125 ~~~---------------~~~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134        125 EHV---------------PDPASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             hcc---------------CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence            655               45568899999999999999987654

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.42  E-value=3.8e-12  Score=110.11  Aligned_cols=99  Identities=22%  Similarity=0.249  Sum_probs=77.2

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC-----CCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-----YKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.++++....+     ..++.+...|+..+   +++||+|+|.
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~  219 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL  219 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence            568999999999999999999887 89999999999999999976542     23467888887553   4689999999


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                      .+++|+             ..+....+++.+.+ +.+||.++
T Consensus       220 ~vL~H~-------------p~~~~~~ll~~l~~-l~~g~liI  247 (315)
T PLN02585        220 DVLIHY-------------PQDKADGMIAHLAS-LAEKRLII  247 (315)
T ss_pred             CEEEec-------------CHHHHHHHHHHHHh-hcCCEEEE
Confidence            888775             23445567777775 45665544

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.42  E-value=2.7e-12  Score=102.63  Aligned_cols=112  Identities=22%  Similarity=0.332  Sum_probs=89.1

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-CcCCCCceeEEEecceeee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~~~~l~~  137 (259)
                      +.-|||||||+|..+..+.+.|. .++|+|+|+.|++.|.++--     .-.++.+|+-+ +|+..++||-+++...+..
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~-----egdlil~DMG~GlpfrpGtFDg~ISISAvQW  124 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL-----EGDLILCDMGEGLPFRPGTFDGVISISAVQW  124 (270)
T ss_pred             CcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh-----hcCeeeeecCCCCCCCCCccceEEEeeeeee
Confidence            57899999999999999999997 89999999999999997421     12566777754 7899999999999888877


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++.......    ++...+..++..+..+|++|+..++--+-.
T Consensus       125 LcnA~~s~~----~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe  163 (270)
T KOG1541|consen  125 LCNADKSLH----VPKKRLLRFFGTLYSCLKRGARAVLQFYPE  163 (270)
T ss_pred             ecccCcccc----ChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence            654433222    244567889999999999999999865543

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.41  E-value=4.5e-12  Score=114.65  Aligned_cols=124  Identities=15%  Similarity=0.251  Sum_probs=90.0

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEE--EEcccCCCcC--CCCceeEEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKV--LEADMLDLPF--SNDCFDVVI  130 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~--~~~d~~~~~~--~~~~fD~V~  130 (259)
                      ..++.+|||+|||+|..+.++++.... +++++|+++.+++.++++++..++. +.+  ..+|....+.  ..++||.|+
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~~~~~~fD~Vl  314 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQWAENEQFDRIL  314 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccccccccccCEEE
Confidence            457889999999999999999886433 9999999999999999999988875 444  5666654432  456899999


Q ss_pred             eccee---eeeeeCCCCCCCCCchhHH----HHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          131 EKATM---EVLFVNSGDPWNPQPETVT----KVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       131 ~~~~l---~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +..+-   ..+...+...|...++...    ...++|.++.++|||||.+++.+++-
T Consensus       315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            65321   1122223333443332222    24689999999999999999988764

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.41  E-value=1.2e-11  Score=100.31  Aligned_cols=107  Identities=11%  Similarity=0.105  Sum_probs=82.1

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-cCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-PFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~l  135 (259)
                      .++.+|||+|||+|.+++.++..+..+|+++|.++.+++.++++++.+++.++.++++|+.+. +....+||+|++++++
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy  131 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF  131 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence            356899999999999999766666569999999999999999999988877799999998663 2223469999998885


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHh--cccCCcEEEEEecC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHR--VLKPDGLFISVSFG  179 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~  179 (259)
                      ..                .....+++.+..  +|+|+|++++....
T Consensus       132 ~~----------------g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        132 RK----------------GLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             CC----------------ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            32                123345555544  58999988876443

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.40  E-value=5.8e-12  Score=90.02  Aligned_cols=102  Identities=32%  Similarity=0.527  Sum_probs=82.6

Q ss_pred             cEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC-CCCceeEEEecceeeeee
Q 025039           61 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKATMEVLF  139 (259)
Q Consensus        61 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~l~~~~  139 (259)
                      +|+|+|||+|..+..+++....+++++|+++.+++.+++.........+.+...|+.+... ...++|+|+++.+++++ 
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~-   79 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL-   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence            5899999999999999884333999999999999999854444444568888888887553 45689999999887652 


Q ss_pred             eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          140 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                                   ......+++.+.+.|+|||.+++.
T Consensus        80 -------------~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 -------------VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             -------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence                         267789999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.39  E-value=1.8e-12  Score=115.61  Aligned_cols=135  Identities=15%  Similarity=0.166  Sum_probs=96.9

Q ss_pred             ccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEcccCC
Q 025039           41 WLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLD  118 (259)
Q Consensus        41 w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~  118 (259)
                      |+-..+.....+.. +.++.+|||+|||+|.+++.++..+..+|+++|+|+.+++.+++++..++++  +++++++|+.+
T Consensus       204 ~flDqr~~R~~~~~-~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~  282 (396)
T PRK15128        204 YYLDQRDSRLATRR-YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFK  282 (396)
T ss_pred             cChhhHHHHHHHHH-hcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHH
Confidence            44333333444443 3467899999999999998877666559999999999999999999999875  58999999877


Q ss_pred             Cc----CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          119 LP----FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       119 ~~----~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      ..    ...++||+|+++++...-   ...   ...........++..+.++|+|||.+++++++...
T Consensus       283 ~l~~~~~~~~~fDlVilDPP~f~~---~k~---~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~  344 (396)
T PRK15128        283 LLRTYRDRGEKFDVIVMDPPKFVE---NKS---QLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM  344 (396)
T ss_pred             HHHHHHhcCCCCCEEEECCCCCCC---ChH---HHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC
Confidence            42    124589999998775211   000   00011234567777889999999999998876543

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.39  E-value=1.1e-12  Score=110.33  Aligned_cols=125  Identities=26%  Similarity=0.357  Sum_probs=99.9

Q ss_pred             hhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC--C----CeEEEEcccCC------
Q 025039           51 LVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY--K----EVKVLEADMLD------  118 (259)
Q Consensus        51 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~----~v~~~~~d~~~------  118 (259)
                      ++..+.+++..++++|||.|..++-+.++|...++|+||....++.|+++.....-  .    .+.++.+|-..      
T Consensus       110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~  189 (389)
T KOG1975|consen  110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL  189 (389)
T ss_pred             HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence            44456678899999999999999999999998999999999999999998754421  1    25677877654      


Q ss_pred             CcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcccccc
Q 025039          119 LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRP  186 (259)
Q Consensus       119 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  186 (259)
                      +++++.+||+|-|-.++|+.|.           +.+....+|.++.+.|+|||+++-..+.....+..
T Consensus       190 ~e~~dp~fDivScQF~~HYaFe-----------tee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~r  246 (389)
T KOG1975|consen  190 LEFKDPRFDIVSCQFAFHYAFE-----------TEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKR  246 (389)
T ss_pred             ccCCCCCcceeeeeeeEeeeec-----------cHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHH
Confidence            2334555999999999999873           55788899999999999999999887766544433

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.36  E-value=2.6e-12  Score=104.14  Aligned_cols=93  Identities=29%  Similarity=0.429  Sum_probs=73.4

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-C-cCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-L-PFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD~V~~~  132 (259)
                      .++++.+|||+|||+|.++..+++.....++|+|+++.+++.++++       ++.++++|+.+ + ++++++||+|+++
T Consensus        10 ~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~~~~~sfD~Vi~~   82 (194)
T TIGR02081        10 LIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEAFPDKSFDYVILS   82 (194)
T ss_pred             hcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcccccCCCCcCEEEEh
Confidence            4567789999999999999988776443789999999999988652       46777888765 3 3556789999999


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP  169 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp  169 (259)
                      .+++++               .+...+++++.+.+++
T Consensus        83 ~~l~~~---------------~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        83 QTLQAT---------------RNPEEILDEMLRVGRH  104 (194)
T ss_pred             hHhHcC---------------cCHHHHHHHHHHhCCe
Confidence            999876               4566788888776553

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.36  E-value=4.3e-12  Score=121.16  Aligned_cols=135  Identities=16%  Similarity=0.196  Sum_probs=99.1

Q ss_pred             ccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEcccCC
Q 025039           41 WLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLD  118 (259)
Q Consensus        41 w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~  118 (259)
                      ++-..+....++.... ++.+|||+|||+|.+++.++..|..+|+++|+|+.+++.+++++..+++.  +++++++|+.+
T Consensus       522 ~flDqr~~R~~~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~  600 (702)
T PRK11783        522 LFLDHRPTRRMIGQMA-KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLA  600 (702)
T ss_pred             ECHHHHHHHHHHHHhc-CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHH
Confidence            3433444445555433 57899999999999999999987668999999999999999999999885  58999999876


Q ss_pred             Cc-CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          119 LP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       119 ~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .. ...++||+|+++++.......    .........+...++..+.++|+|||.+++.+...
T Consensus       601 ~l~~~~~~fDlIilDPP~f~~~~~----~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~  659 (702)
T PRK11783        601 WLKEAREQFDLIFIDPPTFSNSKR----MEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR  659 (702)
T ss_pred             HHHHcCCCcCEEEECCCCCCCCCc----cchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            32 114689999998764221000    00001234567789999999999999998876544

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.36  E-value=3.7e-12  Score=103.93  Aligned_cols=100  Identities=24%  Similarity=0.318  Sum_probs=78.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      ++++.+|||+|||+|..+..++.. +.. +|+++|.++..++.|++++...+..++.+.++|..........||.|++..
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~  149 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTA  149 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEee
Confidence            678999999999999999999887 433 799999999999999999999998889999999876433456899999876


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ....+                     -..+.+.|++||++++.
T Consensus       150 a~~~i---------------------p~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  150 AVPEI---------------------PEALLEQLKPGGRLVAP  171 (209)
T ss_dssp             BBSS-----------------------HHHHHTEEEEEEEEEE
T ss_pred             ccchH---------------------HHHHHHhcCCCcEEEEE
Confidence            65322                     24467789999999985

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.34  E-value=6.5e-12  Score=101.30  Aligned_cols=110  Identities=26%  Similarity=0.414  Sum_probs=77.2

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--------CCCC
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSND  124 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~~  124 (259)
                      .+.++.+|||+|||+|.++..+++... . +++++|+++.+           ..+++.++++|+.+..        .+.+
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~   97 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDD   97 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence            356789999999999999998887642 2 79999999854           1235788888876532        3456


Q ss_pred             ceeEEEecceeeeeeeCCCCCCC-CCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWN-PQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +||+|+++++.+..    + .|. ..+........++..+.++|+|||++++..+..
T Consensus        98 ~~D~V~~~~~~~~~----g-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~  149 (188)
T TIGR00438        98 KVDVVMSDAAPNIS----G-YWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG  149 (188)
T ss_pred             CccEEEcCCCCCCC----C-CccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence            79999986542210    0 011 111223445789999999999999999865543

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.34  E-value=1e-11  Score=107.63  Aligned_cols=101  Identities=17%  Similarity=0.113  Sum_probs=80.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      ++++.+|||+|||+|..+..+++....  .|+++|+++.+++.|+++++..+.+++.++++|..+......+||+|++..
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~  157 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV  157 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence            457789999999999999999886532  699999999999999999998888779999999876544446799999764


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .+.                     .....+.+.|+|||.+++..
T Consensus       158 g~~---------------------~ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        158 GVD---------------------EVPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             chH---------------------HhHHHHHHhcCCCCEEEEEe
Confidence            332                     12334677899999998753

>PHA03411 putative methyltransferase; Provisional

Probab=99.34  E-value=2.1e-11  Score=102.34  Aligned_cols=119  Identities=20%  Similarity=0.224  Sum_probs=85.5

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ...+|||+|||+|.++..++.... .+++++|+++.+++.+++++     +++.++++|+.+... ..+||+|++++++.
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~  137 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES-NEKFDVVISNPPFG  137 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc-cCCCcEEEEcCCcc
Confidence            457999999999999988877642 39999999999999998864     368899999987653 46899999999987


Q ss_pred             eeeeCCCCCCCC---CchhHHH--HHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          137 VLFVNSGDPWNP---QPETVTK--VMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       137 ~~~~~~~~~~~~---~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      +.-......|..   .......  ..+++..+..+|+|+|.++++-.+.+.
T Consensus       138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~  188 (279)
T PHA03411        138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY  188 (279)
T ss_pred             ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc
Confidence            652221111110   0001111  357888889999999988877444443

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=1.5e-11  Score=96.59  Aligned_cols=77  Identities=25%  Similarity=0.308  Sum_probs=68.5

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      .+.+|+|+|||||.+++.++-.|+.+|+++|+++++++.+++++.+.+ .++.++++|+.++.   ..+|+++.|++|..
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~~---~~~dtvimNPPFG~  120 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDFR---GKFDTVIMNPPFGS  120 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcchhhcC---CccceEEECCCCcc
Confidence            677899999999999999999998899999999999999999998843 47999999998865   56899999998865


Q ss_pred             e
Q 025039          138 L  138 (259)
Q Consensus       138 ~  138 (259)
                      .
T Consensus       121 ~  121 (198)
T COG2263         121 Q  121 (198)
T ss_pred             c
Confidence            4

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.30  E-value=1.8e-11  Score=102.01  Aligned_cols=102  Identities=19%  Similarity=0.141  Sum_probs=83.1

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-c-----CCCCcee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-P-----FSNDCFD  127 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~-----~~~~~fD  127 (259)
                      .++.+|||+|||+|..++.++... .. +++++|+++++++.|+++++..++.+ ++++.+|+.+. +     .+.++||
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD  146 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD  146 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence            467899999999999998888753 23 99999999999999999999998864 89999998763 1     1136899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      +|++..                  .......++..+.++|+|||++++-
T Consensus       147 ~VfiDa------------------~k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        147 FAFVDA------------------DKPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             EEEECC------------------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            999632                  2256678899999999999998874

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.30  E-value=3.1e-11  Score=95.68  Aligned_cols=78  Identities=21%  Similarity=0.387  Sum_probs=67.2

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++..  .++++++++|+.++++++..||.|+++.++
T Consensus        11 ~~~~~~vLEiG~G~G~lt~~l~~~~~-~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py   87 (169)
T smart00650       11 LRPGDTVLEIGPGKGALTEELLERAA-RVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLPY   87 (169)
T ss_pred             CCCcCEEEEECCCccHHHHHHHhcCC-eEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCCc
Confidence            34678999999999999999999865 999999999999999998764  347899999999887666679999998777


Q ss_pred             e
Q 025039          136 E  136 (259)
Q Consensus       136 ~  136 (259)
                      +
T Consensus        88 ~   88 (169)
T smart00650       88 N   88 (169)
T ss_pred             c
Confidence            4

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.29  E-value=8.2e-11  Score=101.15  Aligned_cols=126  Identities=19%  Similarity=0.231  Sum_probs=101.6

Q ss_pred             hHHHHhhc--ccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc-ccCCCcCC
Q 025039           46 SHFRHLVQ--PHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDLPFS  122 (259)
Q Consensus        46 ~~~~~~l~--~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~  122 (259)
                      +.+...+.  ..+.+|..|||.-||||..++.+.-.|. +++|.|++..|++-++.|++..++....+... |+..++++
T Consensus       183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~  261 (347)
T COG1041         183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLR  261 (347)
T ss_pred             HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCC
Confidence            34444444  3456889999999999999999999998 99999999999999999999998877766666 99999988


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +.++|.|++.+++.-.....+.      .-.+...++++.+.++|++||++++..+
T Consensus       262 ~~~vdaIatDPPYGrst~~~~~------~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         262 DNSVDAIATDPPYGRSTKIKGE------GLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             CCccceEEecCCCCcccccccc------cHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            7789999998877543211111      1135578899999999999999998766

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.29  E-value=6.3e-12  Score=101.99  Aligned_cols=104  Identities=15%  Similarity=0.286  Sum_probs=75.9

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      ...++|+|||+|..++.+++.. .+|+|+|+|+.|++.+++.....-.. ..+....++.++.-.++++|+|+|..++|.
T Consensus        34 h~~a~DvG~G~Gqa~~~iae~~-k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW  112 (261)
T KOG3010|consen   34 HRLAWDVGTGNGQAARGIAEHY-KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW  112 (261)
T ss_pred             cceEEEeccCCCcchHHHHHhh-hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence            3489999999998888888774 49999999999999998764322211 122333333343334789999999999987


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCc-EEEEEecC
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG-LFISVSFG  179 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~  179 (259)
                      +                ++.++.+++.++||+.| .+.+=.+.
T Consensus       113 F----------------dle~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen  113 F----------------DLERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             h----------------chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence            6                77899999999998877 54443333

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.29  E-value=1.8e-11  Score=99.03  Aligned_cols=110  Identities=25%  Similarity=0.366  Sum_probs=83.9

Q ss_pred             cEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-Cc--CCCCceeEEEecceee
Q 025039           61 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LP--FSNDCFDVVIEKATME  136 (259)
Q Consensus        61 ~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~--~~~~~fD~V~~~~~l~  136 (259)
                      .+||||||.|..+..+|...+. .++|+|+....+..+.+++...+++|+.++++|+.. +.  ++++++|.|+.+    
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~----   95 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN----   95 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE----
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe----
Confidence            8999999999999999999887 999999999999999999999999999999999877 22  445677777643    


Q ss_pred             eeeeCCCCCCCCCchhHH--HHHHHHHHHHhcccCCcEEEEEecC
Q 025039          137 VLFVNSGDPWNPQPETVT--KVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                           +.+||.+..+...  -...+++.+.++|+|||.+.+.+-.
T Consensus        96 -----FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~  135 (195)
T PF02390_consen   96 -----FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV  135 (195)
T ss_dssp             -----S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred             -----CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence                 3467765433322  2468999999999999999997643

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PLN02672 methionine S-methyltransferase

Probab=99.28  E-value=2.4e-11  Score=118.83  Aligned_cols=143  Identities=20%  Similarity=0.217  Sum_probs=101.6

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCC----------------CCeEEEEcccCCCcC
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY----------------KEVKVLEADMLDLPF  121 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~----------------~~v~~~~~d~~~~~~  121 (259)
                      +.+|||+|||+|.+++.+++..+. +++++|+|+.+++.|++|+..+++                ++++++++|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            468999999999999999988764 999999999999999999987542                258999999976431


Q ss_pred             C-CCceeEEEecceee------eeeeC--------------CCCCCCC---CchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          122 S-NDCFDVVIEKATME------VLFVN--------------SGDPWNP---QPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       122 ~-~~~fD~V~~~~~l~------~~~~~--------------~~~~~~~---~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      . ...||+|+++.++-      .+-..              +...+..   .+.+..-.++++.++.++|+|||.+++-.
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            1 13699999998752      11000              0011111   25667778999999999999999988743


Q ss_pred             -cCCccccc-cccCCCCCCcEEEEEE
Q 025039          178 -FGQPHFRR-PFFNAPQFTWSVEWIT  201 (259)
Q Consensus       178 -~~~~~~~~-~~~~~~~~~~~~~~~~  201 (259)
                       ..+..... .++...++.....|..
T Consensus       279 G~~q~~~v~~~l~~~~gf~~~~~~~~  304 (1082)
T PLN02672        279 GGRPGQAVCERLFERRGFRITKLWQT  304 (1082)
T ss_pred             CccHHHHHHHHHHHHCCCCeeEEeee
Confidence             33444444 4666666655555543

>PTZ00146 fibrillarin; Provisional

Probab=99.28  E-value=4.8e-11  Score=101.20  Aligned_cols=118  Identities=16%  Similarity=0.148  Sum_probs=85.1

Q ss_pred             cccccchHHHHhhc-----ccCCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEE
Q 025039           40 EWLKDYSHFRHLVQ-----PHIKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVL  112 (259)
Q Consensus        40 ~w~~~~~~~~~~l~-----~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~  112 (259)
                      .|-...+.+...+.     ..+.++.+|||+|||+|..+.++++.. .. .|+++|+++.+.+.+.+.+...  +++.++
T Consensus       109 ~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I  186 (293)
T PTZ00146        109 VWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPI  186 (293)
T ss_pred             eeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEE
Confidence            36666666665443     235688999999999999999999884 33 8999999998765555544332  478888


Q ss_pred             EcccCCC---cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          113 EADMLDL---PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       113 ~~d~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ..|+...   ....++||+|++...                 ...+...++.++.++|||||.|++.
T Consensus       187 ~~Da~~p~~y~~~~~~vDvV~~Dva-----------------~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        187 IEDARYPQKYRMLVPMVDVIFADVA-----------------QPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             ECCccChhhhhcccCCCCEEEEeCC-----------------CcchHHHHHHHHHHhccCCCEEEEE
Confidence            8898642   122357999987542                 1134556677899999999999994

>PHA03412 putative methyltransferase; Provisional

Probab=99.28  E-value=5.2e-11  Score=97.79  Aligned_cols=106  Identities=17%  Similarity=0.253  Sum_probs=78.3

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcC----CCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDG----ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      .+.+|||+|||+|.++..+++..    ..+|+++|+++.+++.|+++.     .++.+..+|+....+ +++||+|++|+
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~-~~~FDlIIsNP  122 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF-DTLFDMAISNP  122 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc-cCCccEEEECC
Confidence            46799999999999999888752    128999999999999999875     357889999976554 46899999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcE
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL  172 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  172 (259)
                      ++...-...   +.....+......++..+.+++++|+.
T Consensus       123 PY~~~~~~d---~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        123 PFGKIKTSD---FKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             CCCCccccc---cCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            986531110   001112334466789999997777775

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=2.3e-11  Score=99.98  Aligned_cols=111  Identities=24%  Similarity=0.260  Sum_probs=92.4

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEE
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVI  130 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~  130 (259)
                      ..+.++.+|||.|.|+|.++..|+.. |+. +|+.+|+.++.++.|++|++..++.+ +++..+|+.+...+. .||.|+
T Consensus        90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~  168 (256)
T COG2519          90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVF  168 (256)
T ss_pred             cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEE
Confidence            45779999999999999999999974 554 99999999999999999999998877 889999998865544 788888


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccc
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRR  185 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  185 (259)
                      .         |..           ++-++++.+.++|+|||.+++..+.-.+...
T Consensus       169 L---------Dmp-----------~PW~~le~~~~~Lkpgg~~~~y~P~veQv~k  203 (256)
T COG2519         169 L---------DLP-----------DPWNVLEHVSDALKPGGVVVVYSPTVEQVEK  203 (256)
T ss_pred             E---------cCC-----------ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Confidence            4         223           4447999999999999999998776554443

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.26  E-value=4.1e-11  Score=100.39  Aligned_cols=100  Identities=20%  Similarity=0.337  Sum_probs=84.8

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .+..+|+|+|+|.|..+..++++.++ +++.+|. |.+++.+++      .++++++.+|+++ +++.  +|+|+...++
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~-~~P~--~D~~~l~~vL  168 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD-PLPV--ADVYLLRHVL  168 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT-CCSS--ESEEEEESSG
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHh-hhcc--ccceeeehhh
Confidence            45578999999999999999999888 9999998 889999888      2579999999984 5554  9999999999


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC--cEEEEEecC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD--GLFISVSFG  179 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~~  179 (259)
                      |.+             +.++...+|+++++.|+||  |+|++.+.-
T Consensus       169 h~~-------------~d~~~~~iL~~~~~al~pg~~g~llI~e~~  201 (241)
T PF00891_consen  169 HDW-------------SDEDCVKILRNAAAALKPGKDGRLLIIEMV  201 (241)
T ss_dssp             GGS--------------HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred             hhc-------------chHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence            887             6788999999999999999  999998753

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK00811 spermidine synthase; Provisional

Probab=99.25  E-value=5.2e-11  Score=101.98  Aligned_cols=109  Identities=23%  Similarity=0.344  Sum_probs=81.5

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcC-----CCCeEEEEcccCCC-cCCCCceeEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKG-----YKEVKVLEADMLDL-PFSNDCFDVV  129 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~-~~~~~~fD~V  129 (259)
                      +.+.+||++|||+|..+..+++. +..+|+++|+++.+++.|++.+...+     -++++++.+|+... ....++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            45689999999999999999887 44489999999999999999875421     24689999998763 2235689999


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ++...-         ++.+  ...--..++++.+++.|+|||++++.
T Consensus       155 i~D~~d---------p~~~--~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        155 IVDSTD---------PVGP--AEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             EECCCC---------CCCc--hhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            975321         1111  01112368899999999999999874

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.25  E-value=2.1e-11  Score=100.38  Aligned_cols=110  Identities=21%  Similarity=0.345  Sum_probs=91.4

Q ss_pred             CcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEEeccee
Q 025039           60 SSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKATM  135 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~l  135 (259)
                      ..+||||||.|..+..+|+..+. .++|+|+....+..|.+++...+++|+.+++.|+..+-   .++++.|-|+     
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~-----  124 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIY-----  124 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEE-----
Confidence            48999999999999999999998 99999999999999999999999889999999987632   2334666555     


Q ss_pred             eeeeeCCCCCCCCCchhHHH--HHHHHHHHHhcccCCcEEEEEec
Q 025039          136 EVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                          ..+.+||.+..++...  ...+++.+.+.|+|||.+.+.|-
T Consensus       125 ----i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD  165 (227)
T COG0220         125 ----INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD  165 (227)
T ss_pred             ----EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence                4456889876554333  46899999999999999999763

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.25  E-value=5.8e-11  Score=104.81  Aligned_cols=135  Identities=19%  Similarity=0.218  Sum_probs=105.6

Q ss_pred             ccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCC
Q 025039           41 WLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLD  118 (259)
Q Consensus        41 w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~  118 (259)
                      ++-..+.....+...+. |++||++.|=||..+++++..|..+|+.||.|..+++.|++|++.++++.  +.++++|+++
T Consensus       201 fFlDqR~~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~  279 (393)
T COG1092         201 FFLDQRDNRRALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK  279 (393)
T ss_pred             eeHHhHHHHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH
Confidence            33444556666666666 99999999999999999999998899999999999999999999999854  7899999987


Q ss_pred             Cc----CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          119 LP----FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       119 ~~----~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      .-    -...+||+|+..++-..=  .....|    ....+...++..+.++|+|||.+++++++...
T Consensus       280 ~l~~~~~~g~~fDlIilDPPsF~r--~k~~~~----~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~  341 (393)
T COG1092         280 WLRKAERRGEKFDLIILDPPSFAR--SKKQEF----SAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF  341 (393)
T ss_pred             HHHHHHhcCCcccEEEECCccccc--Ccccch----hHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence            32    234589999987653111  111111    34567889999999999999999999877643

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.25  E-value=4.1e-11  Score=96.21  Aligned_cols=120  Identities=18%  Similarity=0.246  Sum_probs=96.7

Q ss_pred             hHHHHhhcccCCCCCc-EEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcccCCCc--
Q 025039           46 SHFRHLVQPHIKPNSS-VLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDLP--  120 (259)
Q Consensus        46 ~~~~~~l~~~~~~~~~-vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~--  120 (259)
                      .-+...+...+++... |||||||||..+.++++..+. ...-.|+++..+...+......+.+++ .-+..|+.+.+  
T Consensus        12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~   91 (204)
T PF06080_consen   12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWP   91 (204)
T ss_pred             hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCc
Confidence            3466777777776666 999999999999999999887 888999999998888887777776663 34556666532  


Q ss_pred             C------CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          121 F------SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       121 ~------~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .      ..++||.|+|.+++|..             .......+++.+.++|++||.|+++.+
T Consensus        92 ~~~~~~~~~~~~D~i~~~N~lHI~-------------p~~~~~~lf~~a~~~L~~gG~L~~YGP  142 (204)
T PF06080_consen   92 WELPAPLSPESFDAIFCINMLHIS-------------PWSAVEGLFAGAARLLKPGGLLFLYGP  142 (204)
T ss_pred             cccccccCCCCcceeeehhHHHhc-------------CHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            2      24589999999999877             557889999999999999999998754

The function of this family is unknown.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=2.8e-10  Score=88.54  Aligned_cols=148  Identities=19%  Similarity=0.264  Sum_probs=105.2

Q ss_pred             CCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           59 NSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ...+||||||+|..+.+|++. +++ .+.++|+++.+++..++.++.++. ++..++.|+...- ..++.|+++.++++-
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l-~~~~VDvLvfNPPYV  121 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGL-RNESVDVLVFNPPYV  121 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhh-ccCCccEEEECCCcC
Confidence            678999999999999999886 444 788999999999999999888775 5788888887632 348999999887652


Q ss_pred             eeeeCCC--------CCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC--ccccccccCCCCCCcEEEEEEe-CCe
Q 025039          137 VLFVNSG--------DPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ--PHFRRPFFNAPQFTWSVEWITF-GDG  205 (259)
Q Consensus       137 ~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~  205 (259)
                      -  .++.        ..|.-+.++.+...+++..+-.+|.|.|+++++....  ++-.-.++...++.....+... +.+
T Consensus       122 p--t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~Rk~~~E  199 (209)
T KOG3191|consen  122 P--TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQRKAGGE  199 (209)
T ss_pred             c--CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEEEEecCCc
Confidence            1  1111        1255556677778889999999999999999987643  2222224455555555444433 333


Q ss_pred             EEEEE
Q 025039          206 FHYFF  210 (259)
Q Consensus       206 ~~~~~  210 (259)
                      +.+.+
T Consensus       200 ~l~il  204 (209)
T KOG3191|consen  200 TLSIL  204 (209)
T ss_pred             eEEEE
Confidence            33333

>PRK04457 spermidine synthase; Provisional

Probab=99.24  E-value=6.3e-11  Score=100.35  Aligned_cols=113  Identities=16%  Similarity=0.287  Sum_probs=84.4

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCC-cCCCCceeEEEecc
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL-PFSNDCFDVVIEKA  133 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~~~~~~fD~V~~~~  133 (259)
                      +++.+|||+|||+|.++..+++..+. +++++|+++++++.|++++...+. ++++++.+|+.+. ....++||+|++..
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            45689999999999999999887665 899999999999999998865543 4689999998653 22235799999742


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                       ++..    ..+      ..-...++++.+.++|+|||++++..+..
T Consensus       145 -~~~~----~~~------~~l~t~efl~~~~~~L~pgGvlvin~~~~  180 (262)
T PRK04457        145 -FDGE----GII------DALCTQPFFDDCRNALSSDGIFVVNLWSR  180 (262)
T ss_pred             -CCCC----CCc------cccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence             1110    000      00123689999999999999999865543

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.21  E-value=8.7e-11  Score=106.86  Aligned_cols=101  Identities=19%  Similarity=0.335  Sum_probs=80.0

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC----cCCCCceeEEEec
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIEK  132 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~~  132 (259)
                      .++.+|||+|||+|.+++.+++.+. +|+|+|+|+.|++.|++++..+++.++++.++|+.+.    ++.+++||+|+++
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d  374 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD  374 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence            4678999999999999999998875 9999999999999999999988887899999998652    2334679999987


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ++..                  .....++.+.+ ++|++++++..
T Consensus       375 PPr~------------------g~~~~~~~l~~-~~~~~ivyvSC  400 (443)
T PRK13168        375 PPRA------------------GAAEVMQALAK-LGPKRIVYVSC  400 (443)
T ss_pred             cCCc------------------ChHHHHHHHHh-cCCCeEEEEEe
Confidence            6542                  12345555555 68888777653

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.21  E-value=7.5e-11  Score=96.13  Aligned_cols=104  Identities=21%  Similarity=0.298  Sum_probs=87.3

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEE-cccCCC-c-CCCCceeEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLE-ADMLDL-P-FSNDCFDVV  129 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~-~d~~~~-~-~~~~~fD~V  129 (259)
                      ..++++|||+|++.|..+++++...+ + +++.+|+++++.+.|++++++.|+.+ +..+. +|..+. . ...++||+|
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            34788999999999999999999866 4 89999999999999999999999977 77777 476552 2 345899999


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +.    ++              ...+.+.+++.+.++|+|||++++-.
T Consensus       137 FI----Da--------------dK~~yp~~le~~~~lLr~GGliv~DN  166 (219)
T COG4122         137 FI----DA--------------DKADYPEYLERALPLLRPGGLIVADN  166 (219)
T ss_pred             EE----eC--------------ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence            94    43              34677899999999999999999853

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.18  E-value=6.1e-11  Score=101.48  Aligned_cols=106  Identities=19%  Similarity=0.333  Sum_probs=85.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +-+++.|||+|||+|.++++.+++|..+|+++|.|.-+ +.|++.+..+++.+ ++++.+.+.++.+|.+++|+|++-.+
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM  136 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM  136 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence            44789999999999999999999998899999987654 99999999999987 89999988887666789999998755


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                      =..++.            ...+..+|-.=-+.|+|||.++
T Consensus       137 Gy~Ll~------------EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  137 GYFLLY------------ESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hHHHHH------------hhhhhhhhhhhhhccCCCceEc
Confidence            443321            1344455555568999999987

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.18  E-value=9.4e-11  Score=95.40  Aligned_cols=102  Identities=25%  Similarity=0.334  Sum_probs=82.8

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-c-----CCCCceeE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-P-----FSNDCFDV  128 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~-----~~~~~fD~  128 (259)
                      ++.+|||+||++|..++++++.-+.  +++.+|++++..+.|+++++..|+.+ ++++.+|+.+. +     .+.++||+
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~  124 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF  124 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence            6789999999999999999987442  99999999999999999999988864 99999998762 1     11357999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      |+...                  ...+...+++.+.++|+|||++++-.
T Consensus       125 VFiDa------------------~K~~y~~y~~~~~~ll~~ggvii~DN  155 (205)
T PF01596_consen  125 VFIDA------------------DKRNYLEYFEKALPLLRPGGVIIADN  155 (205)
T ss_dssp             EEEES------------------TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred             EEEcc------------------cccchhhHHHHHhhhccCCeEEEEcc
Confidence            99532                  33567789999999999999999853

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.16  E-value=1.2e-10  Score=101.42  Aligned_cols=76  Identities=21%  Similarity=0.296  Sum_probs=66.1

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC-CCCceeEEEecce
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKAT  134 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~  134 (259)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++++.+++++++++++|+.++.. ..+.||+|+++++
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP  249 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP  249 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence            468999999999999999999875 999999999999999999999888779999999976432 2357999998755

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.16  E-value=4.4e-10  Score=90.00  Aligned_cols=118  Identities=19%  Similarity=0.307  Sum_probs=85.3

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-Cc---CC
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-LP---FS  122 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~---~~  122 (259)
                      +...+....-++.+|||+.||+|.+++..+++|..+|+.+|.++.++...+++++..+..+ +.++..|... +.   ..
T Consensus        32 lFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~  111 (183)
T PF03602_consen   32 LFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKK  111 (183)
T ss_dssp             HHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHC
T ss_pred             HHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhccc
Confidence            4455554313689999999999999999999998899999999999999999999988776 8888888654 21   24


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHH--hcccCCcEEEEEecCC
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVH--RVLKPDGLFISVSFGQ  180 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~  180 (259)
                      ...||+|++.+++..-               .....++..+.  .+|+++|.+++-....
T Consensus       112 ~~~fDiIflDPPY~~~---------------~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  112 GEKFDIIFLDPPYAKG---------------LYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             TS-EEEEEE--STTSC---------------HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             CCCceEEEECCCcccc---------------hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            5789999988776432               11466777776  7999999888765443

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.15  E-value=2.7e-10  Score=92.49  Aligned_cols=110  Identities=16%  Similarity=0.324  Sum_probs=79.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcC-----CC----------------------
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKG-----YK----------------------  107 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~----------------------  107 (259)
                      ...+..+|||||.+|.+++.+++. |...++|+||++..++.|++.++...     +.                      
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~  135 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR  135 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence            346789999999999999999987 44489999999999999999764321     00                      


Q ss_pred             --------CeEEEEc-------ccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcE
Q 025039          108 --------EVKVLEA-------DMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL  172 (259)
Q Consensus       108 --------~v~~~~~-------d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  172 (259)
                              ++.+...       |+.  .+....||+|+|-.+--.+..+         .+++.+.+++.++.++|.|||+
T Consensus       136 a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLN---------wgD~GL~~ff~kis~ll~pgGi  204 (288)
T KOG2899|consen  136 AFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLN---------WGDDGLRRFFRKISSLLHPGGI  204 (288)
T ss_pred             cccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecc---------cccHHHHHHHHHHHHhhCcCcE
Confidence                    1111111       111  1234579999996654444333         2568899999999999999999


Q ss_pred             EEEE
Q 025039          173 FISV  176 (259)
Q Consensus       173 l~~~  176 (259)
                      |++.
T Consensus       205 LvvE  208 (288)
T KOG2899|consen  205 LVVE  208 (288)
T ss_pred             EEEc
Confidence            9984

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.14  E-value=2e-10  Score=95.70  Aligned_cols=134  Identities=25%  Similarity=0.424  Sum_probs=90.9

Q ss_pred             ccchhhhcCCCCcccccccchHHHHhh-cccCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHh
Q 025039           26 PHYWDERFSDEEHYEWLKDYSHFRHLV-QPHIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLL  102 (259)
Q Consensus        26 ~~~w~~~~~~~~~~~w~~~~~~~~~~l-~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~  102 (259)
                      .+-|.........+-+-.   ++.-++ ...+.||.+|||.|.|+|.++..|++. ++. +|+.+|+.++.++.|+++++
T Consensus        10 ~e~~~~~l~rrtQIiYpk---D~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~   86 (247)
T PF08704_consen   10 PELWTLSLPRRTQIIYPK---DISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE   86 (247)
T ss_dssp             HHHHHHTS-SSS----HH---HHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCcceeeCc---hHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH
Confidence            455666665544432222   222222 245779999999999999999999976 555 99999999999999999999


Q ss_pred             hcCCC-CeEEEEcccCCCcCC---CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcc-cCCcEEEEEe
Q 025039          103 LKGYK-EVKVLEADMLDLPFS---NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVL-KPDGLFISVS  177 (259)
Q Consensus       103 ~~~~~-~v~~~~~d~~~~~~~---~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~  177 (259)
                      ..+++ ++++.+.|+.+-.+.   ...+|.|+.         |...||           .++..+.++| +|||++.+..
T Consensus        87 ~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfL---------Dlp~Pw-----------~~i~~~~~~L~~~gG~i~~fs  146 (247)
T PF08704_consen   87 RHGLDDNVTVHHRDVCEEGFDEELESDFDAVFL---------DLPDPW-----------EAIPHAKRALKKPGGRICCFS  146 (247)
T ss_dssp             HTTCCTTEEEEES-GGCG--STT-TTSEEEEEE---------ESSSGG-----------GGHHHHHHHE-EEEEEEEEEE
T ss_pred             HcCCCCCceeEecceecccccccccCcccEEEE---------eCCCHH-----------HHHHHHHHHHhcCCceEEEEC
Confidence            99986 489999999653332   246788773         233445           5788899999 8999999987


Q ss_pred             cCCcc
Q 025039          178 FGQPH  182 (259)
Q Consensus       178 ~~~~~  182 (259)
                      ++...
T Consensus       147 P~ieQ  151 (247)
T PF08704_consen  147 PCIEQ  151 (247)
T ss_dssp             SSHHH
T ss_pred             CCHHH
Confidence            76543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PLN02476 O-methyltransferase

Probab=99.14  E-value=2.9e-10  Score=96.21  Aligned_cols=102  Identities=12%  Similarity=0.104  Sum_probs=84.3

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCC-c-C----CCCcee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-F----SNDCFD  127 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-~----~~~~fD  127 (259)
                      .++++|||+|+++|..+++++...+ . +++++|.+++..+.|+++++..|+. +++++.+|+.+. + +    ..++||
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD  196 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD  196 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence            3578999999999999999988532 2 8999999999999999999999986 499999998662 2 1    135899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      +|+..+                  ...+...+++.+.++|+|||.+++-
T Consensus       197 ~VFIDa------------------~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        197 FAFVDA------------------DKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             EEEECC------------------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            999532                  3367789999999999999999874

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.14  E-value=2.3e-10  Score=92.39  Aligned_cols=106  Identities=18%  Similarity=0.265  Sum_probs=81.1

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL  138 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~  138 (259)
                      ..+.||.|||-|+.+..++...+.+|-.+|++++.++.|++.+....-.-.++.+..+.++..+..+||+|++-.++.|+
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghL  135 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHL  135 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS
T ss_pred             cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccC
Confidence            47899999999999998877667799999999999999998776532122577788887776455799999999999998


Q ss_pred             eeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          139 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                                   +..+..++|++....|+|+|++++-+
T Consensus       136 -------------TD~dlv~fL~RCk~~L~~~G~IvvKE  161 (218)
T PF05891_consen  136 -------------TDEDLVAFLKRCKQALKPNGVIVVKE  161 (218)
T ss_dssp             --------------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -------------CHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence                         78999999999999999999999854

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.14  E-value=2e-10  Score=91.83  Aligned_cols=108  Identities=21%  Similarity=0.335  Sum_probs=78.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-e---------EEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCC
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-A---------ITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSND  124 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~---------v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~  124 (259)
                      ..++..|||..||+|.+.++.+..+.. .         ++|+|+++++++.+++|+...++.. +.+...|+.++++..+
T Consensus        26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~  105 (179)
T PF01170_consen   26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG  105 (179)
T ss_dssp             --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred             CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence            457789999999999999988777554 4         8899999999999999999988865 8899999999887678


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD  170 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  170 (259)
                      ++|+|+++.++..-...       ..+...-...+++++.+++++.
T Consensus       106 ~~d~IvtnPPyG~r~~~-------~~~~~~ly~~~~~~~~~~l~~~  144 (179)
T PF01170_consen  106 SVDAIVTNPPYGRRLGS-------KKDLEKLYRQFLRELKRVLKPR  144 (179)
T ss_dssp             BSCEEEEE--STTSHCH-------HHHHHHHHHHHHHHHHCHSTTC
T ss_pred             CCCEEEECcchhhhccC-------HHHHHHHHHHHHHHHHHHCCCC
Confidence            99999999887533110       0011233467788899999983

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.14  E-value=2.5e-09  Score=86.23  Aligned_cols=105  Identities=16%  Similarity=0.136  Sum_probs=79.5

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCC-c-C-C-CCceeEEEec
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-F-S-NDCFDVVIEK  132 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-~-~-~~~fD~V~~~  132 (259)
                      ++.+|||++||+|.+++.++.+|..+|+++|.++.+++.++++++..++. +++++++|+.+. . . . ...||+|+..
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D  128 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD  128 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence            57899999999999999999999879999999999999999999988875 488999998552 1 1 1 2248998887


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHH--HhcccCCcEEEEEec
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGV--HRVLKPDGLFISVSF  178 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~  178 (259)
                      +++..-                ....++..+  ..+|+++|++++...
T Consensus       129 PPy~~~----------------~~~~~l~~l~~~~~l~~~~iiv~E~~  160 (189)
T TIGR00095       129 PPFFNG----------------ALQALLELCENNWILEDTVLIVVEED  160 (189)
T ss_pred             cCCCCC----------------cHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            776321                223334433  347888887776533

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.14  E-value=4.1e-10  Score=95.80  Aligned_cols=135  Identities=20%  Similarity=0.258  Sum_probs=96.7

Q ss_pred             ccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEccc
Q 025039           39 YEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADM  116 (259)
Q Consensus        39 ~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~  116 (259)
                      ..++-..+.....+.... .+++|||+.|=||..+++.+..|..+|+.||.|..+++.+++++..++++  .++++.+|+
T Consensus       105 tGlFlDqR~nR~~v~~~~-~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dv  183 (286)
T PF10672_consen  105 TGLFLDQRENRKWVRKYA-KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDV  183 (286)
T ss_dssp             TSS-GGGHHHHHHHHHHC-TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-H
T ss_pred             ceEcHHHHhhHHHHHHHc-CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCH
Confidence            345666666677766554 58899999999999999998888779999999999999999999999875  489999998


Q ss_pred             CCC-c--CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039          117 LDL-P--FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF  183 (259)
Q Consensus       117 ~~~-~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  183 (259)
                      .+. .  ...++||+|++.++-..   ..  .+    .-..+..+++..+.++|+|||.+++++++....
T Consensus       184 f~~l~~~~~~~~fD~IIlDPPsF~---k~--~~----~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~  244 (286)
T PF10672_consen  184 FKFLKRLKKGGRFDLIILDPPSFA---KS--KF----DLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS  244 (286)
T ss_dssp             HHHHHHHHHTT-EEEEEE--SSEE---SS--TC----EHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-
T ss_pred             HHHHHHHhcCCCCCEEEECCCCCC---CC--HH----HHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC
Confidence            762 1  13468999998765321   10  11    123577889999999999999999888766433

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.12  E-value=2.3e-11  Score=97.95  Aligned_cols=99  Identities=25%  Similarity=0.454  Sum_probs=78.0

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEeccee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATM  135 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l  135 (259)
                      +-.++||+|||||..+..+..+.. +++|+|+|+.|+++|.++-.   +  -+..+.++..+.  ...+.||+|++..++
T Consensus       125 ~F~~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~eKg~---Y--D~L~~Aea~~Fl~~~~~er~DLi~AaDVl  198 (287)
T COG4976         125 PFRRMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHEKGL---Y--DTLYVAEAVLFLEDLTQERFDLIVAADVL  198 (287)
T ss_pred             ccceeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHhccc---h--HHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence            357999999999999999988866 89999999999999988621   1  122333333221  345789999998888


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      -++               ..+..++-.+..+|+|||.|.++.
T Consensus       199 ~Yl---------------G~Le~~~~~aa~~L~~gGlfaFSv  225 (287)
T COG4976         199 PYL---------------GALEGLFAGAAGLLAPGGLFAFSV  225 (287)
T ss_pred             Hhh---------------cchhhHHHHHHHhcCCCceEEEEe
Confidence            766               677889999999999999999864

>TIGR00417 speE spermidine synthase

Probab=99.12  E-value=4.6e-10  Score=95.59  Aligned_cols=110  Identities=21%  Similarity=0.287  Sum_probs=79.4

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcC----CCCeEEEEcccCCC-cCCCCceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL-PFSNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~-~~~~~~fD~V~  130 (259)
                      +.+.+||++|||+|..+..+++... .+++++|+++.+++.+++.+...+    .+++++..+|..+. ....++||+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            3456999999999999998888763 389999999999999999875432    23577888777552 22246899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +......         .+  ...--..++++.+.++|+|||++++..
T Consensus       151 ~D~~~~~---------~~--~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       151 VDSTDPV---------GP--AETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             EeCCCCC---------Cc--ccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            7543110         00  000113688999999999999999863

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.11  E-value=8e-10  Score=100.39  Aligned_cols=125  Identities=17%  Similarity=0.172  Sum_probs=91.4

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-CCCCceeEEEe
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIE  131 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~  131 (259)
                      ...++.+|||+|||+|.-+.++++...+  .++++|+++..++.++++++..|+.++.+...|...+. ...+.||.|++
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv  189 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL  189 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence            3468899999999999999999887422  89999999999999999999999988888888887653 22357999994


Q ss_pred             cce---eeeeeeCCCCCCCCCchh----HHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          132 KAT---MEVLFVNSGDPWNPQPET----VTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       132 ~~~---l~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ..+   ...+..++...|.-.++.    .....++|..+.+.|||||.|+.++++
T Consensus       190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence            321   111111222222211122    223467999999999999999998875

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.11  E-value=2.3e-10  Score=91.64  Aligned_cols=154  Identities=16%  Similarity=0.278  Sum_probs=85.2

Q ss_pred             hhhhcCCCCcccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC
Q 025039           29 WDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE  108 (259)
Q Consensus        29 w~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~  108 (259)
                      |++=|+.+...|...+...+...+.. .+++..|.|+|||.+.++..+. .+. +|..+|+.+.               +
T Consensus        44 YH~Gfr~Qv~~WP~nPvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva~---------------n  105 (219)
T PF05148_consen   44 YHEGFRQQVKKWPVNPVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVAP---------------N  105 (219)
T ss_dssp             HHHHHHHHHCTSSS-HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH---S----EEEEESS-S---------------S
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHh-cCCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccCC---------------C
Confidence            34445443333333444556666663 3556899999999999996553 333 7999999752               3


Q ss_pred             eEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcccccccc
Q 025039          109 VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFF  188 (259)
Q Consensus       109 v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  188 (259)
                      -.++..|+...|++++++|++++.-++-      |          .+...++.++.|+|||||.|.+.+....-.....|
T Consensus       106 ~~Vtacdia~vPL~~~svDv~VfcLSLM------G----------Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F  169 (219)
T PF05148_consen  106 PRVTACDIANVPLEDESVDVAVFCLSLM------G----------TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQF  169 (219)
T ss_dssp             TTEEES-TTS-S--TT-EEEEEEES---------S----------S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHH
T ss_pred             CCEEEecCccCcCCCCceeEEEEEhhhh------C----------CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHH
Confidence            3467789999999999999988644331      1          47789999999999999999998764321111111


Q ss_pred             -C-CCCCCcEEEEEEeCCeEEEEEEEEEeC
Q 025039          189 -N-APQFTWSVEWITFGDGFHYFFYILRKG  216 (259)
Q Consensus       189 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (259)
                       . -..+++.....+..+..++.+...+..
T Consensus       170 ~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~  199 (219)
T PF05148_consen  170 IKALKKLGFKLKSKDESNKHFVLFEFKKIR  199 (219)
T ss_dssp             HHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred             HHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence             1 122455666666666655555555444

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.10  E-value=2.4e-09  Score=82.35  Aligned_cols=116  Identities=22%  Similarity=0.403  Sum_probs=93.4

Q ss_pred             HHHHhhcccC--CCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--
Q 025039           47 HFRHLVQPHI--KPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--  120 (259)
Q Consensus        47 ~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--  120 (259)
                      .+.+.+...+  ..+.-|||+|.|||.++..+.++|..  .++++|+|++.+....+..     +.+.++++|+.++.  
T Consensus        35 ~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~  109 (194)
T COG3963          35 ILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTT  109 (194)
T ss_pred             HHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHH
Confidence            3444444444  35678999999999999999999865  8999999999999998875     46778999988754  


Q ss_pred             ---CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          121 ---FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       121 ---~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                         .++..||.|+|.-++-.+             ......++|+.+...|.+||.++..++++
T Consensus       110 l~e~~gq~~D~viS~lPll~~-------------P~~~~iaile~~~~rl~~gg~lvqftYgp  159 (194)
T COG3963         110 LGEHKGQFFDSVISGLPLLNF-------------PMHRRIAILESLLYRLPAGGPLVQFTYGP  159 (194)
T ss_pred             HhhcCCCeeeeEEeccccccC-------------cHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence               456789999997665433             44667899999999999999999988883

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.10  E-value=4.3e-10  Score=90.84  Aligned_cols=106  Identities=24%  Similarity=0.328  Sum_probs=71.2

Q ss_pred             CCCcEEEEcCCCCc----chHHHHhc-----CCC-eEEEeeCCHHHHHHHHHHH-------------------hhcC---
Q 025039           58 PNSSVLELGCGNSR----LSEGLYND-----GIT-AITCIDLSAVAVEKMQERL-------------------LLKG---  105 (259)
Q Consensus        58 ~~~~vLDiGcG~G~----~~~~l~~~-----~~~-~v~~vD~s~~~~~~a~~~~-------------------~~~~---  105 (259)
                      +.-+|+..||++|.    +++.+.+.     +.. +++|+|+|+.+++.|++-.                   ...+   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            45789999999996    45555551     223 8999999999999998731                   0000   


Q ss_pred             -----C-CCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          106 -----Y-KEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       106 -----~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                           + ..|+|...|+.+.....+.||+|+|.+++-++             +.+...++++.+.+.|+|||+|++-
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-------------~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-------------DPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--------------HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-------------CHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                 1 34888889988833345789999999999877             6678899999999999999999974

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.10  E-value=1.2e-09  Score=90.30  Aligned_cols=119  Identities=18%  Similarity=0.227  Sum_probs=89.4

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEccc----CC-CcCCCCceeEEE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADM----LD-LPFSNDCFDVVI  130 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~----~~-~~~~~~~fD~V~  130 (259)
                      .+..|||+|||+|..+..++..-++ +++++|.|+.++..|.+|+...++.+ +.+++.++    .. .+...+..|+++
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv  227 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV  227 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence            4568999999999999999887666 99999999999999999999888765 66664433    22 234568899999


Q ss_pred             ecceeeeeeeCC-------------CCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          131 EKATMEVLFVNS-------------GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       131 ~~~~l~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+++-  ..+.             ...+..+.++...+..++.-+.+.|+|||.+.+...
T Consensus       228 sNPPYI--~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  228 SNPPYI--RKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             cCCCcc--cccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence            998762  1111             111112345667788889999999999999998654

>PLN02366 spermidine synthase

Probab=99.10  E-value=1.1e-09  Score=94.53  Aligned_cols=110  Identities=16%  Similarity=0.257  Sum_probs=80.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhc----CCCCeEEEEcccCCCc--CCCCceeE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADMLDLP--FSNDCFDV  128 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~--~~~~~fD~  128 (259)
                      .+.+.+||++|||.|..+..+++... .+++.+|+++.+++.+++.+...    .-++++++.+|+...-  .+.+.||+
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            35678999999999999999988743 38999999999999999987542    1246999999976531  22468999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      |++...-         ++.+  ...--..++++.++++|+|||+++..
T Consensus       169 Ii~D~~d---------p~~~--~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        169 IIVDSSD---------PVGP--AQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             EEEcCCC---------CCCc--hhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            9974321         1111  01112367899999999999999863

>PRK01581 speE spermidine synthase; Validated

Probab=99.10  E-value=3.9e-10  Score=98.20  Aligned_cols=112  Identities=17%  Similarity=0.178  Sum_probs=79.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHH--Hh---h--cCCCCeEEEEcccCCC-cCCCCce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQER--LL---L--KGYKEVKVLEADMLDL-PFSNDCF  126 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~--~~---~--~~~~~v~~~~~d~~~~-~~~~~~f  126 (259)
                      ...+.+||++|||+|..+..+++... .+++++|+++++++.|++.  +.   .  ..-++++++.+|+.+. ....+.|
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence            34567999999999999988888653 3999999999999999962  11   1  1225689999998773 3335689


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      |+|++..+- -        ..+ +...---.++++.+++.|+|||++++..
T Consensus       228 DVIIvDl~D-P--------~~~-~~~~LyT~EFy~~~~~~LkPgGV~V~Qs  268 (374)
T PRK01581        228 DVIIIDFPD-P--------ATE-LLSTLYTSELFARIATFLTEDGAFVCQS  268 (374)
T ss_pred             cEEEEcCCC-c--------ccc-chhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            999976321 0        000 0011123678999999999999998764

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.07  E-value=5.4e-10  Score=88.87  Aligned_cols=107  Identities=21%  Similarity=0.283  Sum_probs=73.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcC---CCCeEEEEcccCCCc----CCCCcee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLDLP----FSNDCFD  127 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~----~~~~~fD  127 (259)
                      ..++.+|||+|||+|..++.++.. +..+|+..|.++ .++.++.+++.++   -.++.+...|+.+..    ....+||
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence            346789999999999999999998 445999999999 9999999998875   234788887775511    2346899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|++..++..               ......+++.+.++|+|+|.+++...
T Consensus       122 ~IlasDv~Y~---------------~~~~~~L~~tl~~ll~~~~~vl~~~~  157 (173)
T PF10294_consen  122 VILASDVLYD---------------EELFEPLVRTLKRLLKPNGKVLLAYK  157 (173)
T ss_dssp             EEEEES--S----------------GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred             EEEEecccch---------------HHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            9999777642               25667889999999999999666543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.05  E-value=5.7e-10  Score=92.23  Aligned_cols=94  Identities=23%  Similarity=0.383  Sum_probs=74.3

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      ...++||+|+|.|..+..++.... +|++.|.|+.|....+++    |+   +++..  .+....+.+||+|.|.++++.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~-~v~aTE~S~~Mr~rL~~k----g~---~vl~~--~~w~~~~~~fDvIscLNvLDR  163 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK-EVYATEASPPMRWRLSKK----GF---TVLDI--DDWQQTDFKFDVISCLNVLDR  163 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc-eEEeecCCHHHHHHHHhC----CC---eEEeh--hhhhccCCceEEEeehhhhhc
Confidence            356899999999999999987755 899999999987766654    44   33322  223223468999999999976


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      .               ..+..+|+.+++.|+|+|++++.
T Consensus       164 c---------------~~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  164 C---------------DRPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             c---------------CCHHHHHHHHHHHhCCCCEEEEE
Confidence            5               67789999999999999999974

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=6.4e-09  Score=91.75  Aligned_cols=126  Identities=21%  Similarity=0.338  Sum_probs=96.8

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCC---eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeE
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGIT---AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDV  128 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~  128 (259)
                      ...++.+|||+++++|.-+.++++...+   .|+++|.++..++.++++++..|+.++.+.+.|...++   ...+.||.
T Consensus       153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~  232 (355)
T COG0144         153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR  232 (355)
T ss_pred             CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence            3468899999999999999999998653   46999999999999999999999988888888876543   22235999


Q ss_pred             EEecce---eeeeeeCCCCCCCCCchhHH----HHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          129 VIEKAT---MEVLFVNSGDPWNPQPETVT----KVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       129 V~~~~~---l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      |++..+   ...+..++...|...+....    -..++|..+.++|||||.|++.+++.
T Consensus       233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~  291 (355)
T COG0144         233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL  291 (355)
T ss_pred             EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence            995422   22334445555765544333    34679999999999999999998864

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=99.04  E-value=4.6e-09  Score=85.41  Aligned_cols=142  Identities=17%  Similarity=0.215  Sum_probs=107.7

Q ss_pred             EEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecceeeeee
Q 025039           62 VLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEVLF  139 (259)
Q Consensus        62 vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~  139 (259)
                      |.|+||.-|.+.++|++.|.. +++++|+++..++.|++++...++.+ +++..+|..+.-.+.+..|+|+..++     
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM-----   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM-----   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC-----
Confidence            689999999999999999987 89999999999999999999998765 99999997663223334899887665     


Q ss_pred             eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEEEEEEEEeCCCC
Q 025039          140 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRS  219 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (259)
                                  +-....++|+.....++....|++.........+.++...+|....+.....++..|....+.++...
T Consensus        76 ------------GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~~~  143 (205)
T PF04816_consen   76 ------------GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGEEK  143 (205)
T ss_dssp             -------------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESSS-
T ss_pred             ------------CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCCCC
Confidence                        33567788888888888777888887777777778888898988888888888888888888776555


Q ss_pred             C
Q 025039          220 S  220 (259)
Q Consensus       220 ~  220 (259)
                      .
T Consensus       144 ~  144 (205)
T PF04816_consen  144 P  144 (205)
T ss_dssp             -
T ss_pred             C
Confidence            4

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.04  E-value=1.3e-09  Score=96.97  Aligned_cols=101  Identities=13%  Similarity=0.165  Sum_probs=78.2

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC-CCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~l~  136 (259)
                      ++.+|||+|||+|.+++.++..+. +|+++|+++.+++.|+++++.++++++++.++|+.+... ...+||+|+++++..
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~  311 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR  311 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcCC-eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence            467999999999999999998775 899999999999999999999888789999999866321 124699999876642


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      -                 ....+++.+. .++|++++++..
T Consensus       312 G-----------------~~~~~l~~l~-~~~p~~ivyvsc  334 (374)
T TIGR02085       312 G-----------------IGKELCDYLS-QMAPKFILYSSC  334 (374)
T ss_pred             C-----------------CcHHHHHHHH-hcCCCeEEEEEe
Confidence            1                 1234445444 378988777653

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.03  E-value=8.2e-10  Score=100.24  Aligned_cols=101  Identities=20%  Similarity=0.324  Sum_probs=78.0

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC----cCCCCceeEEEec
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIEK  132 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~~  132 (259)
                      .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.|++++..+++.+++++.+|+.+.    .....+||+|++.
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d  369 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD  369 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence            4568999999999999999998765 8999999999999999999998888899999998652    1234579999976


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ++-.                 .....+++.+.+ ++|++.+++.
T Consensus       370 PPr~-----------------G~~~~~l~~l~~-l~~~~ivyvs  395 (431)
T TIGR00479       370 PPRK-----------------GCAAEVLRTIIE-LKPERIVYVS  395 (431)
T ss_pred             cCCC-----------------CCCHHHHHHHHh-cCCCEEEEEc
Confidence            5421                 112355555544 7888866654

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.01  E-value=1.8e-09  Score=87.43  Aligned_cols=102  Identities=24%  Similarity=0.360  Sum_probs=74.9

Q ss_pred             cccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEE
Q 025039           53 QPHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVI  130 (259)
Q Consensus        53 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~  130 (259)
                      ...+.++..|+|+.||-|.+++.+++.+.. .|+++|++|.+++.++++++.+++.+ +..+++|..++.. ...+|.|+
T Consensus        96 ~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvi  174 (200)
T PF02475_consen   96 ANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVI  174 (200)
T ss_dssp             HTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEE
T ss_pred             HhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEE
Confidence            344678999999999999999999984433 89999999999999999999999876 8899999988764 67899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                      ++.+-..                   .++|..+.+++++||++-
T Consensus       175 m~lp~~~-------------------~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  175 MNLPESS-------------------LEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             E--TSSG-------------------GGGHHHHHHHEEEEEEEE
T ss_pred             ECChHHH-------------------HHHHHHHHHHhcCCcEEE
Confidence            8654322                   368888999999998863

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.01  E-value=1.8e-09  Score=90.21  Aligned_cols=101  Identities=12%  Similarity=0.091  Sum_probs=82.9

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-c-C-----CCCcee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-P-F-----SNDCFD  127 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~-~-----~~~~fD  127 (259)
                      +..+|||+|+++|..+++++...+ . +++.+|.+++..+.|+++++..|+.+ |+++.+++.+. + +     ..++||
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD  158 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD  158 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence            567999999999999999987632 3 89999999999999999999998754 99999988662 2 1     125899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      +|+.    ++              .......+++.+.++|+|||++++-
T Consensus       159 ~iFi----Da--------------dK~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        159 FIFV----DA--------------DKDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             EEEe----cC--------------CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence            9994    32              3456778999999999999998873

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=5.3e-10  Score=83.87  Aligned_cols=79  Identities=20%  Similarity=0.331  Sum_probs=69.4

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      +|++++|+|||+|.+.....-.+...|+|+|+++++++.+.+|+....+ ++.+.+.|+.++.+..+.||.++.+++|..
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g~fDtaviNppFGT  126 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGGIFDTAVINPPFGT  126 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCCeEeeEEecCCCCc
Confidence            6899999999999999777666666899999999999999999988776 578999999998777889999999988753

>PRK03612 spermidine synthase; Provisional

Probab=98.98  E-value=2.2e-09  Score=99.37  Aligned_cols=111  Identities=23%  Similarity=0.251  Sum_probs=80.4

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHH--Hhhc-----CCCCeEEEEcccCCC-cCCCCcee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQER--LLLK-----GYKEVKVLEADMLDL-PFSNDCFD  127 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~--~~~~-----~~~~v~~~~~d~~~~-~~~~~~fD  127 (259)
                      +++.+|||+|||+|..+..+++... .+++++|+++++++.++++  +...     .-++++++.+|..+. ....++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            4678999999999999999988754 4999999999999999984  2211     124688999998763 22346899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +|+++....         +.+.+ ..--..++++.++++|+|||++++..
T Consensus       376 vIi~D~~~~---------~~~~~-~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        376 VIIVDLPDP---------SNPAL-GKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             EEEEeCCCC---------CCcch-hccchHHHHHHHHHhcCCCeEEEEec
Confidence            999864321         11100 00112578999999999999999854

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.97  E-value=4e-08  Score=77.95  Aligned_cols=118  Identities=21%  Similarity=0.266  Sum_probs=87.0

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCC-c-C-CC
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-F-SN  123 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-~-~~  123 (259)
                      +..++...--.+.++||+.+|+|.+++..+++|..+++.+|.+.+++...++|++..+.. +..++..|.... . . ..
T Consensus        33 lFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~  112 (187)
T COG0742          33 LFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR  112 (187)
T ss_pred             HHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC
Confidence            444555421268999999999999999999999989999999999999999999888854 478888887742 1 1 12


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHH--HHhcccCCcEEEEEecC
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEG--VHRVLKPDGLFISVSFG  179 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~~~~~~  179 (259)
                      +.||+|+..++++.              +.-+....+..  -..+|+|+|.+++-...
T Consensus       113 ~~FDlVflDPPy~~--------------~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~  156 (187)
T COG0742         113 EPFDLVFLDPPYAK--------------GLLDKELALLLLEENGWLKPGALIVVEHDK  156 (187)
T ss_pred             CcccEEEeCCCCcc--------------chhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence            35999999888752              11222333333  45789999999986443

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.96  E-value=2.6e-09  Score=91.05  Aligned_cols=77  Identities=21%  Similarity=0.311  Sum_probs=64.5

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++..   +++.++++|+.++++++-.+|.|+++.++
T Consensus        40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~vv~NlPY  115 (272)
T PRK00274         40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSELQPLKVVANLPY  115 (272)
T ss_pred             CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHcCcceEEEeCCc
Confidence            35678999999999999999999987 999999999999999987743   47899999998876543225888888776


Q ss_pred             e
Q 025039          136 E  136 (259)
Q Consensus       136 ~  136 (259)
                      .
T Consensus       116 ~  116 (272)
T PRK00274        116 N  116 (272)
T ss_pred             c
Confidence            4

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.96  E-value=5.6e-09  Score=88.39  Aligned_cols=76  Identities=21%  Similarity=0.359  Sum_probs=65.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++..  .+++.++++|+.+++++  .||.|+++.++
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy  101 (258)
T PRK14896         27 DTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP--EFNKVVSNLPY  101 (258)
T ss_pred             CCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch--hceEEEEcCCc
Confidence            45678999999999999999999965 899999999999999998764  34799999999887654  48999998876


Q ss_pred             e
Q 025039          136 E  136 (259)
Q Consensus       136 ~  136 (259)
                      +
T Consensus       102 ~  102 (258)
T PRK14896        102 Q  102 (258)
T ss_pred             c
Confidence            4

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.95  E-value=2.8e-09  Score=90.87  Aligned_cols=105  Identities=18%  Similarity=0.266  Sum_probs=79.5

Q ss_pred             CCcEEEEcCCCCc----chHHHHhcC----CC-eEEEeeCCHHHHHHHHHHH------------------hh-----cC-
Q 025039           59 NSSVLELGCGNSR----LSEGLYNDG----IT-AITCIDLSAVAVEKMQERL------------------LL-----KG-  105 (259)
Q Consensus        59 ~~~vLDiGcG~G~----~~~~l~~~~----~~-~v~~vD~s~~~~~~a~~~~------------------~~-----~~-  105 (259)
                      .-+|+..||+||.    +++.+.+.+    .. +|+|+|+|+.+++.|++..                  ..     .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            4799999999996    445555531    12 7999999999999998742                  00     00 


Q ss_pred             ------C-CCeEEEEcccCCCcCC-CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          106 ------Y-KEVKVLEADMLDLPFS-NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       106 ------~-~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                            + ..|+|...|+.+.+++ .+.||+|+|.+++.++             +.+...+++..+.+.|+|||+|++-
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-------------~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-------------DKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-------------CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                  1 2367888888774432 5789999999998777             5678899999999999999988753

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.93  E-value=3.8e-09  Score=95.63  Aligned_cols=102  Identities=25%  Similarity=0.462  Sum_probs=75.9

Q ss_pred             CCcEEEEcCCCCcchHHHHhcC-----CCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEec
Q 025039           59 NSSVLELGCGNSRLSEGLYNDG-----ITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      +..|||+|||+|.++...++++     ..+|+++|-++.++..++++++.+++. .|+++.+|+.++..+ .++|+|++-
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE  265 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE  265 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence            5689999999999998887775     239999999999998888877777774 499999999998755 589999974


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                      .. ..+    +        .-+...+.|....+.|||||+++
T Consensus       266 lL-Gsf----g--------~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  266 LL-GSF----G--------DNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             ---BTT----B--------TTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             cc-CCc----c--------ccccCHHHHHHHHhhcCCCCEEe
Confidence            21 111    1        11345578888999999999987

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.93  E-value=5.2e-09  Score=96.50  Aligned_cols=112  Identities=13%  Similarity=0.102  Sum_probs=89.0

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEecce
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKAT  134 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~  134 (259)
                      .+..+||||||.|..+..+|...+. .++|+|+....+..+.++....++.|+.+++.|+..+.  ++++++|.|+.   
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i---  423 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI---  423 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE---
Confidence            3568999999999999999999887 99999999999999999888888888888887764322  45566666664   


Q ss_pred             eeeeeeCCCCCCCCCchhHH--HHHHHHHHHHhcccCCcEEEEEec
Q 025039          135 MEVLFVNSGDPWNPQPETVT--KVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                            .+.+||-+..+...  ....+++.+.++|+|||.+.+.+-
T Consensus       424 ------~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD  463 (506)
T PRK01544        424 ------LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD  463 (506)
T ss_pred             ------ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence                  34678865433333  346899999999999999998764

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.92  E-value=3.4e-09  Score=86.98  Aligned_cols=101  Identities=20%  Similarity=0.415  Sum_probs=76.0

Q ss_pred             cchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC
Q 025039           44 DYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN  123 (259)
Q Consensus        44 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  123 (259)
                      +...+.+.+.. .+....|.|+|||.+.++.    .-...|..+|+.+               .+-+++..|+.+.|+++
T Consensus       167 Pld~ii~~ik~-r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d  226 (325)
T KOG3045|consen  167 PLDVIIRKIKR-RPKNIVIADFGCGEAKIAS----SERHKVHSFDLVA---------------VNERVIACDMRNVPLED  226 (325)
T ss_pred             hHHHHHHHHHh-CcCceEEEecccchhhhhh----ccccceeeeeeec---------------CCCceeeccccCCcCcc
Confidence            34455555553 3456789999999998875    2223899999864               24577888999999999


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++.|++++--++                .-.++..++.++.|+|+|||.+++.+...
T Consensus       227 ~svDvaV~CLSL----------------Mgtn~~df~kEa~RiLk~gG~l~IAEv~S  267 (325)
T KOG3045|consen  227 ESVDVAVFCLSL----------------MGTNLADFIKEANRILKPGGLLYIAEVKS  267 (325)
T ss_pred             CcccEEEeeHhh----------------hcccHHHHHHHHHHHhccCceEEEEehhh
Confidence            999998753322                22578899999999999999999987643

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.92  E-value=8e-09  Score=89.40  Aligned_cols=81  Identities=16%  Similarity=0.217  Sum_probs=61.9

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhc-CCCC-eEEEE-cccCCC----cCCCCceeEE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLK-GYKE-VKVLE-ADMLDL----PFSNDCFDVV  129 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~-~~~~-v~~~~-~d~~~~----~~~~~~fD~V  129 (259)
                      ++.++||||||+|.+...++...+. +++|+|+++.+++.|+++++.+ ++.+ +.+.. .+...+    ..+.+.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            4578999999999888777766444 9999999999999999999988 6754 76653 232221    1235689999


Q ss_pred             Eecceeeee
Q 025039          130 IEKATMEVL  138 (259)
Q Consensus       130 ~~~~~l~~~  138 (259)
                      +|+++|+.-
T Consensus       194 vcNPPf~~s  202 (321)
T PRK11727        194 LCNPPFHAS  202 (321)
T ss_pred             EeCCCCcCc
Confidence            999998643

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.92  E-value=1.6e-08  Score=84.73  Aligned_cols=108  Identities=20%  Similarity=0.300  Sum_probs=89.3

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC---CeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcccCCCc---CCCCceeEEE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI---TAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDLP---FSNDCFDVVI  130 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~---~~~~~fD~V~  130 (259)
                      .+-+||||+||.|+.........+   .++...|+|+..++..++.++.+|+.++ +|.++|+++..   .-.-..++++
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i  214 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI  214 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence            567999999999999887777644   3899999999999999999999999885 99999998732   1233579999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .++.++.+            .+-....+.+..+..++.|||+++...
T Consensus       215 VsGL~ElF------------~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  215 VSGLYELF------------PDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             EecchhhC------------CcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence            99988766            233456778999999999999999864

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.91  E-value=9.8e-09  Score=82.09  Aligned_cols=102  Identities=23%  Similarity=0.302  Sum_probs=83.1

Q ss_pred             cCCCCC-cEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           55 HIKPNS-SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~-~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      .++... +++|+|+|.|--++.++-..+. +++.+|.+.+-+...+......++++++++++.+.+ ......||+|++.
T Consensus        44 ~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aR  122 (184)
T PF02527_consen   44 FLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTAR  122 (184)
T ss_dssp             CS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEE
T ss_pred             hhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEee
Confidence            344333 8999999999999999888877 899999999999999999999999999999998877 3345789999987


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      .+-                   ....++.-+...+++||.+++.
T Consensus       123 Av~-------------------~l~~l~~~~~~~l~~~G~~l~~  147 (184)
T PF02527_consen  123 AVA-------------------PLDKLLELARPLLKPGGRLLAY  147 (184)
T ss_dssp             SSS-------------------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhc-------------------CHHHHHHHHHHhcCCCCEEEEE
Confidence            653                   4457888999999999999976

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.90  E-value=8.6e-09  Score=88.57  Aligned_cols=79  Identities=28%  Similarity=0.503  Sum_probs=67.4

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC-CCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+ .++++++++|+.+..+  ..||+|+++.+
T Consensus        34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNlP  110 (294)
T PTZ00338         34 IKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANVP  110 (294)
T ss_pred             CCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecCC
Confidence            45778999999999999999999876 89999999999999999987655 3569999999987654  36899999877


Q ss_pred             eee
Q 025039          135 MEV  137 (259)
Q Consensus       135 l~~  137 (259)
                      ++.
T Consensus       111 Y~I  113 (294)
T PTZ00338        111 YQI  113 (294)
T ss_pred             ccc
Confidence            753

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.89  E-value=9.2e-09  Score=87.39  Aligned_cols=102  Identities=19%  Similarity=0.302  Sum_probs=81.1

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .++.|||+|||+|.++.+.+.+|..+|+++|-| +|.+.|++.++.+++.+ |.++.+.+.++.++ ++.|+|++-++-.
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~  254 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY  254 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence            578899999999999999999999899999965 68999999888887755 99999999887765 6899999865432


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                      .++            +.+.++.++ .+++.|+|+|.++
T Consensus       255 mL~------------NERMLEsYl-~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  255 MLV------------NERMLESYL-HARKWLKPNGKMF  279 (517)
T ss_pred             hhh------------hHHHHHHHH-HHHhhcCCCCccc
Confidence            221            223444444 3569999999987

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.87  E-value=2.8e-08  Score=83.79  Aligned_cols=106  Identities=19%  Similarity=0.250  Sum_probs=80.3

Q ss_pred             CCCcEEEEcCCCCc----chHHHHhcC-----CC-eEEEeeCCHHHHHHHHHHHhh-----cC-----------------
Q 025039           58 PNSSVLELGCGNSR----LSEGLYNDG-----IT-AITCIDLSAVAVEKMQERLLL-----KG-----------------  105 (259)
Q Consensus        58 ~~~~vLDiGcG~G~----~~~~l~~~~-----~~-~v~~vD~s~~~~~~a~~~~~~-----~~-----------------  105 (259)
                      ..-+|+-.||++|.    +++.+.+.+     .. +|+|+|+|..+++.|++-.=.     .+                 
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            36789999999996    555555554     23 899999999999999762200     00                 


Q ss_pred             ------C-CCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          106 ------Y-KEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       106 ------~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                            + ..|.|...|+.+-++..+.||+|+|.+++-++             +.+...+++..++..|+|||+|++-
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-------------d~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-------------DEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee-------------CHHHHHHHHHHHHHHhCCCCEEEEc
Confidence                  1 23666677776644234679999999999887             6688899999999999999999973

>PLN02823 spermine synthase

Probab=98.87  E-value=1.4e-08  Score=88.57  Aligned_cols=111  Identities=18%  Similarity=0.296  Sum_probs=79.2

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcC-CCeEEEeeCCHHHHHHHHHHHhhcC----CCCeEEEEcccCCC-cCCCCceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL-PFSNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~-~~~~~~fD~V~  130 (259)
                      +.+.+||.+|+|.|..+..+++.. ..+++.+|+++++++.+++.+....    -++++++.+|.... ....++||+|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            356799999999999999888864 3489999999999999999875431    25689999998763 33356899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHH-HHHhcccCCcEEEEE
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLE-GVHRVLKPDGLFISV  176 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~  176 (259)
                      +... +        ++...+...---.++++ .+.+.|+|||++++-
T Consensus       182 ~D~~-d--------p~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        182 GDLA-D--------PVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             ecCC-C--------ccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            6521 1        11000000001246787 889999999998864

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.87  E-value=3.6e-08  Score=83.19  Aligned_cols=76  Identities=26%  Similarity=0.432  Sum_probs=63.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCcee---EEEec
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFD---VVIEK  132 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD---~V~~~  132 (259)
                      ..++.+|||+|||+|.++..+++.+. .++++|+++.+++.+++++..  .++++++++|+.+.+++  .+|   +|+++
T Consensus        27 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~--~~d~~~~vvsN  101 (253)
T TIGR00755        27 VLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP--DFPKQLKVVSN  101 (253)
T ss_pred             CCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh--HcCCcceEEEc
Confidence            34678999999999999999999987 799999999999999988753  34789999999887654  466   77877


Q ss_pred             ceee
Q 025039          133 ATME  136 (259)
Q Consensus       133 ~~l~  136 (259)
                      .+++
T Consensus       102 lPy~  105 (253)
T TIGR00755       102 LPYN  105 (253)
T ss_pred             CChh
Confidence            6653

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.85  E-value=9.3e-09  Score=91.45  Aligned_cols=99  Identities=25%  Similarity=0.279  Sum_probs=79.7

Q ss_pred             CCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           59 NSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      +.+|||++||+|..++.++.. +..+|+++|+++.+++.++++++.++++++.+.++|+..+......||+|++.+.   
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~---  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF---  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence            468999999999999999765 4348999999999999999999999887788889998663211357999997542   


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                                      .....+++.+.+.+++||++++.
T Consensus       135 ----------------Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 ----------------GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             ----------------CCcHHHHHHHHHHhcCCCEEEEE
Confidence                            12246788878889999999986

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.84  E-value=3.1e-08  Score=85.90  Aligned_cols=109  Identities=20%  Similarity=0.231  Sum_probs=93.6

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecc
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      ...+|.+|||+-||-|.+++.++..|..+|+++|++|.+++.++++++.+++.+ +..+++|........+.+|-|+++.
T Consensus       185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~  264 (341)
T COG2520         185 LVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL  264 (341)
T ss_pred             hhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence            345699999999999999999999988679999999999999999999999987 8899999998764447899999865


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      +-                   ...+++..+.+.+++||.+-+.++.+..
T Consensus       265 p~-------------------~a~~fl~~A~~~~k~~g~iHyy~~~~e~  294 (341)
T COG2520         265 PK-------------------SAHEFLPLALELLKDGGIIHYYEFVPED  294 (341)
T ss_pred             CC-------------------cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence            43                   3347888999999999999998876544

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.7e-08  Score=80.53  Aligned_cols=109  Identities=19%  Similarity=0.224  Sum_probs=84.6

Q ss_pred             HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhc-CCC--eEEEeeCCHHHHHHHHHHHhhcC----------CCCeEEEE
Q 025039           47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYND-GIT--AITCIDLSAVAVEKMQERLLLKG----------YKEVKVLE  113 (259)
Q Consensus        47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~--~v~~vD~s~~~~~~a~~~~~~~~----------~~~v~~~~  113 (259)
                      .....|..++.|+.++||+|+|+|.++..++.. +..  ...|+|.-++.++.+++++...-          .....+..
T Consensus        71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv  150 (237)
T KOG1661|consen   71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV  150 (237)
T ss_pred             HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence            345566677889999999999999999988865 332  45999999999999999875442          23467788


Q ss_pred             cccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          114 ADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       114 ~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      +|......+..+||.|.+....                     .++.+++...|+|||.+++-
T Consensus       151 GDgr~g~~e~a~YDaIhvGAaa---------------------~~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  151 GDGRKGYAEQAPYDAIHVGAAA---------------------SELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             CCccccCCccCCcceEEEccCc---------------------cccHHHHHHhhccCCeEEEe
Confidence            9988876667899999986432                     24567777889999999984

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.81  E-value=1.5e-08  Score=89.40  Aligned_cols=59  Identities=19%  Similarity=0.314  Sum_probs=53.6

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD  118 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~  118 (259)
                      +.+|||++||+|.+++.+++... +|+++|+++.+++.+++++..+++.+++++.+|+.+
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~~-~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNFR-RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            35799999999999998887765 999999999999999999999998889999999866

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.80  E-value=1.8e-08  Score=89.27  Aligned_cols=75  Identities=17%  Similarity=0.321  Sum_probs=62.2

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-c-CC--------------
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-P-FS--------------  122 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~-~~--------------  122 (259)
                      +.+|||++||+|.+++.+++... +|+++|+++.+++.+++++..+++++++++++|+.+. + +.              
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~~~-~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~  285 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARNFR-RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK  285 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence            35799999999999998887755 9999999999999999999999988899999998662 1 10              


Q ss_pred             CCceeEEEecce
Q 025039          123 NDCFDVVIEKAT  134 (259)
Q Consensus       123 ~~~fD~V~~~~~  134 (259)
                      ...||+|+..++
T Consensus       286 ~~~~D~v~lDPP  297 (362)
T PRK05031        286 SYNFSTIFVDPP  297 (362)
T ss_pred             CCCCCEEEECCC
Confidence            125899997655

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.79  E-value=1.1e-07  Score=82.44  Aligned_cols=138  Identities=18%  Similarity=0.196  Sum_probs=93.2

Q ss_pred             ccchhhhcCCCCcccccccchH---HHHhhcccCCCCCcEEEEcCCCCcchHHHHhc----CCC-eEEEeeCCHHHHHHH
Q 025039           26 PHYWDERFSDEEHYEWLKDYSH---FRHLVQPHIKPNSSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKM   97 (259)
Q Consensus        26 ~~~w~~~~~~~~~~~w~~~~~~---~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a   97 (259)
                      .+.|+++...+..+-...+..-   ....+...+.++..++|+|||+|.-+..|.+.    +.. .++++|+|..+++.+
T Consensus        41 s~LFe~It~lpEYYptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a  120 (319)
T TIGR03439        41 LKLFEEITYSPEYYLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRT  120 (319)
T ss_pred             HHHHHHHHcCCccCChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHH
Confidence            5567777665444332222221   22344455677889999999999977665553    222 799999999999999


Q ss_pred             HHHHhhcCCCCeEE--EEcccCCC----cC--CCCceeEEEec-ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHh-cc
Q 025039           98 QERLLLKGYKEVKV--LEADMLDL----PF--SNDCFDVVIEK-ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHR-VL  167 (259)
Q Consensus        98 ~~~~~~~~~~~v~~--~~~d~~~~----~~--~~~~fD~V~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~L  167 (259)
                      .+++....++.+.+  +++|..+.    +.  ......+++.. .++..+             .......+|+++++ .|
T Consensus       121 ~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf-------------~~~ea~~fL~~~~~~~l  187 (319)
T TIGR03439       121 LAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNF-------------SRPEAAAFLAGFLATAL  187 (319)
T ss_pred             HHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCC-------------CHHHHHHHHHHHHHhhC
Confidence            99988555666554  78887652    21  12235666654 355444             55788899999999 99


Q ss_pred             cCCcEEEEE
Q 025039          168 KPDGLFISV  176 (259)
Q Consensus       168 kpgG~l~~~  176 (259)
                      +|||.|++-
T Consensus       188 ~~~d~lLiG  196 (319)
T TIGR03439       188 SPSDSFLIG  196 (319)
T ss_pred             CCCCEEEEe
Confidence            999999883

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.77  E-value=1.7e-08  Score=83.34  Aligned_cols=89  Identities=15%  Similarity=0.276  Sum_probs=59.9

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHH-HHHHHhhcCCCCe-EEEEcccCCCc-----CCCCceeEEE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEK-MQERLLLKGYKEV-KVLEADMLDLP-----FSNDCFDVVI  130 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~-a~~~~~~~~~~~v-~~~~~d~~~~~-----~~~~~fD~V~  130 (259)
                      ++.+|||+|||+|.++..+++.|..+|+++|+++.++.. .+++      +++ .+...|+..+.     ..-..+|+++
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~------~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsf  148 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD------ERVKVLERTNIRYVTPADIFPDFATFDVSF  148 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC------CCeeEeecCCcccCCHhHcCCCceeeeEEE
Confidence            677999999999999999999987699999999987765 3332      122 22333443222     1112456555


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ++.                       ..++..+.++|+| |.+++.
T Consensus       149 iS~-----------------------~~~l~~i~~~l~~-~~~~~L  170 (228)
T TIGR00478       149 ISL-----------------------ISILPELDLLLNP-NDLTLL  170 (228)
T ss_pred             eeh-----------------------HhHHHHHHHHhCc-CeEEEE
Confidence            321                       2368889999999 776654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK04148 hypothetical protein; Provisional

Probab=98.77  E-value=1.4e-07  Score=71.04  Aligned_cols=95  Identities=16%  Similarity=0.264  Sum_probs=70.3

Q ss_pred             CCCcEEEEcCCCCc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC-CCceeEEEeccee
Q 025039           58 PNSSVLELGCGNSR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS-NDCFDVVIEKATM  135 (259)
Q Consensus        58 ~~~~vLDiGcG~G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l  135 (259)
                      ++.+|||+|||+|. .+..|++.|. +|+++|+++.+++.++++       .+.+...|+++.... -..+|+|++..  
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~~a~liysir--   85 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYKNAKLIYSIR--   85 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHhcCCEEEEeC--
Confidence            45789999999996 8889998888 999999999999988775       368889999885432 24699999743  


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                                      ...+++..+-++++.+  |.-+++..++.
T Consensus        86 ----------------pp~el~~~~~~la~~~--~~~~~i~~l~~  112 (134)
T PRK04148         86 ----------------PPRDLQPFILELAKKI--NVPLIIKPLSG  112 (134)
T ss_pred             ----------------CCHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence                            2355555655666544  45566655544

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.76  E-value=1.3e-08  Score=82.50  Aligned_cols=111  Identities=15%  Similarity=0.204  Sum_probs=84.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEcccCCC--cCCCCceeEEEe
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDL--PFSNDCFDVVIE  131 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~--~~~~~~fD~V~~  131 (259)
                      .+++.+|||.|.|-|..++..+++|...|+.+|.++..++.|.-|--..++-  .+.++.+|..+.  .+++++||+|+-
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH  211 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH  211 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence            3568999999999999999999999889999999999999987664333322  368889998774  378899999996


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .++=-.+            .+.-=..++..+++++|+|||.++-..-
T Consensus       212 DPPRfS~------------AgeLYseefY~El~RiLkrgGrlFHYvG  246 (287)
T COG2521         212 DPPRFSL------------AGELYSEEFYRELYRILKRGGRLFHYVG  246 (287)
T ss_pred             CCCccch------------hhhHhHHHHHHHHHHHcCcCCcEEEEeC
Confidence            5431111            1111235789999999999999997643

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.71  E-value=1.4e-08  Score=84.83  Aligned_cols=131  Identities=23%  Similarity=0.329  Sum_probs=99.9

Q ss_pred             ccchhhhcCCCC---cccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHH
Q 025039           26 PHYWDERFSDEE---HYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERL  101 (259)
Q Consensus        26 ~~~w~~~~~~~~---~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~  101 (259)
                      ++|...+|..-.   ....+..|+....++.. .+.+..++|+|||.|..+..    .+. .++|.|++...+..+++. 
T Consensus        11 qeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~-~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~-   84 (293)
T KOG1331|consen   11 QEYVHSIYDKIATHFSATRAAPWPMVRQFLDS-QPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS-   84 (293)
T ss_pred             HHHhHHHHHHhhhhccccccCccHHHHHHHhc-cCCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccC-
Confidence            456666664421   11234557777787774 44588999999999976642    133 689999999988888764 


Q ss_pred             hhcCCCCe-EEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          102 LLKGYKEV-KVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       102 ~~~~~~~v-~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                            +. .....|+..+|+...+||.+++..++||+            .......+++++..+.++|||..++..++.
T Consensus        85 ------~~~~~~~ad~l~~p~~~~s~d~~lsiavihhl------------sT~~RR~~~l~e~~r~lrpgg~~lvyvwa~  146 (293)
T KOG1331|consen   85 ------GGDNVCRADALKLPFREESFDAALSIAVIHHL------------STRERRERALEELLRVLRPGGNALVYVWAL  146 (293)
T ss_pred             ------CCceeehhhhhcCCCCCCccccchhhhhhhhh------------hhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence                  33 56778999999999999999999999998            356778899999999999999999876653

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.71  E-value=2e-07  Score=81.49  Aligned_cols=115  Identities=17%  Similarity=0.170  Sum_probs=89.7

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC----------------------------------------eEEEeeCCHHHHHH
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT----------------------------------------AITCIDLSAVAVEK   96 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~----------------------------------------~v~~vD~s~~~~~~   96 (259)
                      .++..++|.-||+|.+++..+..+.+                                        .++|+|+++.+++.
T Consensus       190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~  269 (381)
T COG0116         190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG  269 (381)
T ss_pred             CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence            45678999999999999999887641                                        27799999999999


Q ss_pred             HHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHH-HHHHHHHHHHhcccCCcEEE
Q 025039           97 MQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVT-KVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus        97 a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~  174 (259)
                      |+.|+...|+.+ |.|.++|+..+..+-+.+|+|+||+++..-+.+        +.... ....+.+.+++.++--+.++
T Consensus       270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~--------~~~v~~LY~~fg~~lk~~~~~ws~~v  341 (381)
T COG0116         270 AKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGS--------EALVAKLYREFGRTLKRLLAGWSRYV  341 (381)
T ss_pred             HHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCC--------hhhHHHHHHHHHHHHHHHhcCCceEE
Confidence            999999999876 999999999887443789999999988533211        01223 34566677778888888888


Q ss_pred             EEecC
Q 025039          175 SVSFG  179 (259)
Q Consensus       175 ~~~~~  179 (259)
                      +++..
T Consensus       342 ~tt~e  346 (381)
T COG0116         342 FTTSE  346 (381)
T ss_pred             EEccH
Confidence            87643

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.68  E-value=1.8e-08  Score=81.44  Aligned_cols=105  Identities=20%  Similarity=0.349  Sum_probs=85.3

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      +....++|+|||-|....++...+..+++-+|.|-.|++.++.. ...++ .+....+|-..+++.++++|+|+++..+|
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslH  148 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLH  148 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce-EEEEEecchhcccccccchhhhhhhhhhh
Confidence            34568999999999999999999887999999999999998764 22222 24455677777889999999999988887


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ..               .+++..+.+++..|||+|.++...+
T Consensus       149 W~---------------NdLPg~m~~ck~~lKPDg~Fiasml  175 (325)
T KOG2940|consen  149 WT---------------NDLPGSMIQCKLALKPDGLFIASML  175 (325)
T ss_pred             hh---------------ccCchHHHHHHHhcCCCccchhHHh
Confidence            55               5667788899999999999997544

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.66  E-value=3.8e-08  Score=84.30  Aligned_cols=124  Identities=23%  Similarity=0.314  Sum_probs=89.7

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEe
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIE  131 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~  131 (259)
                      ..++..|||+++++|.-+.++++...  ..+++.|+++..+...++++...|+.++.+...|.....  .....||.|+.
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv  162 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV  162 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence            45788999999999999999988754  299999999999999999999999988888888876642  22346999995


Q ss_pred             cce---eeeeeeCCCCCCCCCchhH----HHHHHHHHHHHhcc----cCCcEEEEEecC
Q 025039          132 KAT---MEVLFVNSGDPWNPQPETV----TKVMAMLEGVHRVL----KPDGLFISVSFG  179 (259)
Q Consensus       132 ~~~---l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L----kpgG~l~~~~~~  179 (259)
                      ..+   ...+-.++...|...++..    ....++|+.+.+.+    ||||++++.+++
T Consensus       163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS  221 (283)
T PF01189_consen  163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS  221 (283)
T ss_dssp             ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred             CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence            322   1111112222232222222    23457899999999    999999999875

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.66  E-value=3.2e-07  Score=74.47  Aligned_cols=101  Identities=19%  Similarity=0.194  Sum_probs=84.1

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-c-----CCCCceeE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-P-----FSNDCFDV  128 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~-----~~~~~fD~  128 (259)
                      .++++||+|.=||..++.++..-+.  +|+++|+++...+.+.+..+..++.. |+++++...+. .     .+.++||+
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf  152 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF  152 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence            5789999999999999999888655  99999999999999999988888866 99999887651 1     24578999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ++    +++.              ..+.....+++.+++|+||++++-
T Consensus       153 aF----vDad--------------K~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  153 AF----VDAD--------------KDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             EE----Eccc--------------hHHHHHHHHHHHhhcccccEEEEe
Confidence            99    4443              355668999999999999999984

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.65  E-value=1.1e-07  Score=84.31  Aligned_cols=98  Identities=12%  Similarity=0.226  Sum_probs=81.0

Q ss_pred             CcEEEEcCCCCcchHHHHhc--CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-CCCCceeEEEecceee
Q 025039           60 SSVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKATME  136 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l~  136 (259)
                      .+|||+.||+|..++.++..  |..+|+++|+++.+++.+++|++.++..++.+.++|+..+- .....||+|...+ +.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG  124 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG  124 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence            58999999999999999987  45599999999999999999999988777889999887642 1235799998644 31


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                                        ....+++.+.+.+++||.+++.
T Consensus       125 ------------------s~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       125 ------------------TPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             ------------------CcHHHHHHHHHhcccCCEEEEE
Confidence                              2236899999999999999986

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.65  E-value=4.5e-08  Score=76.34  Aligned_cols=74  Identities=19%  Similarity=0.271  Sum_probs=55.4

Q ss_pred             cEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCc--CCCCc-eeEEEeccee
Q 025039           61 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLP--FSNDC-FDVVIEKATM  135 (259)
Q Consensus        61 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~--~~~~~-fD~V~~~~~l  135 (259)
                      .|+|+.||.|..++.+++.+. +|+++|+++..++.|+.++...|+. ++.++++|+.++.  ..... +|+|+++++.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW   79 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW   79 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred             EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence            699999999999999999976 8999999999999999999999975 5999999998743  22222 8999987665

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=5.9e-07  Score=74.50  Aligned_cols=125  Identities=23%  Similarity=0.385  Sum_probs=90.6

Q ss_pred             ccchhhhcCCCCcccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhh
Q 025039           26 PHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLL  103 (259)
Q Consensus        26 ~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~  103 (259)
                      .|-|.........+-|-.....+...+.  +.||.+|||-|.|+|.++.++++. ++. +++.+|+.+...+.|++-++.
T Consensus        75 pELWTl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~  152 (314)
T KOG2915|consen   75 PELWTLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFRE  152 (314)
T ss_pred             hHHhhhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHH
Confidence            5556665555444444444445555544  679999999999999999999987 444 899999999999999999999


Q ss_pred             cCCCC-eEEEEcccCCCcC--CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcE
Q 025039          104 KGYKE-VKVLEADMLDLPF--SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL  172 (259)
Q Consensus       104 ~~~~~-v~~~~~d~~~~~~--~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  172 (259)
                      .++++ +++.+.|+....+  +...+|.|+.         |...||           .++--+.++||.+|.
T Consensus       153 hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL---------DlPaPw-----------~AiPha~~~lk~~g~  204 (314)
T KOG2915|consen  153 HGIGDNVTVTHRDVCGSGFLIKSLKADAVFL---------DLPAPW-----------EAIPHAAKILKDEGG  204 (314)
T ss_pred             hCCCcceEEEEeecccCCccccccccceEEE---------cCCChh-----------hhhhhhHHHhhhcCc
Confidence            99865 8999999877443  2355676663         334555           345556667887774

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.62  E-value=1.7e-07  Score=77.63  Aligned_cols=80  Identities=23%  Similarity=0.417  Sum_probs=68.7

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEec
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      ..++++..|||+|.|||.++..+.+.|. +|+++|+++.|+....++.......+ .+++.+|+.+.+++  .||.++++
T Consensus        54 a~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN  130 (315)
T KOG0820|consen   54 ADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSN  130 (315)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeecc
Confidence            4567899999999999999999999998 99999999999999999987554434 88999999887654  69999987


Q ss_pred             ceee
Q 025039          133 ATME  136 (259)
Q Consensus       133 ~~l~  136 (259)
                      -++.
T Consensus       131 lPyq  134 (315)
T KOG0820|consen  131 LPYQ  134 (315)
T ss_pred             CCcc
Confidence            6654

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.62  E-value=7.2e-07  Score=72.05  Aligned_cols=148  Identities=18%  Similarity=0.152  Sum_probs=115.9

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEe
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIE  131 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~  131 (259)
                      .+++.+.++.|+||--|++..++.+.+.. .+++.|+++..++.|.+++...+... +++..+|....-..+..+|+|+.
T Consensus        12 ~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivI   91 (226)
T COG2384          12 NLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVI   91 (226)
T ss_pred             HHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEE
Confidence            34556677999999999999999999887 99999999999999999999888754 88888888653234457999987


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEEEEE
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFY  211 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (259)
                      .++                 +-....++|++-...|+.--.+++..-.++...+.++....|....+....++++.|...
T Consensus        92 AGM-----------------GG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~ileE~~kiYEIl  154 (226)
T COG2384          92 AGM-----------------GGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAETILEEDGKIYEIL  154 (226)
T ss_pred             eCC-----------------cHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeeeeecccCeEEEEE
Confidence            664                 224667888888888875556776555555556667777778777788888888999988


Q ss_pred             EEEeCCC
Q 025039          212 ILRKGKR  218 (259)
Q Consensus       212 ~~~~~~~  218 (259)
                      ++.++..
T Consensus       155 v~e~~~~  161 (226)
T COG2384         155 VVEKSSK  161 (226)
T ss_pred             EEecCCc
Confidence            8887753

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.62  E-value=2.7e-07  Score=75.16  Aligned_cols=98  Identities=19%  Similarity=0.224  Sum_probs=82.4

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCc-eeEEEecceee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDC-FDVVIEKATME  136 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~V~~~~~l~  136 (259)
                      +.+++|+|+|.|.=++.++-..+. +++.+|...+.+...+.-....+++|++++++.+.++... .. ||+|++.++  
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~-~~~~D~vtsRAv--  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE-KKQYDVVTSRAV--  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc-cccCcEEEeehc--
Confidence            689999999999999988866565 8999999999999999999999998999999988886522 23 999998654  


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                                       ..+..+++-...++++||.+++.
T Consensus       145 -----------------a~L~~l~e~~~pllk~~g~~~~~  167 (215)
T COG0357         145 -----------------ASLNVLLELCLPLLKVGGGFLAY  167 (215)
T ss_pred             -----------------cchHHHHHHHHHhcccCCcchhh
Confidence                             35567888899999999988653

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=7.7e-07  Score=74.45  Aligned_cols=79  Identities=27%  Similarity=0.435  Sum_probs=67.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCC-ceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSND-CFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~fD~V~~~~~  134 (259)
                      +.++..|||||+|.|.++..|++.+. +|+++|+++.+++..++++..  ..+++++.+|+.+..++.- .++.|+++-+
T Consensus        28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~--~~n~~vi~~DaLk~d~~~l~~~~~vVaNlP  104 (259)
T COG0030          28 ISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP--YDNLTVINGDALKFDFPSLAQPYKVVANLP  104 (259)
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc--ccceEEEeCchhcCcchhhcCCCEEEEcCC
Confidence            45678999999999999999999998 899999999999999998762  3479999999998876532 6889999877


Q ss_pred             eee
Q 025039          135 MEV  137 (259)
Q Consensus       135 l~~  137 (259)
                      ++.
T Consensus       105 Y~I  107 (259)
T COG0030         105 YNI  107 (259)
T ss_pred             Ccc
Confidence            653

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.61  E-value=1.7e-07  Score=79.75  Aligned_cols=106  Identities=23%  Similarity=0.338  Sum_probs=80.8

Q ss_pred             CcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcC----CCCeEEEEcccCCCc-CCCCceeEEEecc
Q 025039           60 SSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDLP-FSNDCFDVVIEKA  133 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~-~~~~~fD~V~~~~  133 (259)
                      ++||-+|.|.|..+..+.+...- +++.+|+++..++.+++.+....    -+++.++..|..+.- ....+||+|++..
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            69999999999999999998744 99999999999999999876654    356888888887742 1223799999643


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      .=. .          .|...---.++++.+.++|+++|+++.-
T Consensus       158 tdp-~----------gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         158 TDP-V----------GPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CCC-C----------CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            210 0          0000011268999999999999999987

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.59  E-value=3.1e-07  Score=88.14  Aligned_cols=113  Identities=12%  Similarity=0.070  Sum_probs=82.7

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcC-------------------------------------------CCeEEEeeCCHHH
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDG-------------------------------------------ITAITCIDLSAVA   93 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~-------------------------------------------~~~v~~vD~s~~~   93 (259)
                      .++..++|.+||+|.+++..+..+                                           ..+++|+|+++.+
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            457899999999999999886531                                           0158999999999


Q ss_pred             HHHHHHHHhhcCCCC-eEEEEcccCCCcCC--CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHH---hcc
Q 025039           94 VEKMQERLLLKGYKE-VKVLEADMLDLPFS--NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVH---RVL  167 (259)
Q Consensus        94 ~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~--~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~L  167 (259)
                      ++.|++|+...|+.+ +.+.++|+.+++.+  .++||+|++++++..-..           ...+..++...+.   +..
T Consensus       269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~-----------~~~~l~~lY~~lg~~lk~~  337 (702)
T PRK11783        269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLG-----------EEPALIALYSQLGRRLKQQ  337 (702)
T ss_pred             HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccC-----------chHHHHHHHHHHHHHHHHh
Confidence            999999999999865 88999999887533  357999999988753311           1233334433333   333


Q ss_pred             cCCcEEEEEecCC
Q 025039          168 KPDGLFISVSFGQ  180 (259)
Q Consensus       168 kpgG~l~~~~~~~  180 (259)
                      .+|+.+++++...
T Consensus       338 ~~g~~~~llt~~~  350 (702)
T PRK11783        338 FGGWNAALFSSSP  350 (702)
T ss_pred             CCCCeEEEEeCCH
Confidence            4899988876543

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.56  E-value=3.4e-07  Score=79.56  Aligned_cols=133  Identities=22%  Similarity=0.314  Sum_probs=82.7

Q ss_pred             hHHHHhhcccC--CCCCcEEEEcCCCCcchHHHHhc--------CCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEE
Q 025039           46 SHFRHLVQPHI--KPNSSVLELGCGNSRLSEGLYND--------GITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLE  113 (259)
Q Consensus        46 ~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~  113 (259)
                      ..+..++...+  .++.+|+|.+||+|.++..+.+.        ...+++|+|+++.++..|+-++...+...  ..+..
T Consensus        32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~  111 (311)
T PF02384_consen   32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ  111 (311)
T ss_dssp             HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred             HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence            44555544333  35568999999999999888763        22289999999999999998876665433  45788


Q ss_pred             cccCCCcCC--CCceeEEEecceeeee-eeC----CCCCCCCC-chhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          114 ADMLDLPFS--NDCFDVVIEKATMEVL-FVN----SGDPWNPQ-PETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       114 ~d~~~~~~~--~~~fD~V~~~~~l~~~-~~~----~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|....+..  ...||+|++++++... +..    ....|... +.....-..++..+.+.|++||++.++.+
T Consensus       112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  112 GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence            887654422  4689999999988654 111    11112210 11112223488999999999999887654

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=2.4e-07  Score=83.49  Aligned_cols=75  Identities=24%  Similarity=0.289  Sum_probs=65.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC---CCceeEEEecc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS---NDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~~  133 (259)
                      ++.++||+=||.|.+++.+++... +|+|+|+++.+++.|+++++.+++.|+++..++..++...   ...+|+|+..+
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP  370 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP  370 (432)
T ss_pred             CCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence            567999999999999999997766 9999999999999999999999999999999998875422   34789999654

>PRK00536 speE spermidine synthase; Provisional

Probab=98.53  E-value=1e-06  Score=74.27  Aligned_cols=96  Identities=21%  Similarity=0.295  Sum_probs=72.7

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc----CCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      +.+++||-+|.|.|..+..+++... +|+.+|+++++++.+++.+...    .-++++++.. +.+  ...++||+|++.
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD  146 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL  146 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence            4678999999999999999998854 9999999999999999954332    2234665541 111  123689999975


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ..+                    ..++.+.+++.|+|||+++.-
T Consensus       147 s~~--------------------~~~fy~~~~~~L~~~Gi~v~Q  170 (262)
T PRK00536        147 QEP--------------------DIHKIDGLKRMLKEDGVFISV  170 (262)
T ss_pred             CCC--------------------ChHHHHHHHHhcCCCcEEEEC
Confidence            322                    146788999999999999984

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.52  E-value=5.3e-07  Score=75.98  Aligned_cols=104  Identities=22%  Similarity=0.301  Sum_probs=75.4

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh----c------------------------CCC---
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL----K------------------------GYK---  107 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~------------------------~~~---  107 (259)
                      +.+||..|||.|+++..++..|+ .+.|.|+|--|+-...-.+..    .                        .+|   
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~  135 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD  135 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence            57899999999999999999999 899999999886554332211    0                        011   


Q ss_pred             ---------CeEEEEcccCCCcCCC---CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          108 ---------EVKVLEADMLDLPFSN---DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       108 ---------~v~~~~~d~~~~~~~~---~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                               ++....+|+.+...+.   ++||+|+...-+|               ...++.++++.+.++|||||+.+=
T Consensus       136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID---------------TA~Ni~~Yi~tI~~lLkpgG~WIN  200 (270)
T PF07942_consen  136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID---------------TAENIIEYIETIEHLLKPGGYWIN  200 (270)
T ss_pred             cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee---------------chHHHHHHHHHHHHHhccCCEEEe
Confidence                     2444556665543233   6899988754443               458899999999999999997775


Q ss_pred             Eec
Q 025039          176 VSF  178 (259)
Q Consensus       176 ~~~  178 (259)
                      ..+
T Consensus       201 ~GP  203 (270)
T PF07942_consen  201 FGP  203 (270)
T ss_pred             cCC
Confidence            443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.51  E-value=2.4e-07  Score=77.76  Aligned_cols=111  Identities=22%  Similarity=0.283  Sum_probs=78.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcC----CCCeEEEEcccCCCc-CCCC-ceeE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDLP-FSND-CFDV  128 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~-~~~~-~fD~  128 (259)
                      .+.+.+||-+|.|.|..+..+.+... .+++.+|+++.+++.|++.+....    -++++++.+|....- -..+ +||+
T Consensus        74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv  153 (246)
T PF01564_consen   74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV  153 (246)
T ss_dssp             SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred             CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence            34688999999999999999988753 399999999999999999765432    246899999987632 2234 8999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      |+....-         +..+.+  .--..++++.+++.|+|||++++-.
T Consensus       154 Ii~D~~d---------p~~~~~--~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  154 IIVDLTD---------PDGPAP--NLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEEESSS---------TTSCGG--GGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeCCC---------CCCCcc--cccCHHHHHHHHhhcCCCcEEEEEc
Confidence            9963221         010100  0112689999999999999999864

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.49  E-value=6.9e-07  Score=70.73  Aligned_cols=108  Identities=15%  Similarity=0.236  Sum_probs=82.2

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      -.+++|||+|+|+|..++..+..|...|+..|+.+..+...+-|.+.+++ .+.+...|...   .+..||+|+...++.
T Consensus        78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g---~~~~~Dl~LagDlfy  153 (218)
T COG3897          78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG---SPPAFDLLLAGDLFY  153 (218)
T ss_pred             cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC---CCcceeEEEeeceec
Confidence            36899999999999999999999988999999999999999999988885 67887777655   356799999876553


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF  183 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  183 (259)
                                     +.....+++....++...|-.+++-+++++..
T Consensus       154 ---------------~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l  185 (218)
T COG3897         154 ---------------NHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL  185 (218)
T ss_pred             ---------------CchHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence                           22455667774445555555555555555443

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.49  E-value=5.4e-07  Score=79.59  Aligned_cols=58  Identities=28%  Similarity=0.414  Sum_probs=47.9

Q ss_pred             CcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 025039           60 SSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD  118 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~  118 (259)
                      ..|||+-||.|.+++.+++... +|+|+|+++.+++.|+++++.+++.++++..++..+
T Consensus       198 ~~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~  255 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED  255 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred             CcEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence            4799999999999999998877 999999999999999999999999999999876543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.46  E-value=1e-06  Score=82.09  Aligned_cols=81  Identities=21%  Similarity=0.344  Sum_probs=58.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcC--------C-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-----cCCC
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDG--------I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~--------~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~  123 (259)
                      .+.+|||.|||+|.++..+++..        . ..++|+|+++.++..++.++...+...+.+.+.|....     ....
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence            34689999999999998887643        1 27899999999999999988766522345555554321     1112


Q ss_pred             CceeEEEecceeeee
Q 025039          124 DCFDVVIEKATMEVL  138 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~  138 (259)
                      +.||+|++++++...
T Consensus       111 ~~fD~IIgNPPy~~~  125 (524)
T TIGR02987       111 DLFDIVITNPPYGRL  125 (524)
T ss_pred             CcccEEEeCCCcccc
Confidence            579999999988643

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.44  E-value=1e-06  Score=75.13  Aligned_cols=109  Identities=17%  Similarity=0.150  Sum_probs=71.8

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .+.+|||+|||+|..+..+.+...  .+++++|.|+.|++.++..+....-........+...-..+....|+|+++.+|
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L  112 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL  112 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence            457999999999987665555422  289999999999999988765432111110111111101112234999999888


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      ..+            .+ ....++++.+.+.+.+  .|++++++.+
T Consensus       113 ~EL------------~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~  143 (274)
T PF09243_consen  113 NEL------------PS-AARAELVRSLWNKTAP--VLVLVEPGTP  143 (274)
T ss_pred             hcC------------Cc-hHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence            766            23 6677888888888776  8888887654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.43  E-value=9.9e-08  Score=85.59  Aligned_cols=99  Identities=27%  Similarity=0.444  Sum_probs=69.1

Q ss_pred             CcEEEEcCCCCcchHHHHhcCCCeEEEe---eCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           60 SSVLELGCGNSRLSEGLYNDGITAITCI---DLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ..+||+|||+|.++.+|.+++.. +..+   |..+..++.|.++    |++.+-. ...-..+|++++.||+|-|..++.
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V~-t~s~a~~d~~~~qvqfaleR----Gvpa~~~-~~~s~rLPfp~~~fDmvHcsrc~i  192 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNVT-TMSFAPNDEHEAQVQFALER----GVPAMIG-VLGSQRLPFPSNAFDMVHCSRCLI  192 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCce-EEEcccccCCchhhhhhhhc----Ccchhhh-hhccccccCCccchhhhhcccccc
Confidence            56999999999999999999763 3222   4445556666554    5443211 112346899999999999988764


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .        |.+      .-.-+|-++-|+|+|||++++...
T Consensus       193 ~--------W~~------~~g~~l~evdRvLRpGGyfv~S~p  220 (506)
T PF03141_consen  193 P--------WHP------NDGFLLFEVDRVLRPGGYFVLSGP  220 (506)
T ss_pred             c--------chh------cccceeehhhhhhccCceEEecCC
Confidence            3        321      113588999999999999998654

; GO: 0008168 methyltransferase activity

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.43  E-value=1.7e-06  Score=74.62  Aligned_cols=102  Identities=21%  Similarity=0.206  Sum_probs=84.6

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL  138 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~  138 (259)
                      -...+|+|.|.|+.+..+....+ ++-+++++...+..+...+. .   .|..+.+|+++- .|  .-|+|++..++|++
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~-~P--~~daI~mkWiLhdw  249 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQD-TP--KGDAIWMKWILHDW  249 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc-C---Ccceeccccccc-CC--CcCeEEEEeecccC
Confidence            47899999999999999999555 89999999888777777654 2   467778888764 33  34799999999998


Q ss_pred             eeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          139 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                                   ++++..++|+++++.|+|||.+++++.-.+
T Consensus       250 -------------tDedcvkiLknC~~sL~~~GkIiv~E~V~p  279 (342)
T KOG3178|consen  250 -------------TDEDCVKILKNCKKSLPPGGKIIVVENVTP  279 (342)
T ss_pred             -------------ChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence                         789999999999999999999999886433

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.41  E-value=2.2e-06  Score=75.17  Aligned_cols=124  Identities=15%  Similarity=0.150  Sum_probs=88.7

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVI  130 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~  130 (259)
                      .+++.+|||+++.+|.-+.+++..-.+  .|++.|.+...+...+.++...|+.+..+...|..+++   ++. +||-|+
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL  317 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL  317 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence            357899999999999988888775222  79999999999999999999999988777888887654   443 899998


Q ss_pred             ecceeee---eeeCCCCCCCCCc----hhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          131 EKATMEV---LFVNSGDPWNPQP----ETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       131 ~~~~l~~---~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ...+=.-   ...+....|....    +...-.+++|..+.+++++||+|+..+++-
T Consensus       318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI  374 (460)
T KOG1122|consen  318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI  374 (460)
T ss_pred             ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence            4322111   1111111122111    112234678999999999999999988864

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.41  E-value=4.3e-07  Score=79.94  Aligned_cols=112  Identities=23%  Similarity=0.274  Sum_probs=92.8

Q ss_pred             hcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEE
Q 025039           52 VQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVI  130 (259)
Q Consensus        52 l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~  130 (259)
                      +...+.++..++|+|||-|.....++......++|++.++..+.++........+++ ..++..|+.+.++++..||.+.
T Consensus       104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~  183 (364)
T KOG1269|consen  104 LRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVR  183 (364)
T ss_pred             HhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEE
Confidence            344556777999999999999999988876699999999998888888776666655 4557788888899999999999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +..+..|.               ++...+++++.++++|||+++..++
T Consensus       184 ~ld~~~~~---------------~~~~~~y~Ei~rv~kpGG~~i~~e~  216 (364)
T KOG1269|consen  184 FLEVVCHA---------------PDLEKVYAEIYRVLKPGGLFIVKEW  216 (364)
T ss_pred             EEeecccC---------------CcHHHHHHHHhcccCCCceEEeHHH
Confidence            86655444               6778999999999999999998665

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.39  E-value=3.1e-07  Score=73.89  Aligned_cols=76  Identities=17%  Similarity=0.262  Sum_probs=63.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCc----CCCCceeEEEec
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP----FSNDCFDVVIEK  132 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~----~~~~~fD~V~~~  132 (259)
                      ....|+|..||.|..++..+..++ .|+++|+++.-+..|+++++..|+++ |+|+++|+.++.    +....+|+|+..
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s  172 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS  172 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence            456899999999999999999998 89999999999999999999999987 999999998742    333346677755


Q ss_pred             ce
Q 025039          133 AT  134 (259)
Q Consensus       133 ~~  134 (259)
                      ++
T Consensus       173 pp  174 (263)
T KOG2730|consen  173 PP  174 (263)
T ss_pred             CC
Confidence            43

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.38  E-value=4.2e-07  Score=71.42  Aligned_cols=99  Identities=22%  Similarity=0.296  Sum_probs=79.7

Q ss_pred             CcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeee
Q 025039           60 SSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF  139 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~  139 (259)
                      ..+.|+|+|+|.++...+.... +|++++.+|.....|.+++...|..++.++.+|+.+..+  +..|+|+|-. ++...
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A~-rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEm-lDTaL  109 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAAE-RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEM-LDTAL  109 (252)
T ss_pred             hceeeccCCcchHHHHHHhhhc-eEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHH-hhHHh
Confidence            6899999999999998887744 999999999999999999988888889999999998877  4689999854 33221


Q ss_pred             eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          140 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                      .            .+....++..+...|+-.+.++
T Consensus       110 i------------~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         110 I------------EEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             h------------cccccHHHHHHHHHhhcCCccc
Confidence            1            1334456777777888888877

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.36  E-value=4.4e-07  Score=72.60  Aligned_cols=111  Identities=23%  Similarity=0.380  Sum_probs=67.3

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcC--CCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC------c--CC--CCc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDG--ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL------P--FS--NDC  125 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~------~--~~--~~~  125 (259)
                      ++.+|||+||++|..+..+.+.+  ..+|+|+|+.+.           ...+++..+.+|+.+.      .  +.  ...
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence            34899999999999999999998  239999999875           1123455556665431      1  11  258


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF  183 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  183 (259)
                      +|+|+|.+.....    +.+-..+....+.....+.-+.+.|+|||.+++-.+.....
T Consensus        92 ~dlv~~D~~~~~~----g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~  145 (181)
T PF01728_consen   92 FDLVLSDMAPNVS----GDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI  145 (181)
T ss_dssp             ESEEEE-----------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred             cceeccccccCCC----CchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence            9999998744322    10000001223344456666678899999999877765443

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.33  E-value=1.2e-06  Score=75.12  Aligned_cols=74  Identities=15%  Similarity=0.241  Sum_probs=61.0

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCC--CceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSN--DCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~--~~fD~V~  130 (259)
                      .++..++|.+||.|..+..+++... . +|+|+|.++.+++.+++++..  ..++.++++|+.++.  .+.  .++|.|+
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl   95 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGIL   95 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEE
Confidence            4678999999999999999999864 3 999999999999999998865  357999999988753  222  2799998


Q ss_pred             ec
Q 025039          131 EK  132 (259)
Q Consensus       131 ~~  132 (259)
                      +.
T Consensus        96 ~D   97 (296)
T PRK00050         96 LD   97 (296)
T ss_pred             EC
Confidence            65

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.30  E-value=1.5e-05  Score=64.80  Aligned_cols=119  Identities=17%  Similarity=0.219  Sum_probs=81.6

Q ss_pred             cccccchHHHHhhcc-----cCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEE
Q 025039           40 EWLKDYSHFRHLVQP-----HIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVL  112 (259)
Q Consensus        40 ~w~~~~~~~~~~l~~-----~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~  112 (259)
                      .|-...+.+...+..     .+.++.+||-+|+.+|....+++.. +.. .|+++|+|+...+..-.-++.+  +|+-.+
T Consensus        50 ~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPI  127 (229)
T PF01269_consen   50 VWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPI  127 (229)
T ss_dssp             EE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEE
T ss_pred             ecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--Cceeee
Confidence            466666677766643     3468999999999999999999887 434 8999999997766655544443  478878


Q ss_pred             EcccCCCc---CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          113 EADMLDLP---FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       113 ~~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .+|+....   .--+.+|+|++.-.                 ...+.+-++.++...||+||.+++.-
T Consensus       128 l~DAr~P~~Y~~lv~~VDvI~~DVa-----------------Qp~Qa~I~~~Na~~fLk~gG~~~i~i  178 (229)
T PF01269_consen  128 LEDARHPEKYRMLVEMVDVIFQDVA-----------------QPDQARIAALNARHFLKPGGHLIISI  178 (229)
T ss_dssp             ES-TTSGGGGTTTS--EEEEEEE-S-----------------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eccCCChHHhhcccccccEEEecCC-----------------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence            88987632   12357999986321                 22566778888999999999999863

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.29  E-value=4.8e-06  Score=69.86  Aligned_cols=111  Identities=21%  Similarity=0.291  Sum_probs=74.1

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC---------------------------C-CC
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG---------------------------Y-KE  108 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------------------------~-~~  108 (259)
                      .++.++||+|||+-.....-+.....+++..|+.+..++..++-++..+                           . ..
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            3567899999999655444444445589999999998887766443221                           0 11


Q ss_pred             e-EEEEcccCCCc-CCC-----CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          109 V-KVLEADMLDLP-FSN-----DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       109 v-~~~~~d~~~~~-~~~-----~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      | .++..|+.+.+ +..     .+||+|++..+++...           .+.+....+++++.++|||||.|++...
T Consensus       135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~-----------~d~~~y~~al~ni~~lLkpGG~Lil~~~  200 (256)
T PF01234_consen  135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC-----------KDLDEYRRALRNISSLLKPGGHLILAGV  200 (256)
T ss_dssp             EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH------------SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc-----------CCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            3 35667887643 221     2599999998887763           2557889999999999999999998753

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=8.2e-06  Score=65.81  Aligned_cols=114  Identities=23%  Similarity=0.263  Sum_probs=77.8

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--------CCC
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSN  123 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~  123 (259)
                      ..+.++..|+|+||.+|..+..+++....  .|+++|+.|-         +  ..+++.++++|+..-.        +..
T Consensus        41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~--~~~~V~~iq~d~~~~~~~~~l~~~l~~  109 (205)
T COG0293          41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------K--PIPGVIFLQGDITDEDTLEKLLEALGG  109 (205)
T ss_pred             CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------c--cCCCceEEeeeccCccHHHHHHHHcCC
Confidence            34568899999999999999999887543  5999999873         1  2356899999997632        344


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      ..+|+|++.+.-..    .+..-..+.....-...+++-+..+|+|||.+++-.+....
T Consensus       110 ~~~DvV~sD~ap~~----~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~  164 (205)
T COG0293         110 APVDVVLSDMAPNT----SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED  164 (205)
T ss_pred             CCcceEEecCCCCc----CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence            45799997543210    01111111233344456777788899999999997775443

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.26  E-value=1.4e-05  Score=60.75  Aligned_cols=103  Identities=31%  Similarity=0.419  Sum_probs=70.6

Q ss_pred             EEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC--CcCCC-CceeEEEecceee
Q 025039           62 VLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--LPFSN-DCFDVVIEKATME  136 (259)
Q Consensus        62 vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~fD~V~~~~~l~  136 (259)
                      ++|+|||+|... .+.....  ..++++|+++.++..++..........+.+...+...  .++.. ..||++ +.....
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~  129 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL  129 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence            999999999976 3333332  2788999999999986555432111115777777765  56555 479999 443332


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      +.             . . ....+.++.+.++|+|.+++......
T Consensus       130 ~~-------------~-~-~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         130 HL-------------L-P-PAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             hc-------------C-C-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            22             0 1 67899999999999999998776543

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.26  E-value=2.7e-06  Score=69.30  Aligned_cols=105  Identities=23%  Similarity=0.245  Sum_probs=63.7

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHH-------hhcCC--CCeEEEEcccCCCcCC---
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERL-------LLKGY--KEVKVLEADMLDLPFS---  122 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~-------~~~~~--~~v~~~~~d~~~~~~~---  122 (259)
                      +.++..++|+|||.|......+-. +..+++|+|+.+...+.|+...       +..+.  ..+.+..+|+.+.++.   
T Consensus        40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~  119 (205)
T PF08123_consen   40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI  119 (205)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence            567899999999999988766644 5547999999999888776532       22232  3477788888763311   


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      -...|+|++++...               + ++....|.+....||+|.+++..
T Consensus       120 ~s~AdvVf~Nn~~F---------------~-~~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  120 WSDADVVFVNNTCF---------------D-PDLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             GHC-SEEEE--TTT-----------------HHHHHHHHHHHTTS-TT-EEEES
T ss_pred             hcCCCEEEEecccc---------------C-HHHHHHHHHHHhcCCCCCEEEEC
Confidence            13579999876531               1 45566668888889999887753

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=5.4e-05  Score=60.47  Aligned_cols=121  Identities=16%  Similarity=0.171  Sum_probs=89.1

Q ss_pred             CcccccccchHHHHhhccc-----CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeE
Q 025039           37 EHYEWLKDYSHFRHLVQPH-----IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVK  110 (259)
Q Consensus        37 ~~~~w~~~~~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~  110 (259)
                      ....|-...+.+...+...     ++++.+||-+|+.+|....+++..... .++++|+|+.+....-..+..+  +|+-
T Consensus        50 eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~  127 (231)
T COG1889          50 EYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNII  127 (231)
T ss_pred             ceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCce
Confidence            3445777766666655533     458999999999999999999987544 8999999999888777766654  4777


Q ss_pred             EEEcccCCCc---CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          111 VLEADMLDLP---FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       111 ~~~~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      -+.+|+....   .--+.+|+|+..-                 ..+.+..-+..++...|++||.++++
T Consensus       128 PIL~DA~~P~~Y~~~Ve~VDviy~DV-----------------AQp~Qa~I~~~Na~~FLk~~G~~~i~  179 (231)
T COG1889         128 PILEDARKPEKYRHLVEKVDVIYQDV-----------------AQPNQAEILADNAEFFLKKGGYVVIA  179 (231)
T ss_pred             eeecccCCcHHhhhhcccccEEEEec-----------------CCchHHHHHHHHHHHhcccCCeEEEE
Confidence            7888887632   1124688888521                 12345666788899999999988774

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.14  E-value=2.2e-05  Score=66.63  Aligned_cols=76  Identities=20%  Similarity=0.359  Sum_probs=62.1

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC---CceeEEEecc
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN---DCFDVVIEKA  133 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~V~~~~  133 (259)
                      .++..|||+|+|+|.++..|++.+. +++++|+++.+++..++++..  .++++++.+|+.++....   .....|+++-
T Consensus        29 ~~~~~VlEiGpG~G~lT~~L~~~~~-~v~~vE~d~~~~~~L~~~~~~--~~~~~vi~~D~l~~~~~~~~~~~~~~vv~Nl  105 (262)
T PF00398_consen   29 SEGDTVLEIGPGPGALTRELLKRGK-RVIAVEIDPDLAKHLKERFAS--NPNVEVINGDFLKWDLYDLLKNQPLLVVGNL  105 (262)
T ss_dssp             GTTSEEEEESSTTSCCHHHHHHHSS-EEEEEESSHHHHHHHHHHCTT--CSSEEEEES-TTTSCGGGHCSSSEEEEEEEE
T ss_pred             CCCCEEEEeCCCCccchhhHhcccC-cceeecCcHhHHHHHHHHhhh--cccceeeecchhccccHHhhcCCceEEEEEe
Confidence            3789999999999999999999995 999999999999999998762  257999999999876443   3456777765


Q ss_pred             ee
Q 025039          134 TM  135 (259)
Q Consensus       134 ~l  135 (259)
                      ++
T Consensus       106 Py  107 (262)
T PF00398_consen  106 PY  107 (262)
T ss_dssp             TG
T ss_pred             cc
Confidence            54

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.12  E-value=8.6e-06  Score=62.31  Aligned_cols=58  Identities=21%  Similarity=0.248  Sum_probs=51.1

Q ss_pred             cEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 025039           61 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD  118 (259)
Q Consensus        61 ~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~  118 (259)
                      .+||+|||.|..+..++..++. +++++|+++.+.+.++++++.++++++.+.+..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            4899999999999999998876 899999999999999999988887778887766654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.11  E-value=1.4e-05  Score=67.68  Aligned_cols=104  Identities=22%  Similarity=0.276  Sum_probs=64.4

Q ss_pred             CCcEEEEcCCC-CcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHh-hcCCC-CeEEEEcccCCCcCCCCceeEEEecc
Q 025039           59 NSSVLELGCGN-SRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLL-LKGYK-EVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        59 ~~~vLDiGcG~-G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~-~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.+|+=||||+ -..++.+++. +.. .++++|+++.+++.+++-++ ..++. .+.+.++|..+....-..||+|+...
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa  200 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA  200 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence            46999999998 4555555554 443 79999999999999998776 33333 48999999877654446799998655


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ....              ..+...+++..+.+.++||..+++-
T Consensus       201 lVg~--------------~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  201 LVGM--------------DAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             T-S------------------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             hccc--------------ccchHHHHHHHHHhhCCCCcEEEEe
Confidence            4321              2346789999999999999999986

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.08  E-value=1.8e-05  Score=64.11  Aligned_cols=93  Identities=24%  Similarity=0.336  Sum_probs=71.4

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC---CCCceeEEEeccee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF---SNDCFDVVIEKATM  135 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~V~~~~~l  135 (259)
                      ..++||+||=+......-. ... .|+.||+++.               .-.+.+.|+.+.|.   +.+.||+|.++-++
T Consensus        52 ~lrlLEVGals~~N~~s~~-~~f-dvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL  114 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACSTS-GWF-DVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLVL  114 (219)
T ss_pred             cceEEeecccCCCCccccc-Cce-eeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence            3689999998665554321 123 7999999862               34557788888664   36789999999999


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcE-----EEEEecCC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL-----FISVSFGQ  180 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~-----l~~~~~~~  180 (259)
                      .++            .+....-+.+..+.+.|+|+|.     |+++.+..
T Consensus       115 NfV------------P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~  152 (219)
T PF11968_consen  115 NFV------------PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP  152 (219)
T ss_pred             eeC------------CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence            988            3567888999999999999999     88876643

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.04  E-value=6.7e-07  Score=71.36  Aligned_cols=94  Identities=18%  Similarity=0.349  Sum_probs=70.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      .+.++||+|+|.|..+..++.... +|++.+.|..|..+.+.+    ++.-+..  .++.+   .+-++|+|.|...++-
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fe-evyATElS~tMr~rL~kk----~ynVl~~--~ew~~---t~~k~dli~clNlLDR  181 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFE-EVYATELSWTMRDRLKKK----NYNVLTE--IEWLQ---TDVKLDLILCLNLLDR  181 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHH-HHHHHHhhHHHHHHHhhc----CCceeee--hhhhh---cCceeehHHHHHHHHh
Confidence            357899999999999998887655 899999999998887764    3311111  12222   2347999999888865


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccC-CcEEEEE
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP-DGLFISV  176 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~  176 (259)
                      .               .++-.+|+.++.+|+| +|.+++.
T Consensus       182 c---------------~~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  182 C---------------FDPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             h---------------cChHHHHHHHHHHhccCCCcEEEE
Confidence            4               4567899999999999 8888863

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.02  E-value=5.7e-06  Score=74.47  Aligned_cols=62  Identities=16%  Similarity=0.341  Sum_probs=55.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD  118 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~  118 (259)
                      ++.+..+||++||||..++.+++... +|+|+++++.+++.|+.++..+|+.|.+|+++.+.+
T Consensus       381 l~~~k~llDv~CGTG~iglala~~~~-~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~  442 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALARGVK-RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED  442 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhhcccc-ceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence            45678899999999999999987755 999999999999999999999999999999996655

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=98.01  E-value=2.1e-05  Score=62.77  Aligned_cols=111  Identities=19%  Similarity=0.350  Sum_probs=73.6

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcC-------CCCeEEEEcccCCC-c--CCCCce
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG-------YKEVKVLEADMLDL-P--FSNDCF  126 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~-~--~~~~~f  126 (259)
                      ..-.+.|||||-|.+++.|+...+. -+.|+||--+.-++.++++....       ++++.++..+.... |  +..++.
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL  139 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL  139 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence            3457999999999999999999888 89999999999999998877665       56677777766552 2  122221


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchh--HHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPET--VTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .-.+      +++   .+|++....+  .---..++.+..-+|++||.++.++
T Consensus       140 skmf------f~f---pdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  140 SKMF------FLF---PDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             ccce------eec---CChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            1111      011   1111110000  0112368889999999999999865

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.93  E-value=3.5e-05  Score=66.82  Aligned_cols=88  Identities=18%  Similarity=0.225  Sum_probs=63.4

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.++.++||+||++|..+..+.+.|. +|++||..+ +-    ..+..  -++|....+|......+.+.+|.++|..+ 
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~----~~L~~--~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-  279 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MA----QSLMD--TGQVEHLRADGFKFRPPRKNVDWLVCDMV-  279 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cC----HhhhC--CCCEEEEeccCcccCCCCCCCCEEEEecc-
Confidence            35789999999999999999999998 999999654 22    22221  24688888887765423568999998544 


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD  170 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  170 (259)
                                        ..+.++++-+.++|..|
T Consensus       280 ------------------e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        280 ------------------EKPARVAELMAQWLVNG  296 (357)
T ss_pred             ------------------cCHHHHHHHHHHHHhcC
Confidence                              34456666666777554

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.91  E-value=8.7e-06  Score=59.10  Aligned_cols=98  Identities=19%  Similarity=0.220  Sum_probs=42.8

Q ss_pred             EEEcCCCCcchHHHHhcCC----CeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCC--cCCCCceeEEEeccee
Q 025039           63 LELGCGNSRLSEGLYNDGI----TAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL--PFSNDCFDVVIEKATM  135 (259)
Q Consensus        63 LDiGcG~G~~~~~l~~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~--~~~~~~fD~V~~~~~l  135 (259)
                      ||+|+..|..+..+++...    .+++++|..+. .+.+++.++..++. +++++.++..+.  .++.+++|+++..+. 
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-   78 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence            6899999998888877522    26999999984 22233333323333 489999887652  133468999985432 


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                                     +..+.....+..+.+.|+|||++++-+
T Consensus        79 ---------------H~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   79 ---------------HSYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             -----------------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             ---------------CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence                           133567788999999999999998754

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.91  E-value=0.00013  Score=58.89  Aligned_cols=106  Identities=19%  Similarity=0.266  Sum_probs=81.7

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC--cCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~  132 (259)
                      ...++.+||.+|=|-|...-.+.++-+.+=+.++..+..++.++...-... .+|.+..+-+.+.  .++++.||-|+  
T Consensus        98 i~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~~L~d~~FDGI~--  174 (271)
T KOG1709|consen   98 ISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLNTLPDKHFDGIY--  174 (271)
T ss_pred             HhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc-cceEEEecchHhhhccccccCcceeE--
Confidence            346789999999999999999988877778889999999999987643222 3577777766552  25677899988  


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                        ++..    +       +..++...+.+.+.++|||+|++-+.
T Consensus       175 --yDTy----~-------e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  175 --YDTY----S-------ELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             --eech----h-------hHHHHHHHHHHHHhhhcCCCceEEEe
Confidence              3332    0       24578889999999999999999874

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=0.00012  Score=63.65  Aligned_cols=136  Identities=15%  Similarity=0.150  Sum_probs=87.5

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCC---C--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGI---T--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--  120 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--  120 (259)
                      +...+...++|+.+|||+|+.+|.-+..+.+...   .  .|++-|+++..+......+....-++..+...++...+  
T Consensus       145 mlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~  224 (375)
T KOG2198|consen  145 MLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNI  224 (375)
T ss_pred             ccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccc
Confidence            3333444578999999999999999988887633   1  69999999999999888776554444555555544332  


Q ss_pred             -------CCCCceeEEEecce-ee-eeeeCCCCC----CCCCc-hh-HHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039          121 -------FSNDCFDVVIEKAT-ME-VLFVNSGDP----WNPQP-ET-VTKVMAMLEGVHRVLKPDGLFISVSFGQPHF  183 (259)
Q Consensus       121 -------~~~~~fD~V~~~~~-l~-~~~~~~~~~----~~~~~-~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  183 (259)
                             .....||-|+|.-+ -+ -.+.....-    |..+. .+ ..-...+|.+..++||+||.++..+++....
T Consensus       225 ~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi  302 (375)
T KOG2198|consen  225 YLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI  302 (375)
T ss_pred             ccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence                   12346999886421 11 111111111    21111 11 1234578999999999999999999876543

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.87  E-value=0.00047  Score=56.90  Aligned_cols=114  Identities=20%  Similarity=0.208  Sum_probs=69.8

Q ss_pred             hhcccCCCCCcEEEEcCCCCcchHHHHhcC-CCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-CcC-CCCcee
Q 025039           51 LVQPHIKPNSSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPF-SNDCFD  127 (259)
Q Consensus        51 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~-~~~~fD  127 (259)
                      +....--.|++||-+|=+-- .++.++-.+ +.+|+.+|+++..++..++.+++.|++ ++....|+.+ +|. -.++||
T Consensus        37 ~~~~gdL~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~~~fD  114 (243)
T PF01861_consen   37 MAERGDLEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEELRGKFD  114 (243)
T ss_dssp             HHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BS
T ss_pred             HHhcCcccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHHhcCCC
Confidence            33343346889999995543 333333333 349999999999999999999999985 9999999977 331 147899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      +++..++.                +.+...-++.+....||..|...+..++..+
T Consensus       115 ~f~TDPPy----------------T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~  153 (243)
T PF01861_consen  115 VFFTDPPY----------------TPEGLKLFLSRGIEALKGEGCAGYFGFTHKE  153 (243)
T ss_dssp             EEEE---S----------------SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred             EEEeCCCC----------------CHHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence            99987654                6688889999999999987755555565543

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=6.3e-06  Score=63.33  Aligned_cols=117  Identities=14%  Similarity=0.143  Sum_probs=80.0

Q ss_pred             CCCcEEEEcCCC-CcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcC---CCCeEEEEcccCC--CcCCCCceeEEE
Q 025039           58 PNSSVLELGCGN-SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLD--LPFSNDCFDVVI  130 (259)
Q Consensus        58 ~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~--~~~~~~~fD~V~  130 (259)
                      .+.+|||+|.|- |..++.++...+. .|...|-+++.++..++....+.   ++.+.++.-+...  .......||+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            578999999996 6666666666555 89999999999999887655442   2222222222211  112345899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccC
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFN  189 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  189 (259)
                      |..++..               .+-...+++.+..+|+|.|.-++..+.+......+..
T Consensus       109 aADClFf---------------dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~d  152 (201)
T KOG3201|consen  109 AADCLFF---------------DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLD  152 (201)
T ss_pred             eccchhH---------------HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHH
Confidence            9766532               2556788999999999999998887776655544444

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.86  E-value=6.9e-05  Score=64.13  Aligned_cols=79  Identities=16%  Similarity=0.257  Sum_probs=46.5

Q ss_pred             CCcEEEEcCCCCcchHHHHh--cCCCeEEEeeCCHHHHHHHHHHHhhc-CCCC-eEEEEcc----cCC-CcCCCCceeEE
Q 025039           59 NSSVLELGCGNSRLSEGLYN--DGITAITCIDLSAVAVEKMQERLLLK-GYKE-VKVLEAD----MLD-LPFSNDCFDVV  129 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~--~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~-v~~~~~d----~~~-~~~~~~~fD~V  129 (259)
                      ..++||||||....--.|..  .+. +++|+|+++..++.|++++..+ ++.. |+++...    +.. +..+.+.||+.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft  181 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT  181 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence            46899999998754333332  244 9999999999999999999998 6654 8776542    222 22234689999


Q ss_pred             Eecceeeee
Q 025039          130 IEKATMEVL  138 (259)
Q Consensus       130 ~~~~~l~~~  138 (259)
                      +|+++|+..
T Consensus       182 mCNPPFy~s  190 (299)
T PF05971_consen  182 MCNPPFYSS  190 (299)
T ss_dssp             EE-----SS
T ss_pred             ecCCccccC
Confidence            999998654

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK10742 putative methyltransferase; Provisional

Probab=97.85  E-value=5.3e-05  Score=62.96  Aligned_cols=81  Identities=17%  Similarity=0.169  Sum_probs=63.9

Q ss_pred             CCCCC--cEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc------C--C-CCeEEEEcccCCC-cCCC
Q 025039           56 IKPNS--SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK------G--Y-KEVKVLEADMLDL-PFSN  123 (259)
Q Consensus        56 ~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~--~-~~v~~~~~d~~~~-~~~~  123 (259)
                      ++++.  +|||+.+|.|..+..++..|. +|+++|-++......++++...      +  + .+++++++|..+. ....
T Consensus        84 lk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~  162 (250)
T PRK10742         84 IKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT  162 (250)
T ss_pred             CCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence            34555  899999999999999999998 6999999999999999888763      2  1 3578888887653 2122


Q ss_pred             CceeEEEecceeee
Q 025039          124 DCFDVVIEKATMEV  137 (259)
Q Consensus       124 ~~fD~V~~~~~l~~  137 (259)
                      .+||+|+..++|.+
T Consensus       163 ~~fDVVYlDPMfp~  176 (250)
T PRK10742        163 PRPQVVYLDPMFPH  176 (250)
T ss_pred             CCCcEEEECCCCCC
Confidence            47999998877744

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.82  E-value=0.00038  Score=57.79  Aligned_cols=92  Identities=22%  Similarity=0.308  Sum_probs=64.1

Q ss_pred             ccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC
Q 025039           43 KDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF  121 (259)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~  121 (259)
                      .....+...+...++++.+|+|+|||.=-++..+...... .++|.|+++.+++.....+...+. +..+...|...-+ 
T Consensus        90 ~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~-  167 (251)
T PF07091_consen   90 PNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDP-  167 (251)
T ss_dssp             GGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSH-
T ss_pred             hhHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccC-
Confidence            3344555555566677899999999998887776666544 999999999999999998888774 5677777876644 


Q ss_pred             CCCceeEEEecceee
Q 025039          122 SNDCFDVVIEKATME  136 (259)
Q Consensus       122 ~~~~fD~V~~~~~l~  136 (259)
                      +....|+.+..=+++
T Consensus       168 ~~~~~DlaLllK~lp  182 (251)
T PF07091_consen  168 PKEPADLALLLKTLP  182 (251)
T ss_dssp             TTSEESEEEEET-HH
T ss_pred             CCCCcchhhHHHHHH
Confidence            346799998754443

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.81  E-value=0.00024  Score=53.97  Aligned_cols=91  Identities=23%  Similarity=0.322  Sum_probs=58.8

Q ss_pred             eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCc--CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHH
Q 025039           83 AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP--FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAM  159 (259)
Q Consensus        83 ~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  159 (259)
                      +|+++|+.+++++.+++++...+..+ ++++..+-..+.  .+.+.+|+++.|  |.++..  +++-.  ....+.-...
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPg--gDk~i--~T~~~TTl~A   74 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPG--GDKSI--TTKPETTLKA   74 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CT--S-TTS--B--HHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCC--CCCCC--CcCcHHHHHH
Confidence            58999999999999999999988765 888876655543  233479998855  333311  11110  0123455678


Q ss_pred             HHHHHhcccCCcEEEEEecC
Q 025039          160 LEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       160 l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++.+.++|+|||++.++.+.
T Consensus        75 l~~al~lL~~gG~i~iv~Y~   94 (140)
T PF06962_consen   75 LEAALELLKPGGIITIVVYP   94 (140)
T ss_dssp             HHHHHHHEEEEEEEEEEE--
T ss_pred             HHHHHHhhccCCEEEEEEeC
Confidence            99999999999999998875

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.78  E-value=0.00021  Score=54.80  Aligned_cols=77  Identities=27%  Similarity=0.376  Sum_probs=56.6

Q ss_pred             CCCCcEEEEcCCCCcchHHHHh-----cCCC-eEEEeeCCHHHHHHHHHHHhhcC--C-CCeEEEEcccCCCcCCCCcee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYN-----DGIT-AITCIDLSAVAVEKMQERLLLKG--Y-KEVKVLEADMLDLPFSNDCFD  127 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~~~~~~fD  127 (259)
                      .+..+|+|+|||.|.++..++.     . +. +|+++|.++..++.+.++.+..+  + .++.+..++..... .....+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  101 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD  101 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence            4578999999999999999998     4 44 99999999999999999887766  3 23555555444322 134567


Q ss_pred             EEEecceeeee
Q 025039          128 VVIEKATMEVL  138 (259)
Q Consensus       128 ~V~~~~~l~~~  138 (259)
                      +++.   +|..
T Consensus       102 ~~vg---LHaC  109 (141)
T PF13679_consen  102 ILVG---LHAC  109 (141)
T ss_pred             EEEE---eecc
Confidence            7776   5544

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.72  E-value=0.00019  Score=61.05  Aligned_cols=117  Identities=17%  Similarity=0.263  Sum_probs=73.2

Q ss_pred             hHHHHhhcccCCC------CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHH---hhc------------
Q 025039           46 SHFRHLVQPHIKP------NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERL---LLK------------  104 (259)
Q Consensus        46 ~~~~~~l~~~~~~------~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~---~~~------------  104 (259)
                      ..+...+..+.++      ..+||..|||.|+++..++..|+ .+-|-|+|--|+=...=.+   +..            
T Consensus       132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~  210 (369)
T KOG2798|consen  132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQY  210 (369)
T ss_pred             hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecc
Confidence            3344444444443      56899999999999999999999 7888888876654322111   000            


Q ss_pred             -------------CCCCeEE------------EEcccCCC---cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHH
Q 025039          105 -------------GYKEVKV------------LEADMLDL---PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKV  156 (259)
Q Consensus       105 -------------~~~~v~~------------~~~d~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~  156 (259)
                                   .+|++..            -.||+.+.   +...+.||+|+...-++               ...+.
T Consensus       211 sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID---------------Ta~Ni  275 (369)
T KOG2798|consen  211 SNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID---------------TAHNI  275 (369)
T ss_pred             ccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee---------------chHHH
Confidence                         0111111            11333221   11224688887653333               44788


Q ss_pred             HHHHHHHHhcccCCcEEEEEec
Q 025039          157 MAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       157 ~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      -++|+.+.++|+|||+.+=+.+
T Consensus       276 leYi~tI~~iLk~GGvWiNlGP  297 (369)
T KOG2798|consen  276 LEYIDTIYKILKPGGVWINLGP  297 (369)
T ss_pred             HHHHHHHHHhccCCcEEEeccc
Confidence            8999999999999999986543

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.71  E-value=0.00034  Score=55.29  Aligned_cols=111  Identities=17%  Similarity=0.251  Sum_probs=70.3

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc-ccCCC--------cCCC
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDL--------PFSN  123 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~--------~~~~  123 (259)
                      .+.|+.+|||+||.+|..+.-..++. ++ .|.|+|+-.-           .....+.++.+ |+.+.        .+++
T Consensus        66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPN  134 (232)
T ss_pred             ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCC
Confidence            45789999999999999999887764 55 8999998531           12234566665 66552        1466


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ..+|+|++.+.-...    |..-..+....+.-.+++--....++|+|.+++-.+..
T Consensus       135 r~VdvVlSDMapnaT----Gvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g  187 (232)
T KOG4589|consen  135 RPVDVVLSDMAPNAT----GVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG  187 (232)
T ss_pred             CcccEEEeccCCCCc----CcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence            789999975432111    11000011122233345555667889999999977754

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.69  E-value=0.00044  Score=52.53  Aligned_cols=106  Identities=13%  Similarity=0.238  Sum_probs=81.3

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      ++..+.+|+|+|.|+.....++.|....+|+|+++-.+..++-..-..++.. ..|..-|+.+..+.+-.+-+|+.    
T Consensus        71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFg----  146 (199)
T KOG4058|consen   71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFG----  146 (199)
T ss_pred             CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEee----
Confidence            3557999999999999999999985589999999999999988777777654 78888888887765544444442    


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                                      ..+....+-.++..-|..|..++.+-|-.|.
T Consensus       147 ----------------aes~m~dLe~KL~~E~p~nt~vvacRFPLP~  177 (199)
T KOG4058|consen  147 ----------------AESVMPDLEDKLRTELPANTRVVACRFPLPT  177 (199)
T ss_pred             ----------------hHHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence                            1234556667777788899999987665544

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.68  E-value=0.00029  Score=57.90  Aligned_cols=96  Identities=15%  Similarity=0.245  Sum_probs=70.6

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeE-EEEcccCCCc---CCCCceeEEEec
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVK-VLEADMLDLP---FSNDCFDVVIEK  132 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~-~~~~d~~~~~---~~~~~fD~V~~~  132 (259)
                      .++..+||+|+.||.++..+.+.|...|+++|..-..+..--+.     -+++. ....|+..+.   +. +..|+++|.
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D  151 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPEDFT-EKPDLIVID  151 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence            47899999999999999999999998999999986554432221     13443 3445665543   22 367899876


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      -+|                  -.+..+|..+..+++|+|.++..
T Consensus       152 vSF------------------ISL~~iLp~l~~l~~~~~~~v~L  177 (245)
T COG1189         152 VSF------------------ISLKLILPALLLLLKDGGDLVLL  177 (245)
T ss_pred             eeh------------------hhHHHHHHHHHHhcCCCceEEEE
Confidence            554                  34568899999999999988874

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.61  E-value=0.00026  Score=61.46  Aligned_cols=111  Identities=23%  Similarity=0.282  Sum_probs=76.3

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcC-CCeEEEeeCCHHHHHHHHHHH--hhc---CC--CCeEEEEcccCCC-cCCCCcee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERL--LLK---GY--KEVKVLEADMLDL-PFSNDCFD  127 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~--~~~---~~--~~v~~~~~d~~~~-~~~~~~fD  127 (259)
                      +...+||-+|.|.|.-+..+.+.- ..+++-+|++|+|++.++++.  ...   .+  ++++++..|+.++ ....+.||
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD  367 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD  367 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence            455789999999999999998874 449999999999999998432  211   22  4578888887763 23345899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +|+..-      .++..+-.    ..-=-.++..-+++.|+++|.+++-.
T Consensus       368 ~vIVDl------~DP~tps~----~rlYS~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         368 VVIVDL------PDPSTPSI----GRLYSVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             EEEEeC------CCCCCcch----hhhhhHHHHHHHHHhcCcCceEEEec
Confidence            998531      11111100    00112467788899999999999854

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.60  E-value=0.00027  Score=59.40  Aligned_cols=108  Identities=14%  Similarity=0.184  Sum_probs=68.9

Q ss_pred             CcEEEEcCCC--CcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CC----CCcee--
Q 025039           60 SSVLELGCGN--SRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FS----NDCFD--  127 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~----~~~fD--  127 (259)
                      ..+||+|||-  -.....+++. .+. +|+-+|.++-.+..++..+....-....++.+|+.+..  +.    .+-+|  
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~  149 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD  149 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence            6799999995  3455556554 444 99999999999999999887654212788999998732  11    12233  


Q ss_pred             ---EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          128 ---VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       128 ---~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                         .++..+++|++            .+.++...++..+...|.||.+|++.-..
T Consensus       150 rPVavll~~vLh~v------------~D~~dp~~iv~~l~d~lapGS~L~ish~t  192 (267)
T PF04672_consen  150 RPVAVLLVAVLHFV------------PDDDDPAGIVARLRDALAPGSYLAISHAT  192 (267)
T ss_dssp             S--EEEECT-GGGS-------------CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred             CCeeeeeeeeeccC------------CCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence               45667888877            24467889999999999999999997554

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.59  E-value=0.00013  Score=62.86  Aligned_cols=110  Identities=19%  Similarity=0.254  Sum_probs=68.4

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEccc----CCCcCCCCceeEEE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADM----LDLPFSNDCFDVVI  130 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~----~~~~~~~~~fD~V~  130 (259)
                      .+.+|||+|.|+|..+.++....+.  .++.++.|+..-++.... ..+-.+. ..+...|+    ..++. ...+++++
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl-~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i  190 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTL-AENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAI  190 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHH-HhhcccccCCCCCCccchhccCCCc-cceeehhh
Confidence            3567999999999988777776665  788899888765555443 2221111 12222232    22332 23455555


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      .   ++.+..+.         ....+...++.+..++.|||.+++++.+.+
T Consensus       191 ~---~~eLl~d~---------~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         191 V---LDELLPDG---------NEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             h---hhhhcccc---------CcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            4   44442221         122345589999999999999999998765

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.53  E-value=0.00041  Score=59.76  Aligned_cols=75  Identities=16%  Similarity=0.146  Sum_probs=60.0

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----CCCCceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~V~  130 (259)
                      .++..++|.-+|.|..+..+++..+ .+|+|+|.++.+++.+++++...+ .++.++++++.++.     ....++|.|+
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~~~vDgIl   97 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLVTKIDGIL   97 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCCCcccEEE
Confidence            4678999999999999999988743 399999999999999999887543 36889998887643     2335688887


Q ss_pred             ec
Q 025039          131 EK  132 (259)
Q Consensus       131 ~~  132 (259)
                      ..
T Consensus        98 ~D   99 (305)
T TIGR00006        98 VD   99 (305)
T ss_pred             Ee
Confidence            54

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.51  E-value=0.00036  Score=59.79  Aligned_cols=109  Identities=19%  Similarity=0.278  Sum_probs=74.2

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc-c-cCCC------cCCCC
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-D-MLDL------PFSND  124 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d-~~~~------~~~~~  124 (259)
                      .++.+.+||-+|+|+ |..+...++. |..+|+.+|+++..++.|++ +   |.+.+..... + ..++      .....
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g~~  241 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALGKK  241 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcccc
Confidence            456889999999999 8888888776 55599999999999999998 3   3322222111 1 1110      12223


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcccccccc
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFF  188 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  188 (259)
                      .+|+.+.-.                     .....++.+...+++||.++++.++.+...-++.
T Consensus       242 ~~d~~~dCs---------------------G~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~  284 (354)
T KOG0024|consen  242 QPDVTFDCS---------------------GAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPII  284 (354)
T ss_pred             CCCeEEEcc---------------------CchHHHHHHHHHhccCCEEEEeccCCCccccChh
Confidence            488877432                     2345677778899999999999888765443333

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.48  E-value=0.001  Score=61.41  Aligned_cols=135  Identities=18%  Similarity=0.221  Sum_probs=87.3

Q ss_pred             hHHHHhhcccCC--CCCcEEEEcCCCCcchHHHHhcCC-----CeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccC
Q 025039           46 SHFRHLVQPHIK--PNSSVLELGCGNSRLSEGLYNDGI-----TAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADML  117 (259)
Q Consensus        46 ~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~  117 (259)
                      +.+..++...+.  +..+|+|.+||+|.+.....+...     ..++|.|+++.....|+-++-.+++.. +....+|-.
T Consensus       172 ~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl  251 (489)
T COG0286         172 REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL  251 (489)
T ss_pred             HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc
Confidence            344444443333  567999999999987776655421     269999999999999999998888752 455555544


Q ss_pred             CCc-C----CCCceeEEEecceee-eeeeCCC--C-------CCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          118 DLP-F----SNDCFDVVIEKATME-VLFVNSG--D-------PWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       118 ~~~-~----~~~~fD~V~~~~~l~-~~~~~~~--~-------~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .-+ .    ..+.||.|++++++. .-.....  .       .+...+.........++.+...|+|||+.-++.+..
T Consensus       252 ~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g  329 (489)
T COG0286         252 SNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG  329 (489)
T ss_pred             cCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence            323 1    235799999999884 1111100  0       011111122233788999999999998777665544

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.46  E-value=0.0017  Score=52.60  Aligned_cols=120  Identities=19%  Similarity=0.210  Sum_probs=69.2

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcC---CCeEEEeeCCHHHHHHHHHHHhhc------------------------------
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDG---ITAITCIDLSAVAVEKMQERLLLK------------------------------  104 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~------------------------------  104 (259)
                      .+.++.|.+||.|.++-.+.-..   ...|++.|+++++++.|++|+...                              
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            45789999999999776554432   228999999999999998876322                              


Q ss_pred             ------------CCCCeEEEEcccCCCc-----CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcc
Q 025039          105 ------------GYKEVKVLEADMLDLP-----FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVL  167 (259)
Q Consensus       105 ------------~~~~v~~~~~d~~~~~-----~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L  167 (259)
                                  +.....+.+.|+++..     ......|+|+..-++..+     ..|..+ ........+|..+..+|
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~-----t~W~g~-~~~~p~~~ml~~l~~vL  204 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEM-----TSWQGE-GSGGPVAQMLNSLAPVL  204 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCS-----SSTTS----HHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccc-----ccccCC-CCCCcHHHHHHHHHhhC
Confidence                        1223567778887721     122347999976665443     346542 23346778999999999


Q ss_pred             cCCcEEEEEecCCccc
Q 025039          168 KPDGLFISVSFGQPHF  183 (259)
Q Consensus       168 kpgG~l~~~~~~~~~~  183 (259)
                      .+++++.+++-+++..
T Consensus       205 p~~sVV~v~~k~~Ki~  220 (246)
T PF11599_consen  205 PERSVVAVSDKGRKIP  220 (246)
T ss_dssp             -TT-EEEEEESSSS--
T ss_pred             CCCcEEEEecCCcccc
Confidence            6666666654444443

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.43  E-value=0.00064  Score=54.07  Aligned_cols=117  Identities=15%  Similarity=0.215  Sum_probs=72.5

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHH------HHHHHHHhhcCCCCeEEEEcccCCCcCCCCc
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAV------EKMQERLLLKGYKEVKVLEADMLDLPFSNDC  125 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~------~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  125 (259)
                      ..++++.+|+|+=.|.|..+..++.. |+. .|+++-..+...      ...+....+..+.|+..+-.+...+. +.+.
T Consensus        44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~  122 (238)
T COG4798          44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQK  122 (238)
T ss_pred             eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCc
Confidence            45789999999999999999998876 443 676665443211      11111111222334555444444444 3456


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .|+++.....|.+...    ..    +......+...+.+.|||||++++.++.
T Consensus       123 ~d~~~~~~~yhdmh~k----~i----~~~~A~~vna~vf~~LKPGGv~~V~dH~  168 (238)
T COG4798         123 LDLVPTAQNYHDMHNK----NI----HPATAAKVNAAVFKALKPGGVYLVEDHR  168 (238)
T ss_pred             ccccccchhhhhhhcc----cc----CcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence            7887765554433111    00    2345667888899999999999998764

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=97.41  E-value=0.0011  Score=54.40  Aligned_cols=118  Identities=17%  Similarity=0.194  Sum_probs=77.2

Q ss_pred             ccccchHHHHhhc-----ccCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE
Q 025039           41 WLKDYSHFRHLVQ-----PHIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLE  113 (259)
Q Consensus        41 w~~~~~~~~~~l~-----~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~  113 (259)
                      |-.-.+.+..-+.     .+++++.+||-+|+++|....++... |+. -|+++|+|+..-...-.-++++  +||--+.
T Consensus       134 WnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIi  211 (317)
T KOG1596|consen  134 WNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPII  211 (317)
T ss_pred             eChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeee
Confidence            4444444444333     35679999999999999999999886 555 8999999976544433332222  4766677


Q ss_pred             cccCCCc---CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          114 ADMLDLP---FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       114 ~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .|+....   ..-..+|+|++.         ..        .+.+..-+.-++...||+||.+++..
T Consensus       212 EDArhP~KYRmlVgmVDvIFaD---------va--------qpdq~RivaLNA~~FLk~gGhfvisi  261 (317)
T KOG1596|consen  212 EDARHPAKYRMLVGMVDVIFAD---------VA--------QPDQARIVALNAQYFLKNGGHFVISI  261 (317)
T ss_pred             ccCCCchheeeeeeeEEEEecc---------CC--------CchhhhhhhhhhhhhhccCCeEEEEE
Confidence            7876522   122356666642         11        22445556667889999999999863

>PHA01634 hypothetical protein

Probab=97.31  E-value=0.0014  Score=48.50  Aligned_cols=70  Identities=9%  Similarity=0.056  Sum_probs=53.1

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVI  130 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  130 (259)
                      .+.+|+|+|++.|..+++++-+|...|+++++++...+..+++++.+.+-+-.+....+..   .=+.||+..
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~---~Y~~~Di~~   97 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNG---EYEDVDIFV   97 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccc---cCCCcceEE
Confidence            5789999999999999999999998999999999999999998876543221222222222   224678766

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.19  E-value=0.0012  Score=58.76  Aligned_cols=101  Identities=22%  Similarity=0.280  Sum_probs=73.9

Q ss_pred             CCCcEEEEcCCCCcchHHHHhc--CCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCCCc-CCCCceeEEEec
Q 025039           58 PNSSVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLP-FSNDCFDVVIEK  132 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~-~~~~~fD~V~~~  132 (259)
                      .+.+|||.=+|+|.-++..+..  +..+|+.-|+|+++++.+++|++.+++..  +.+.+.|+..+- .....||+|=..
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD  128 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD  128 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence            4568999999999888877766  33499999999999999999999999876  778888876532 245789998532


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                       +|                  ..+..+|+.+.+.++.||.|.+..
T Consensus       129 -Pf------------------GSp~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  129 -PF------------------GSPAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             --S------------------S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CC------------------CCccHhHHHHHHHhhcCCEEEEec
Confidence             11                  344679999999999999999863

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.17  E-value=0.0011  Score=57.15  Aligned_cols=122  Identities=22%  Similarity=0.215  Sum_probs=84.6

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHH-------HHHHHhhcCCCC--eEEEEcccCCCcC-CCC
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEK-------MQERLLLKGYKE--VKVLEADMLDLPF-SND  124 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~-------a~~~~~~~~~~~--v~~~~~d~~~~~~-~~~  124 (259)
                      .+.+|+.|+|.-.|||.++...+..|. -|+|.||+-.++..       .+.+++..|...  +.++.+|....++ ...
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~  283 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL  283 (421)
T ss_pred             ccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcc
Confidence            456899999999999999999999988 89999999888772       455677666432  6777888877553 356


Q ss_pred             ceeEEEecceeeee---------------eeCCCCCCCCCch---hHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          125 CFDVVIEKATMEVL---------------FVNSGDPWNPQPE---TVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       125 ~fD~V~~~~~l~~~---------------~~~~~~~~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .||.|+|.+++..-               -.+...-+-|..+   -......+|.-..+.|..||++++-.
T Consensus       284 ~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~  354 (421)
T KOG2671|consen  284 KFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL  354 (421)
T ss_pred             eeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence            89999998876311               0000000111111   12234567777889999999999753

>PRK11524 putative methyltransferase; Provisional

Probab=97.11  E-value=0.0011  Score=56.85  Aligned_cols=55  Identities=15%  Similarity=0.161  Sum_probs=48.3

Q ss_pred             HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh
Q 025039           47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL  102 (259)
Q Consensus        47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~  102 (259)
                      .+..++.....+|+.|||..||+|..+..+.+.|- +.+|+|++++.++.|++++.
T Consensus       197 L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        197 LLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHH
Confidence            34556666667999999999999999999988887 99999999999999999975

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.08  E-value=0.00087  Score=59.32  Aligned_cols=102  Identities=24%  Similarity=0.259  Sum_probs=68.6

Q ss_pred             CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc-ccCC--CcCC-CCceeEEE
Q 025039           57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLD--LPFS-NDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~--~~~~-~~~fD~V~  130 (259)
                      .++.+|+-+|||+ |.++..+++. |..+|+++|.++..++.|++.....   .+..... +...  .... ...+|+++
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t~g~g~D~vi  243 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELTGGRGADVVI  243 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHhCCCCCCEEE
Confidence            3445899999999 9998877776 5459999999999999999854211   0111111 1100  0111 23699988


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      -...                     ....+..+.++++|||.++++......
T Consensus       244 e~~G---------------------~~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         244 EAVG---------------------SPPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             ECCC---------------------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence            4321                     235889999999999999998765433

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.98  E-value=0.0013  Score=54.01  Aligned_cols=53  Identities=15%  Similarity=0.177  Sum_probs=42.4

Q ss_pred             hHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHH
Q 025039           46 SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQE   99 (259)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~   99 (259)
                      .-+..++.....++..|||.-||+|..+.++.+.|- +.+|+|++++.++.|++
T Consensus       179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHhhhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence            345566666678899999999999999999999988 89999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.95  E-value=0.0012  Score=58.64  Aligned_cols=57  Identities=19%  Similarity=0.299  Sum_probs=50.2

Q ss_pred             CcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEccc
Q 025039           60 SSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADM  116 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~  116 (259)
                      ..|||+|+|||.++...++.|...|++++.-..|.+.|++....+|+.+ |.++..--
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS  125 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS  125 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccc
Confidence            4689999999999999999997799999999999999999999998865 77775433

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.95  E-value=0.0028  Score=55.29  Aligned_cols=97  Identities=20%  Similarity=0.252  Sum_probs=68.1

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc-cCCCcCCCCceeEEE
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-MLDLPFSNDCFDVVI  130 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~~~~~~~~~fD~V~  130 (259)
                      ..+.|+.+|+-+|+|. |.+++.+++ .|. +|+++|.+++-.+.|++.-.      ..++... -.....-.+.||+|+
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGA------d~~i~~~~~~~~~~~~~~~d~ii  234 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGA------DHVINSSDSDALEAVKEIADAII  234 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCC------cEEEEcCCchhhHHhHhhCcEEE
Confidence            3467899999999984 677888887 564 99999999999988887622      2233322 111111112499998


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ..-+                      ...+....+.|++||.++++..-
T Consensus       235 ~tv~----------------------~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         235 DTVG----------------------PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             ECCC----------------------hhhHHHHHHHHhcCCEEEEECCC
Confidence            6332                      45688889999999999998655

>PRK13699 putative methylase; Provisional

Probab=96.88  E-value=0.0029  Score=52.49  Aligned_cols=56  Identities=21%  Similarity=0.234  Sum_probs=48.0

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK  104 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~  104 (259)
                      +..++.....++..|||.-||+|..+....+.|. +++|+|++++..+.+.+++...
T Consensus       153 ~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        153 LQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence            4455555667899999999999999999988887 8999999999999999987643

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.87  E-value=0.0028  Score=52.40  Aligned_cols=77  Identities=23%  Similarity=0.309  Sum_probs=47.3

Q ss_pred             CcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh---hcC-C-----CCeEEEEcccCC-CcCCCCceeEE
Q 025039           60 SSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL---LKG-Y-----KEVKVLEADMLD-LPFSNDCFDVV  129 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~-~-----~~v~~~~~d~~~-~~~~~~~fD~V  129 (259)
                      .+|||.-+|-|..+..++..|. +|+++|-|+-+....+.-+.   ... .     .+++++++|..+ +..++.+||+|
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV  155 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV  155 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence            4899999999999999998887 89999999887666554322   111 1     258899999877 44456899999


Q ss_pred             Eecceeee
Q 025039          130 IEKATMEV  137 (259)
Q Consensus       130 ~~~~~l~~  137 (259)
                      +..++|.+
T Consensus       156 Y~DPMFp~  163 (234)
T PF04445_consen  156 YFDPMFPE  163 (234)
T ss_dssp             EE--S---
T ss_pred             EECCCCCC
Confidence            98777643

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.82  E-value=0.0031  Score=53.88  Aligned_cols=68  Identities=16%  Similarity=0.225  Sum_probs=53.6

Q ss_pred             cEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC--CCceeEEEecce
Q 025039           61 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS--NDCFDVVIEKAT  134 (259)
Q Consensus        61 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~V~~~~~  134 (259)
                      +++|+.||.|.+...+.+.|...+.++|+++.+++..+.++..     . +.++|+.++...  ...+|+++...+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-----~-~~~~Di~~~~~~~~~~~~D~l~~gpP   71 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-----K-LIEGDITKIDEKDFIPDIDLLTGGFP   71 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-----C-CccCccccCchhhcCCCCCEEEeCCC
Confidence            6899999999999999999986788999999999998887642     1 456677665422  346999997654

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.81  E-value=0.0035  Score=50.80  Aligned_cols=102  Identities=17%  Similarity=0.164  Sum_probs=54.3

Q ss_pred             CCCcEEEEcCCCCcchHHHHhc----CCC-eEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCc----C----CC
Q 025039           58 PNSSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP----F----SN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~----~----~~  123 (259)
                      ++..|+|+|.-.|..++++++.    +.. +|+|+|++-......  ..+.... ++|+++++|..+..    .    ..
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~  109 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRITFIQGDSIDPEIVDQVRELASP  109 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence            5789999999999988888763    333 999999964332221  1222122 46999999987632    1    11


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ....+|+..+.                +........|+....++++|+++++.+
T Consensus       110 ~~~vlVilDs~----------------H~~~hvl~eL~~y~plv~~G~Y~IVeD  147 (206)
T PF04989_consen  110 PHPVLVILDSS----------------HTHEHVLAELEAYAPLVSPGSYLIVED  147 (206)
T ss_dssp             -SSEEEEESS--------------------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred             CCceEEEECCC----------------ccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence            23345553221                122345677788999999999999853

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.78  E-value=0.0039  Score=52.85  Aligned_cols=120  Identities=23%  Similarity=0.317  Sum_probs=82.7

Q ss_pred             HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcC-CCeEEEeeCCHHHHHHHHHHHhhc--CC--CCeEEEEcccCCCc-
Q 025039           47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLK--GY--KEVKVLEADMLDLP-  120 (259)
Q Consensus        47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~-  120 (259)
                      .+.++....+..++++|-+|.|-|......++.. ..++..+|+++..++..++.+...  ++  +++.+.-+|...+- 
T Consensus       110 mi~~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~  189 (337)
T KOG1562|consen  110 MIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLE  189 (337)
T ss_pred             eeeccccccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHH
Confidence            3344444445667899999999999988877762 228999999999999998876544  23  35788888876532 


Q ss_pred             -CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          121 -FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       121 -~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                       .+.+.||+|+....         +|-.  |...-=.+.+.+.+.+.||++|+++...
T Consensus       190 ~~~~~~~dVii~dss---------dpvg--pa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  190 DLKENPFDVIITDSS---------DPVG--PACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             HhccCCceEEEEecC---------Cccc--hHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence             34678999985311         1100  1111224578888999999999999864

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.71  E-value=0.0051  Score=54.10  Aligned_cols=98  Identities=21%  Similarity=0.323  Sum_probs=62.1

Q ss_pred             CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecc
Q 025039           57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      .++.+||-.|||. |..+..+++. |..+++++|.+++.++.+++.    |.+. +.....++.+.....+.+|+|+...
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vid~~  243 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSFEVS  243 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEEECC
Confidence            4678999999876 7777777766 444799999999988887653    3221 1111112222111123588887531


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .                     ....+..+.++|++||.++++...
T Consensus       244 G---------------------~~~~~~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        244 G---------------------HPSSINTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             C---------------------CHHHHHHHHHHhhcCCEEEEEccC
Confidence            1                     124567788899999999987653

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.69  E-value=0.0062  Score=49.91  Aligned_cols=80  Identities=13%  Similarity=0.253  Sum_probs=54.3

Q ss_pred             CCCcEEEEcCCCCcchH--HHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-CCCC-eEEEEcccCC-----CcCCCCceeE
Q 025039           58 PNSSVLELGCGNSRLSE--GLYNDGITAITCIDLSAVAVEKMQERLLLK-GYKE-VKVLEADMLD-----LPFSNDCFDV  128 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~--~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~-v~~~~~d~~~-----~~~~~~~fD~  128 (259)
                      ++.++||||.|.--.--  -..+.|. +.+|.|+++.+++.|+..+..+ ++.+ +++....-.+     +.-..+.||+
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~  156 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA  156 (292)
T ss_pred             CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence            55789999988643222  2233456 8999999999999999998877 4433 5554321111     1123578999


Q ss_pred             EEecceeeee
Q 025039          129 VIEKATMEVL  138 (259)
Q Consensus       129 V~~~~~l~~~  138 (259)
                      ++|+++||..
T Consensus       157 tlCNPPFh~s  166 (292)
T COG3129         157 TLCNPPFHDS  166 (292)
T ss_pred             EecCCCcchh
Confidence            9999999754

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.65  E-value=0.0023  Score=52.30  Aligned_cols=104  Identities=23%  Similarity=0.278  Sum_probs=68.4

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcC--------CC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-------
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDG--------IT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-------  120 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~--------~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------  120 (259)
                      .-.+++|+++.+|..+..|.++.        ..  .+++||+.+.+           .++.|.-+++|+....       
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~  109 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIE  109 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHH
Confidence            34789999999999999887752        11  39999997631           3456777889987632       


Q ss_pred             -CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          121 -FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       121 -~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                       |..+..|+|+|.+.-+..-...-+.+    -..+-+...|.-...+|+|||.|+.-
T Consensus       110 hfggekAdlVvcDGAPDvTGlHd~DEy----~Q~qLllaAl~i~t~Vlk~Gg~FVaK  162 (294)
T KOG1099|consen  110 HFGGEKADLVVCDGAPDVTGLHDLDEY----VQAQLLLAALNIATCVLKPGGSFVAK  162 (294)
T ss_pred             HhCCCCccEEEeCCCCCccccccHHHH----HHHHHHHHHHHHHhheecCCCeeehh
Confidence             56678999999875432200000000    01123345666677899999999964

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.50  E-value=0.0025  Score=57.84  Aligned_cols=99  Identities=14%  Similarity=0.283  Sum_probs=63.8

Q ss_pred             CcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-CcCCCCceeEEEecceee
Q 025039           60 SSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKATME  136 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~~~~l~  136 (259)
                      ..|+|+.+|.|.++.+|.+...-  +|+-+ ..+..+...-++    |+   --+..|+.+ ++.-..+||+|-+.+.|.
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR----GL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs  438 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR----GL---IGVYHDWCEAFSTYPRTYDLLHADGLFS  438 (506)
T ss_pred             eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----cc---chhccchhhccCCCCcchhheehhhhhh
Confidence            56999999999999999876432  23322 122222222222    22   112335443 333347899999988876


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ..            .+.-+...++-++-|+|+|+|.+++-+.
T Consensus       439 ~~------------~~rC~~~~illEmDRILRP~G~~iiRD~  468 (506)
T PF03141_consen  439 LY------------KDRCEMEDILLEMDRILRPGGWVIIRDT  468 (506)
T ss_pred             hh------------cccccHHHHHHHhHhhcCCCceEEEecc
Confidence            54            1334578899999999999999998643

; GO: 0008168 methyltransferase activity

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.45  E-value=0.019  Score=53.23  Aligned_cols=103  Identities=17%  Similarity=0.267  Sum_probs=65.1

Q ss_pred             CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEE--Ecc------cCCCc------
Q 025039           57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVL--EAD------MLDLP------  120 (259)
Q Consensus        57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~--~~d------~~~~~------  120 (259)
                      .++.+|+-+|||. |..++..++. |. +|+++|.+++.++.+++.    |...+.+-  ..+      +..+.      
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA~~v~i~~~e~~~~~~gya~~~s~~~~~~  237 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GAEFLELDFEEEGGSGDGYAKVMSEEFIKA  237 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCeEEEeccccccccccchhhhcchhHHHH
Confidence            3689999999999 8888777665 65 899999999999988763    32111110  000      00000      


Q ss_pred             ----CC--CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          121 ----FS--NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       121 ----~~--~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                          +.  ...+|+|+......               ....+.-+.++..+.+||||+++.+...
T Consensus       238 ~~~~~~~~~~gaDVVIetag~p---------------g~~aP~lit~~~v~~mkpGgvIVdvg~~  287 (509)
T PRK09424        238 EMALFAEQAKEVDIIITTALIP---------------GKPAPKLITAEMVASMKPGSVIVDLAAE  287 (509)
T ss_pred             HHHHHHhccCCCCEEEECCCCC---------------cccCcchHHHHHHHhcCCCCEEEEEccC
Confidence                01  13589998643221               0011223358999999999999987653

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.42  E-value=0.022  Score=47.58  Aligned_cols=104  Identities=17%  Similarity=0.091  Sum_probs=62.6

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-----CCC-CeEEEEcccCCC---cCCCCc-eeE
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-----GYK-EVKVLEADMLDL---PFSNDC-FDV  128 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~-~v~~~~~d~~~~---~~~~~~-fD~  128 (259)
                      ...|||+|+|+|..++.++..+..+++..|.-. .++..+.+...+     ++. .+.+...++...   .+.... +|+
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl  165 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL  165 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence            457999999999888887776555888888643 444443332222     111 344433333321   122223 899


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |+++.++...               .....++..++..|..+|.+++...
T Consensus       166 ilasDvvy~~---------------~~~e~Lv~tla~ll~~~~~i~l~~~  200 (248)
T KOG2793|consen  166 ILASDVVYEE---------------ESFEGLVKTLAFLLAKDGTIFLAYP  200 (248)
T ss_pred             EEEeeeeecC---------------CcchhHHHHHHHHHhcCCeEEEEEe
Confidence            9987766322               3445677778888888886655543

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.39  E-value=0.0083  Score=52.49  Aligned_cols=99  Identities=19%  Similarity=0.194  Sum_probs=75.6

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-CCCCceeEEEecceee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKATME  136 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l~  136 (259)
                      +.+|||.-+|+|.=++..+..... +++.-|+||++++.+++|++.+...+..++..|+..+- .....||+|=. .+| 
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi-DPF-  130 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI-DPF-  130 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec-CCC-
Confidence            679999999999988888777555 89999999999999999999884445666667765532 12367888642 222 


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                                       ..+..+++.+.+.++.||++.+.
T Consensus       131 -----------------GSPaPFlDaA~~s~~~~G~l~vT  153 (380)
T COG1867         131 -----------------GSPAPFLDAALRSVRRGGLLCVT  153 (380)
T ss_pred             -----------------CCCchHHHHHHHHhhcCCEEEEE
Confidence                             22346899999999999999985

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=96.24  E-value=0.0086  Score=54.61  Aligned_cols=101  Identities=20%  Similarity=0.403  Sum_probs=73.5

Q ss_pred             CCcEEEEcCCCCcchHHHHhc---CC-C-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEec
Q 025039           59 NSSVLELGCGNSRLSEGLYND---GI-T-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~---~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      ...|+-+|+|-|-+.....+.   .. . +++++|-+|.++-..+.+ .....+ .|+++..|+.+++.+.++.|++++-
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE  446 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDNRVTIISSDMRKWNAPREQADIIVSE  446 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcCeeEEEeccccccCCchhhccchHHH
Confidence            346889999999877655443   11 2 899999999998877653 222333 4999999999988556899998853


Q ss_pred             --ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          133 --ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       133 --~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                        +.|       |        +-+--.+.|..+.+.|||+|+.+=
T Consensus       447 LLGSF-------G--------DNELSPECLDG~q~fLkpdgIsIP  476 (649)
T KOG0822|consen  447 LLGSF-------G--------DNELSPECLDGAQKFLKPDGISIP  476 (649)
T ss_pred             hhccc-------c--------CccCCHHHHHHHHhhcCCCceEcc
Confidence              222       2        123446899999999999998874

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.21  E-value=0.0013  Score=50.37  Aligned_cols=58  Identities=21%  Similarity=0.298  Sum_probs=46.5

Q ss_pred             eEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          109 VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       109 v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +.+++-......|.+++.|+|++..+++|+             ..+....++++.++.|||||++-+..+.
T Consensus        31 vdlvc~As~e~~F~dns~d~iyaeHvlEHl-------------t~~Eg~~alkechr~Lrp~G~LriAvPd   88 (185)
T COG4627          31 VDLVCRASNESMFEDNSVDAIYAEHVLEHL-------------TYDEGTSALKECHRFLRPGGKLRIAVPD   88 (185)
T ss_pred             cchhhhhhhhccCCCcchHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence            444444444567888999999999999998             4467788999999999999999987654

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.19  E-value=0.0035  Score=45.11  Aligned_cols=32  Identities=31%  Similarity=0.394  Sum_probs=28.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCC
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLS   90 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s   90 (259)
                      +....+|+|||+|.+...|.+.|+ .-.|+|..
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence            456899999999999999999999 88999975

; GO: 0008168 methyltransferase activity

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=96.17  E-value=0.0028  Score=45.86  Aligned_cols=43  Identities=16%  Similarity=0.316  Sum_probs=32.9

Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      .||+|+|..+--.+..+         .+++.+..+++.+.+.|+|||.+++.
T Consensus         1 ~yDvilclSVtkWIHLn---------~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLN---------WGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             -EEEEEEES-HHHHHHH---------HHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEEEEeeEEEEec---------CcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            48999997765433222         36678999999999999999999985

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.01  E-value=0.014  Score=50.38  Aligned_cols=76  Identities=17%  Similarity=0.210  Sum_probs=55.5

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-CCCceeE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-SNDCFDV  128 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~fD~  128 (259)
                      ..++..++|.--|.|..+..+++..+. +++|+|-++.+++.+++++.... +++.++++++.++.     . ....+|-
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l~~~~~~~~~dg   96 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYLKELNGINKVDG   96 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHHHHTTTTS-EEE
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHHHHccCCCccCE
Confidence            346789999999999999999988555 99999999999999999887553 46999999887743     2 3357888


Q ss_pred             EEec
Q 025039          129 VIEK  132 (259)
Q Consensus       129 V~~~  132 (259)
                      |+..
T Consensus        97 iL~D  100 (310)
T PF01795_consen   97 ILFD  100 (310)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            8753

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=96.00  E-value=0.01  Score=50.96  Aligned_cols=109  Identities=20%  Similarity=0.255  Sum_probs=74.2

Q ss_pred             CcEEEEcCCCCcchHHHHhcC--------------------CC-eEEEeeCCH--HHHHHHHHHHhhc------------
Q 025039           60 SSVLELGCGNSRLSEGLYNDG--------------------IT-AITCIDLSA--VAVEKMQERLLLK------------  104 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~--------------------~~-~v~~vD~s~--~~~~~a~~~~~~~------------  104 (259)
                      .+||.||.|.|.-...++...                    .. .++.+|+.+  ..+......+...            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            699999999987666665432                    11 789999874  4455555444332            


Q ss_pred             -CC----CCeEEEEcccCCCcCCC-------CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcE
Q 025039          105 -GY----KEVKVLEADMLDLPFSN-------DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL  172 (259)
Q Consensus       105 -~~----~~v~~~~~d~~~~~~~~-------~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  172 (259)
                       ..    =++.|.+.|+..+..++       ...++|....+++.+|..          ....-.++|.++-..++||..
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~----------s~~kTt~FLl~Lt~~~~~Gsl  237 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFST----------SISKTTKFLLRLTDICPPGSL  237 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhc----------ChHHHHHHHHHHHhhcCCCcE
Confidence             00    13677888887754211       246777766666666543          456778999999999999999


Q ss_pred             EEEEec
Q 025039          173 FISVSF  178 (259)
Q Consensus       173 l~~~~~  178 (259)
                      |++++.
T Consensus       238 LLVvDS  243 (315)
T PF11312_consen  238 LLVVDS  243 (315)
T ss_pred             EEEEcC
Confidence            999863

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=95.98  E-value=0.06  Score=47.36  Aligned_cols=127  Identities=14%  Similarity=0.190  Sum_probs=67.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc------------C----CC-eEEEeeCCHHHHHHHHHHHhhc-----CCCC--eEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND------------G----IT-AITCIDLSAVAVEKMQERLLLK-----GYKE--VKV  111 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~------------~----~~-~v~~vD~s~~~~~~a~~~~~~~-----~~~~--v~~  111 (259)
                      .+..-+|+|+||..|..++.+...            +    +. +|+.-|.=..=....-+.+...     ..++  +..
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g   93 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG   93 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence            345578999999999988776552            1    11 6777774332222211111111     0123  344


Q ss_pred             EEcccCCCcCCCCceeEEEecceeeeeeeCCC-------CCCCCC--------chh---------HHHHHHHHHHHHhcc
Q 025039          112 LEADMLDLPFSNDCFDVVIEKATMEVLFVNSG-------DPWNPQ--------PET---------VTKVMAMLEGVHRVL  167 (259)
Q Consensus       112 ~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~-------~~~~~~--------~~~---------~~~~~~~l~~~~~~L  167 (259)
                      +.+.+..--+|.++.|++++..++|.+-.-+.       ..|++.        +..         ..|...+|+.=++-|
T Consensus        94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL  173 (334)
T PF03492_consen   94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL  173 (334)
T ss_dssp             EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            56777765578899999999999988743221       123321        111         234455666667789


Q ss_pred             cCCcEEEEEecCCcc
Q 025039          168 KPDGLFISVSFGQPH  182 (259)
Q Consensus       168 kpgG~l~~~~~~~~~  182 (259)
                      +|||++++..++.+.
T Consensus       174 v~GG~mvl~~~gr~~  188 (334)
T PF03492_consen  174 VPGGRMVLTFLGRDE  188 (334)
T ss_dssp             EEEEEEEEEEEE-ST
T ss_pred             ccCcEEEEEEeeccc
Confidence            999999998876654

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=95.94  E-value=0.12  Score=46.14  Aligned_cols=124  Identities=15%  Similarity=0.207  Sum_probs=68.8

Q ss_pred             CCcEEEEcCCCCcchHHHHhc------------C---CC-eEEEeeCCHHHHHHHHHHHhh--------------cCCCC
Q 025039           59 NSSVLELGCGNSRLSEGLYND------------G---IT-AITCIDLSAVAVEKMQERLLL--------------KGYKE  108 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~------------~---~~-~v~~vD~s~~~~~~a~~~~~~--------------~~~~~  108 (259)
                      ..+|+|+|||+|.+++.+...            +   +. +|..-|.-..-....-+.+..              .+...
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            568999999999887655331            1   12 566666432222211111110              11011


Q ss_pred             --eEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCC-------CCCCC--------ch--------hHHHHHHHHHHH
Q 025039          109 --VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGD-------PWNPQ--------PE--------TVTKVMAMLEGV  163 (259)
Q Consensus       109 --v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~-------~~~~~--------~~--------~~~~~~~~l~~~  163 (259)
                        +..+.+.+..--+|.++.+++++...+|.+-.-+..       .|++.        +.        -..|...+|+.=
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R  223 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR  223 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              222335555544778899999999888876322111       12210        00        012344566666


Q ss_pred             HhcccCCcEEEEEecCCcc
Q 025039          164 HRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       164 ~~~LkpgG~l~~~~~~~~~  182 (259)
                      ++-|.|||++++...+.+.
T Consensus       224 a~ELvpGG~mvl~~~Gr~~  242 (386)
T PLN02668        224 AQEMKRGGAMFLVCLGRTS  242 (386)
T ss_pred             HHHhccCcEEEEEEecCCC
Confidence            7789999999999877653

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=95.91  E-value=0.0062  Score=47.10  Aligned_cols=108  Identities=19%  Similarity=0.277  Sum_probs=66.7

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-CcCCCCceeEEEecceee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-LPFSNDCFDVVIEKATME  136 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~fD~V~~~~~l~  136 (259)
                      +++.+-+|+..=..-....+.|..++..+|.++--++.-   +.    ++ .++...|+.+ .....++||++.|..+++
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~---~~----dr~ssi~p~df~~~~~~y~~~fD~~as~~siE   74 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEE---FR----DRLSSILPVDFAKNWQKYAGSFDFAASFSSIE   74 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcc---cc----cccccccHHHHHHHHHHhhccchhhheechhc
Confidence            567888988876666666677877899999875221111   00    11 1222223321 112246899999988887


Q ss_pred             eeee-CCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          137 VLFV-NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       137 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |.-. ..|+|..|     ....+.+.++..+|||||.|++..+
T Consensus        75 h~GLGRYGDPidp-----~Gdl~~m~~i~~vLK~GG~L~l~vP  112 (177)
T PF03269_consen   75 HFGLGRYGDPIDP-----IGDLRAMAKIKCVLKPGGLLFLGVP  112 (177)
T ss_pred             cccccccCCCCCc-----cccHHHHHHHHHhhccCCeEEEEee
Confidence            7621 12333322     3335677889999999999999655

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=95.89  E-value=0.049  Score=46.57  Aligned_cols=74  Identities=18%  Similarity=0.204  Sum_probs=60.1

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----CCCCceeEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVV  129 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~V  129 (259)
                      .++...+|.--|.|..+..+++.++.  +++++|-++.+++.|++++...+ +++.+++.++.++.     ...+.+|-|
T Consensus        22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~i~~vDGi  100 (314)
T COG0275          22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELGIGKVDGI  100 (314)
T ss_pred             CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcCCCceeEE
Confidence            46789999999999999999998764  79999999999999999988765 47999998876643     223467766


Q ss_pred             Ee
Q 025039          130 IE  131 (259)
Q Consensus       130 ~~  131 (259)
                      +.
T Consensus       101 L~  102 (314)
T COG0275         101 LL  102 (314)
T ss_pred             EE
Confidence            53

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=95.85  E-value=0.068  Score=45.13  Aligned_cols=102  Identities=21%  Similarity=0.332  Sum_probs=77.8

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC---CCceeEEEecc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS---NDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~~  133 (259)
                      .|+.|+-+| -.-..+++++-.+.. ++..+|+++..++...+.+...|+.++..+..|+.+ |++   ...||+.+..+
T Consensus       152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiTDP  229 (354)
T COG1568         152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFITDP  229 (354)
T ss_pred             CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeecCc
Confidence            467899999 444455555555544 999999999999999999999999889999999877 322   25799988644


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC---cEEEEEe
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD---GLFISVS  177 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~  177 (259)
                      +                +.....+.++.+-...||.-   |++.+..
T Consensus       230 p----------------eTi~alk~FlgRGI~tLkg~~~aGyfgiT~  260 (354)
T COG1568         230 P----------------ETIKALKLFLGRGIATLKGEGCAGYFGITR  260 (354)
T ss_pred             h----------------hhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence            3                46677888888888888876   7777653

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.83  E-value=0.027  Score=49.66  Aligned_cols=96  Identities=20%  Similarity=0.245  Sum_probs=59.2

Q ss_pred             CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeC---CHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEe
Q 025039           57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDL---SAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIE  131 (259)
Q Consensus        57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~---s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  131 (259)
                      .++.+||-+|+|. |.++..+++. |. ++++++.   ++...+.+++.    |...+.....+..+.. ....+|+|+.
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~----Ga~~v~~~~~~~~~~~-~~~~~d~vid  244 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEEL----GATYVNSSKTPVAEVK-LVGEFDLIIE  244 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHc----CCEEecCCccchhhhh-hcCCCCEEEE
Confidence            4678999999987 7777777665 55 8999986   67766666542    3211111111111101 1246888875


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ...                     ....+....+.|++||.++++...
T Consensus       245 ~~g---------------------~~~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         245 ATG---------------------VPPLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             CcC---------------------CHHHHHHHHHHccCCcEEEEEecC
Confidence            321                     123678888999999999887653

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=95.62  E-value=0.3  Score=40.71  Aligned_cols=105  Identities=25%  Similarity=0.300  Sum_probs=70.0

Q ss_pred             CCCcEEEEcCCCCcchHHHHhc----CCC-eEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCC-Cc-CCCCceeE
Q 025039           58 PNSSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLD-LP-FSNDCFDV  128 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~-~~-~~~~~fD~  128 (259)
                      .++..+|+|+|+..-+..|...    +.. +++.+|+|...++...+.+.. .++.  +.-+++|... +. .+..+--+
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~-~y~~l~v~~l~~~~~~~La~~~~~~~Rl  156 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILR-EYPGLEVNALCGDYELALAELPRGGRRL  156 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHH-hCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence            5789999999998877766554    444 899999999887765544322 2233  4556677643 11 22222222


Q ss_pred             -EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          129 -VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       129 -V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                       ++...++..+             ++.....++..+...|+||-++++-
T Consensus       157 ~~flGStlGN~-------------tp~e~~~Fl~~l~~a~~pGd~~LlG  192 (321)
T COG4301         157 FVFLGSTLGNL-------------TPGECAVFLTQLRGALRPGDYFLLG  192 (321)
T ss_pred             EEEecccccCC-------------ChHHHHHHHHHHHhcCCCcceEEEe
Confidence             3333444444             5577889999999999999999973

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.61  E-value=0.021  Score=49.56  Aligned_cols=66  Identities=20%  Similarity=0.349  Sum_probs=52.2

Q ss_pred             cEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEEecce
Q 025039           61 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKAT  134 (259)
Q Consensus        61 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~  134 (259)
                      +++|+.||.|.+...+.+.|...+.++|+++.+.+.-+.++.       ....+|+.++.   ++. .+|+++...+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~-~~D~l~ggpP   70 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK-DVDLLIGGPP   70 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH-T-SEEEEE--
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc-cceEEEeccC
Confidence            689999999999999999998788999999999999888863       66788888764   333 5999886543

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.53  E-value=0.047  Score=47.98  Aligned_cols=95  Identities=14%  Similarity=0.178  Sum_probs=60.9

Q ss_pred             CCCCCcEEEEcCCC-CcchHHHHhc--CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           56 IKPNSSVLELGCGN-SRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        56 ~~~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      +.++.+||-+|||. |.++..++++  |..+++++|.+++.++.+++ +   +  .....  +  ++. ....+|+|+..
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~--~~~~~--~--~~~-~~~g~d~viD~  229 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D--ETYLI--D--DIP-EDLAVDHAFEC  229 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C--ceeeh--h--hhh-hccCCcEEEEC
Confidence            45789999999987 7776666653  33489999999988887764 1   2  11111  1  111 11248888842


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ..-                  ......+....++|++||.++++...
T Consensus       230 ~G~------------------~~~~~~~~~~~~~l~~~G~iv~~G~~  258 (341)
T cd08237         230 VGG------------------RGSQSAINQIIDYIRPQGTIGLMGVS  258 (341)
T ss_pred             CCC------------------CccHHHHHHHHHhCcCCcEEEEEeec
Confidence            110                  00235678888999999999987653

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=95.51  E-value=0.0077  Score=51.19  Aligned_cols=73  Identities=15%  Similarity=0.150  Sum_probs=57.4

Q ss_pred             CCCcEEEEcCCCCcchH-HHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEe
Q 025039           58 PNSSVLELGCGNSRLSE-GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIE  131 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~-~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~  131 (259)
                      .+..|+|+=+|-|+++. .+..+|...|+++|.+|..++..+++++.+++.. ..++.+|-.. +.++...|-|..
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~~~AdrVnL  268 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPRLRADRVNL  268 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCccccchheee
Confidence            45789999999999999 8888888899999999999999999998886543 3445555444 334567777763

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=95.48  E-value=0.013  Score=49.55  Aligned_cols=39  Identities=26%  Similarity=0.390  Sum_probs=33.8

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHH
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVE   95 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~   95 (259)
                      -.+++|||+|||+|...+.+...|...+...|++.+.++
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            368899999999999999998888558999999988773

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=95.27  E-value=0.025  Score=50.34  Aligned_cols=66  Identities=15%  Similarity=0.254  Sum_probs=55.7

Q ss_pred             hcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCC
Q 025039           52 VQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLD  118 (259)
Q Consensus        52 l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~  118 (259)
                      +....++|..|.|+.||-|-.++-++..+. +|++.|.++++++..+.+++.+.++.  +.+..+|+.+
T Consensus       243 lsg~fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~  310 (495)
T KOG2078|consen  243 LSGLFKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD  310 (495)
T ss_pred             HhhccCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence            344667899999999999999999999986 99999999999999999998887643  6666666644

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.26  E-value=0.012  Score=53.38  Aligned_cols=101  Identities=21%  Similarity=0.227  Sum_probs=77.0

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC----cCCCCceeEEE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL----PFSNDCFDVVI  130 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~----~~~~~~fD~V~  130 (259)
                      ++.+|||.=|++|.-++..+...++  ++++.|.++.+++..+++++.++..+ +...+.|+..+    +-....||+|=
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID  188 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID  188 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence            5678999999999999988877444  89999999999999999999887655 55666666542    12235799976


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ..+ +                  ...-.+|+.+.+.++.||.|++..
T Consensus       189 LDP-y------------------Gs~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  189 LDP-Y------------------GSPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             cCC-C------------------CCccHHHHHHHHHhhcCCEEEEEe
Confidence            321 1                  223478999999999999999853

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.05  E-value=0.058  Score=46.67  Aligned_cols=89  Identities=16%  Similarity=0.147  Sum_probs=58.0

Q ss_pred             CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .++.+||-+|||. |.++..+++. |...++++|.++..++.+...    .     ++  |..+.  ....+|+|+....
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~-----~i--~~~~~--~~~g~Dvvid~~G  209 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E-----VL--DPEKD--PRRDYRAIYDASG  209 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c-----cc--Chhhc--cCCCCCEEEECCC
Confidence            3567899999987 8887777765 554577889888777665432    1     01  11110  1246898885321


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                                           ....++.+.+.|+++|+++++...
T Consensus       210 ---------------------~~~~~~~~~~~l~~~G~iv~~G~~  233 (308)
T TIGR01202       210 ---------------------DPSLIDTLVRRLAKGGEIVLAGFY  233 (308)
T ss_pred             ---------------------CHHHHHHHHHhhhcCcEEEEEeec
Confidence                                 124567788899999999987653

>PTZ00357 methyltransferase; Provisional

Probab=94.96  E-value=0.085  Score=49.98  Aligned_cols=98  Identities=20%  Similarity=0.309  Sum_probs=62.3

Q ss_pred             CcEEEEcCCCCcchHHHHhc----CCC-eEEEeeCCHHHHHHHHHHH-hhcCC--------CCeEEEEcccCCCcCC---
Q 025039           60 SSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERL-LLKGY--------KEVKVLEADMLDLPFS---  122 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~-~~~~~--------~~v~~~~~d~~~~~~~---  122 (259)
                      ..|+.+|+|-|-+.....+.    +.. ++++||-++..+.....+. ....+        ..|+++..|+..+..+   
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            35899999999876655443    445 8999999966544444332 11122        1389999999886422   


Q ss_pred             --------CCceeEEEec--ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccC----CcE
Q 025039          123 --------NDCFDVVIEK--ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP----DGL  172 (259)
Q Consensus       123 --------~~~fD~V~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp----gG~  172 (259)
                              -+.+|+|++-  ++|       |        +-+.-.+.|..+.+.||+    +|+
T Consensus       782 ~s~~~P~~~gKaDIVVSELLGSF-------G--------DNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVSELLGSL-------G--------DNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccccccccccccceehHhhhccc-------c--------cccCCHHHHHHHHHhhhhhcccccc
Confidence                    1369999862  333       2        112335677777777765    665

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=94.94  E-value=0.26  Score=45.91  Aligned_cols=121  Identities=15%  Similarity=0.278  Sum_probs=74.0

Q ss_pred             CCCcEEEEcCCCCcchHHHHhc---CC--CeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEcccCCC-cC-CCCceeE
Q 025039           58 PNSSVLELGCGNSRLSEGLYND---GI--TAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDL-PF-SNDCFDV  128 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~-~~-~~~~fD~  128 (259)
                      +++.|.|+.||+|.+.......   +.  ..++|.+....+...++.++..++..  ......+|-..- .. ....||+
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~  296 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV  296 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence            5578999999999988754331   21  26999999999999999886555432  223333443221 11 2356999


Q ss_pred             EEecceeeeeee-C------CCCCCC-CC--chhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          129 VIEKATMEVLFV-N------SGDPWN-PQ--PETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       129 V~~~~~l~~~~~-~------~~~~~~-~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |++++++..... .      ....++ -+  +.....-..++.....+|++||...++-.
T Consensus       297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~  356 (501)
T TIGR00497       297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF  356 (501)
T ss_pred             EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence            999988754211 0      000010 00  11123345677888889999998766543

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.68  E-value=0.091  Score=48.68  Aligned_cols=100  Identities=21%  Similarity=0.311  Sum_probs=62.6

Q ss_pred             CCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-----------------
Q 025039           58 PNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-----------------  118 (259)
Q Consensus        58 ~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----------------  118 (259)
                      ++.+|+-+|||. |..+..++.. |. .|+++|.++..++.+++.    +.   .++..|..+                 
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~l----Ga---~~v~v~~~e~g~~~~gYa~~~s~~~~  234 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSM----GA---EFLELDFKEEGGSGDGYAKVMSEEFI  234 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC---eEEeccccccccccccceeecCHHHH
Confidence            568999999998 7777766655 65 799999999987777652    32   221212100                 


Q ss_pred             ------CcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          119 ------LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       119 ------~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                            ++..-..+|+|+....+.               +.+.+.-+.++..+.+|||++++=+...+
T Consensus       235 ~~~~~~~~e~~~~~DIVI~Talip---------------G~~aP~Lit~emv~~MKpGsvIVDlA~d~  287 (511)
T TIGR00561       235 AAEMELFAAQAKEVDIIITTALIP---------------GKPAPKLITEEMVDSMKAGSVIVDLAAEQ  287 (511)
T ss_pred             HHHHHHHHHHhCCCCEEEECcccC---------------CCCCCeeehHHHHhhCCCCCEEEEeeeCC
Confidence                  110124589998644221               11122336777889999999988655444

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.65  E-value=0.054  Score=48.12  Aligned_cols=99  Identities=17%  Similarity=0.257  Sum_probs=61.2

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-C-cCCCCceeEE
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L-PFSNDCFDVV  129 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~-~~~~~~fD~V  129 (259)
                      .+.++.+||-.|+|. |..+..+++. |..+|+++|.++..++.+++.    +.+. +.....+..+ + ....+.+|+|
T Consensus       188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~i~~~~~~g~d~v  263 (371)
T cd08281         188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GATATVNAGDPNAVEQVRELTGGGVDYA  263 (371)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCceEeCCCchhHHHHHHHHhCCCCCEE
Confidence            356788999999876 6677767665 543699999999988877653    3211 1111111111 1 0112368988


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +....                     ....+....+.|+++|.++++..
T Consensus       264 id~~G---------------------~~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         264 FEMAG---------------------SVPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             EECCC---------------------ChHHHHHHHHHHhcCCEEEEEcc
Confidence            84211                     12456777889999999998654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK11524 putative methyltransferase; Provisional

Probab=94.48  E-value=0.073  Score=45.68  Aligned_cols=69  Identities=16%  Similarity=0.345  Sum_probs=44.4

Q ss_pred             CeEEEEcccCCC--cCCCCceeEEEecceeeee--eeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          108 EVKVLEADMLDL--PFSNDCFDVVIEKATMEVL--FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       108 ~v~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +..++++|..+.  .+++++||+|++++++..-  +.+....|. ..+...-....+.++.++|||||.+++..
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWK-EDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCccccccccccccccc-HHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            357788888773  3567899999999887431  111111121 01112234678999999999999999863

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=94.34  E-value=0.089  Score=44.30  Aligned_cols=45  Identities=20%  Similarity=0.293  Sum_probs=34.9

Q ss_pred             CCcEEEEcCCCCcchHHHHhcC----C----C-eEEEeeCCHHHHHHHHHHHhh
Q 025039           59 NSSVLELGCGNSRLSEGLYNDG----I----T-AITCIDLSAVAVEKMQERLLL  103 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~----~----~-~v~~vD~s~~~~~~a~~~~~~  103 (259)
                      +.+|+|+|+|+|.++..+++..    +    . +++.+|+|+.+.+.-++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            4799999999999998887741    1    1 799999999999888888765

; PDB: 4F3N_A 1ZKD_B.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=94.32  E-value=0.22  Score=44.57  Aligned_cols=117  Identities=21%  Similarity=0.289  Sum_probs=67.3

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc-cCC-C-cC-CCCceeE
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-MLD-L-PF-SNDCFDV  128 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~~-~-~~-~~~~fD~  128 (259)
                      .+.++.+||..|||. |..+..+++.... ++++++.+++..+.+++..   +...+.....+ +.+ + .+ ....+|+
T Consensus       181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~~~D~  257 (386)
T cd08283         181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGRGPDV  257 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCCCCCE
Confidence            345788999999988 8888888777443 6999999999988887752   11111111111 111 1 11 2236898


Q ss_pred             EEecceeeeeeeCCCCCCCCC----chhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          129 VIEKATMEVLFVNSGDPWNPQ----PETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |+..-.-+..    ...|...    +....+....+..+.+.|+|+|.++.+..
T Consensus       258 vld~vg~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         258 CIDAVGMEAH----GSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             EEECCCCccc----ccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            8863211000    0000000    00012234578888999999999998753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=94.28  E-value=0.049  Score=48.14  Aligned_cols=99  Identities=20%  Similarity=0.231  Sum_probs=61.0

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-C-c-CCCCceeE
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L-P-FSNDCFDV  128 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~-~-~~~~~fD~  128 (259)
                      .+.++.+||-.|||. |..+..+++. |..+++++|.++...+.+++.    +.+. +.....+..+ + . .....+|+
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~i~~~~~~~g~d~  248 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GATHTVNSSGTDPVEAIRALTGGFGADV  248 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence            356789999999876 7777777765 443599999999888887542    3211 1111111111 0 0 12235898


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |+....                 .    ...+....+.+++||.++++..
T Consensus       249 vid~~g-----------------~----~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       249 VIDAVG-----------------R----PETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             EEECCC-----------------C----HHHHHHHHHHhccCCEEEEECC
Confidence            874211                 0    1356667789999999998754

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.25  E-value=0.53  Score=41.13  Aligned_cols=92  Identities=15%  Similarity=0.172  Sum_probs=59.5

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      .++++.+||-.|+|. |..+..+++. |. ++++++.+++..+.+++.    |.+.  ++.  ..+.  ..+.+|+++..
T Consensus       162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~----Ga~~--vi~--~~~~--~~~~~d~~i~~  230 (329)
T TIGR02822       162 SLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALAL----GAAS--AGG--AYDT--PPEPLDAAILF  230 (329)
T ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHh----CCce--ecc--cccc--CcccceEEEEC
Confidence            456789999999865 5566666655 55 799999998887777653    4322  111  1111  12357876532


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ..                     ....+....+.|++||.++++..
T Consensus       231 ~~---------------------~~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       231 AP---------------------AGGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             CC---------------------cHHHHHHHHHhhCCCcEEEEEec
Confidence            11                     02467888899999999998765

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=94.10  E-value=0.54  Score=40.68  Aligned_cols=98  Identities=24%  Similarity=0.366  Sum_probs=61.5

Q ss_pred             CCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc-ccCC-C-cCCCCceeEEE
Q 025039           56 IKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLD-L-PFSNDCFDVVI  130 (259)
Q Consensus        56 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~-~-~~~~~~fD~V~  130 (259)
                      +.++.+||..|+|. |..+..+++. |. ++++++.++...+.+++.    +.+.+-.... +... + ......+|+++
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~D~vi  237 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKEL----GADEVLNSLDDSPKDKKAAGLGGGFDVIF  237 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh----CCCEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence            56778999988764 7777777765 55 799999999888877542    3211111010 0000 0 12345689887


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ....                     ....+..+.+.|+++|.++.....
T Consensus       238 d~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~~  265 (338)
T cd08254         238 DFVG---------------------TQPTFEDAQKAVKPGGRIVVVGLG  265 (338)
T ss_pred             ECCC---------------------CHHHHHHHHHHhhcCCEEEEECCC
Confidence            5311                     124677888999999999987543

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=94.08  E-value=0.087  Score=45.93  Aligned_cols=67  Identities=15%  Similarity=0.225  Sum_probs=50.3

Q ss_pred             EEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC-CCCceeEEEecce
Q 025039           62 VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKAT  134 (259)
Q Consensus        62 vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~  134 (259)
                      |+|+.||.|.+...+.+.|..-+.++|+++.+++.-+.++.     + .+..+|+.++.. .-..+|+++...+
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~~~~dvl~gg~P   68 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDIPDFDILLGGFP   68 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhCCCcCEEEecCC
Confidence            68999999999999999998567789999999998888763     2 334567766541 1235899887643

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=93.87  E-value=0.33  Score=40.73  Aligned_cols=108  Identities=21%  Similarity=0.278  Sum_probs=64.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHh----cC-CC-eEEEeeC--------------------------CHHHHHHHHHHHhhcC
Q 025039           58 PNSSVLELGCGNSRLSEGLYN----DG-IT-AITCIDL--------------------------SAVAVEKMQERLLLKG  105 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~----~~-~~-~v~~vD~--------------------------s~~~~~~a~~~~~~~~  105 (259)
                      -+..|+|+||-.|..++.++.    .+ .. +++++|.                          ....++..++++...+
T Consensus        74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g  153 (248)
T PF05711_consen   74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG  153 (248)
T ss_dssp             S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred             CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence            357899999999987765433    22 22 7888881                          1124666777777666


Q ss_pred             C--CCeEEEEcccCC-Cc-CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          106 Y--KEVKVLEADMLD-LP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       106 ~--~~v~~~~~d~~~-~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      +  +++.++.+.+.+ ++ .+.+.+-++.    ++.             +--+.....|+.+...|.|||++++-+++.+
T Consensus       154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~----lD~-------------DlYesT~~aLe~lyprl~~GGiIi~DDY~~~  216 (248)
T PF05711_consen  154 LLDDNVRFVKGWFPDTLPDAPIERIALLH----LDC-------------DLYESTKDALEFLYPRLSPGGIIIFDDYGHP  216 (248)
T ss_dssp             TSSTTEEEEES-HHHHCCC-TT--EEEEE----E----------------SHHHHHHHHHHHGGGEEEEEEEEESSTTTH
T ss_pred             CCcccEEEECCcchhhhccCCCccEEEEE----Eec-------------cchHHHHHHHHHHHhhcCCCeEEEEeCCCCh
Confidence            4  358999988754 33 2223333332    211             1225567899999999999999999888764


Q ss_pred             c
Q 025039          182 H  182 (259)
Q Consensus       182 ~  182 (259)
                      .
T Consensus       217 g  217 (248)
T PF05711_consen  217 G  217 (248)
T ss_dssp             H
T ss_pred             H
Confidence            3

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=93.75  E-value=0.19  Score=45.76  Aligned_cols=115  Identities=23%  Similarity=0.213  Sum_probs=74.1

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC----Cc---CCCCceeEE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----LP---FSNDCFDVV  129 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~---~~~~~fD~V  129 (259)
                      .+..+|-+|-|.|.+...+...-+. .+++++++|.+++.+.+.+....-....+...|..+    ..   -.+..||++
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl  374 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL  374 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence            4678999999999999888776554 999999999999999987644321122333333322    11   245679998


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +..    .--.+.+...  -|...-..+.++..++..|.|.|.+++-..
T Consensus       375 ~~d----vds~d~~g~~--~pp~~fva~~~l~~~k~~l~p~g~f~inlv  417 (482)
T KOG2352|consen  375 MVD----VDSKDSHGMQ--CPPPAFVAQVALQPVKMILPPRGMFIINLV  417 (482)
T ss_pred             EEE----CCCCCcccCc--CCchHHHHHHHHHHHhhccCccceEEEEEe
Confidence            732    1101100001  112334557889999999999999998543

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=93.66  E-value=0.12  Score=38.23  Aligned_cols=85  Identities=20%  Similarity=0.174  Sum_probs=56.0

Q ss_pred             CCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC----C-c-CCCCceeEEEecceeeeeeeCC
Q 025039           69 NSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----L-P-FSNDCFDVVIEKATMEVLFVNS  142 (259)
Q Consensus        69 ~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~-~-~~~~~fD~V~~~~~l~~~~~~~  142 (259)
                      .|..+..+++....+++++|.++..++.+++.    |.  -.++..+-.+    + . .....+|+|+....        
T Consensus         2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga--~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--------   67 (130)
T PF00107_consen    2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA--DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--------   67 (130)
T ss_dssp             HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE--SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS--------
T ss_pred             hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc--cccccccccccccccccccccccceEEEEecC--------
Confidence            46677777766335999999999988888764    31  1222221111    1 1 23357999985321        


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          143 GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       143 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                                   ....++...++|+|+|.++++....
T Consensus        68 -------------~~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   68 -------------SGDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             -------------SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             -------------cHHHHHHHHHHhccCCEEEEEEccC
Confidence                         1367888999999999999987654

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=93.57  E-value=0.89  Score=35.59  Aligned_cols=106  Identities=16%  Similarity=0.160  Sum_probs=66.8

Q ss_pred             hHHHHhhcccCCCCCcEEEEcCCCCcchHHHHh-cCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC---Cc
Q 025039           46 SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYN-DGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD---LP  120 (259)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~  120 (259)
                      ..+...+.....+..+|+-+||=+-..  .+.+ .... +++.+|++..        +...+ ++ .+..-|...   ++
T Consensus        13 ~~l~~~l~~~~~~~~~iaclstPsl~~--~l~~~~~~~~~~~Lle~D~R--------F~~~~-~~-~F~fyD~~~p~~~~   80 (162)
T PF10237_consen   13 EFLARELLDGALDDTRIACLSTPSLYE--ALKKESKPRIQSFLLEYDRR--------FEQFG-GD-EFVFYDYNEPEELP   80 (162)
T ss_pred             HHHHHHHHHhcCCCCEEEEEeCcHHHH--HHHhhcCCCccEEEEeecch--------HHhcC-Cc-ceEECCCCChhhhh
Confidence            345555555555678999999876333  3333 2233 8999999964        33322 12 344445443   22


Q ss_pred             --CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          121 --FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       121 --~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                        + .++||+|++.+++  +             ..+-...+...+..++++++.+++++..
T Consensus        81 ~~l-~~~~d~vv~DPPF--l-------------~~ec~~k~a~ti~~L~k~~~kii~~Tg~  125 (162)
T PF10237_consen   81 EEL-KGKFDVVVIDPPF--L-------------SEECLTKTAETIRLLLKPGGKIILCTGE  125 (162)
T ss_pred             hhc-CCCceEEEECCCC--C-------------CHHHHHHHHHHHHHHhCccceEEEecHH
Confidence              2 4689999998887  2             3345556677777788999999987643

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK13699 putative methylase; Provisional

Probab=93.52  E-value=0.15  Score=42.26  Aligned_cols=66  Identities=21%  Similarity=0.350  Sum_probs=41.5

Q ss_pred             EEEEcccCCC--cCCCCceeEEEecceeeeeeeCC-CCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          110 KVLEADMLDL--PFSNDCFDVVIEKATMEVLFVNS-GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       110 ~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ++.++|..++  .++++++|+|+..+++..-+... +..+. .....+-....+.++.++|||||.+++.
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~-~~~~~ew~~~~l~E~~RVLKpgg~l~if   71 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIA-GDKTDEWLQPACNEMYRVLKKDALMVSF   71 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccc-cccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            5667777663  46789999999988874211110 00000 0011123467889999999999998864

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.51  E-value=0.11  Score=44.24  Aligned_cols=96  Identities=16%  Similarity=0.106  Sum_probs=59.6

Q ss_pred             CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-C-c-CCCCceeEEEe
Q 025039           57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-L-P-FSNDCFDVVIE  131 (259)
Q Consensus        57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~-~-~~~~~fD~V~~  131 (259)
                      .++.+||-+|+|+ |..+..+++. |..+++++|.+++.++.+++.    +.+.+ +...+..+ . . .....+|+|+.
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~-i~~~~~~~~~~~~~~~~g~d~vid  193 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GATAL-AEPEVLAERQGGLQNGRGVDVALE  193 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCcEe-cCchhhHHHHHHHhCCCCCCEEEE
Confidence            3678999999876 7777766665 553599999998888777653    32111 10011100 0 0 12235888874


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ...                     ....+..+.+.|+|+|.++++..
T Consensus       194 ~~G---------------------~~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       194 FSG---------------------ATAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             CCC---------------------ChHHHHHHHHHhcCCCEEEEecc
Confidence            211                     12467778889999999998764

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=93.50  E-value=0.43  Score=41.68  Aligned_cols=102  Identities=13%  Similarity=0.235  Sum_probs=66.3

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc----ccCC--CcCCCCce
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA----DMLD--LPFSNDCF  126 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~----d~~~--~~~~~~~f  126 (259)
                      .++++.+|.-+|||. |..++.-+.. |..+++++|+++..++.|++.    |.  ..++..    |+.+  ....++..
T Consensus       182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f----GA--T~~vn~~~~~~vv~~i~~~T~gG~  255 (366)
T COG1062         182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF----GA--THFVNPKEVDDVVEAIVELTDGGA  255 (366)
T ss_pred             cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc----CC--ceeecchhhhhHHHHHHHhcCCCC
Confidence            456889999999997 7777666655 555999999999999999875    22  233322    1211  01223356


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF  183 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  183 (259)
                      |.++-     ..                ...+.++.....+.++|..+++....+..
T Consensus       256 d~~~e-----~~----------------G~~~~~~~al~~~~~~G~~v~iGv~~~~~  291 (366)
T COG1062         256 DYAFE-----CV----------------GNVEVMRQALEATHRGGTSVIIGVAGAGQ  291 (366)
T ss_pred             CEEEE-----cc----------------CCHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            66542     11                11246777777788899999987765543

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=93.50  E-value=0.2  Score=43.92  Aligned_cols=71  Identities=20%  Similarity=0.284  Sum_probs=54.1

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEEecce
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKAT  134 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~  134 (259)
                      ..+++|+.||.|.+...+...|+.-+.++|+++.+++.-+.++..     ..++..|+....   +....+|+++...+
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGpP   76 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGPP   76 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCCC
Confidence            357999999999999999999987788999999999988887642     345566665533   11117899997654

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=93.38  E-value=0.13  Score=45.08  Aligned_cols=100  Identities=17%  Similarity=0.190  Sum_probs=59.3

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC--cCCCCcee-E
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL--PFSNDCFD-V  128 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~--~~~~~~fD-~  128 (259)
                      .+.++.+||-.|||. |..+..+++. |...+++++.+++..+.+++.    +... +.....+...+  ......+| +
T Consensus       157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~~~~~d~~  232 (347)
T PRK10309        157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GAMQTFNSREMSAPQIQSVLRELRFDQL  232 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCceEecCcccCHHHHHHHhcCCCCCeE
Confidence            345788999999876 6666666665 543478999999887776542    3211 11111110000  01223577 5


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |+..     .                .....+....+.|++||.++++...
T Consensus       233 v~d~-----~----------------G~~~~~~~~~~~l~~~G~iv~~G~~  262 (347)
T PRK10309        233 ILET-----A----------------GVPQTVELAIEIAGPRAQLALVGTL  262 (347)
T ss_pred             EEEC-----C----------------CCHHHHHHHHHHhhcCCEEEEEccC
Confidence            5531     1                1124677888999999999987643

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=93.30  E-value=0.42  Score=38.32  Aligned_cols=101  Identities=14%  Similarity=0.206  Sum_probs=67.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhc----CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-------CCCCc
Q 025039           58 PNSSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-------FSNDC  125 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~  125 (259)
                      ++..|+|+|.--|..+++.+..    |.. +|+++|++-..++.+...     .+++.+++++-.+..       .+.+.
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y  143 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEY  143 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence            5678999999999888877664    633 999999997665544332     368999999877632       12222


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      --+.+|   ++.-            ++.+..-.-++-..++|..|.++++.+-
T Consensus       144 ~kIfvi---lDsd------------Hs~~hvLAel~~~~pllsaG~Y~vVeDs  181 (237)
T COG3510         144 PKIFVI---LDSD------------HSMEHVLAELKLLAPLLSAGDYLVVEDS  181 (237)
T ss_pred             CcEEEE---ecCC------------chHHHHHHHHHHhhhHhhcCceEEEecc
Confidence            223233   2111            2345666777888889999999988653

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.17  E-value=0.21  Score=45.19  Aligned_cols=89  Identities=11%  Similarity=0.223  Sum_probs=58.1

Q ss_pred             CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .++.+|+-+|||. |.....+++. |. +|+.+|.++...+.|+..    |+   ...  +..+. .  ..+|+|+....
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~----G~---~~~--~~~e~-v--~~aDVVI~atG  266 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME----GY---EVM--TMEEA-V--KEGDIFVTTTG  266 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc----CC---EEc--cHHHH-H--cCCCEEEECCC
Confidence            4689999999998 7766655554 66 899999999877776542    32   221  11111 1  24798885311


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHH-HHhcccCCcEEEEEecC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEG-VHRVLKPDGLFISVSFG  179 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~  179 (259)
                                           ...++.. ..+.+++||+++.+...
T Consensus       267 ---------------------~~~~i~~~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         267 ---------------------NKDIITGEHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             ---------------------CHHHHHHHHHhcCCCCcEEEEeCCC
Confidence                                 1234444 48899999999887644

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=93.06  E-value=0.2  Score=43.68  Aligned_cols=98  Identities=20%  Similarity=0.181  Sum_probs=59.3

Q ss_pred             CCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-c-CCCCceeEEE
Q 025039           56 IKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-P-FSNDCFDVVI  130 (259)
Q Consensus        56 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~-~~~~~fD~V~  130 (259)
                      +.++.+||-.|+|. |..+..+++. |..++++++.+++..+.+++.    +.+. +.....+...+ . .....+|+|+
T Consensus       161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~d~vi  236 (339)
T cd08239         161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGADVAI  236 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCCCEEE
Confidence            45788999998875 6666666655 552499999999888777543    3211 11111110011 0 1223689988


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ....                     ....+....+.|+++|.++++..
T Consensus       237 d~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         237 ECSG---------------------NTAARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             ECCC---------------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence            4211                     12355677788999999998754

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02827 Alcohol dehydrogenase-like

Probab=92.94  E-value=0.2  Score=44.70  Aligned_cols=99  Identities=15%  Similarity=0.191  Sum_probs=59.7

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEE--cccCC-C-cCCCCcee
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLE--ADMLD-L-PFSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~--~d~~~-~-~~~~~~fD  127 (259)
                      .+.++.+||-.|+|. |..+..+++. |...++++|.++...+.+++.    |.+. +....  .++.+ + ....+.+|
T Consensus       190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga~~~i~~~~~~~~~~~~v~~~~~~g~d  265 (378)
T PLN02827        190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GVTDFINPNDLSEPIQQVIKRMTGGGAD  265 (378)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCcEEEcccccchHHHHHHHHHhCCCCC
Confidence            356789999999876 7777666665 553688999998877777542    3321 11111  01111 0 01123688


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  178 (259)
                      +|+....                     ....+....+.+++| |.++++..
T Consensus       266 ~vid~~G---------------------~~~~~~~~l~~l~~g~G~iv~~G~  296 (378)
T PLN02827        266 YSFECVG---------------------DTGIATTALQSCSDGWGLTVTLGV  296 (378)
T ss_pred             EEEECCC---------------------ChHHHHHHHHhhccCCCEEEEECC
Confidence            8874211                     113566778889998 99987654

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=92.91  E-value=0.82  Score=36.41  Aligned_cols=98  Identities=21%  Similarity=0.322  Sum_probs=63.1

Q ss_pred             cEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------C----------CCCeEEEEcccCCCcC
Q 025039           61 SVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G----------YKEVKVLEADMLDLPF  121 (259)
Q Consensus        61 ~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~v~~~~~d~~~~~~  121 (259)
                      +|.-+|+|+ | .++..++..|. +|+.+|.+++.++.+++++...       +          ..++++ ..|+.+.  
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~--   76 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA--   76 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG--
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH--
Confidence            467889988 5 45666677787 9999999999999988766541       1          112332 2333322  


Q ss_pred             CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       122 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                        ...|+|+-.-                ++..+..++++.++.+++.|+.+|...+.+.
T Consensus        77 --~~adlViEai----------------~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl  117 (180)
T PF02737_consen   77 --VDADLVIEAI----------------PEDLELKQELFAELDEICPPDTILASNTSSL  117 (180)
T ss_dssp             --CTESEEEE-S-----------------SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred             --hhhheehhhc----------------cccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence              2578877422                2566788899999999999999988766543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=92.81  E-value=0.45  Score=41.09  Aligned_cols=107  Identities=15%  Similarity=0.153  Sum_probs=71.9

Q ss_pred             CCCcEEEEcCCC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ++.+|.-+|.|. |..+..++--...+|+.+|+|...+.....-+.    .++.....+...+...-...|+++..-.+ 
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~----~rv~~~~st~~~iee~v~~aDlvIgaVLI-  241 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG----GRVHTLYSTPSNIEEAVKKADLVIGAVLI-  241 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC----ceeEEEEcCHHHHHHHhhhccEEEEEEEe-
Confidence            356888999997 887777766544499999999988888776653    24555555444433222468988753222 


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF  183 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  183 (259)
                                    .....+.-..++..+.||||++++=+...+...
T Consensus       242 --------------pgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc  274 (371)
T COG0686         242 --------------PGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGC  274 (371)
T ss_pred             --------------cCCCCceehhHHHHHhcCCCcEEEEEEEcCCCc
Confidence                          122344567788899999999999766655443

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=92.66  E-value=0.35  Score=42.54  Aligned_cols=47  Identities=17%  Similarity=0.216  Sum_probs=37.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcC---------CCeEEEeeCCHHHHHHHHHHHhhc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDG---------ITAITCIDLSAVAVEKMQERLLLK  104 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~~vD~s~~~~~~a~~~~~~~  104 (259)
                      .+..++|+|+|.|.++..+++..         ..++..+|+|++..+.=+++++..
T Consensus        77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            35689999999999988877642         228999999999988887777644

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=92.44  E-value=0.76  Score=36.14  Aligned_cols=114  Identities=19%  Similarity=0.130  Sum_probs=60.3

Q ss_pred             EcCCCCcchHHHHhcCC-C-eEEEeeCC--HHHHHHHH---HHHhhcCCCCeEEE-EcccCCCc----CCCCceeEEEec
Q 025039           65 LGCGNSRLSEGLYNDGI-T-AITCIDLS--AVAVEKMQ---ERLLLKGYKEVKVL-EADMLDLP----FSNDCFDVVIEK  132 (259)
Q Consensus        65 iGcG~G~~~~~l~~~~~-~-~v~~vD~s--~~~~~~a~---~~~~~~~~~~v~~~-~~d~~~~~----~~~~~fD~V~~~  132 (259)
                      +|=|.-.++..|++... . .+++.-+.  ++..+.-.   .++....-.++.+. ..|+.++.    .....||.|+-+
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN   82 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN   82 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence            55556566777777632 3 56555443  43333322   33333322234443 34666654    245789999966


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .+---.....+.  ..-..+..-+..++..+.++|+++|.+.+.-...
T Consensus        83 FPH~G~~~~~~~--~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~  128 (166)
T PF10354_consen   83 FPHVGGGSEDGK--RNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG  128 (166)
T ss_pred             CCCCCCCccchh--HHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            442110000000  0001133456778999999999999999875543

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.26  E-value=0.51  Score=39.14  Aligned_cols=95  Identities=28%  Similarity=0.331  Sum_probs=58.5

Q ss_pred             CCCCcEEEEcCCC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-----cCCCCceeEEE
Q 025039           57 KPNSSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V~  130 (259)
                      .++.+||..|+|. |..+..+++....++++++.++...+.+++.    +...  ++...-...     ......+|+++
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~~--~~~~~~~~~~~~~~~~~~~~~d~vi  206 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GADH--VIDYKEEDLEEELRLTGGGGADVVI  206 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCce--eccCCcCCHHHHHHHhcCCCCCEEE
Confidence            5788999999986 6666666654334899999998877776543    2111  111100000     11235689988


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ....-                     ...+..+.+.|+++|.++....
T Consensus       207 ~~~~~---------------------~~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         207 DAVGG---------------------PETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             ECCCC---------------------HHHHHHHHHhcccCCEEEEEcc
Confidence            53210                     1356777888999999997654

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK10458 DNA cytosine methylase; Provisional

Probab=92.23  E-value=0.45  Score=43.73  Aligned_cols=59  Identities=14%  Similarity=0.177  Sum_probs=44.1

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL  119 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  119 (259)
                      ..+++|+.||.|.+...+...|...+.++|+++.+.+.-+.++...  +....+.+|+.++
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~--p~~~~~~~DI~~i  146 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD--PATHRFNEDIRDI  146 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC--CccceeccChhhC
Confidence            4589999999999999999888867789999999888877775211  1233445555554

>PLN02740 Alcohol dehydrogenase-like

Probab=92.14  E-value=0.56  Score=41.85  Aligned_cols=99  Identities=18%  Similarity=0.245  Sum_probs=60.9

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEE--cccCC-C-cCCCCcee
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLE--ADMLD-L-PFSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~--~d~~~-~-~~~~~~fD  127 (259)
                      .+.++.+||-+|||. |..+..+++. |..+|+++|.+++.++.+++.    |.+. +....  .++.+ + ....+.+|
T Consensus       195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~~g~d  270 (381)
T PLN02740        195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GITDFINPKDSDKPVHERIREMTGGGVD  270 (381)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CCcEEEecccccchHHHHHHHHhCCCCC
Confidence            456789999999876 7777777765 443699999999888888652    3321 11111  01111 0 11122689


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  178 (259)
                      +|+....                     ....+......+++| |.++++..
T Consensus       271 vvid~~G---------------------~~~~~~~a~~~~~~g~G~~v~~G~  301 (381)
T PLN02740        271 YSFECAG---------------------NVEVLREAFLSTHDGWGLTVLLGI  301 (381)
T ss_pred             EEEECCC---------------------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence            8885321                     124566777788886 99887654

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=92.13  E-value=3.6  Score=30.16  Aligned_cols=85  Identities=13%  Similarity=0.215  Sum_probs=57.3

Q ss_pred             CcEEEEcCCC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC-CCceeEEEecceeee
Q 025039           60 SSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS-NDCFDVVIEKATMEV  137 (259)
Q Consensus        60 ~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l~~  137 (259)
                      ++|.|+|-|- =..+..|++.|. .++++|+++.       +..    ..+.+..-|+++.... =...|+|++..    
T Consensus        15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~----~g~~~v~DDitnP~~~iY~~A~lIYSiR----   78 (129)
T COG1255          15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP----EGLRFVVDDITNPNISIYEGADLIYSIR----   78 (129)
T ss_pred             CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc----ccceEEEccCCCccHHHhhCccceeecC----
Confidence            4999999997 457778888898 8999999986       111    2478888888874321 13578888732    


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                                    +..+++..+-.+.+.++  -.+++.
T Consensus        79 --------------pppEl~~~ildva~aVg--a~l~I~  101 (129)
T COG1255          79 --------------PPPELQSAILDVAKAVG--APLYIK  101 (129)
T ss_pred             --------------CCHHHHHHHHHHHHhhC--CCEEEE
Confidence                          33566666666666654  344444

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=92.02  E-value=0.76  Score=40.51  Aligned_cols=98  Identities=20%  Similarity=0.254  Sum_probs=61.0

Q ss_pred             cCCCCCcEEEEcC-C-CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEc-ccCC-C-cCCCCcee
Q 025039           55 HIKPNSSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEA-DMLD-L-PFSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~-d~~~-~-~~~~~~fD  127 (259)
                      .+.++.+||-.|+ | .|..+..+++. |. ++++++.+++..+.+++.+   |.+. +..... +..+ + ....+.+|
T Consensus       155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvD  230 (348)
T PLN03154        155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKL---GFDEAFNYKEEPDLDAALKRYFPEGID  230 (348)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhc---CCCEEEECCCcccHHHHHHHHCCCCcE
Confidence            3567899999998 4 37777777776 55 8999999988777765332   3222 111111 1111 0 01123689


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+...                    .  ...+....+.|+++|.++++..
T Consensus       231 ~v~d~v--------------------G--~~~~~~~~~~l~~~G~iv~~G~  259 (348)
T PLN03154        231 IYFDNV--------------------G--GDMLDAALLNMKIHGRIAVCGM  259 (348)
T ss_pred             EEEECC--------------------C--HHHHHHHHHHhccCCEEEEECc
Confidence            887421                    1  1366788899999999998754

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.84  E-value=0.81  Score=39.62  Aligned_cols=99  Identities=16%  Similarity=0.268  Sum_probs=61.7

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE-cccCC-C-----cCCCCc
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLD-L-----PFSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~-~-----~~~~~~  125 (259)
                      .+.++.+|.-+|+|. |.....-++. |..+++|+|++++-.+.|++.    |.  .+++. .|..+ +     ...++.
T Consensus       189 kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f----Ga--Te~iNp~d~~~~i~evi~EmTdgG  262 (375)
T KOG0022|consen  189 KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF----GA--TEFINPKDLKKPIQEVIIEMTDGG  262 (375)
T ss_pred             ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc----Cc--ceecChhhccccHHHHHHHHhcCC
Confidence            356788999999988 5544444444 666999999999999998875    32  22221 13322 0     123456


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEecCC
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSFGQ  180 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~  180 (259)
                      +|.-+-     ..                ...+++.++....+.| |.-+++...+
T Consensus       263 vDysfE-----c~----------------G~~~~m~~al~s~h~GwG~sv~iGv~~  297 (375)
T KOG0022|consen  263 VDYSFE-----CI----------------GNVSTMRAALESCHKGWGKSVVIGVAA  297 (375)
T ss_pred             ceEEEE-----ec----------------CCHHHHHHHHHHhhcCCCeEEEEEecC
Confidence            676551     11                1135666677777788 8888876544

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=91.83  E-value=3.1  Score=35.22  Aligned_cols=106  Identities=14%  Similarity=0.074  Sum_probs=67.9

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCC-HHHHHHHHHHHhhcCC---CCeEEEEcccCC-C-------cCCCCce
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLS-AVAVEKMQERLLLKGY---KEVKVLEADMLD-L-------PFSNDCF  126 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~---~~v~~~~~d~~~-~-------~~~~~~f  126 (259)
                      ...|+.+|||-=.-...+.. .. .+..+|++ |++++.-++.+...+.   .+.+++..|+.+ +       .+.....
T Consensus        82 ~~qvV~LGaGlDTr~~Rl~~-~~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p  159 (260)
T TIGR00027        82 IRQVVILGAGLDTRAYRLPW-PD-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP  159 (260)
T ss_pred             CcEEEEeCCccccHHHhcCC-CC-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence            35799999997555544422 22 34444444 5566666666664332   346777778752 1       0112234


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      -++++-+++.++             +.+...++++.+.+...||+.+++-..+
T Consensus       160 tl~i~EGvl~YL-------------~~~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       160 TAWLWEGLLMYL-------------TEEAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             eeeeecchhhcC-------------CHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            467778888777             5678889999999998899988875443

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=91.73  E-value=0.68  Score=41.78  Aligned_cols=45  Identities=20%  Similarity=0.299  Sum_probs=35.1

Q ss_pred             CCCCCcEEEEc-CCC-CcchHHHHhc---CCCeEEEeeCCHHHHHHHHHH
Q 025039           56 IKPNSSVLELG-CGN-SRLSEGLYND---GITAITCIDLSAVAVEKMQER  100 (259)
Q Consensus        56 ~~~~~~vLDiG-cG~-G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~  100 (259)
                      +.++.+||-+| +|. |..+..+++.   |..+++++|.++..++.+++.
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~  222 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL  222 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence            45678999997 465 8888877776   333799999999999988875

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=91.46  E-value=0.42  Score=42.34  Aligned_cols=96  Identities=18%  Similarity=0.270  Sum_probs=55.2

Q ss_pred             CCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE-cccCCCcCCCCceeEEEec
Q 025039           56 IKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        56 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~V~~~  132 (259)
                      +.++.+||-.|+|. |..+..+++. |. ++++++.++.....+.+   ..|.+  .++. .+...+....+.+|+|+..
T Consensus       181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~---~~Ga~--~vi~~~~~~~~~~~~~~~D~vid~  254 (360)
T PLN02586        181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAIN---RLGAD--SFLVSTDPEKMKAAIGTMDYIIDT  254 (360)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHH---hCCCc--EEEcCCCHHHHHhhcCCCCEEEEC
Confidence            35688999999987 7777777765 54 78888877654332222   22321  1111 1100111001247888742


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ..                     ....+....+.|++||.++.+..
T Consensus       255 ~g---------------------~~~~~~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        255 VS---------------------AVHALGPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             CC---------------------CHHHHHHHHHHhcCCcEEEEeCC
Confidence            11                     12356778889999999998754

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=91.39  E-value=0.5  Score=41.55  Aligned_cols=44  Identities=23%  Similarity=0.357  Sum_probs=34.7

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHH
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQE   99 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~   99 (259)
                      .+.++.+||-.|||. |..+..+++. |. +++++|.+++.++.+++
T Consensus       163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~  208 (349)
T TIGR03201       163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG  208 (349)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence            356789999999976 7777767665 55 89999999988887754

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=91.28  E-value=0.47  Score=42.47  Aligned_cols=64  Identities=13%  Similarity=0.222  Sum_probs=51.3

Q ss_pred             CCCeEEEEcccCCCc--CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          106 YKEVKVLEADMLDLP--FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       106 ~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      .+++++.++++.+.-  .+++++|.++.....+.+             +.+...+.++++.+.++|||++++-+...+.
T Consensus       274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm-------------~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~  339 (380)
T PF11899_consen  274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWM-------------DPEQLNEEWQELARTARPGARVLWRSAAVPP  339 (380)
T ss_pred             CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhC-------------CHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence            357899988887632  457899999987777766             5588899999999999999999997766544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=91.17  E-value=1  Score=39.45  Aligned_cols=99  Identities=22%  Similarity=0.296  Sum_probs=60.3

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcccCC-C-c-CCCCceeE
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L-P-FSNDCFDV  128 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~-~-~~~~~fD~  128 (259)
                      .++++.+||-.|+|. |..+..+++. |...++++|.+++..+.+++.    +.+.+ .....+..+ + . .....+|+
T Consensus       163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~i~~~~~~~~~d~  238 (351)
T cd08285         163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----GATDIVDYKNGDVVEQILKLTGGKGVDA  238 (351)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence            356788999998875 6666666665 443699999998877777642    32111 111111100 0 1 12346898


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |+....                     ....+..+.++|+++|.++.+..
T Consensus       239 vld~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~  267 (351)
T cd08285         239 VIIAGG---------------------GQDTFEQALKVLKPGGTISNVNY  267 (351)
T ss_pred             EEECCC---------------------CHHHHHHHHHHhhcCCEEEEecc
Confidence            884211                     02467788889999999987643

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.15  E-value=3  Score=30.06  Aligned_cols=89  Identities=21%  Similarity=0.229  Sum_probs=54.4

Q ss_pred             CCCCcchHHHHhc---CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEecceeeeee
Q 025039           67 CGNSRLSEGLYND---GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEKATMEVLF  139 (259)
Q Consensus        67 cG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~~~l~~~~  139 (259)
                      ||.|..+..+++.   +..+++.+|.+++.++.+++.       .+.++.+|..+..    ..-...+.+++...     
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------GVEVIYGDATDPEVLERAGIEKADAVVILTD-----   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------TSEEEES-TTSHHHHHHTTGGCESEEEEESS-----
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------ccccccccchhhhHHhhcCccccCEEEEccC-----
Confidence            4445555555443   222899999999998888764       3678899988732    23356887775321     


Q ss_pred             eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          140 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                                   .......+....+.+.|...++......
T Consensus        72 -------------~d~~n~~~~~~~r~~~~~~~ii~~~~~~   99 (116)
T PF02254_consen   72 -------------DDEENLLIALLARELNPDIRIIARVNDP   99 (116)
T ss_dssp             -------------SHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred             -------------CHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence                         1233344455556777888887765443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=91.02  E-value=1  Score=38.56  Aligned_cols=90  Identities=23%  Similarity=0.193  Sum_probs=60.0

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE-cccCCCcCCCCceeEEEeccee
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .+|+-+|.|-  |.++..+.+.|.. .+++.|.+...++.+.+.    +   +.... .+...  ......|+|+..-++
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----g---v~d~~~~~~~~--~~~~~aD~VivavPi   74 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----G---VIDELTVAGLA--EAAAEADLVIVAVPI   74 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----C---cccccccchhh--hhcccCCEEEEeccH
Confidence            4688888886  6777788888886 689999998877776643    2   21111 11111  123457998864433


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                                        ....++++++...|++|..+.=+
T Consensus        75 ------------------~~~~~~l~~l~~~l~~g~iv~Dv   97 (279)
T COG0287          75 ------------------EATEEVLKELAPHLKKGAIVTDV   97 (279)
T ss_pred             ------------------HHHHHHHHHhcccCCCCCEEEec
Confidence                              56678899999899888877633

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=90.99  E-value=2.3  Score=36.87  Aligned_cols=100  Identities=13%  Similarity=0.117  Sum_probs=60.1

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHH--HhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQER--LLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .+|+-+|||.  |.++..|++.|. .|+.++-+++.++..++.  +................. +...+.+|+|+..-  
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~v--   78 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLAC--   78 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCC-cccccccCEEEEEC--
Confidence            4799999997  567777887777 899999887666666542  111000010010100001 11224689887421  


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                                      ...+..++++.+...+.++..++..-.+
T Consensus        79 ----------------K~~~~~~al~~l~~~l~~~t~vv~lQNG  106 (305)
T PRK05708         79 ----------------KAYDAEPAVASLAHRLAPGAELLLLQNG  106 (305)
T ss_pred             ----------------CHHhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence                            2235668889999999999988876444

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=90.92  E-value=0.83  Score=40.53  Aligned_cols=99  Identities=13%  Similarity=0.163  Sum_probs=60.8

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEE--cccCC-C-cCCCCcee
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLE--ADMLD-L-PFSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~--~d~~~-~-~~~~~~fD  127 (259)
                      .+.++.+||-.|||. |..+..+++. |..+|+++|.+++.++.+++.    +.+. +....  .++.+ + ....+.+|
T Consensus       182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~~g~d  257 (368)
T TIGR02818       182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNPNDYDKPIQEVIVEITDGGVD  257 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcccccchhHHHHHHHHhCCCCC
Confidence            456789999999876 7777777766 443799999999988888653    3211 11110  01101 0 01123588


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  178 (259)
                      +|+....                     ....+....+.++++ |.++++..
T Consensus       258 ~vid~~G---------------------~~~~~~~~~~~~~~~~G~~v~~g~  288 (368)
T TIGR02818       258 YSFECIG---------------------NVNVMRAALECCHKGWGESIIIGV  288 (368)
T ss_pred             EEEECCC---------------------CHHHHHHHHHHhhcCCCeEEEEec
Confidence            8874211                     124567777888886 99988764

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=90.76  E-value=1.3  Score=38.53  Aligned_cols=94  Identities=24%  Similarity=0.356  Sum_probs=57.6

Q ss_pred             CCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc---ccCCCcCCCCceeEEEec
Q 025039           58 PNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        58 ~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~~~~~~~fD~V~~~  132 (259)
                      ++.+||..|||. |..+..+++. |..++++++.++...+.+++.    +.+.  ++..   +..........+|+++..
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~~--vi~~~~~~~~~~~~~~~~vd~vld~  238 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GADE--TVNLARDPLAAYAADKGDFDVVFEA  238 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCCE--EEcCCchhhhhhhccCCCccEEEEC
Confidence            678899988875 6666666665 543789999988877755442    2211  1111   111111122358998853


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ...                     ...++.+.+.|+++|.++.+..
T Consensus       239 ~g~---------------------~~~~~~~~~~L~~~G~~v~~g~  263 (339)
T cd08232         239 SGA---------------------PAALASALRVVRPGGTVVQVGM  263 (339)
T ss_pred             CCC---------------------HHHHHHHHHHHhcCCEEEEEec
Confidence            210                     1356778899999999997653

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=90.72  E-value=0.74  Score=39.42  Aligned_cols=57  Identities=21%  Similarity=0.163  Sum_probs=48.4

Q ss_pred             HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc
Q 025039           47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK  104 (259)
Q Consensus        47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~  104 (259)
                      .+.+.+.....++..|||.-+|+|..+......+- .++|+|+++.-++.+.+++...
T Consensus       211 l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         211 LIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             HHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence            34455555667899999999999999999888887 8999999999999999988643

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=90.63  E-value=1.2  Score=39.98  Aligned_cols=112  Identities=14%  Similarity=0.182  Sum_probs=63.3

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc---ccCC-Cc--CCCCce
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DMLD-LP--FSNDCF  126 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~-~~--~~~~~f  126 (259)
                      .+.++.+||-.|+|. |..+..+++. |...++.+|.++..++.+++.    |..  .+...   +..+ +.  .....+
T Consensus       182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~--~v~~~~~~~~~~~v~~~~~~~g~  255 (393)
T TIGR02819       182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE--TVDLSKDATLPEQIEQILGEPEV  255 (393)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe--EEecCCcccHHHHHHHHcCCCCC
Confidence            356788888888876 7777666665 553566778888888887763    331  12111   1111 10  122358


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |+++........    +.++.   ....+....++...+++++||.++++...
T Consensus       256 Dvvid~~G~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       256 DCAVDCVGFEAR----GHGHD---GKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             cEEEECCCCccc----ccccc---ccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence            988853211000    00000   00112235788888999999999997654

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.59  E-value=1.2  Score=38.15  Aligned_cols=95  Identities=17%  Similarity=0.213  Sum_probs=58.1

Q ss_pred             cEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc---C-----C---------CCeEEEEcccCCCcC
Q 025039           61 SVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK---G-----Y---------KEVKVLEADMLDLPF  121 (259)
Q Consensus        61 ~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~-----~---------~~v~~~~~d~~~~~~  121 (259)
                      +|.-+|+|.  +.++..+++.|. +|+.+|.+++.++.+.++....   +     +         .++++ ..+..+   
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~---   77 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA---   77 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH---
Confidence            588899986  346666777787 8999999999999887643211   0     0         01111 112211   


Q ss_pred             CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       122 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      .-...|+|+..-+                +.......++.++.+.++|+.++...
T Consensus        78 ~~~~aD~Vi~avp----------------e~~~~k~~~~~~l~~~~~~~~il~~~  116 (288)
T PRK09260         78 AVADADLVIEAVP----------------EKLELKKAVFETADAHAPAECYIATN  116 (288)
T ss_pred             hhcCCCEEEEecc----------------CCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence            1134688874321                23344567788888889888766543

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.49  E-value=1.7  Score=37.26  Aligned_cols=98  Identities=17%  Similarity=0.253  Sum_probs=63.0

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------CC----------CCeEEEEcccCCCc
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------GY----------KEVKVLEADMLDLP  120 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~----------~~v~~~~~d~~~~~  120 (259)
                      .+|--+|+|+  +.++..++..|. +|+..|.+++.++.+++++...       +.          .++++ ..|...  
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--   81 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGD--   81 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHH--
Confidence            4788999997  456667777888 8999999999999877654321       11          01111 122211  


Q ss_pred             CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcc-cCCcEEEEEecC
Q 025039          121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVL-KPDGLFISVSFG  179 (259)
Q Consensus       121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~  179 (259)
                        -...|+|+-.-                +++.+....++..+.+.+ +|+.++...+.+
T Consensus        82 --~~~~d~ViEav----------------~E~~~~K~~l~~~l~~~~~~~~~il~snTS~  123 (286)
T PRK07819         82 --FADRQLVIEAV----------------VEDEAVKTEIFAELDKVVTDPDAVLASNTSS  123 (286)
T ss_pred             --hCCCCEEEEec----------------ccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence              13468877431                145566778888888888 778777655444

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=90.30  E-value=1.7  Score=37.60  Aligned_cols=97  Identities=14%  Similarity=0.134  Sum_probs=59.7

Q ss_pred             cCCCCCcEEEEcC-C-CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEc-ccCC-C-cCCCCcee
Q 025039           55 HIKPNSSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEA-DMLD-L-PFSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~-~-~~~~~~fD  127 (259)
                      .+.++.+||-.|+ | .|..+..+++. |. ++++++.+++..+.+++    .|.+.+ ..... +..+ . ....+.+|
T Consensus       135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~gvd  209 (325)
T TIGR02825       135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPDGYD  209 (325)
T ss_pred             CCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCCCeE
Confidence            3567889999985 3 37777777776 55 89999999887777754    243221 11111 1111 0 11224689


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+...                    .  ...+..+.+.|+++|.++.+..
T Consensus       210 vv~d~~--------------------G--~~~~~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       210 CYFDNV--------------------G--GEFSNTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             EEEECC--------------------C--HHHHHHHHHHhCcCcEEEEecc
Confidence            888421                    1  1245778899999999997643

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=89.97  E-value=1.1  Score=39.75  Aligned_cols=99  Identities=17%  Similarity=0.220  Sum_probs=59.3

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEc--ccCC-C-cCCCCcee
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEA--DMLD-L-PFSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~--d~~~-~-~~~~~~fD  127 (259)
                      .+.++.+||-.|+|. |..+..+++. |..+|++++.++...+.+++.    +.+.+ .....  ++.+ + ......+|
T Consensus       181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~g~d  256 (365)
T cd08277         181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GATDFINPKDSDKPVSEVIREMTGGGVD  256 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCcEeccccccchHHHHHHHHhCCCCC
Confidence            356789999998865 6666666665 443799999998888877542    32221 11110  0000 0 01124689


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  178 (259)
                      +|+....                     ....+..+.+.|+++ |.++.+..
T Consensus       257 ~vid~~g---------------------~~~~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         257 YSFECTG---------------------NADLMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             EEEECCC---------------------ChHHHHHHHHhcccCCCEEEEEcC
Confidence            8884211                     024667788889885 99988754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=89.85  E-value=0.79  Score=40.63  Aligned_cols=100  Identities=16%  Similarity=0.218  Sum_probs=60.8

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEc--ccCC-C-cCCCCcee
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEA--DMLD-L-PFSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~--d~~~-~-~~~~~~fD  127 (259)
                      .++++.+||-.|+|. |..+..+++. |..+++++|.+++.++.+++.    +.+. +.....  ++.+ + ....+.+|
T Consensus       183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----Ga~~~i~~~~~~~~~~~~v~~~~~~g~d  258 (368)
T cd08300         183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----GATDCVNPKDHDKPIQQVLVEMTDGGVD  258 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCEEEcccccchHHHHHHHHHhCCCCc
Confidence            356789999999876 6676666665 443699999999888877542    3221 111111  1111 0 01123689


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEecC
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSFG  179 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  179 (259)
                      +|+....                     ....+..+.+.++++ |.++.+...
T Consensus       259 ~vid~~g---------------------~~~~~~~a~~~l~~~~G~~v~~g~~  290 (368)
T cd08300         259 YTFECIG---------------------NVKVMRAALEACHKGWGTSVIIGVA  290 (368)
T ss_pred             EEEECCC---------------------ChHHHHHHHHhhccCCCeEEEEccC
Confidence            8885211                     024667778889887 999887543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=89.78  E-value=2.2  Score=38.89  Aligned_cols=112  Identities=14%  Similarity=0.150  Sum_probs=67.1

Q ss_pred             CCCcEEEEcCCCCcch--HHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhc-CCCCeEEEEcccCC--CcC-CCCceeEEE
Q 025039           58 PNSSVLELGCGNSRLS--EGLYNDGIT-AITCIDLSAVAVEKMQERLLLK-GYKEVKVLEADMLD--LPF-SNDCFDVVI  130 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~--~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~~--~~~-~~~~fD~V~  130 (259)
                      .+..++|+|.|.|.-.  ...+..+-. .++.||.+..|.......+..- ....+.+....+..  ++. ....||+|+
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi  279 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI  279 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence            4567889998876543  333333423 7999999999999888776540 00011111101111  232 234699999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHH-HhcccCCcEEEEEecCCc
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGV-HRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~LkpgG~l~~~~~~~~  181 (259)
                      +...++.+.            .........++. .+..++|+.+++++.+.+
T Consensus       280 ~ah~l~~~~------------s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~  319 (491)
T KOG2539|consen  280 CAHKLHELG------------SKFSRLDVPESLWRKTDRSGYFLVIIEKGTT  319 (491)
T ss_pred             eeeeeeccC------------CchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence            988887662            222334444444 456788999999876654

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.74  E-value=2.5  Score=36.22  Aligned_cols=95  Identities=23%  Similarity=0.278  Sum_probs=58.4

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc--------CC----------CCeEEEEcccCCC
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK--------GY----------KEVKVLEADMLDL  119 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~----------~~v~~~~~d~~~~  119 (259)
                      .+|.-+|+|.  +.++..++..|. +|+.+|.+++.++.+++++...        .+          .++++ ..|..+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a   81 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA   81 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH
Confidence            4688899997  345556666777 8999999999988887653211        00          11221 1222211


Q ss_pred             cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          120 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       120 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                         -...|+|+..-+                +..+....+++++...++++.++..
T Consensus        82 ---~~~aDlVieavp----------------e~~~~k~~~~~~l~~~~~~~~ii~s  118 (287)
T PRK08293         82 ---VKDADLVIEAVP----------------EDPEIKGDFYEELAKVAPEKTIFAT  118 (287)
T ss_pred             ---hcCCCEEEEecc----------------CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence               134688875321                2334567888889888887776544

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=89.59  E-value=1.5  Score=36.90  Aligned_cols=96  Identities=23%  Similarity=0.245  Sum_probs=58.2

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      .+.++.+||-.|||. |..+..+++. |..++++++.+++..+.+++.    +..+ .+...  .........+|+|+..
T Consensus        94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~-~~~~~--~~~~~~~~~~d~vl~~  166 (277)
T cd08255          94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPAD-PVAAD--TADEIGGRGADVVIEA  166 (277)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCc-ccccc--chhhhcCCCCCEEEEc
Confidence            456788999998876 6666666665 542399999998887766653    2001 11110  0001123468988852


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ...                     ...+....+.|+++|.++.+..
T Consensus       167 ~~~---------------------~~~~~~~~~~l~~~g~~~~~g~  191 (277)
T cd08255         167 SGS---------------------PSALETALRLLRDRGRVVLVGW  191 (277)
T ss_pred             cCC---------------------hHHHHHHHHHhcCCcEEEEEec
Confidence            110                     1356778889999999987643

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.57  E-value=1.8  Score=37.84  Aligned_cols=96  Identities=20%  Similarity=0.296  Sum_probs=60.8

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh-------cCCC------CeEEEEcccCCCcCCCC
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-------KGYK------EVKVLEADMLDLPFSND  124 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~------~v~~~~~d~~~~~~~~~  124 (259)
                      .+|--+|+|+  ..++..++..|. +|+..|.+++.++.++..+..       .+..      ++++. .++.+   .-.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~---av~   82 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA---CVA   82 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---Hhc
Confidence            5799999996  456666777888 999999999988876654321       1110      11111 11111   113


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ..|+|+-.-                |+..+-...++.++.+.++|+.++...
T Consensus        83 ~aDlViEav----------------pE~l~vK~~lf~~l~~~~~~~aIlaSn  118 (321)
T PRK07066         83 DADFIQESA----------------PEREALKLELHERISRAAKPDAIIASS  118 (321)
T ss_pred             CCCEEEECC----------------cCCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence            468877532                145567788999999999998854443

>PRK10083 putative oxidoreductase; Provisional

Probab=89.57  E-value=0.99  Score=39.24  Aligned_cols=100  Identities=15%  Similarity=0.133  Sum_probs=59.1

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHh-c-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcccCC-CcCCCCceeEE
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYN-D-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-LPFSNDCFDVV  129 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~-~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~~~~~~~fD~V  129 (259)
                      .+.++.+||-.|+|. |..+..+++ . |...+++++.+++..+.+++.    |.+.+ .....++.+ +.-....+|+|
T Consensus       157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~~~d~v  232 (339)
T PRK10083        157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEEKGIKPTLI  232 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhcCCCCCCEE
Confidence            355788999999775 666666776 3 764688899988887777653    32111 111111111 11011234566


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +....                     ....+....+.|+++|.++.+...
T Consensus       233 id~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~~  261 (339)
T PRK10083        233 IDAAC---------------------HPSILEEAVTLASPAARIVLMGFS  261 (339)
T ss_pred             EECCC---------------------CHHHHHHHHHHhhcCCEEEEEccC
Confidence            64210                     023577788899999999987543

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=89.37  E-value=0.85  Score=39.47  Aligned_cols=74  Identities=12%  Similarity=0.163  Sum_probs=48.6

Q ss_pred             EEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC------C-cCCCCceeEEEecc
Q 025039           63 LELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD------L-PFSNDCFDVVIEKA  133 (259)
Q Consensus        63 LDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~------~-~~~~~~fD~V~~~~  133 (259)
                      +|||.|..-+--.+...-.+ ...++|++...++.|.+++..++... +.+++....+      . ..++..||++.|++
T Consensus       107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNP  186 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNP  186 (419)
T ss_pred             eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCC
Confidence            68877764333333222222 78999999999999999999888754 5555443222      0 12245699999998


Q ss_pred             eee
Q 025039          134 TME  136 (259)
Q Consensus       134 ~l~  136 (259)
                      +|.
T Consensus       187 PFf  189 (419)
T KOG2912|consen  187 PFF  189 (419)
T ss_pred             chh
Confidence            874

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.32  E-value=4.2  Score=34.84  Aligned_cols=96  Identities=24%  Similarity=0.263  Sum_probs=59.9

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------CC----------CCeEEEEcccCCCc
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------GY----------KEVKVLEADMLDLP  120 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~----------~~v~~~~~d~~~~~  120 (259)
                      .+|.-+|+|.  +.++..++..|. +|+..|.+++.++.+.+.+...       +.          .++++ ..+...  
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--   80 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED--   80 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH--
Confidence            4688899997  356667777787 8999999999988765433211       10          11222 122211  


Q ss_pred             CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                        -...|+|+..-+                +.......+++.+...++|+.+++..+
T Consensus        81 --~~~aD~Vieavp----------------e~~~~k~~~~~~l~~~~~~~~ii~s~t  119 (292)
T PRK07530         81 --LADCDLVIEAAT----------------EDETVKRKIFAQLCPVLKPEAILATNT  119 (292)
T ss_pred             --hcCCCEEEEcCc----------------CCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence              135788875321                233445678888999999988776433

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=89.06  E-value=1.2  Score=39.23  Aligned_cols=96  Identities=23%  Similarity=0.295  Sum_probs=55.4

Q ss_pred             CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .++.+||-.|+|. |..+..+++. |. ++++++.+++..+.+.+.   .|.+. .+...+...+......+|+|+....
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~---~Ga~~-~i~~~~~~~~~~~~~~~D~vid~~g  253 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEH---LGADD-YLVSSDAAEMQEAADSLDYIIDTVP  253 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh---cCCcE-EecCCChHHHHHhcCCCcEEEECCC
Confidence            4678899888876 7777767665 54 788888887655554433   23311 1111111111101124788774211


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                                           ....+..+.+.|+++|.++.+..
T Consensus       254 ---------------------~~~~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        254 ---------------------VFHPLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             ---------------------chHHHHHHHHHhccCCEEEEECC
Confidence                                 01356677789999999998754

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=88.92  E-value=2.1  Score=36.51  Aligned_cols=85  Identities=20%  Similarity=0.236  Sum_probs=53.7

Q ss_pred             cEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeee
Q 025039           61 SVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL  138 (259)
Q Consensus        61 ~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~  138 (259)
                      +|.-+|+|.  |.++..+.+.|. +|+++|.+++.++.+.+.    +.  +.....+. + .  -...|+|+..-+    
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g~--~~~~~~~~-~-~--~~~aDlVilavp----   66 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----GL--VDEASTDL-S-L--LKDCDLVILALP----   66 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----CC--cccccCCH-h-H--hcCCCEEEEcCC----
Confidence            477789887  557777777777 899999999888777653    21  11111111 1 1  135788885432    


Q ss_pred             eeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          139 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                                    .....++++++...++++.++.
T Consensus        67 --------------~~~~~~~~~~l~~~l~~~~ii~   88 (279)
T PRK07417         67 --------------IGLLLPPSEQLIPALPPEAIVT   88 (279)
T ss_pred             --------------HHHHHHHHHHHHHhCCCCcEEE
Confidence                          2345567888888888775443

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.86  E-value=3.6  Score=35.08  Aligned_cols=96  Identities=21%  Similarity=0.326  Sum_probs=60.4

Q ss_pred             cEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHH-------hhcCC-C---------CeEEEEcccCCCcC
Q 025039           61 SVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERL-------LLKGY-K---------EVKVLEADMLDLPF  121 (259)
Q Consensus        61 ~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~-~---------~v~~~~~d~~~~~~  121 (259)
                      +|.-+|+|.  +.++..++..|. +|+++|.+++.++.+++++       ...+. .         ++++ ..|...   
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~---   79 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD---   79 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence            588899996  567777777887 8999999999987665322       22220 0         1121 122211   


Q ss_pred             CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       122 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                       -...|+|+..-.                +......+++.++.+.++|+..+...+.
T Consensus        80 -~~~aDlVi~av~----------------e~~~~k~~~~~~l~~~~~~~~il~s~ts  119 (282)
T PRK05808         80 -LKDADLVIEAAT----------------ENMDLKKKIFAQLDEIAKPEAILATNTS  119 (282)
T ss_pred             -hccCCeeeeccc----------------ccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence             235788874221                2334556899999999999887754333

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=88.83  E-value=7  Score=35.05  Aligned_cols=114  Identities=24%  Similarity=0.237  Sum_probs=72.2

Q ss_pred             cccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccC
Q 025039           40 EWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADML  117 (259)
Q Consensus        40 ~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~  117 (259)
                      .|-...+.+.+.+...... ..||-++=.-|.++..++..++ . ...| |--.-...++++..++++.  +++.  +..
T Consensus        27 awdaade~ll~~~~~~~~~-~~~~i~nd~fGal~~~l~~~~~-~-~~~d-s~~~~~~~~~n~~~n~~~~~~~~~~--~~~  100 (378)
T PRK15001         27 AWEAADEYLLQQLDDTEIR-GPVLILNDAFGALSCALAEHKP-Y-SIGD-SYISELATRENLRLNGIDESSVKFL--DST  100 (378)
T ss_pred             ccccHHHHHHHHHhhcccC-CCEEEEcCchhHHHHHHHhCCC-C-eeeh-HHHHHHHHHHHHHHcCCCcccceee--ccc
Confidence            3555555555555442222 3899999999999999996655 2 2234 2333445567788777653  3333  222


Q ss_pred             CCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          118 DLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       118 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      + +++ +.+|+|+..-                |.........+..+.++|.||+.+++..
T Consensus       101 ~-~~~-~~~d~vl~~~----------------PK~~~~l~~~l~~l~~~l~~~~~ii~g~  142 (378)
T PRK15001        101 A-DYP-QQPGVVLIKV----------------PKTLALLEQQLRALRKVVTSDTRIIAGA  142 (378)
T ss_pred             c-ccc-CCCCEEEEEe----------------CCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence            2 223 4589988532                1355677889999999999999987654

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=88.81  E-value=2.1  Score=37.03  Aligned_cols=98  Identities=26%  Similarity=0.284  Sum_probs=59.5

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC----cCCCCceeE
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDV  128 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~  128 (259)
                      .+.++.+||..|+|. |..+..+++. |...+++++.+++..+.+++.    +.+  .++..+-...    ......+|+
T Consensus       156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~~~~~~~vd~  229 (334)
T cd08234         156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT--ETVDPSREDPEAQKEDNPYGFDV  229 (334)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe--EEecCCCCCHHHHHHhcCCCCcE
Confidence            345788999998764 6666666665 442488999998887777442    221  2222111110    112356899


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++....                     ....+..+.+.|+++|.++.+...
T Consensus       230 v~~~~~---------------------~~~~~~~~~~~l~~~G~~v~~g~~  259 (334)
T cd08234         230 VIEATG---------------------VPKTLEQAIEYARRGGTVLVFGVY  259 (334)
T ss_pred             EEECCC---------------------ChHHHHHHHHHHhcCCEEEEEecC
Confidence            885311                     024677778889999999876543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=88.81  E-value=1.6  Score=36.89  Aligned_cols=72  Identities=13%  Similarity=0.206  Sum_probs=52.0

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .+.++....|+|+-+|..+-.|.+++- .|+++|--+ |.+..    -..  ..|+....|.++........|-.+|..+
T Consensus       208 rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~-ma~sL----~dt--g~v~h~r~DGfk~~P~r~~idWmVCDmV  279 (358)
T COG2933         208 RLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGP-MAQSL----MDT--GQVTHLREDGFKFRPTRSNIDWMVCDMV  279 (358)
T ss_pred             hhcCCceeeecccCCCccchhhhhcce-EEEEeccch-hhhhh----hcc--cceeeeeccCcccccCCCCCceEEeehh
Confidence            356789999999999999999999988 999999544 32222    211  2477777788776544567888777543

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=88.76  E-value=1.8  Score=37.26  Aligned_cols=96  Identities=17%  Similarity=0.151  Sum_probs=59.1

Q ss_pred             cCCCCCcEEEEcC-C-CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcccCC-C-cCCCCceeE
Q 025039           55 HIKPNSSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L-PFSNDCFDV  128 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~-~~~~~~fD~  128 (259)
                      .+.++.+||-.|+ | .|..+..+++. |. ++++++.+++..+.+++.    |...+ .....++.+ + ......+|+
T Consensus       140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~~----Ga~~vi~~~~~~~~~~v~~~~~~gvd~  214 (329)
T cd08294         140 KPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKEL----GFDAVFNYKTVSLEEALKEAAPDGIDC  214 (329)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCCEEEeCCCccHHHHHHHHCCCCcEE
Confidence            3567889999885 3 37777777765 55 899999888877777652    33221 111111111 0 111246898


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      |+...                    .  ...+....+.|+++|.++.+.
T Consensus       215 vld~~--------------------g--~~~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         215 YFDNV--------------------G--GEFSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             EEECC--------------------C--HHHHHHHHHhhccCCEEEEEc
Confidence            87421                    1  145678889999999998764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=88.65  E-value=2.8  Score=35.91  Aligned_cols=94  Identities=15%  Similarity=0.265  Sum_probs=58.4

Q ss_pred             CcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc----------CC----------CCeEEEEcccC
Q 025039           60 SSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK----------GY----------KEVKVLEADML  117 (259)
Q Consensus        60 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~----------~~v~~~~~d~~  117 (259)
                      .+|.-+|+|. | .++..++..|. +|+.+|.+++.++.+++++...          +.          .++.+ ..|. 
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~-   80 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY-   80 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH-
Confidence            4688999997 4 46667777787 8999999999998776543321          10          00111 1111 


Q ss_pred             CCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          118 DLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       118 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                      + .  -...|+|+..-+                +.......+++++.+.++|+.+++-
T Consensus        81 ~-~--~~~aDlVieav~----------------e~~~~k~~~~~~l~~~~~~~~il~S  119 (291)
T PRK06035         81 E-S--LSDADFIVEAVP----------------EKLDLKRKVFAELERNVSPETIIAS  119 (291)
T ss_pred             H-H--hCCCCEEEEcCc----------------CcHHHHHHHHHHHHhhCCCCeEEEE
Confidence            1 1  134688775321                2334567888889888888876653

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=88.51  E-value=0.99  Score=40.14  Aligned_cols=105  Identities=11%  Similarity=0.065  Sum_probs=69.4

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHH-------hhcCC--CCeEEEEcccCCCc---CC
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERL-------LLKGY--KEVKVLEADMLDLP---FS  122 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~-------~~~~~--~~v~~~~~d~~~~~---~~  122 (259)
                      +.+++...|+|+|-|.+...++..+.. .-+|+++.+..-+.+..+.       +..|-  ..+..+++++....   .-
T Consensus       190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI  269 (419)
T KOG3924|consen  190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI  269 (419)
T ss_pred             cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence            567899999999999999988877554 7888888766555554322       11222  23677777776522   11


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ....++|+++.+..               + +++.-=+.++..-+++|.+++-.
T Consensus       270 ~~eatvi~vNN~~F---------------d-p~L~lr~~eil~~ck~gtrIiS~  307 (419)
T KOG3924|consen  270 QTEATVIFVNNVAF---------------D-PELKLRSKEILQKCKDGTRIISS  307 (419)
T ss_pred             hhcceEEEEecccC---------------C-HHHHHhhHHHHhhCCCcceEecc
Confidence            24578888876541               2 23333344888999999999854

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=88.38  E-value=0.74  Score=40.78  Aligned_cols=42  Identities=26%  Similarity=0.241  Sum_probs=33.6

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHH
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQE   99 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~   99 (259)
                      +-..|+|+|+|.|.++..+.-...-.|.+||-|+...+.|++
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            447899999999999998864422299999999887777764

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.34  E-value=6.8  Score=31.90  Aligned_cols=112  Identities=13%  Similarity=0.126  Sum_probs=61.6

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~  124 (259)
                      ++++||-.|++.|.   ++..+++.|. +|++++-++...+.+.+.+...+  ++.++..|+.+..     +     ..+
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~   80 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESARNVIEKAAKVLN   80 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            35689999986532   3334455677 89999998877766544443322  4677788877522     0     013


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCch--------hHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPE--------TVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .+|.++........     .++.. .+        +......+++.+.+.++.+|.++++..
T Consensus        81 ~id~ii~~ag~~~~-----~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  136 (238)
T PRK05786         81 AIDGLVVTVGGYVE-----DTVEE-FSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS  136 (238)
T ss_pred             CCCEEEEcCCCcCC-----CchHH-HHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence            46777654321100     00000 00        001122346666677778888887654

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=87.89  E-value=2.2  Score=36.69  Aligned_cols=91  Identities=23%  Similarity=0.256  Sum_probs=56.8

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      .+.++.+||-.|+|. |..+..+++. |. ++++++.+++..+.+++ +   +.+.+..    .... .....+|+++..
T Consensus       152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~-~---g~~~~~~----~~~~-~~~~~~d~vid~  221 (319)
T cd08242         152 PITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR-L---GVETVLP----DEAE-SEGGGFDVVVEA  221 (319)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH-c---CCcEEeC----cccc-ccCCCCCEEEEC
Confidence            345788999998754 5555555544 65 79999999888887765 2   3321111    1111 233568988852


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ..                     ....+..+.+.|+++|.++..
T Consensus       222 ~g---------------------~~~~~~~~~~~l~~~g~~v~~  244 (319)
T cd08242         222 TG---------------------SPSGLELALRLVRPRGTVVLK  244 (319)
T ss_pred             CC---------------------ChHHHHHHHHHhhcCCEEEEE
Confidence            10                     023567778889999999974

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=87.86  E-value=2.1  Score=37.57  Aligned_cols=99  Identities=20%  Similarity=0.315  Sum_probs=63.4

Q ss_pred             cCCCCCcEEEEcCCC--CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC--cC-CCCcee
Q 025039           55 HIKPNSSVLELGCGN--SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL--PF-SNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~--G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~--~~-~~~~fD  127 (259)
                      .++++.+||-.|+..  |..++.|++. |. .++++--+++-.+.+++.    +.+. +.+...|+.+-  .. ....+|
T Consensus       139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~l----GAd~vi~y~~~~~~~~v~~~t~g~gvD  213 (326)
T COG0604         139 GLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKEL----GADHVINYREEDFVEQVRELTGGKGVD  213 (326)
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhc----CCCEEEcCCcccHHHHHHHHcCCCCce
Confidence            356789999999544  7788888877 44 677777677655555443    4322 33334443321  11 224699


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +|+..-.                      ...+....+.|+++|.++.+....
T Consensus       214 vv~D~vG----------------------~~~~~~~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         214 VVLDTVG----------------------GDTFAASLAALAPGGRLVSIGALS  244 (326)
T ss_pred             EEEECCC----------------------HHHHHHHHHHhccCCEEEEEecCC
Confidence            9996321                      256777889999999999876544

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=87.81  E-value=2  Score=36.21  Aligned_cols=77  Identities=21%  Similarity=0.282  Sum_probs=48.3

Q ss_pred             hHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCch
Q 025039           73 SEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPE  151 (259)
Q Consensus        73 ~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~  151 (259)
                      +..|.+.|+. +|+|.|.++..++.+.+.    |+  +.-...+...  .  ..+|+|+..-+                 
T Consensus         2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~--~~~~~~~~~~--~--~~~DlvvlavP-----------------   54 (258)
T PF02153_consen    2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GI--IDEASTDIEA--V--EDADLVVLAVP-----------------   54 (258)
T ss_dssp             HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TS--SSEEESHHHH--G--GCCSEEEE-S------------------
T ss_pred             hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CC--eeeccCCHhH--h--cCCCEEEEcCC-----------------
Confidence            5677788865 999999999998888654    32  2112222111  1  34699886433                 


Q ss_pred             hHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          152 TVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       152 ~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                       .....++++++...+++|+.+.=++
T Consensus        55 -~~~~~~~l~~~~~~~~~~~iv~Dv~   79 (258)
T PF02153_consen   55 -VSAIEDVLEEIAPYLKPGAIVTDVG   79 (258)
T ss_dssp             -HHHHHHHHHHHHCGS-TTSEEEE--
T ss_pred             -HHHHHHHHHHhhhhcCCCcEEEEeC
Confidence             3567889999999999988777543

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=87.58  E-value=2.9  Score=36.11  Aligned_cols=90  Identities=21%  Similarity=0.225  Sum_probs=54.6

Q ss_pred             CcEEEEcCCC-C-cchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           60 SSVLELGCGN-S-RLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        60 ~~vLDiGcG~-G-~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .+|.-+|+|. | .++..+.+.|.. +|+++|.+++.++.+++.    +.  ......+..+.   -...|+|+..-+. 
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~--~~~~~~~~~~~---~~~aDvViiavp~-   76 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GL--GDRVTTSAAEA---VKGADLVILCVPV-   76 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CC--CceecCCHHHH---hcCCCEEEECCCH-
Confidence            5789999987 3 455566666653 899999999877766532    22  11111121111   1357988854321 


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                                       .....++..+...+++|+.++.+
T Consensus        77 -----------------~~~~~v~~~l~~~l~~~~iv~dv   99 (307)
T PRK07502         77 -----------------GASGAVAAEIAPHLKPGAIVTDV   99 (307)
T ss_pred             -----------------HHHHHHHHHHHhhCCCCCEEEeC
Confidence                             33456777777888888866543

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=87.17  E-value=2.8  Score=31.83  Aligned_cols=91  Identities=21%  Similarity=0.375  Sum_probs=55.1

Q ss_pred             EEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc----------cCCCcCCCCceeEE
Q 025039           62 VLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD----------MLDLPFSNDCFDVV  129 (259)
Q Consensus        62 vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d----------~~~~~~~~~~fD~V  129 (259)
                      |+-+|+|. |. ++..|++.|. +|+.+.-.+ .++..++.    +   +.+...+          ..........+|+|
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~----g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   71 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQ----G---LTITGPDGDETVQPPIVISAPSADAGPYDLV   71 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHH----C---EEEEETTEEEEEEEEEEESSHGHHHSTESEE
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhhe----e---EEEEecccceecccccccCcchhccCCCcEE
Confidence            56788887 54 4445556566 899999877 56654443    1   2222111          11111134679998


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +..-                  ...+..++++.+.+.+.|+..+++.-.+
T Consensus        72 iv~v------------------Ka~~~~~~l~~l~~~~~~~t~iv~~qNG  103 (151)
T PF02558_consen   72 IVAV------------------KAYQLEQALQSLKPYLDPNTTIVSLQNG  103 (151)
T ss_dssp             EE-S------------------SGGGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred             EEEe------------------cccchHHHHHHHhhccCCCcEEEEEeCC
Confidence            8532                  1135567899999999999888876444

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR00518 alaDH alanine dehydrogenase

Probab=86.86  E-value=1.1  Score=39.92  Aligned_cols=106  Identities=12%  Similarity=0.178  Sum_probs=57.8

Q ss_pred             CCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           58 PNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        58 ~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      ++.+|+-+|+|. |..+...+.. |. +|+.+|.++..++.+...+..    .+.....+...+.-.-..+|+|+.....
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~~~~l~~~l~~aDvVI~a~~~  240 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG----RIHTRYSNAYEIEDAVKRADLLIGAVLI  240 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc----eeEeccCCHHHHHHHHccCCEEEEcccc
Confidence            456799999986 6666655544 66 899999998776666544321    1211111111111011358998864211


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF  183 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  183 (259)
                      ..               ...+.-+-++..+.++||++++-+...+...
T Consensus       241 ~g---------------~~~p~lit~~~l~~mk~g~vIvDva~d~GG~  273 (370)
T TIGR00518       241 PG---------------AKAPKLVSNSLVAQMKPGAVIVDVAIDQGGC  273 (370)
T ss_pred             CC---------------CCCCcCcCHHHHhcCCCCCEEEEEecCCCCC
Confidence            00               0001112355556789999988776655443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=86.81  E-value=3.4  Score=40.50  Aligned_cols=98  Identities=16%  Similarity=0.233  Sum_probs=66.0

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------C-C---------CCeEEEEcccCCCc
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G-Y---------KEVKVLEADMLDLP  120 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~-~---------~~v~~~~~d~~~~~  120 (259)
                      .+|--+|+|+  +.++..++..|. .|+.+|.+++.++.+.+++...       + +         .++++. .|...  
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--  411 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG--  411 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence            5699999998  445666677788 8999999999999887765322       1 0         112211 12211  


Q ss_pred             CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                        -...|+|+-     .+           +++.+..++++.++-++++|+.+|...+.+
T Consensus       412 --~~~aDlViE-----Av-----------~E~l~~K~~vf~~l~~~~~~~~ilasNTSs  452 (737)
T TIGR02441       412 --FKNADMVIE-----AV-----------FEDLSLKHKVIKEVEAVVPPHCIIASNTSA  452 (737)
T ss_pred             --hccCCeehh-----hc-----------cccHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence              134677663     22           246678889999999999999988865544

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=86.75  E-value=1.5  Score=39.08  Aligned_cols=94  Identities=17%  Similarity=0.257  Sum_probs=55.0

Q ss_pred             CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHH-HHHHHHHHhhcCCCCeEEEE-cccCCCcCCCCceeEEEec
Q 025039           57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVA-VEKMQERLLLKGYKEVKVLE-ADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~-~~~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~V~~~  132 (259)
                      .++.+||-.|+|. |..+..+++. |. ++++++.+++. .+.+++    .|.+.  ++. .+...+....+.+|+|+..
T Consensus       177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~----lGa~~--~i~~~~~~~v~~~~~~~D~vid~  249 (375)
T PLN02178        177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDR----LGADS--FLVTTDSQKMKEAVGTMDFIIDT  249 (375)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHh----CCCcE--EEcCcCHHHHHHhhCCCcEEEEC
Confidence            4678999999876 7777777665 55 78999887543 344432    24321  111 1100110001247888742


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .                     .....+....+.+++||.++.+..
T Consensus       250 ~---------------------G~~~~~~~~~~~l~~~G~iv~vG~  274 (375)
T PLN02178        250 V---------------------SAEHALLPLFSLLKVSGKLVALGL  274 (375)
T ss_pred             C---------------------CcHHHHHHHHHhhcCCCEEEEEcc
Confidence            1                     112356777889999999998754

>cd08293 PTGR2 Prostaglandin reductase

Probab=86.72  E-value=7.2  Score=33.89  Aligned_cols=97  Identities=15%  Similarity=0.256  Sum_probs=58.1

Q ss_pred             CCCC--CcEEEEcC-C-CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcccCC-C-cCCCCcee
Q 025039           56 IKPN--SSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L-PFSNDCFD  127 (259)
Q Consensus        56 ~~~~--~~vLDiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~-~~~~~~fD  127 (259)
                      +.++  .+||-.|+ | .|..+..+++. |..++++++.+++..+.+++.+   |.+.+ .....++.+ + ......+|
T Consensus       150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~~vi~~~~~~~~~~i~~~~~~gvd  226 (345)
T cd08293         150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFDAAINYKTDNVAERLRELCPEGVD  226 (345)
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHCCCCce
Confidence            4444  79999987 3 37777777776 4436999999988777766533   32221 111111111 0 01124689


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +|+....                    .  ..+..+.+.|+++|.++.+.
T Consensus       227 ~vid~~g--------------------~--~~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         227 VYFDNVG--------------------G--EISDTVISQMNENSHIILCG  254 (345)
T ss_pred             EEEECCC--------------------c--HHHHHHHHHhccCCEEEEEe
Confidence            8885211                    1  23567788999999999764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=86.72  E-value=2.3  Score=41.00  Aligned_cols=107  Identities=9%  Similarity=0.101  Sum_probs=59.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcC-------C-----C-eEEEeeCCH---HHHHHHHH-----------HHhh-----cC
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDG-------I-----T-AITCIDLSA---VAVEKMQE-----------RLLL-----KG  105 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~-------~-----~-~v~~vD~s~---~~~~~a~~-----------~~~~-----~~  105 (259)
                      +.-+|+|+|=|+|.......+..       +     . +++.+|..+   +-+..+.+           ....     .+
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            34789999999998666554321       2     2 789999643   33322221           1111     11


Q ss_pred             C-------C--CeEEEEcccCCC-cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHH-HHHHHHHHHhcccCCcEEE
Q 025039          106 Y-------K--EVKVLEADMLDL-PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-VMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       106 ~-------~--~v~~~~~d~~~~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~  174 (259)
                      +       .  .+++..+|+.+. +.-...+|+++..+    + ...+        +++. -.++++.+.++++|||.+.
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~----F-sP~~--------np~~W~~~~~~~l~~~~~~~~~~~  203 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG----F-APAK--------NPDMWSPNLFNALARLARPGATLA  203 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC----C-CCcc--------ChhhccHHHHHHHHHHhCCCCEEE
Confidence            1       1  123445666542 21124588888432    2 1111        1111 2589999999999999999


Q ss_pred             EEe
Q 025039          175 SVS  177 (259)
Q Consensus       175 ~~~  177 (259)
                      ..+
T Consensus       204 t~t  206 (662)
T PRK01747        204 TFT  206 (662)
T ss_pred             Eee
Confidence            644

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=86.64  E-value=3.5  Score=36.26  Aligned_cols=97  Identities=20%  Similarity=0.135  Sum_probs=57.2

Q ss_pred             CCCCcEEEEcCCC-CcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcccC----CC-c-CCCCcee
Q 025039           57 KPNSSVLELGCGN-SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADML----DL-P-FSNDCFD  127 (259)
Q Consensus        57 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~----~~-~-~~~~~fD  127 (259)
                      .++.+||-.|+|. |..+..+++.... ++++++.+++..+.+++    .+.+.+ .....+..    .+ . .....+|
T Consensus       176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d  251 (361)
T cd08231         176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDITGGRGAD  251 (361)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHhCCCCCc
Confidence            3678899998765 6666666666444 79999988877666643    233221 11111110    00 0 1224689


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+....                     ....+....+.|+++|.++.+..
T Consensus       252 ~vid~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~  281 (361)
T cd08231         252 VVIEASG---------------------HPAAVPEGLELLRRGGTYVLVGS  281 (361)
T ss_pred             EEEECCC---------------------ChHHHHHHHHHhccCCEEEEEcC
Confidence            8884211                     01356777889999999997653

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=86.59  E-value=6.2  Score=32.32  Aligned_cols=72  Identities=14%  Similarity=0.145  Sum_probs=46.8

Q ss_pred             CCcEEEEcCCCCc--chHHHHh--c--CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-CcCCCCceeEEE
Q 025039           59 NSSVLELGCGNSR--LSEGLYN--D--GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-LPFSNDCFDVVI  130 (259)
Q Consensus        59 ~~~vLDiGcG~G~--~~~~l~~--~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~fD~V~  130 (259)
                      ...+++.+|+.|.  .++.|+.  +  |. ++++|-+++..+...++.+...+..+ ++|+.++..+ +-..-..+|+++
T Consensus        42 AkliVe~~s~g~~~~ttiaLaaAAr~TgG-R~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v  120 (218)
T PF07279_consen   42 AKLIVEAWSSGGAISTTIALAAAARQTGG-RHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV  120 (218)
T ss_pred             ceEEEEEecCCCchHhHHHHHHHHHhcCC-eEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence            4678888666442  3444433  2  44 89999999988888888887777655 6888877432 211224588887


Q ss_pred             e
Q 025039          131 E  131 (259)
Q Consensus       131 ~  131 (259)
                      .
T Consensus       121 V  121 (218)
T PF07279_consen  121 V  121 (218)
T ss_pred             E
Confidence            4

The function of this family is unknown.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=86.54  E-value=3.6  Score=35.81  Aligned_cols=98  Identities=18%  Similarity=0.253  Sum_probs=60.8

Q ss_pred             cCCCCCcEEEEcC-C-CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEc-ccCC-C-cCCCCcee
Q 025039           55 HIKPNSSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEA-DMLD-L-PFSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~-~-~~~~~~fD  127 (259)
                      .+.++.+||-.|+ | .|..+..+++. |. ++++++.+++..+.+++.+   |.+.+ ..... +..+ + ......+|
T Consensus       148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvd  223 (338)
T cd08295         148 KPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNGID  223 (338)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhCCCCcE
Confidence            4567899999997 3 37777777765 55 8999998888777776533   32221 11111 2111 0 11124688


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+...                    .  ...+....+.|+++|.++.+..
T Consensus       224 ~v~d~~--------------------g--~~~~~~~~~~l~~~G~iv~~G~  252 (338)
T cd08295         224 IYFDNV--------------------G--GKMLDAVLLNMNLHGRIAACGM  252 (338)
T ss_pred             EEEECC--------------------C--HHHHHHHHHHhccCcEEEEecc
Confidence            887421                    1  1457788899999999997653

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=86.49  E-value=3  Score=36.18  Aligned_cols=98  Identities=14%  Similarity=0.188  Sum_probs=58.4

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEe
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIE  131 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~  131 (259)
                      .+.++.+||-.|||. |..+..+++. |. +++.++.+++..+.+++.    +.+. +.....+..........+|+++.
T Consensus       160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~----g~~~~i~~~~~~~~~~~~~~~~~d~vi~  234 (333)
T cd08296         160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKL----GAHHYIDTSKEDVAEALQELGGAKLILA  234 (333)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHc----CCcEEecCCCccHHHHHHhcCCCCEEEE
Confidence            345678999999765 6666666665 55 899999998877777542    3211 11111111110001134788874


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ...                     ....+..+.+.|+++|.++....
T Consensus       235 ~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~  260 (333)
T cd08296         235 TAP---------------------NAKAISALVGGLAPRGKLLILGA  260 (333)
T ss_pred             CCC---------------------chHHHHHHHHHcccCCEEEEEec
Confidence            210                     02467778889999999997654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=86.47  E-value=3.3  Score=35.74  Aligned_cols=95  Identities=21%  Similarity=0.194  Sum_probs=57.8

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-CCCCceeEEEe
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIE  131 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~  131 (259)
                      .+.++.+||-.|||. |..+..+++. |. ++++++.++...+.+++.    +...  ++...-.... .....+|+++.
T Consensus       159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~----g~~~--~~~~~~~~~~~~~~~~~d~vi~  231 (330)
T cd08245         159 GPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKL----GADE--VVDSGAELDEQAAAGGADVILV  231 (330)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh----CCcE--EeccCCcchHHhccCCCCEEEE
Confidence            356778899999874 6666666665 55 899999998887777432    2111  1111100000 01235888874


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ...                     ....+..+.+.|+++|.++.+.
T Consensus       232 ~~~---------------------~~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         232 TVV---------------------SGAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             CCC---------------------cHHHHHHHHHhcccCCEEEEEC
Confidence            211                     0135677788999999998764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=86.42  E-value=6.4  Score=33.91  Aligned_cols=92  Identities=22%  Similarity=0.218  Sum_probs=56.3

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      .+.++.+||-.|||. |..+..+++. |. ++++++.+++..+.+++    .+.+  .++.  ....  ....+|+++..
T Consensus       164 ~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~----~g~~--~~~~--~~~~--~~~~vD~vi~~  232 (329)
T cd08298         164 GLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARE----LGAD--WAGD--SDDL--PPEPLDAAIIF  232 (329)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHH----hCCc--EEec--cCcc--CCCcccEEEEc
Confidence            355778888888765 5555555554 54 89999888876666643    2321  1111  1111  23458887742


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ..                     ....+..+.+.|+++|.++....
T Consensus       233 ~~---------------------~~~~~~~~~~~l~~~G~~v~~g~  257 (329)
T cd08298         233 AP---------------------VGALVPAALRAVKKGGRVVLAGI  257 (329)
T ss_pred             CC---------------------cHHHHHHHHHHhhcCCEEEEEcC
Confidence            11                     02468889999999999997653

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=86.38  E-value=1.2  Score=38.88  Aligned_cols=98  Identities=22%  Similarity=0.342  Sum_probs=57.4

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-C--cCCCCceeE
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L--PFSNDCFDV  128 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~--~~~~~~fD~  128 (259)
                      .+.++.+||..|+|. |..+..+++. |...+++++.++...+.+++.    +... +.....++.+ +  ......+|+
T Consensus       164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d~  239 (347)
T cd05278         164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELTGGRGVDC  239 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCcE
Confidence            345778899877754 6666666665 433788888887777666543    2111 1111111111 0  012356898


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ++....                     ....+..+.+.|+++|.++...
T Consensus       240 vld~~g---------------------~~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         240 VIEAVG---------------------FEETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             EEEccC---------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence            885211                     0146778888999999998764

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=86.34  E-value=5.1  Score=38.45  Aligned_cols=65  Identities=20%  Similarity=0.324  Sum_probs=46.9

Q ss_pred             CCcEEEEcCCC-CcchH-HHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEe
Q 025039           59 NSSVLELGCGN-SRLSE-GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE  131 (259)
Q Consensus        59 ~~~vLDiGcG~-G~~~~-~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~  131 (259)
                      ..+|+-+|||. |.... .+.+.+. .++.+|.+++.++.+++.       +..++.+|..+..    ..-+..|++++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vvv  470 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF-------GMKVFYGDATRMDLLESAGAAKAEVLIN  470 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc-------CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence            46899999987 66444 4455566 899999999999988652       4577889988743    22346777775

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=86.11  E-value=4.8  Score=39.27  Aligned_cols=98  Identities=17%  Similarity=0.193  Sum_probs=65.8

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------C----------CCCeEEEEcccCCCc
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G----------YKEVKVLEADMLDLP  120 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~v~~~~~d~~~~~  120 (259)
                      .+|--+|+|+  +.++..++..|. .|+.+|.+++.++.+++++...       +          ..+++.. .|...  
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--  389 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG--  389 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence            4699999998  456666777888 9999999999999877654321       1          0112211 11111  


Q ss_pred             CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                        -...|+|+-.     +           +++.+..++++.++-++++|+.+|...+.+
T Consensus       390 --~~~aDlViEa-----v-----------~E~l~~K~~vf~~l~~~~~~~~ilasnTS~  430 (714)
T TIGR02437       390 --FDNVDIVVEA-----V-----------VENPKVKAAVLAEVEQHVREDAILASNTST  430 (714)
T ss_pred             --hcCCCEEEEc-----C-----------cccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence              1357777732     2           145677889999999999999888765544

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.92  E-value=3.4  Score=35.97  Aligned_cols=100  Identities=21%  Similarity=0.305  Sum_probs=60.5

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEE-EcccCC-C-cCCCCcee
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVL-EADMLD-L-PFSNDCFD  127 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~-~~d~~~-~-~~~~~~fD  127 (259)
                      ..+.|+.+|--+|.|. |.++..++++ |. +|+++|-+..--+.+-+.+   |.+. +... ..|+.+ + ..-+.-.|
T Consensus       177 ~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~~L---GAd~fv~~~~d~d~~~~~~~~~dg~~~  252 (360)
T KOG0023|consen  177 SGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIKSL---GADVFVDSTEDPDIMKAIMKTTDGGID  252 (360)
T ss_pred             cCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHHhc---CcceeEEecCCHHHHHHHHHhhcCcce
Confidence            3456888888888776 8888888876 55 9999999875555554443   4322 2222 122211 0 01123344


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .|...                       ....++.+..+||++|.++++..-.
T Consensus       253 ~v~~~-----------------------a~~~~~~~~~~lk~~Gt~V~vg~p~  282 (360)
T KOG0023|consen  253 TVSNL-----------------------AEHALEPLLGLLKVNGTLVLVGLPE  282 (360)
T ss_pred             eeeec-----------------------cccchHHHHHHhhcCCEEEEEeCcC
Confidence            44421                       1234677888999999999986544

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=85.88  E-value=17  Score=30.28  Aligned_cols=75  Identities=12%  Similarity=0.070  Sum_probs=43.2

Q ss_pred             CCCcEEEEcCCCC-cc----hHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CC
Q 025039           58 PNSSVLELGCGNS-RL----SEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FS  122 (259)
Q Consensus        58 ~~~~vLDiGcG~G-~~----~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~  122 (259)
                      .++.+|-.|+++| .+    +..+++.|. +|+.++.++...+.+++.....+  .+.++..|+.+..          ..
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~   85 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAEE   85 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHHH
Confidence            4678999998752 44    445555677 78888887654333333222211  3345667776521          11


Q ss_pred             CCceeEEEeccee
Q 025039          123 NDCFDVVIEKATM  135 (259)
Q Consensus       123 ~~~fD~V~~~~~l  135 (259)
                      .+..|+++.+..+
T Consensus        86 ~g~ld~lv~nAg~   98 (258)
T PRK07533         86 WGRLDFLLHSIAF   98 (258)
T ss_pred             cCCCCEEEEcCcc
Confidence            2568998877543

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=85.84  E-value=0.96  Score=37.88  Aligned_cols=56  Identities=13%  Similarity=0.105  Sum_probs=37.7

Q ss_pred             hHHHHhhcccCC--CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh
Q 025039           46 SHFRHLVQPHIK--PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL  102 (259)
Q Consensus        46 ~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~  102 (259)
                      ..+...+...++  +..+++|+-||+|..+..+...+. +++.-|+++..+...+..++
T Consensus         6 ~~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~-~vi~ND~~~~l~~~~~~~l~   63 (260)
T PF02086_consen    6 RKLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGK-RVIINDINPDLINFWKAVLK   63 (260)
T ss_dssp             GGGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SS-EEEEEES-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEecchhHHHHHhccccc-ceeeeechHHHHHHHHHHHh
Confidence            345555555565  578999999999999988876555 89999999988877774443

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=85.82  E-value=7.6  Score=33.58  Aligned_cols=113  Identities=16%  Similarity=0.166  Sum_probs=74.6

Q ss_pred             HhhcccCCCC-CcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCC---CeEEEEcccCCCc---
Q 025039           50 HLVQPHIKPN-SSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYK---EVKVLEADMLDLP---  120 (259)
Q Consensus        50 ~~l~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~---~v~~~~~d~~~~~---  120 (259)
                      +.+...+..+ ..|+-+|||-=.-+-.+  .++.  +|+-+|. |+.++.=++.+...+..   ..+.+..|+.+-.   
T Consensus        83 ~~~~~~~~~g~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~  159 (297)
T COG3315          83 DFVRAALDAGIRQVVILGAGLDTRAYRL--DWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQ  159 (297)
T ss_pred             HHHHHHHHhcccEEEEeccccccceeec--CCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHH
Confidence            3444444444 78999999853322222  1222  5555553 77888777777776632   4788888887421   


Q ss_pred             -CC-----CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          121 -FS-----NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       121 -~~-----~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                       +.     .+.--++++-+++-++             ..+...++++.+.....||..+++...
T Consensus       160 ~L~~~G~d~~~pt~~iaEGLl~YL-------------~~~~v~~ll~~I~~~~~~gS~~~~~~~  210 (297)
T COG3315         160 ALAAAGFDRSRPTLWIAEGLLMYL-------------PEEAVDRLLSRIAALSAPGSRVAFDYS  210 (297)
T ss_pred             HHHhcCCCcCCCeEEEeccccccC-------------CHHHHHHHHHHHHHhCCCCceEEEecc
Confidence             22     2334467888888887             667889999999999999998887643

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=85.76  E-value=2.7  Score=37.12  Aligned_cols=100  Identities=16%  Similarity=0.213  Sum_probs=59.8

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEc--ccCC-C-cCCCCcee
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEA--DMLD-L-PFSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~--d~~~-~-~~~~~~fD  127 (259)
                      .+.++.+||-.|+|. |..+..+++. |..++++++.+++..+.+++.    |... +.....  ++.+ + ....+.+|
T Consensus       184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~v~~~~~~~~d  259 (369)
T cd08301         184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF----GVTEFVNPKDHDKPVQEVIAEMTGGGVD  259 (369)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCceEEcccccchhHHHHHHHHhCCCCC
Confidence            456789999999875 6666666665 433799999999888877542    3211 111110  1100 0 11123588


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEecC
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSFG  179 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  179 (259)
                      +++....                     ....+..+.+.+++| |.++++...
T Consensus       260 ~vid~~G---------------------~~~~~~~~~~~~~~~~g~~v~~g~~  291 (369)
T cd08301         260 YSFECTG---------------------NIDAMISAFECVHDGWGVTVLLGVP  291 (369)
T ss_pred             EEEECCC---------------------ChHHHHHHHHHhhcCCCEEEEECcC
Confidence            8874210                     124566677888996 999887543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK07109 short chain dehydrogenase; Provisional

Probab=85.69  E-value=12  Score=32.68  Aligned_cols=74  Identities=15%  Similarity=0.172  Sum_probs=49.1

Q ss_pred             CCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCCc
Q 025039           59 NSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC  125 (259)
Q Consensus        59 ~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~~  125 (259)
                      +.+||-.|++.|.   ++..+++.|. +|+.++-++..++...+.+...+ .++.++..|+.+..          ..-+.
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g-~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~   85 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAG-GEALAVVADVADAEAVQAAADRAEEELGP   85 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC-CcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            4678888876543   3345566777 89999999888877776665544 25677788876632          01246


Q ss_pred             eeEEEecce
Q 025039          126 FDVVIEKAT  134 (259)
Q Consensus       126 fD~V~~~~~  134 (259)
                      +|+++.+..
T Consensus        86 iD~lInnAg   94 (334)
T PRK07109         86 IDTWVNNAM   94 (334)
T ss_pred             CCEEEECCC
Confidence            898887643

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=85.64  E-value=2.4  Score=38.52  Aligned_cols=91  Identities=10%  Similarity=0.193  Sum_probs=55.6

Q ss_pred             CCCCcEEEEcCCC-CcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      -.+.+|+-+|+|. |......++ .|. +|+.+|.++.....+..    .|+   .+.  ++.+. .  ..+|+|+... 
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~---~v~--~l~ea-l--~~aDVVI~aT-  275 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGF---RVM--TMEEA-A--ELGDIFVTAT-  275 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCC---Eec--CHHHH-H--hCCCEEEECC-
Confidence            3688999999997 655444443 455 89999999865433322    132   221  22221 1  2579987531 


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHH-HHHhcccCCcEEEEEecCCc
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLE-GVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~  181 (259)
                                          ....++. .....+|+|++++.......
T Consensus       276 --------------------G~~~vI~~~~~~~mK~GailiNvG~~d~  303 (425)
T PRK05476        276 --------------------GNKDVITAEHMEAMKDGAILANIGHFDN  303 (425)
T ss_pred             --------------------CCHHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence                                1123454 67889999999998765443

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=85.62  E-value=4.2  Score=35.44  Aligned_cols=99  Identities=23%  Similarity=0.377  Sum_probs=59.6

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEcc-------cCCCcCCC
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEAD-------MLDLPFSN  123 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d-------~~~~~~~~  123 (259)
                      ..+.++.+||-.|+|. |..+..+++. |...+++++.+++..+.+++.    +.+.+ .....+       +... ...
T Consensus       158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~-~~~  232 (343)
T cd05285         158 AGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAEL-LGG  232 (343)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHH-hCC
Confidence            3456788999888765 6666666665 442388998888777766542    32221 111111       1111 223


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ..+|+|+.....                     ...+....+.|+++|.++.+..
T Consensus       233 ~~~d~vld~~g~---------------------~~~~~~~~~~l~~~G~~v~~g~  266 (343)
T cd05285         233 KGPDVVIECTGA---------------------ESCIQTAIYATRPGGTVVLVGM  266 (343)
T ss_pred             CCCCEEEECCCC---------------------HHHHHHHHHHhhcCCEEEEEcc
Confidence            458998853110                     1367788899999999987654

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=85.59  E-value=7.3  Score=33.27  Aligned_cols=95  Identities=20%  Similarity=0.261  Sum_probs=55.5

Q ss_pred             cEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC---C-eEEEEcccCCCcCCCCceeEEEecce
Q 025039           61 SVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK---E-VKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        61 ~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~-v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +|+-+|+|. | .++..|++.|. +|+.++.+++.++..++.    ++.   . ......-..+.. ....+|+|+..-.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k   75 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNEN----GLRLEDGEITVPVLAADDPA-ELGPQDLVILAVK   75 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHc----CCcccCCceeecccCCCChh-HcCCCCEEEEecc
Confidence            588899987 4 45556677776 899999877766665542    210   0 100000001111 1156898875321


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                                        ......+++.+...+.++..++....+
T Consensus        76 ------------------~~~~~~~~~~l~~~l~~~~~iv~~~nG  102 (304)
T PRK06522         76 ------------------AYQLPAALPSLAPLLGPDTPVLFLQNG  102 (304)
T ss_pred             ------------------cccHHHHHHHHhhhcCCCCEEEEecCC
Confidence                              124567888888888888777765443

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=85.50  E-value=2.7  Score=34.11  Aligned_cols=33  Identities=30%  Similarity=0.365  Sum_probs=26.6

Q ss_pred             CCCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCC
Q 025039           58 PNSSVLELGCGN-S-RLSEGLYNDGITAITCIDLS   90 (259)
Q Consensus        58 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s   90 (259)
                      ...+||-+|||. | ..+..|+..|..+++.+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            467899999996 4 46667788888899999976

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.40  E-value=3.6  Score=35.37  Aligned_cols=75  Identities=19%  Similarity=0.246  Sum_probs=57.2

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      .+..||--|+|.|.   ++..++++|. +++..|++++..+...+.++..|  .+.....|+.+..          .+-+
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~G  113 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEVG  113 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            46789999999874   6778888888 89999999999888888877665  5666666776521          2346


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+..+
T Consensus       114 ~V~ILVNNAGI  124 (300)
T KOG1201|consen  114 DVDILVNNAGI  124 (300)
T ss_pred             CceEEEecccc
Confidence            79999988654

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=85.36  E-value=6  Score=38.64  Aligned_cols=98  Identities=18%  Similarity=0.221  Sum_probs=65.8

Q ss_pred             CcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------C----------CCCeEEEEcccCCCc
Q 025039           60 SSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G----------YKEVKVLEADMLDLP  120 (259)
Q Consensus        60 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~v~~~~~d~~~~~  120 (259)
                      .+|.-||+|+ | .++..++..|. .|+.+|.+++.++.+.+++...       +          ..++++. .|...  
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--  389 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG--  389 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence            5799999998 4 56666777788 9999999999998877654321       1          0112211 12211  


Q ss_pred             CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                        -...|+|+-.     +           +++.+..++++.++-++++|+.+|...+.+
T Consensus       390 --~~~aDlViEa-----v-----------~E~l~~K~~vf~~l~~~~~~~~ilasNTSs  430 (715)
T PRK11730        390 --FERVDVVVEA-----V-----------VENPKVKAAVLAEVEQKVREDTILASNTST  430 (715)
T ss_pred             --hcCCCEEEec-----c-----------cCcHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence              1356777632     2           256678889999999999999888765544

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=85.32  E-value=1.2  Score=38.97  Aligned_cols=99  Identities=25%  Similarity=0.318  Sum_probs=59.2

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-C-c-CCCCceeE
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L-P-FSNDCFDV  128 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~-~-~~~~~fD~  128 (259)
                      .+.++.+||-.|+|. |..+..+++. |...+++++.+++..+.+++.    +.+. +.....++.+ + . .....+|+
T Consensus       169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~~d~  244 (351)
T cd08233         169 GFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGGVDV  244 (351)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCCCCE
Confidence            345788999998764 5666666665 443789999888887777542    3211 1111111111 1 0 12235899


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |+....                     ....+..+.+.|+++|.++.+..
T Consensus       245 vid~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         245 SFDCAG---------------------VQATLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             EEECCC---------------------CHHHHHHHHHhccCCCEEEEEcc
Confidence            885321                     02356778889999999998754

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=85.24  E-value=3.5  Score=36.40  Aligned_cols=96  Identities=22%  Similarity=0.338  Sum_probs=58.7

Q ss_pred             CCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc---ccCC-C-cCCCCceeE
Q 025039           56 IKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DMLD-L-PFSNDCFDV  128 (259)
Q Consensus        56 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~-~-~~~~~~fD~  128 (259)
                      +.++.+||-.|+|. |..+..+++. |...+++++.++...+.+++.    +..  .++..   +..+ + ......+|+
T Consensus       184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~--~~i~~~~~~~~~~v~~~~~~~~d~  257 (365)
T cd08278         184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT--HVINPKEEDLVAAIREITGGGVDY  257 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc--EEecCCCcCHHHHHHHHhCCCCcE
Confidence            45678899998765 6666666665 553699999998877766542    221  12211   1100 0 011346898


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |+.....                     ...+..+.+.|+++|.++.+..
T Consensus       258 vld~~g~---------------------~~~~~~~~~~l~~~G~~v~~g~  286 (365)
T cd08278         258 ALDTTGV---------------------PAVIEQAVDALAPRGTLALVGA  286 (365)
T ss_pred             EEECCCC---------------------cHHHHHHHHHhccCCEEEEeCc
Confidence            8842110                     1357788889999999997643

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=84.99  E-value=6.1  Score=37.73  Aligned_cols=97  Identities=18%  Similarity=0.239  Sum_probs=61.6

Q ss_pred             CcEEEEcCCC-Ccch-HHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEecc
Q 025039           60 SSVLELGCGN-SRLS-EGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEKA  133 (259)
Q Consensus        60 ~~vLDiGcG~-G~~~-~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~~  133 (259)
                      .+|+-+|+|. |... ..+.+.+. .++.+|.+++.++.+++.       ...++.+|..+..    ..-+..|.+++.-
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vv~~~  472 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKY-------GYKVYYGDATQLELLRAAGAEKAEAIVITC  472 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC-------CCeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence            5788888776 5543 33444566 899999999999988652       4577889988732    2234677777521


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                                       ++.+....+.. ..+.+.|...++....+..+
T Consensus       473 -----------------~d~~~n~~i~~-~~r~~~p~~~IiaRa~~~~~  503 (601)
T PRK03659        473 -----------------NEPEDTMKIVE-LCQQHFPHLHILARARGRVE  503 (601)
T ss_pred             -----------------CCHHHHHHHHH-HHHHHCCCCeEEEEeCCHHH
Confidence                             12233333333 45557788888876655433

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=84.89  E-value=1.6  Score=38.71  Aligned_cols=63  Identities=19%  Similarity=0.241  Sum_probs=54.2

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL  119 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  119 (259)
                      .+|.+|+|.+|-.|.-+.+++..-.+  ++.++|.++...+..++.+...|+..+...++|+...
T Consensus       212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t  276 (413)
T KOG2360|consen  212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT  276 (413)
T ss_pred             CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC
Confidence            35789999999999999999886442  8999999999999999999988987777778888774

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=84.79  E-value=2.7  Score=37.17  Aligned_cols=99  Identities=18%  Similarity=0.269  Sum_probs=58.5

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEc--ccCC-C-cCCCCcee
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEA--DMLD-L-PFSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~--d~~~-~-~~~~~~fD  127 (259)
                      .+.++.+||-.|+|. |..+..+++. |...+++++.++...+.+++ +   +... +.....  +..+ + ....+.+|
T Consensus       180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~---g~~~~v~~~~~~~~~~~~l~~~~~~~~d  255 (365)
T cd05279         180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-L---GATECINPRDQDKPIVEVLTEMTDGGVD  255 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-h---CCCeecccccccchHHHHHHHHhCCCCc
Confidence            456788999988765 6666656655 54358899988888777754 2   3211 111111  1101 0 01124688


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhccc-CCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLK-PDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~  178 (259)
                      +|+....                     ....+..+.+.|+ ++|.++.+..
T Consensus       256 ~vid~~g---------------------~~~~~~~~~~~l~~~~G~~v~~g~  286 (365)
T cd05279         256 YAFEVIG---------------------SADTLKQALDATRLGGGTSVVVGV  286 (365)
T ss_pred             EEEECCC---------------------CHHHHHHHHHHhccCCCEEEEEec
Confidence            8884210                     0245677888899 9999997643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=84.77  E-value=1.4  Score=36.29  Aligned_cols=60  Identities=15%  Similarity=0.277  Sum_probs=45.2

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD  118 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~  118 (259)
                      .++-|.+||.|.|..+..+.+++..++..++.+...+.-.+...+... ....+.++|+..
T Consensus        50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR  109 (326)
T KOG0821|consen   50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLR  109 (326)
T ss_pred             ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC-cceEEeccccce
Confidence            457899999999999999999998889999998887776655433222 246666666654

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=84.48  E-value=1.4  Score=38.26  Aligned_cols=98  Identities=20%  Similarity=0.281  Sum_probs=59.3

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-C--cCCCCceeE
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L--PFSNDCFDV  128 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~--~~~~~~fD~  128 (259)
                      .+.++.+||..|+|. |..+..+++. |. +++++..+++..+.+++.    +.+. +.....++.+ +  ..+...+|+
T Consensus       156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~vd~  230 (337)
T cd08261         156 GVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGADV  230 (337)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCCCE
Confidence            456788999998764 6666666665 55 888888888877776442    2211 1111111111 1  112345899


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ++....                     -...+..+.+.|+++|.++....
T Consensus       231 vld~~g---------------------~~~~~~~~~~~l~~~G~~i~~g~  259 (337)
T cd08261         231 VIDATG---------------------NPASMEEAVELVAHGGRVVLVGL  259 (337)
T ss_pred             EEECCC---------------------CHHHHHHHHHHHhcCCEEEEEcC
Confidence            885310                     02456778889999999987643

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=84.45  E-value=7.2  Score=33.43  Aligned_cols=92  Identities=18%  Similarity=0.288  Sum_probs=52.2

Q ss_pred             cEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc------c-CCCcCCCCceeEEEe
Q 025039           61 SVLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD------M-LDLPFSNDCFDVVIE  131 (259)
Q Consensus        61 ~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d------~-~~~~~~~~~fD~V~~  131 (259)
                      +|+-+|+|. |. ++..|++.|. +|+.++. ++.++..++.    ++ .+....++      . .+.......+|+|+.
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~----g~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil   74 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRER----GL-VIRSDHGDAVVPGPVITDPEELTGPFDLVIL   74 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhC----Ce-EEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence            588899998 43 5566677776 8999988 6666655432    21 11100000      0 111111246888774


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .-.                  ......+++.+...+.++..++...
T Consensus        75 avk------------------~~~~~~~~~~l~~~~~~~~~ii~~~  102 (305)
T PRK12921         75 AVK------------------AYQLDAAIPDLKPLVGEDTVIIPLQ  102 (305)
T ss_pred             Eec------------------ccCHHHHHHHHHhhcCCCCEEEEee
Confidence            321                  1245678888888888887766553

>TIGR00936 ahcY adenosylhomocysteinase

Probab=84.04  E-value=3.2  Score=37.50  Aligned_cols=90  Identities=11%  Similarity=0.159  Sum_probs=55.5

Q ss_pred             CCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      ..+++|+-+|+|. |......++. |. +|+++|.++.....+..    .|+   .+.  ++.+. .  ...|+|++...
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~----~G~---~v~--~leea-l--~~aDVVItaTG  259 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAM----DGF---RVM--TMEEA-A--KIGDIFITATG  259 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHh----cCC---EeC--CHHHH-H--hcCCEEEECCC
Confidence            4688999999998 6666655554 55 89999998864433322    132   222  22221 1  24688875311


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHH-HHHhcccCCcEEEEEecCC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLE-GVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~  180 (259)
                                           ...++. .....+|+|++++......
T Consensus       260 ---------------------~~~vI~~~~~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       260 ---------------------NKDVIRGEHFENMKDGAIVANIGHFD  285 (406)
T ss_pred             ---------------------CHHHHHHHHHhcCCCCcEEEEECCCC
Confidence                                 123444 4778999999999876554

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08324 short chain dehydrogenase; Validated

Probab=83.80  E-value=9.5  Score=37.00  Aligned_cols=74  Identities=20%  Similarity=0.250  Sum_probs=47.2

Q ss_pred             CCCcEEEEcCCCC--c-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039           58 PNSSVLELGCGNS--R-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~  124 (259)
                      ++++||-.|++.|  . ++..+++.|. +|+++|.++..++.+.+.+...  ..+.++..|+.+..     +     ..+
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g  497 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG  497 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4678888887543  2 3344555677 8999999988777666554332  25677777876521     1     123


Q ss_pred             ceeEEEecce
Q 025039          125 CFDVVIEKAT  134 (259)
Q Consensus       125 ~fD~V~~~~~  134 (259)
                      .+|+|+.+..
T Consensus       498 ~iDvvI~~AG  507 (681)
T PRK08324        498 GVDIVVSNAG  507 (681)
T ss_pred             CCCEEEECCC
Confidence            6899887643

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=83.61  E-value=4.4  Score=34.81  Aligned_cols=94  Identities=17%  Similarity=0.297  Sum_probs=58.6

Q ss_pred             CcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh-------hcCC----------CCeEEEEcccCCCc
Q 025039           60 SSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLL-------LKGY----------KEVKVLEADMLDLP  120 (259)
Q Consensus        60 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~~----------~~v~~~~~d~~~~~  120 (259)
                      .+|.-+|+|. | .++..++..|. +|+++|.+++.++.+++++.       ..+.          ..+.+ ..+...  
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~--   80 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNLEE--   80 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCHHH--
Confidence            4688899996 4 56666777787 89999999999887665432       1110          01111 112111  


Q ss_pred             CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                      .  ...|+|+..-.                ++.+....++.++...++|+.+++.
T Consensus        81 ~--~~aD~Vieav~----------------e~~~~k~~v~~~l~~~~~~~~il~s  117 (295)
T PLN02545         81 L--RDADFIIEAIV----------------ESEDLKKKLFSELDRICKPSAILAS  117 (295)
T ss_pred             h--CCCCEEEEcCc----------------cCHHHHHHHHHHHHhhCCCCcEEEE
Confidence            1  34688875321                3446667888889998988876653

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=83.60  E-value=3.3  Score=37.15  Aligned_cols=47  Identities=19%  Similarity=0.297  Sum_probs=35.5

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL  102 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~  102 (259)
                      .+.++.+||-|++|..... .++..++.+|++||+|+..+...+=++.
T Consensus        32 ~i~~~d~vl~ItSaG~N~L-~yL~~~P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   32 NIGPDDRVLTITSAGCNAL-DYLLAGPKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             CCCCCCeEEEEccCCchHH-HHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence            4668899999987755444 4566777799999999988877765543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=83.60  E-value=1.9  Score=36.44  Aligned_cols=63  Identities=22%  Similarity=0.310  Sum_probs=39.7

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcC-----CC-eEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCC
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDG-----IT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL  119 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~-----~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~  119 (259)
                      +.++..++|+|||.|.++.+++...     .. .++.||-..... .+..++....- +.+.=+..|+.++
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl   85 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDL   85 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeecc
Confidence            4577899999999999999998864     23 899999755332 33333332221 1233344566554

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=83.60  E-value=3.9  Score=36.43  Aligned_cols=99  Identities=15%  Similarity=0.201  Sum_probs=58.6

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCe-EEEEc---cc----CCCcCCCC
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEA---DM----LDLPFSND  124 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~---d~----~~~~~~~~  124 (259)
                      .+.++.+||-.|+|. |..++.+++. |...+++++.++...+.+++.    +.+.+ .....   +.    ..+ ....
T Consensus       200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~~~~v~~~-~~g~  274 (384)
T cd08265         200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM----GADYVFNPTKMRDCLSGEKVMEV-TKGW  274 (384)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCCEEEcccccccccHHHHHHHh-cCCC
Confidence            456788898888765 5666656655 443799999888766555542    33221 11110   11    111 1234


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .+|+|+....                    .....+..+.+.|+++|.++.+..
T Consensus       275 gvDvvld~~g--------------------~~~~~~~~~~~~l~~~G~~v~~g~  308 (384)
T cd08265         275 GADIQVEAAG--------------------APPATIPQMEKSIAINGKIVYIGR  308 (384)
T ss_pred             CCCEEEECCC--------------------CcHHHHHHHHHHHHcCCEEEEECC
Confidence            6898885311                    112456777888999999998653

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=83.58  E-value=8.8  Score=37.45  Aligned_cols=98  Identities=18%  Similarity=0.155  Sum_probs=64.8

Q ss_pred             CcEEEEcCCC-C-cchHHHH-hcCCCeEEEeeCCHHHHHHHHHHHhhc-------C-C---------CCeEEEEcccCCC
Q 025039           60 SSVLELGCGN-S-RLSEGLY-NDGITAITCIDLSAVAVEKMQERLLLK-------G-Y---------KEVKVLEADMLDL  119 (259)
Q Consensus        60 ~~vLDiGcG~-G-~~~~~l~-~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~-~---------~~v~~~~~d~~~~  119 (259)
                      .+|.-+|+|+ | .++..++ ..|. .|+..|.+++.++.+.+++...       + +         .++++. .|... 
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~-  386 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG-  386 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH-
Confidence            5799999998 4 4455555 5577 8999999999998887654321       1 0         112221 12111 


Q ss_pred             cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          120 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       120 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                         -...|+|+-.     .           +++.+-.++++.++-++++|+.+|.-.+.+
T Consensus       387 ---~~~aDlViEa-----v-----------~E~~~~K~~v~~~le~~~~~~~ilasnTS~  427 (708)
T PRK11154        387 ---FKHADVVIEA-----V-----------FEDLALKQQMVAEVEQNCAPHTIFASNTSS  427 (708)
T ss_pred             ---hccCCEEeec-----c-----------cccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence               1357777732     2           246677889999999999999888865544

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=83.53  E-value=11  Score=30.47  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=26.5

Q ss_pred             CCCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCC
Q 025039           58 PNSSVLELGCGN-S-RLSEGLYNDGITAITCIDLS   90 (259)
Q Consensus        58 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s   90 (259)
                      ...+|+-+|||. | ..+..|+..|..+++.+|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            357899999997 4 46667788888789999977

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK08265 short chain dehydrogenase; Provisional

Probab=83.52  E-value=15  Score=30.57  Aligned_cols=72  Identities=15%  Similarity=0.269  Sum_probs=44.7

Q ss_pred             CCCcEEEEcCCCC---cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039           58 PNSSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~  124 (259)
                      .++++|-.|++.|   .++..+++.|. +|+.++.++..++...+..   + ..+.++..|+.+..     +     ..+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   79 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---G-ERARFIATDITDDAAIERAVATVVARFG   79 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            3567888887554   24445566687 8999999876555444332   2 24677788887632     0     113


Q ss_pred             ceeEEEecce
Q 025039          125 CFDVVIEKAT  134 (259)
Q Consensus       125 ~fD~V~~~~~  134 (259)
                      ..|+++.+..
T Consensus        80 ~id~lv~~ag   89 (261)
T PRK08265         80 RVDILVNLAC   89 (261)
T ss_pred             CCCEEEECCC
Confidence            5788886643

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=83.45  E-value=3.8  Score=32.52  Aligned_cols=92  Identities=23%  Similarity=0.265  Sum_probs=54.1

Q ss_pred             CCC-cEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCC---CCeEEEEcccCCCc---------CCC
Q 025039           58 PNS-SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY---KEVKVLEADMLDLP---------FSN  123 (259)
Q Consensus        58 ~~~-~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~---------~~~  123 (259)
                      ++. .|+.+|||-=.....+...... +++-+|. |++++.-++.+...+.   .+.+++..|+.+..         +..
T Consensus        77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~  155 (183)
T PF04072_consen   77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDP  155 (183)
T ss_dssp             TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred             CCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCC
Confidence            444 8999999987777777765432 6666665 5566666665554421   12456888887521         223


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHH
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGV  163 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  163 (259)
                      +..-++++-+++.++             ..+...++++.+
T Consensus       156 ~~ptl~i~Egvl~Yl-------------~~~~~~~ll~~i  182 (183)
T PF04072_consen  156 DRPTLFIAEGVLMYL-------------SPEQVDALLRAI  182 (183)
T ss_dssp             TSEEEEEEESSGGGS--------------HHHHHHHHHHH
T ss_pred             CCCeEEEEcchhhcC-------------CHHHHHHHHHHh
Confidence            455677888888877             556667777654

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PRK07576 short chain dehydrogenase; Provisional

Probab=83.37  E-value=17  Score=30.32  Aligned_cols=74  Identities=20%  Similarity=0.263  Sum_probs=45.3

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~  124 (259)
                      ++.++|-.|++.|.   ++..+++.|. +|++++.++..++...+.+...+ ..+.+...|+.+..     +     ..+
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~~~~   85 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAG-PEGLGVSADVRDYAAVEAAFAQIADEFG   85 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhC-CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46688888864432   3344555676 89999998877666555444333 24566777876521     0     123


Q ss_pred             ceeEEEecc
Q 025039          125 CFDVVIEKA  133 (259)
Q Consensus       125 ~fD~V~~~~  133 (259)
                      .+|+++.+.
T Consensus        86 ~iD~vi~~a   94 (264)
T PRK07576         86 PIDVLVSGA   94 (264)
T ss_pred             CCCEEEECC
Confidence            579988654

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=83.11  E-value=3  Score=31.85  Aligned_cols=41  Identities=15%  Similarity=0.237  Sum_probs=26.5

Q ss_pred             EEcCCCC--cchHHHH--hcCCC-eEEEeeCCHHHHHHHHHH--Hhhc
Q 025039           64 ELGCGNS--RLSEGLY--NDGIT-AITCIDLSAVAVEKMQER--LLLK  104 (259)
Q Consensus        64 DiGcG~G--~~~~~l~--~~~~~-~v~~vD~s~~~~~~a~~~--~~~~  104 (259)
                      |+|++.|  .....+.  ..++. +++++|+++..++..+++  +...
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            8999999  6555553  34444 899999999999999988  4443

; PDB: 2PY6_A.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.07  E-value=8.1  Score=33.35  Aligned_cols=40  Identities=20%  Similarity=0.355  Sum_probs=31.8

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHH
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQER  100 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~  100 (259)
                      .+|.-+|+|.  +.++..++..|. +|+++|.+++.++.+++.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~   46 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGV   46 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence            4688899997  456666777777 899999999998888764

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=82.97  E-value=1.9  Score=32.11  Aligned_cols=100  Identities=12%  Similarity=0.234  Sum_probs=53.4

Q ss_pred             HHHhhcccCCCCCcEEEEcCCC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC-CCc
Q 025039           48 FRHLVQPHIKPNSSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS-NDC  125 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~  125 (259)
                      +...+.... +..+|+|+|-|. -..+..|.+.|. .|+++|+.+.       ++.    ..+.+..-|+++.... =..
T Consensus         4 ~a~~ia~~~-~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~-------~a~----~g~~~v~DDif~P~l~iY~~   70 (127)
T PF03686_consen    4 FAEYIARLN-NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR-------KAP----EGVNFVVDDIFNPNLEIYEG   70 (127)
T ss_dssp             HHHHHHHHS--SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HHHHTT
T ss_pred             HHHHHHHhC-CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc-------ccc----cCcceeeecccCCCHHHhcC
Confidence            344444333 345999999998 567788888898 9999999986       111    2467778888873311 136


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .|+|++..+                  ..+++..+-++++.+  |.-+++..++.
T Consensus        71 a~lIYSiRP------------------P~El~~~il~lA~~v--~adlii~pL~~  105 (127)
T PF03686_consen   71 ADLIYSIRP------------------PPELQPPILELAKKV--GADLIIRPLGG  105 (127)
T ss_dssp             EEEEEEES--------------------TTSHHHHHHHHHHH--T-EEEEE-BTT
T ss_pred             CcEEEEeCC------------------ChHHhHHHHHHHHHh--CCCEEEECCCC
Confidence            899997432                  234445555555443  46677666554

; PDB: 2K4M_A.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=82.82  E-value=4.2  Score=36.95  Aligned_cols=37  Identities=14%  Similarity=0.265  Sum_probs=29.3

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHH
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKM   97 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a   97 (259)
                      .+|.-+|.|.  +.++..|++.|. +|+++|.++..++..
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l   42 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTI   42 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence            4688899987  345666777887 899999999988864

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=82.66  E-value=6.1  Score=33.02  Aligned_cols=73  Identities=29%  Similarity=0.368  Sum_probs=43.9

Q ss_pred             CCCcEEEEcCCC-CcchH-HHHhcCCCeEEEeeCC-------------------HHHHHHHHHHHhhcCCCCeEEEEccc
Q 025039           58 PNSSVLELGCGN-SRLSE-GLYNDGITAITCIDLS-------------------AVAVEKMQERLLLKGYKEVKVLEADM  116 (259)
Q Consensus        58 ~~~~vLDiGcG~-G~~~~-~l~~~~~~~v~~vD~s-------------------~~~~~~a~~~~~~~~~~~v~~~~~d~  116 (259)
                      +..+|+-+|+|. |..+. .|++.|..+++.+|.+                   +.-++.++++++..+ |.+++...+.
T Consensus        29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~In-P~c~V~~~~~  107 (263)
T COG1179          29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQIN-PECEVTAIND  107 (263)
T ss_pred             hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhC-CCceEeehHh
Confidence            356899999987 66555 6677788789999844                   233455666665544 4455544332


Q ss_pred             C-CC----cCCCCceeEEEe
Q 025039          117 L-DL----PFSNDCFDVVIE  131 (259)
Q Consensus       117 ~-~~----~~~~~~fD~V~~  131 (259)
                      + ..    .+-...||.|+.
T Consensus       108 f~t~en~~~~~~~~~DyvID  127 (263)
T COG1179         108 FITEENLEDLLSKGFDYVID  127 (263)
T ss_pred             hhCHhHHHHHhcCCCCEEEE
Confidence            1 11    122347898884

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=82.65  E-value=8.7  Score=36.28  Aligned_cols=64  Identities=22%  Similarity=0.374  Sum_probs=45.1

Q ss_pred             CcEEEEcCCC-CcchH-HHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEe
Q 025039           60 SSVLELGCGN-SRLSE-GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE  131 (259)
Q Consensus        60 ~~vLDiGcG~-G~~~~-~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~  131 (259)
                      .+|+-+|||. |.... .+.+.|. +++.+|.+++.++.+++.       +...+.+|..+..    ..-+.+|.+++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~-------g~~~i~GD~~~~~~L~~a~i~~a~~viv  487 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRER-------GIRAVLGNAANEEIMQLAHLDCARWLLL  487 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHC-------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence            6788888887 55433 4444566 899999999988888642       4678899988732    22346786654

>PRK06701 short chain dehydrogenase; Provisional

Probab=82.62  E-value=16  Score=31.10  Aligned_cols=115  Identities=14%  Similarity=0.174  Sum_probs=60.5

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCH-HHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSA-VAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~  123 (259)
                      +++++|-.|++.|.   ++..+++.|. +|+.++.++ ...+.....+...+ .++.++..|+.+..     +     ..
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~i~~~~  122 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFCKDAVEETVREL  122 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35688888876643   4455666777 788887764 33333333333333 24677788876522     1     01


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCch--------hHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPE--------TVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +.+|+++.+..........   .....+        +......+++.+.+.++++|.++++.
T Consensus       123 ~~iD~lI~~Ag~~~~~~~~---~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is  181 (290)
T PRK06701        123 GRLDILVNNAAFQYPQQSL---EDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG  181 (290)
T ss_pred             CCCCEEEECCcccCCCCCc---ccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            3578887654321110000   000000        11223345666677777788877754

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=82.37  E-value=19  Score=32.73  Aligned_cols=68  Identities=26%  Similarity=0.320  Sum_probs=45.6

Q ss_pred             CCCcEEEEcCCC-Ccc-hHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEe
Q 025039           58 PNSSVLELGCGN-SRL-SEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE  131 (259)
Q Consensus        58 ~~~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~  131 (259)
                      +..+|+-+|+|. |.. +..|.+.|. .++.+|.+++.++.+++..     .++.++.+|..+..    ..-..+|.|++
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~L~~~~~~~a~~vi~  303 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEEL-----PNTLVLHGDGTDQELLEEEGIDEADAFIA  303 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHC-----CCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence            457899999976 433 333334466 8999999999888777653     24677888886532    22346788775

>PLN02702 L-idonate 5-dehydrogenase

Probab=82.36  E-value=5.5  Score=35.06  Aligned_cols=99  Identities=16%  Similarity=0.240  Sum_probs=58.4

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE---cccCC----Cc-CCCC
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE---ADMLD----LP-FSND  124 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~~----~~-~~~~  124 (259)
                      .+.++.+||-.|+|. |..+..+++. |...+++++.++...+.+++.    +.+.+....   .+..+    +. ....
T Consensus       178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (364)
T PLN02702        178 NIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL----GADEIVLVSTNIEDVESEVEEIQKAMGG  253 (364)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEecCcccccHHHHHHHHhhhcCC
Confidence            345778899998764 6666666654 544688999988777766542    322221111   11111    10 1124


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .+|+|+....                 .    ...+..+.+.|+++|.++.+..
T Consensus       254 ~~d~vid~~g-----------------~----~~~~~~~~~~l~~~G~~v~~g~  286 (364)
T PLN02702        254 GIDVSFDCVG-----------------F----NKTMSTALEATRAGGKVCLVGM  286 (364)
T ss_pred             CCCEEEECCC-----------------C----HHHHHHHHHHHhcCCEEEEEcc
Confidence            5888875211                 0    1357888889999999887653

>PLN02494 adenosylhomocysteinase

Probab=82.36  E-value=4.6  Score=37.18  Aligned_cols=90  Identities=12%  Similarity=0.237  Sum_probs=55.0

Q ss_pred             CCCCcEEEEcCCC-CcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      -.+++|+-+|+|. |......++ .|. +|+++|.++.....+...    ++   .+.  ++.+. .  ...|+|++...
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~----G~---~vv--~leEa-l--~~ADVVI~tTG  318 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALME----GY---QVL--TLEDV-V--SEADIFVTTTG  318 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhc----CC---eec--cHHHH-H--hhCCEEEECCC
Confidence            3589999999998 655554444 355 899999988643333221    22   221  22221 1  24798886211


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                                          ...-+.......||+||+++.+...
T Consensus       319 --------------------t~~vI~~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        319 --------------------NKDIIMVDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             --------------------CccchHHHHHhcCCCCCEEEEcCCC
Confidence                                1112347788899999999987653

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=82.22  E-value=4.9  Score=33.20  Aligned_cols=64  Identities=23%  Similarity=0.352  Sum_probs=44.7

Q ss_pred             cEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHH-HHhhcCCCCeEEEEcccCCCc----CCCCceeEEEe
Q 025039           61 SVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQE-RLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE  131 (259)
Q Consensus        61 ~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~  131 (259)
                      +++-+|||. | .++..|.+.|. .|+.+|.+++.++.... ..      ....+++|..+..    ..-..+|++++
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~------~~~~v~gd~t~~~~L~~agi~~aD~vva   72 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADEL------DTHVVIGDATDEDVLEEAGIDDADAVVA   72 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhc------ceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence            578899997 4 45566677777 89999999988777333 21      4677888887632    23356888875

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=81.67  E-value=3.2  Score=36.08  Aligned_cols=96  Identities=20%  Similarity=0.288  Sum_probs=57.2

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc---cCCC-c-CCCCcee
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD---MLDL-P-FSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d---~~~~-~-~~~~~fD  127 (259)
                      .+.++.+||..|+|. |..+..+++. |...+++++-++...+.+++.    +..  .++...   ...+ . .....+|
T Consensus       156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~----g~~--~~~~~~~~~~~~~~~~~~~~~~d  229 (343)
T cd08236         156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL----GAD--DTINPKEEDVEKVRELTEGRGAD  229 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCC--EEecCccccHHHHHHHhCCCCCC
Confidence            345778899998765 6666666665 442399998888777666432    321  111111   1111 1 1223589


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +++....                     ....+..+.+.|+++|.++.+.
T Consensus       230 ~vld~~g---------------------~~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         230 LVIEAAG---------------------SPATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             EEEECCC---------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence            9885310                     1245677889999999988765

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PRK08507 prephenate dehydrogenase; Validated

Probab=81.15  E-value=6.4  Score=33.39  Aligned_cols=84  Identities=20%  Similarity=0.281  Sum_probs=51.7

Q ss_pred             cEEEEcCCC--CcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           61 SVLELGCGN--SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        61 ~vLDiGcG~--G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      +|.-+|+|.  |.++..+.+.|.. +++++|.++..++.+.+    .+.  +.. ..+..+.  .  ..|+|+..-    
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~--~~~-~~~~~~~--~--~aD~Vilav----   66 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGL--VDE-IVSFEEL--K--KCDVIFLAI----   66 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCC--Ccc-cCCHHHH--h--cCCEEEEeC----
Confidence            467788887  4566777777754 79999999987776643    232  111 1122121  1  278887532    


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                                    ......+++.++.. ++++..++
T Consensus        67 --------------p~~~~~~~~~~l~~-l~~~~iv~   88 (275)
T PRK08507         67 --------------PVDAIIEILPKLLD-IKENTTII   88 (275)
T ss_pred             --------------cHHHHHHHHHHHhc-cCCCCEEE
Confidence                          22455677888888 88777554

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=81.12  E-value=4.4  Score=35.25  Aligned_cols=97  Identities=25%  Similarity=0.318  Sum_probs=56.8

Q ss_pred             CCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEccc----CCCcCCCCceeE
Q 025039           56 IKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADM----LDLPFSNDCFDV  128 (259)
Q Consensus        56 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~----~~~~~~~~~fD~  128 (259)
                      +.++.+||-.|+|. |..+..+++. |..++++++.++.....+++.    +.+. +.....+.    ... .....+|+
T Consensus       164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~i~~~-~~~~~~d~  238 (345)
T cd08286         164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL----GATHTVNSAKGDAIEQVLEL-TDGRGVDV  238 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCceeccccccHHHHHHHH-hCCCCCCE
Confidence            45678888888754 5555555554 524788899888776666542    3222 12111111    111 12346898


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |+....                     ....+..+.+.|+++|.++.+..
T Consensus       239 vld~~g---------------------~~~~~~~~~~~l~~~g~~v~~g~  267 (345)
T cd08286         239 VIEAVG---------------------IPATFELCQELVAPGGHIANVGV  267 (345)
T ss_pred             EEECCC---------------------CHHHHHHHHHhccCCcEEEEecc
Confidence            874210                     02356777899999999987643

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=80.88  E-value=5  Score=33.93  Aligned_cols=96  Identities=21%  Similarity=0.216  Sum_probs=62.5

Q ss_pred             CCCCCcEEEEcC--CCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC--cC-CCCceeEE
Q 025039           56 IKPNSSVLELGC--GNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL--PF-SNDCFDVV  129 (259)
Q Consensus        56 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~--~~-~~~~fD~V  129 (259)
                      +++|..||--.+  |-|.++..|++.....+++.-.+.+-.+.|+++    |... |.....|+.+-  .+ ....+|++
T Consensus       144 vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiTngKGVd~v  219 (336)
T KOG1197|consen  144 VKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKITNGKGVDAV  219 (336)
T ss_pred             CCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhccCCCCceee
Confidence            568888876544  447777788777554788887777777777765    4322 45555565431  11 13468888


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +.+-.                      ...+.....+|||+|+++-..
T Consensus       220 yDsvG----------------------~dt~~~sl~~Lk~~G~mVSfG  245 (336)
T KOG1197|consen  220 YDSVG----------------------KDTFAKSLAALKPMGKMVSFG  245 (336)
T ss_pred             ecccc----------------------chhhHHHHHHhccCceEEEec
Confidence            75322                      245677888999999998643

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=80.78  E-value=30  Score=29.70  Aligned_cols=113  Identities=21%  Similarity=0.238  Sum_probs=73.0

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCc----------CCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP----------FSN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~----------~~~  123 (259)
                      .++.||--||..|.   ++..++++|. +++.+--....++...+.++..+-.+ +.++..|+.+..          ..-
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            46789999998874   6667777887 77777778888888866665555445 888889988742          134


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHH-----------HHHHHHHhcccCC--cEEEEEec
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVM-----------AMLEGVHRVLKPD--GLFISVSF  178 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~Lkpg--G~l~~~~~  178 (259)
                      +..|+.+.|..+...  .   .+..  .+..+.+           .+.+.+...|+..  |.++++..
T Consensus        90 g~vDvLVNNAG~~~~--~---~~~~--~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisS  150 (282)
T KOG1205|consen   90 GRVDVLVNNAGISLV--G---FLED--TDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISS  150 (282)
T ss_pred             CCCCEEEecCccccc--c---cccc--CcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEec
Confidence            679999988655331  1   0110  1222333           3455566666543  88888654

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=80.76  E-value=3.1  Score=31.28  Aligned_cols=73  Identities=21%  Similarity=0.254  Sum_probs=45.9

Q ss_pred             CCCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           58 PNSSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        58 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      ++.++|-+|+|. | ..+..|+..|..+++.+.-+.+..+...+.+..   ..+.+...  .++......+|+|+...+.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~---~~~~~~~~--~~~~~~~~~~DivI~aT~~   85 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG---VNIEAIPL--EDLEEALQEADIVINATPS   85 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG---CSEEEEEG--GGHCHHHHTESEEEE-SST
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc---cccceeeH--HHHHHHHhhCCeEEEecCC
Confidence            578999999986 3 344466667886799999988766666555521   23444433  3332112469999975443

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=80.36  E-value=4.2  Score=36.50  Aligned_cols=71  Identities=24%  Similarity=0.304  Sum_probs=48.2

Q ss_pred             CcEEEEcCCC-CcchHHH-HhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEEecce
Q 025039           60 SSVLELGCGN-SRLSEGL-YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKAT  134 (259)
Q Consensus        60 ~~vLDiGcG~-G~~~~~l-~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~  134 (259)
                      .+||-+|||. |....+. ++.+..+|+..|-+...++.+.....    .+++....|+.+.+   .--..+|+|+...+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAADVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence            4799999987 6655554 55563499999999888877766532    25777777877642   01134598886543

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=80.35  E-value=7.4  Score=33.74  Aligned_cols=100  Identities=14%  Similarity=0.103  Sum_probs=53.0

Q ss_pred             CCcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHH-hhcCC-CCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           59 NSSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERL-LLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        59 ~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      ..+|+-+|+|.  |.++..|++.|. +|+.+.-++.  +..+++- ..... .+..+....+...+-....+|+|+..--
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK   81 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLK   81 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEec
Confidence            35799999997  557777777777 7777776642  2222210 00000 0011100001111111246898875321


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .                  .+..++++.+..++++++.++....+
T Consensus        82 ~------------------~~~~~~~~~l~~~~~~~~~iv~lqNG  108 (313)
T PRK06249         82 T------------------TANALLAPLIPQVAAPDAKVLLLQNG  108 (313)
T ss_pred             C------------------CChHhHHHHHhhhcCCCCEEEEecCC
Confidence            1                  12356788888889999987765433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	259
2pxx_A	215	Human Putative Methyltransferase Mgc2408 Length = 2		2e-36
3mgg_A	276	Crystal Structure Of Methyl Transferase From Methan		2e-06
3l8d_A	242	Crystal Structure Of Methyltransferase From Bacillu		1e-05
3cc8_A	230	Crystal Structure Of A Putative Methyltransferase (		5e-04
3sm3_A	235	Crystal Structure Of Sam-Dependent Methyltransferas		6e-04

>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408 Length = 215

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 112/209 (53%), Gaps = 11/209 (5%)
Query: 21  SAYLDPHYWDERF---SDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLY 77
           S Y +  YWD+R+   +D   Y+W  D+S FR L++P ++P   +L LGCGNS LS  L+
Sbjct: 2   SGYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELF 61
Query: 78  NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD---LPFSNDCFDVVIEKAT 134
             G   +T +D S+V V  MQ       Y  V  L  + +D   L F +  FDVV+EK T
Sbjct: 62  LGGFPNVTSVDYSSVVVAAMQ-----ACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGT 116
Query: 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFT 194
           ++ L     DPW    E V  V  +L  V RVL P G FIS++   PHFR   +    + 
Sbjct: 117 LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYG 176
Query: 195 WSVEWITFGDGFHYFFYILRKGKRSSADE 223
           WS+   T+G GFH+  Y++ KG + S  +
Sbjct: 177 WSLRHATYGSGFHFHLYLMHKGGKLSVAQ 205

>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 58  PNSSVLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM 116
           P + VLE GCG    +  L  +   A IT ID+S  ++EK +E     G K VK L+A++
Sbjct: 37  PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANI 96
Query: 117 LDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 171
             LPF +  FD +     +E L           PE        L+ + +VLKP G
Sbjct: 97  FSLPFEDSSFDHIFVCFVLEHL---------QSPEEA------LKSLKKVLKPGG 136

>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 19/119 (15%)
Query: 53  QPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVL 112
           + ++K  + VL++GCG+   +  L   G  A+  +D+S V ++K +ER       ++  +
Sbjct: 48  EQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVG-VDISEVXIQKGKER---GEGPDLSFI 103
Query: 113 EADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 171
           + D+  LPF N+ F+ +    ++E         W  +P      +  L  + RVLK DG
Sbjct: 104 KGDLSSLPFENEQFEAIXAINSLE---------WTEEP------LRALNEIKRVLKSDG 147

>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A Resolution Length = 230

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 46  SHFRHLVQP----HIKPN-SSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQER 100
            H+ + V P    HIK     VL++GC +  L   +  +G T ++ I+    A E+ +E+
Sbjct: 15  GHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEK 73
Query: 101 LLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAML 160
           L       V + + +  D P+  + FD VI    +E LF    DPW           A++
Sbjct: 74  L-----DHVVLGDIETXDXPYEEEQFDCVIFGDVLEHLF----DPW-----------AVI 113
Query: 161 EGVHRVLKPDGLFIS 175
           E V   +K +G+ ++
Sbjct: 114 EKVKPYIKQNGVILA 128

>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases Q8puk2_metma From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target Mar262 Length = 235

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 22/137 (16%)
Query: 51  LVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL-------L 103
           ++  +++ +  +L++GCG+ ++S  L + G + +T ID+++ A+   +            
Sbjct: 23  IIHNYLQEDDEILDIGCGSGKISLELASKGYS-VTGIDINSEAIRLAETAARSPGLNQKT 81
Query: 104 KGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGV 163
            G  E KV  A    L F +  FD  + +A +  +         P P+  +++   ++ V
Sbjct: 82  GGKAEFKVENAS--SLSFHDSSFDFAVMQAFLTSV---------PDPKERSRI---IKEV 127
Query: 164 HRVLKPDGLFISVSFGQ 180
            RVLKP      V FGQ
Sbjct: 128 FRVLKPGAYLYLVEFGQ 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	4e-72
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	7e-22
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	9e-20
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	1e-18
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	3e-18
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	5e-18
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	6e-18
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	2e-17
3cc8_A	230	Putative methyltransferase; structural genomics, j	3e-17
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	7e-17
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	7e-17
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	1e-16
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	2e-16
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	3e-16
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	3e-16
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	5e-16
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	6e-16
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	1e-15
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	1e-15
3ege_A	261	Putative methyltransferase from antibiotic biosyn	6e-15
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	7e-15
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	1e-14
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	1e-14
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	1e-14
3ocj_A	305	Putative exported protein; structural genomics, PS	3e-14
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	4e-14
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	5e-14
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	5e-14
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	5e-14
3f4k_A	257	Putative methyltransferase; structural genomics, P	6e-14
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	8e-14
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	1e-13
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-13
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	2e-13
3lcc_A	235	Putative methyl chloride transferase; halide methy	2e-13
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	3e-13
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	5e-13
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	7e-13
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	7e-13
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	1e-12
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	1e-12
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	1e-12
1xxl_A	239	YCGJ protein; structural genomics, protein structu	3e-12
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	5e-12
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	7e-12
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	8e-12
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	9e-12
3i9f_A	170	Putative type 11 methyltransferase; structural gen	1e-11
2p7i_A	250	Hypothetical protein; putative methyltransferase,	1e-11
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	1e-11
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	2e-11
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	4e-11
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	2e-10
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	4e-10
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	5e-10
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	6e-10
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	1e-09
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	1e-09
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-09
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	2e-09
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	3e-09
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	1e-08
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	5e-08
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	9e-08
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	5e-07
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	2e-06
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	7e-06
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	1e-05
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	1e-05
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	2e-05
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	5e-05
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	4e-04
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	6e-04

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score =  219 bits (558), Expect = 4e-72
 Identities = 76/206 (36%), Positives = 110/206 (53%), Gaps = 5/206 (2%)

Query: 21  SAYLDPHYWDERFS---DEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLY 77
           S Y +  YWD+R+    D   Y+W  D+S FR L++P ++P   +L LGCGNS LS  L+
Sbjct: 2   SGYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELF 61

Query: 78  NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137
             G   +T +D S+V V  MQ         +++    D+  L F +  FDVV+EK T++ 
Sbjct: 62  LGGFPNVTSVDYSSVVVAAMQACY--AHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119

Query: 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSV 197
           L     DPW    E V  V  +L  V RVL P G FIS++   PHFR   +    + WS+
Sbjct: 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSL 179

Query: 198 EWITFGDGFHYFFYILRKGKRSSADE 223
              T+G GFH+  Y++ KG + S  +
Sbjct: 180 RHATYGSGFHFHLYLMHKGGKLSVAQ 205

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 89.2 bits (221), Expect = 7e-22
 Identities = 26/178 (14%), Positives = 62/178 (34%), Gaps = 15/178 (8%)

Query: 56  IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD 115
              + +VL+ G G       ++ +       I++S + ++K +       +K + + + D
Sbjct: 21  SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK-LNISKGD 79

Query: 116 MLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175
           +  LPF ++    V    +   +F         + +        ++ + RVLKP GL   
Sbjct: 80  IRKLPFKDESMSFVY---SYGTIF------HMRKNDVK----EAIDEIKRVLKPGGLACI 126

Query: 176 VSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPL 233
                   R               +  G+   + +  L +  +   D ++    D+ +
Sbjct: 127 NFLTTKDERYNKGE-KIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRVV 183

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 84.2 bits (208), Expect = 9e-20
 Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 18/178 (10%)

Query: 27  HYWD--ERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAI 84
            Y+     ++D    E+         L+  ++K    VL+L CG    S  L + G   +
Sbjct: 5   EYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFE-V 63

Query: 85  TCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGD 144
             +D+S   + K +E    +    V+ +  D   L F +  FD VI    ++ +      
Sbjct: 64  VGVDISEDMIRKAREYAKSRESN-VEFIVGDARKLSFEDKTFDYVI---FIDSIV----- 114

Query: 145 PWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITF 202
                 E    +  + + V RVLKP G FI + F       P            WI+ 
Sbjct: 115 -HFEPLE----LNQVFKEVRRVLKPSGKFI-MYFTDLRELLPRLKESLVVGQKYWISK 166

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 80.6 bits (199), Expect = 1e-18
 Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 21/155 (13%)

Query: 28  YWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCI 87
            + +R+ +        D      L+       + +L+ GCG  R+   L   G   +   
Sbjct: 18  NYAQRWRNLAAA--GNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQGHD-VLGT 74

Query: 88  DLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWN 147
           DL  + ++  ++      + E + +  D+     S   FD+++   +   +         
Sbjct: 75  DLDPILIDYAKQD-----FPEARWVVGDLSVDQISETDFDLIV---SAGNVM------GF 120

Query: 148 PQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182
              +        L  +HR L  DG  + + FG   
Sbjct: 121 LAEDGREPA---LANIHRALGADGRAV-IGFGAGR 151

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 80.3 bits (198), Expect = 3e-18
 Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 23/163 (14%)

Query: 27  HYWDER---FSDEEHYEWLKD-YSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGIT 82
             WD     ++      W     S      + ++K  + VL++GCG+   +  L   G  
Sbjct: 18  KKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYK 77

Query: 83  AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNS 142
               +D+S V ++K +ER       ++  ++ D+  LPF N+ F+ ++    +  L    
Sbjct: 78  -AVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFENEQFEAIM---AINSLE--- 127

Query: 143 GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRR 185
              W  +P         L  + RVLK DG       G     R
Sbjct: 128 ---WTEEPLRA------LNEIKRVLKSDGYACIAILGPTAKPR 161

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 80.0 bits (197), Expect = 5e-18
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 28/193 (14%)

Query: 19  TTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQ-PHIKPNSSVLELGCGNSRLSEGLY 77
             + Y D H++++        E LK    +  L +        +VL+LGCG         
Sbjct: 4   KENKYDDKHFFEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAA 63

Query: 78  NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137
             G   +  IDLS   + + + +        V   +  + D+    D ++VV+   +   
Sbjct: 64  EHGAKKVLGIDLSERMLTEAKRKT---TSPVVCYEQKAIEDIAIEPDAYNVVL---SSLA 117

Query: 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSV 197
           L       +    + +       + V+  LK  G FI   F   H   P F A       
Sbjct: 118 L------HYIASFDDI------CKKVYINLKSSGSFI---FSVEH---PVFTADGRQD-- 157

Query: 198 EWITFGDGFHYFF 210
            W T   G    +
Sbjct: 158 -WYTDETGNKLHW 169

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 79.4 bits (196), Expect = 6e-18
 Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 23/176 (13%)

Query: 27  HYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITC 86
           + +DE   D  + EW+         V   ++P   + ++GCG    +  L  D    +T 
Sbjct: 9   YVYDELMQDVPYPEWV-------AWVLEQVEPGKRIADIGCGTGTATLLL-ADHYE-VTG 59

Query: 87  IDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPW 146
           +DLS   +E  QE+ +      V     DM +L        + I   ++  L        
Sbjct: 60  VDLSEEMLEIAQEKAMETNRH-VDFWVQDMRELELPEPVDAITILCDSLNYL-------- 110

Query: 147 NPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITF 202
               +T   V    +   R+L   G  +      P+     FN   +    E  ++
Sbjct: 111 ----QTEADVKQTFDSAARLLTDGGKLL-FDVHSPYKMETLFNGKTYATHAEQSSY 161

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 17/182 (9%)

Query: 27  HYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITC 86
           H +D+    +  Y+   D+         +       L+L CG   L+E L          
Sbjct: 8   HIYDKLIRADVDYKKWSDF--IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKN-TWA 64

Query: 87  IDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPW 146
           +DLS   + + + +   +G K  ++   D+ +L   N  FD++              D  
Sbjct: 65  VDLSQEMLSEAENKFRSQGLK-PRLACQDISNLNI-NRKFDLIT----------CCLDST 112

Query: 147 NPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGF 206
           N        +    + V   LK  G+FI       +          F +  + + +    
Sbjct: 113 NYII-DSDDLKKYFKAVSNHLKEGGVFI-FDINSYYKLSQVLGNNDFNYDDDEVFYYWEN 170

Query: 207 HY 208
            +
Sbjct: 171 QF 172

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 77.1 bits (190), Expect = 3e-17
 Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 27/177 (15%)

Query: 38  HYEWLKDYSHFRHLVQPHIKP-NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEK 96
             +    Y+     +  HIK     VL++GC +  L   +  +G   ++ I+    A E+
Sbjct: 11  EEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENGTR-VSGIEAFPEAAEQ 69

Query: 97  MQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKV 156
            +E+L       V + + + +D+P+  + FD VI     +VL            E +   
Sbjct: 70  AKEKLD-----HVVLGDIETMDMPYEEEQFDCVI---FGDVL------------EHLFDP 109

Query: 157 MAMLEGVHRVLKPDG-LFISV-SFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFY 211
            A++E V   +K +G +  S+ +        P        W+       D  H  F+
Sbjct: 110 WAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAG---NWTYTEYGLLDKTHIRFF 163

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 75.7 bits (186), Expect = 7e-17
 Identities = 35/180 (19%), Positives = 71/180 (39%), Gaps = 33/180 (18%)

Query: 29  WDERFSDEEHY------EWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGIT 82
           WDERFS  E+       ++L   ++          P   +L L  G  R +  L + G  
Sbjct: 2   WDERFSQSEYVYGTEPNDFLVSVANQI--------PQGKILCLAEGEGRNACFLASLGYE 53

Query: 83  AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNS 142
            +T +D S+V + K ++    KG  ++  +++++ D     D ++ ++         +  
Sbjct: 54  -VTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIVADAWEGIV--------SIFC 103

Query: 143 GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF--GQPHFRRPFFNAPQFTWSVEWI 200
             P + + +       +   V++ LKP G+FI   F   Q  +             +E +
Sbjct: 104 HLPSSLRQQ-------LYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETL 156

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 76.4 bits (188), Expect = 7e-17
 Identities = 37/226 (16%), Positives = 79/226 (34%), Gaps = 51/226 (22%)

Query: 24  LDPHYWDERFSD--EEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGI 81
           +   YW++          +          ++  +++ +  +L++GCG+ ++S  L + G 
Sbjct: 1   MPESYWEKVSGKNIPSSLDLYP-------IIHNYLQEDDEILDIGCGSGKISLELASKGY 53

Query: 82  TAITCIDLSAVAVEKMQERLLLKG-----YKEVKVLEADMLDLPFSNDCFDVVIEKATME 136
           + +T ID+++ A+   +      G       + +    +   L F +  FD  +      
Sbjct: 54  S-VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV---MQA 109

Query: 137 VLFVNSGDPWN-PQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTW 195
            L        + P P+  +++   ++ V RVLKP      V FGQ           +   
Sbjct: 110 FL-------TSVPDPKERSRI---IKEVFRVLKPGAYLYLVEFGQN-------WHLKLYR 152

Query: 196 SVEWITFGDGFHYFFYILRK-GKRSSADEELSQSHDKPLVPTISMF 240
                       + F I ++ G   + D E            I+  
Sbjct: 153 KRYL--------HDFPITKEEGSFLARDPE------TGETEFIAHH 184

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 74.8 bits (184), Expect = 1e-16
 Identities = 25/176 (14%), Positives = 58/176 (32%), Gaps = 28/176 (15%)

Query: 29  WDERFSDEEHYEWLKDYSHFRHLVQPHI-KPNSSVLELGCGNSRLSEGLYNDGITAITCI 87
            +         E        R L++P     +  +L++G G  R +  L + G   I  +
Sbjct: 16  AEALLGTVISAEDPD-----RVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQ-IEGL 69

Query: 88  DLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWN 147
           + +   VE  ++      +  V      + DL  S   +  ++  A   ++ +  G+   
Sbjct: 70  EPATRLVELARQT-----HPSVTFHHGTITDLSDSPKRWAGLL--AWYSLIHMGPGELP- 121

Query: 148 PQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNA--PQFTWSVEWIT 201
                       L  +   ++  G  + +SF       P ++     + W +  + 
Sbjct: 122 ----------DALVALRMAVEDGGGLL-MSFFSGPSLEPMYHPVATAYRWPLPELA 166

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 74.1 bits (182), Expect = 2e-16
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 19/160 (11%)

Query: 28  YWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCI 87
             DE +  ++ YE  + +S     V   +      L+LGCGN R S  L  +G   +   
Sbjct: 5   IRDENYFTDK-YELTRTHSEVLEAV--KVVKPGKTLDLGCGNGRNSLYLAANGYD-VDAW 60

Query: 88  DLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWN 147
           D +A+++  ++    ++    +     D+ +L F    +D ++    +  L         
Sbjct: 61  DKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDR-QYDFILSTVVLMFL--------- 110

Query: 148 PQPETVTKVMAMLEGVHRVLKPDG-LFISVSFGQPHFRRP 186
            + +T+  +   +  + R  KP G   I  +     +   
Sbjct: 111 -EAKTIPGL---IANMQRCTKPGGYNLIVAAMDTADYPCT 146

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 75.3 bits (185), Expect = 3e-16
 Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 20/157 (12%)

Query: 19  TTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYN 78
           + + Y+  +   E     E  E L+   H          P + VLE GCG    +  L  
Sbjct: 2   SLTEYVHGYSEREALRLSEQAETLEKLLHHD----TVYPPGAKVLEAGCGIGAQTVILAK 57

Query: 79  DGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137
           +   A IT ID+S  ++EK +E     G K VK L+A++  LPF +  FD +       V
Sbjct: 58  NNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIF---VCFV 114

Query: 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174
           L  +   P              L+ + +VLKP G   
Sbjct: 115 L-EHLQSP-----------EEALKSLKKVLKPGGTIT 139

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 74.4 bits (183), Expect = 3e-16
 Identities = 36/224 (16%), Positives = 72/224 (32%), Gaps = 30/224 (13%)

Query: 27  HYWDERFS---DEEHYEWLKDYSH----FRHLVQPHIKPNSSVLELGCGNSRLSEGLYND 79
           H ++   +   D  +    KDY+        LV+      SS+L++ CG     E    +
Sbjct: 2   HMYEVDHADVYDLFYLGRGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKE 61

Query: 80  GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF 139
                  ++LS   +   ++RL      +  + + DM D       F  V+  +    + 
Sbjct: 62  FGD-TAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL-GRKFSAVV--SMFSSVG 112

Query: 140 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEW 199
                      +T  ++ A +      L+P G+ +        F   F +       V  
Sbjct: 113 YL---------KTTEELGAAVASFAEHLEPGGVVV---VEPWWFPETFADGWVSADVVRR 160

Query: 200 ITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFHEE 243
              G       + +R+G  +  +   + +     V   S  H  
Sbjct: 161 --DGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHFSDVHLI 202

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 73.7 bits (181), Expect = 5e-16
 Identities = 30/187 (16%), Positives = 54/187 (28%), Gaps = 24/187 (12%)

Query: 27  HYWDE--RFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAI 84
           H +D   +  D ++ E    Y      V    K   +VLE G G   L+  L   G T +
Sbjct: 14  HTYDSFVQGEDIQYKEVFAHYEDILEDVVN--KSFGNVLEFGVGTGNLTNKLLLAGRT-V 70

Query: 85  TCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGD 144
             I+ S       +E+L     KE  + E D L         D ++              
Sbjct: 71  YGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVPTS-IDTIVSTYAFH-------- 117

Query: 145 PWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGD 204
                 E        +    ++L   G  +  +      +  +    +      +    +
Sbjct: 118 -HLTDDE----KNVAIAKYSQLLNKGGKIV-FADTIFADQDAYDKTVEAAKQRGFHQLAN 171

Query: 205 GFHYFFY 211
                +Y
Sbjct: 172 DLQTEYY 178

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 74.1 bits (182), Expect = 6e-16
 Identities = 32/166 (19%), Positives = 54/166 (32%), Gaps = 22/166 (13%)

Query: 10  SEKKTIGPPTTSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGN 69
           +E KTI     +   D     ER         LK  S        ++   S + ++GCG 
Sbjct: 3   NENKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSF-----IDNLTEKSLIADIGCGT 57

Query: 70  SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDV 128
              +  L       +T +D  +  ++         G +  V  +   M DLPF N+  D+
Sbjct: 58  GGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDL 117

Query: 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174
           +  +  +          +N   E        L    + LK  G   
Sbjct: 118 IWSEGAI----------YNIGFE------RGLNEWRKYLKKGGYLA 147

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 72.5 bits (178), Expect = 1e-15
 Identities = 37/220 (16%), Positives = 72/220 (32%), Gaps = 32/220 (14%)

Query: 18  PTTSAYLDPHYWDERFSDEEHYEWLKD---YSHFRHLVQPHI----KPNSSVLELGCGNS 70
           P T   +D  Y            W  D   +   RH     +       S+ LE+GC   
Sbjct: 4   PFTMVSVDNTYQSLERELANDDPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAG 63

Query: 71  RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVI 130
             +E L       +T ID+   A+ +  +R   K +  +     D+L    + + FD+++
Sbjct: 64  AFTEKLAPHC-KRLTVIDVMPRAIGRACQR--TKRWSHISWAATDILQFSTA-ELFDLIV 119

Query: 131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG-LFISVSFGQPHFRRPFFN 189
                EVL+      +      +      ++ + ++L P G L           R     
Sbjct: 120 ---VAEVLY------YLEDMTQMRTA---IDNMVKMLAPGGHLVFG------SARDATCR 161

Query: 190 APQFTWSVEWI--TFGDGFHYFFYILRKGKRSSADEELSQ 227
                   E +     +       +  +G+ +  D  L++
Sbjct: 162 RWGHVAGAETVITILTEALTEVERVQCQGQSADEDCLLAR 201

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 73.4 bits (180), Expect = 1e-15
 Identities = 32/226 (14%), Positives = 68/226 (30%), Gaps = 30/226 (13%)

Query: 10  SEKKTIGPPTTSAYLD-PHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCG 68
           +       P      +    +D     +   ++ ++ +    LV+ H    +S+L++ CG
Sbjct: 2   AHSSATAGPQADYSGEIAELYDLVHQGKG-KDYHREAADLAALVRRHSPKAASLLDVACG 60

Query: 69  NSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDV 128
                  L +   T +  ++LSA  +   + R       +  +   DM D       F  
Sbjct: 61  TGMHLRHLADSFGT-VEGLELSADMLAIARRRN-----PDAVLHHGDMRDFSL-GRRFSA 113

Query: 129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI------SVSFGQPH 182
           V                         ++ A LE     + PDG+ +        +F   +
Sbjct: 114 VT----------CMFSSIGHLA-GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGY 162

Query: 183 FRRPFFNAPQFTWSVEWITFGDG----FHYFFYILRKGKRSSADEE 224
                  A   T +    +  +G        + +    +  +  EE
Sbjct: 163 VAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEE 208

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 71.5 bits (175), Expect = 6e-15
 Identities = 21/164 (12%), Positives = 50/164 (30%), Gaps = 31/164 (18%)

Query: 26  PHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAIT 85
             Y   R  D      + +  +        +   S + ++G G    S  L N G+  + 
Sbjct: 10  KQYSQTRVPDIRIVNAIINLLN--------LPKGSVIADIGAGTGGYSVALANQGLF-VY 60

Query: 86  CIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDP 145
            ++ S V  ++           +V+       +L   +   D VI    +          
Sbjct: 61  AVEPSIVMRQQAVVHP------QVEWFTGYAENLALPDKSVDGVISILAIH--------- 105

Query: 146 WNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFN 189
                E         + + R+++   + + ++F     +R +  
Sbjct: 106 HFSHLE------KSFQEMQRIIRDGTIVL-LTFDIRLAQRIWLY 142

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 71.9 bits (176), Expect = 7e-15
 Identities = 28/208 (13%), Positives = 59/208 (28%), Gaps = 39/208 (18%)

Query: 27  HYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITC 86
             + +   D +     +++             +  VLEL  G  RL+    + G   +T 
Sbjct: 57  DTYRDLIQDADGTSEAREF------ATRTGPVSGPVLELAAGMGRLTFPFLDLGWE-VTA 109

Query: 87  IDLS----AVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNS 142
           ++LS    A   +++ E       +   +++ DM      +  F  V          V S
Sbjct: 110 LELSTSVLAAFRKRLAEAPADVRDR-CTLVQGDMSAFAL-DKRFGTV----------VIS 157

Query: 143 GDPWN--PQPETVTKVMAMLEGVHRVLKPDGLFI---------SVSFGQPHFRRPFFNAP 191
               N   + +       +   V   L+P G F+              +     P  +  
Sbjct: 158 SGSINELDEAD----RRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGR 213

Query: 192 QFTWSVEWITFGDGFHY-FFYILRKGKR 218
           ++   V  +   +               
Sbjct: 214 RYVLHVRHLPAEEIQEITIHPADETTDP 241

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 70.6 bits (173), Expect = 1e-14
 Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 29/182 (15%)

Query: 29  WDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCID 88
           + +     E  +   ++   R ++         +++LGCG        +  G + +  +D
Sbjct: 16  YSQLGRSIEGLDGAAEWPALRAMLPEV--GGLRIVDLGCGFGWFCRWAHEHGASYVLGLD 73

Query: 89  LSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNP 148
           LS   + + +      G   +    AD+  L    D FD+     +   L       +  
Sbjct: 74  LSEKMLARARAAGPDTG---ITYERADLDKLHLPQDSFDLAY---SSLAL------HYVE 121

Query: 149 QPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHY 208
                     +   VH+ L P G F+  S   P +  P            W    +G   
Sbjct: 122 DVA------RLFRTVHQALSPGGHFV-FSTEHPIYMAPARPG--------WAIDAEGRRT 166

Query: 209 FF 210
           + 
Sbjct: 167 WP 168

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 69.9 bits (171), Expect = 1e-14
 Identities = 32/180 (17%), Positives = 48/180 (26%), Gaps = 25/180 (13%)

Query: 29  WDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCID 88
           +D  F               R            VLEL  G    +  L       +T +D
Sbjct: 22  YDATFVPYMDSAAPAALERLRAG-----NIRGDVLELASGTGYWTRHLSGLADR-VTALD 75

Query: 89  LSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNP 148
            SA  + +        G   V+  + D+ D    +  +D V       +  V    P + 
Sbjct: 76  GSAEMIAEAGRH----GLDNVEFRQQDLFDWTP-DRQWDAVF--FAHWLAHV----PDDR 124

Query: 149 QPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHY 208
                    A  E V   + P G+         H RR               T  DG  +
Sbjct: 125 FE-------AFWESVRSAVAPGGVVE-FVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSF 176

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 70.2 bits (172), Expect = 1e-14
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 17/149 (11%)

Query: 27  HYWDERFSDE-EHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAIT 85
            Y+D  +    E  +   D+       +   +    VL+L CG    +  L   G   + 
Sbjct: 10  EYYDTIYRRRIERVKAEIDFVE-EIFKEDAKREVRRVLDLACGTGIPTLELAERGYE-VV 67

Query: 86  CIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDP 145
            +DL    +   + +   +  K ++ L+ D+L++ F  + FD V                
Sbjct: 68  GLDLHEEMLRVARRKAKERNLK-IEFLQGDVLEIAF-KNEFDAVT----------MFFST 115

Query: 146 WNPQPETVTKVMAMLEGVHRVLKPDGLFI 174
                     +  +   V   LKP G+FI
Sbjct: 116 IMYF--DEEDLRKLFSKVAEALKPGGVFI 142

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 70.1 bits (171), Expect = 3e-14
 Identities = 29/178 (16%), Positives = 53/178 (29%), Gaps = 21/178 (11%)

Query: 45  YSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITA--ITCIDLSAVAVEKMQERLL 102
           + HFR  +Q H++P   V  + CG       L         +  ID    A++       
Sbjct: 105 HGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAA 164

Query: 103 LKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLE 161
                  + +   D   L    + +D++    T   L +   D          +V  +  
Sbjct: 165 GHALAGQITLHRQDAWKLDTR-EGYDLL----TSNGLNIYEPDDA--------RVTELYR 211

Query: 162 GVHRVLKPDGLFISVSFGQPHFRRP-----FFNAPQFTWSVEWITFGDGFHYFFYILR 214
              + LKP G  ++     P    P               ++ + F       +  LR
Sbjct: 212 RFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALR 269

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 68.7 bits (168), Expect = 4e-14
 Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 27/134 (20%)

Query: 55  HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA 114
            + P    +E+G G  R +  L          ++ S    E  ++R        V VL+ 
Sbjct: 44  CLLPEGRGVEIGVGTGRFAVPLKI-----KIGVEPSERMAEIARKR-------GVFVLKG 91

Query: 115 DMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174
              +LP  ++ FD  +    +  +              V      L+  +R+LK  G  I
Sbjct: 92  TAENLPLKDESFDFAL---MVTTI------------CFVDDPERALKEAYRILKKGGYLI 136

Query: 175 SVSFGQPHFRRPFF 188
                +  F    +
Sbjct: 137 VGIVDRESFLGREY 150

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 68.0 bits (166), Expect = 5e-14
 Identities = 39/188 (20%), Positives = 59/188 (31%), Gaps = 28/188 (14%)

Query: 17  PPTTSAYLDP--HYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSE 74
           P  T A+ D    ++         Y   +  S         +   + +LELGCG    +E
Sbjct: 3   PDMTQAFDDDTLRFYRGNA---TAYAERQPRSATLTKFLGELPAGAKILELGCGAGYQAE 59

Query: 75  GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 134
            +   G       D S     +   RL         V       L    D +D V   A 
Sbjct: 60  AMLAAGFDV-DATDGSPELAAEASRRL------GRPVRTMLFHQLDA-IDAYDAVWAHAC 111

Query: 135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFT 194
           +            P+ E    +  +L+ + R LKP GLF   S+           A  + 
Sbjct: 112 L---------LHVPRDE----LADVLKLIWRALKPGGLFY-ASYKSGEGEGRDKLARYYN 157

Query: 195 -WSVEWIT 201
             S EW+ 
Sbjct: 158 YPSEEWLR 165

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 69.3 bits (169), Expect = 5e-14
 Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 20/163 (12%)

Query: 24  LDPHYWDERFS---DEEHYEWLKDYSHFRHLVQPHIK--PNSSVLELGCGNSRLSEGLYN 78
           +   Y D   +        +     + ++  +   ++      VL++ CG    S  L  
Sbjct: 18  IPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVE 77

Query: 79  DGITAITCIDLS----AVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIE 131
           +G + +T +D S      A+++   R     + +  + EA+ L L     + D FD VI 
Sbjct: 78  EGFS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI- 135

Query: 132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174
                    NS           ++    L+ +  +++P GL +
Sbjct: 136 ------CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 69.1 bits (169), Expect = 5e-14
 Identities = 27/175 (15%), Positives = 64/175 (36%), Gaps = 24/175 (13%)

Query: 28  YWDERFSDEEHYEWLKDYSHF---RHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAI 84
            + E    +E  E       +      +   ++  +  L+LG G    +  L      +I
Sbjct: 49  LYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSI 108

Query: 85  TCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSG 143
            C++++ V  ++ +E     G  + + V     L++P  ++ +D +    + +  F++S 
Sbjct: 109 DCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIW---SQDA-FLHSP 164

Query: 144 DPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ-----PHFRRPFFNAPQF 193
           D            + + +   RVLKP G+       +         +P  +  + 
Sbjct: 165 DK-----------LKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL 208

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 68.7 bits (168), Expect = 6e-14
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 17/122 (13%)

Query: 54  PHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVL 112
             +  ++ + ++GCG    +  L +     IT IDL    +E   E  +     + VK +
Sbjct: 42  NELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGI 101

Query: 113 EADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL 172
              M +LPF N+  D++      E    N G                +    + LK  G 
Sbjct: 102 TGSMDNLPFQNEELDLIW----SEGAIYNIGFE------------RGMNEWSKYLKKGGF 145

Query: 173 FI 174
             
Sbjct: 146 IA 147

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 68.3 bits (167), Expect = 8e-14
 Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 37/182 (20%)

Query: 26  PHY--WDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITA 83
             Y    E    + ++  +  +      ++ ++K    VL+LG G  + S  L   G   
Sbjct: 26  RAYDSMYETPKWKLYHRLIGSF------LEEYLKNPCRVLDLGGGTGKWSLFLQERGFE- 78

Query: 84  ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSG 143
           +  +D S   +E  +E+          V+EA   DLPF +  F+ V+            G
Sbjct: 79  VVLVDPSKEMLEVAREKG------VKNVVEAKAEDLPFPSGAFEAVL----------ALG 122

Query: 144 DPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH-------FRRPFFNAPQFTWS 196
           D  +     V         + RVL PDGL I  +    +        +  +    +F  +
Sbjct: 123 DVLS----YVENKDKAFSEIRRVLVPDGLLI-ATVDNFYTFLQQMIEKDAWDQITRFLKT 177

Query: 197 VE 198
             
Sbjct: 178 QT 179

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 67.5 bits (165), Expect = 1e-13
 Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 28/193 (14%)

Query: 23  YLDPH----YWDERFSDEEHYEWLKDYSHFRHLVQP-HIKPNSSVLELGCGNSRLSEGLY 77
               +    YW++  +D    +          ++    ++    VL++GCG  + +  L 
Sbjct: 23  IWGENLHFGYWEDAGADVSVDDATDR--LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLA 80

Query: 78  NDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATME 136
                 +T I +S   V +   R    G    V    AD +DLPF +  FD V     +E
Sbjct: 81  TARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVW---ALE 137

Query: 137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWS 196
               +  D               L  + RVL+P G      F       P         +
Sbjct: 138 S-LHHMPDR-----------GRALREMARVLRPGGTVAIADFVL---LAPV--EGAKKEA 180

Query: 197 VEWITFGDGFHYF 209
           V+    G G    
Sbjct: 181 VDAFRAGGGVLSL 193

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 25/172 (14%), Positives = 64/172 (37%), Gaps = 26/172 (15%)

Query: 27  HYWDERFSDEEHYEWLKDYSHF-------RHLVQPHIKPNSSVLELGCGNSRLSEGLYND 79
             +D++ +  ++ + +              +++        + +++G G   LS  L   
Sbjct: 7   KKFDKKGA--KNMDEISKTLFAPIYPIIAENIINRFGITAGTCIDIGSGPGALSIALAKQ 64

Query: 80  GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEVL 138
              +I  +D S    E   + +      + +++++ D+ ++P  ++  D+++   +   +
Sbjct: 65  SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIV---SRGSV 121

Query: 139 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG-LFISVSFGQPHFRRPFFN 189
           F    D             A  E ++R+LK  G  +I   FG    R     
Sbjct: 122 F-FWED----------VATAFRE-IYRILKSGGKTYIGGGFGNKELRDSISA 161

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 29/164 (17%), Positives = 45/164 (27%), Gaps = 34/164 (20%)

Query: 26  PHY--WDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITA 83
             Y  W                      ++  + P  S+LE+G G       L       
Sbjct: 8   EAYEAWYGTPLGAYVIAEE------ERALKGLLPPGESLLEVGAGTGYWLRRLPYPQKVG 61

Query: 84  ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSG 143
           +   + S   +   + R       E   + A    LPF  + FDVV     +        
Sbjct: 62  V---EPSEAMLAVGRRRA-----PEATWVRAWGEALPFPGESFDVV----LLFTTLEFVE 109

Query: 144 DPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPF 187
           D              +L    RVL+P G  +    G      P+
Sbjct: 110 DV-----------ERVLLEARRVLRPGGALV---VGVLEALSPW 139

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 66.6 bits (162), Expect = 2e-13
 Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 23/180 (12%)

Query: 24  LDPHYWDERFSDEEHYEWLKDYSH--FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGI 81
           ++   W++ + +E    W +  +     HLV     P    L  GCG       + +   
Sbjct: 31  VEEGGWEKCWEEEITP-WDQGRATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPER 89

Query: 82  TAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEVLFV 140
             +  +D+S  A+ K  E        E    ++ D+       + FD++ +      +  
Sbjct: 90  F-VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP-TELFDLIFDYVFFCAI-- 145

Query: 141 NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWI 200
              +P            A  + ++ +LKPDG  I++ +            P +   V   
Sbjct: 146 ---EPE--------MRPAWAKSMYELLKPDGELITLMYPITDHV----GGPPYKVDVSTF 190

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 66.7 bits (163), Expect = 3e-13
 Identities = 30/182 (16%), Positives = 62/182 (34%), Gaps = 30/182 (16%)

Query: 27  HYWDERFSDEEHYEWL--KDYSH------FRHLVQP-HIKPNSSVLELGCGNSRLSEGLY 77
            Y DE     + YE++  ++Y         + ++    +  NS VL++G G       + 
Sbjct: 18  QYTDE---GVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYIN 74

Query: 78  NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 137
                    ID+ +  V    ER+   G  ++     D+L   F  + FD++  +  +  
Sbjct: 75  EKYGAHTHGIDICSNIVNMANERV--SGNNKIIFEANDILTKEFPENNFDLIYSRDAILA 132

Query: 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSV 197
           L +            +       +  ++ LKP G  +   +             +F   V
Sbjct: 133 LSL-------ENKNKL------FQKCYKWLKPTGTLLITDYCA---TEKENWDDEFKEYV 176

Query: 198 EW 199
           + 
Sbjct: 177 KQ 178

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 65.6 bits (160), Expect = 5e-13
 Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 26/187 (13%)

Query: 27  HYWDE-RFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAIT 85
            + D  R    E    + D +    ++         VL+LGCG   L   L + GI A  
Sbjct: 23  AWIDAVRHGAIESRRQVTDQAILLAILGR---QPERVLDLGCGEGWLLRALADRGIEA-V 78

Query: 86  CIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDP 145
            +D     V+  +              +     +P   D +D++        L       
Sbjct: 79  GVDGDRTLVDAARAAGA-GEVHLASYAQLAEAKVPVGKD-YDLIC---ANFAL------- 126

Query: 146 WNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF--RRPFFNAPQFTWSVEWITFG 203
            +     +      L  +  +L P G  + +    P       + +  +      +    
Sbjct: 127 LHQDIIEL------LSAMRTLLVPGGALV-IQTLHPWSVADGDYQDGWREESFAGFAGDW 179

Query: 204 DGFHYFF 210
               ++F
Sbjct: 180 QPMPWYF 186

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 65.2 bits (159), Expect = 7e-13
 Identities = 35/183 (19%), Positives = 66/183 (36%), Gaps = 23/183 (12%)

Query: 51  LVQPHIKPNSSVLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEV 109
            +      N  +L+LG G   LS  L      A  T +D+S   +E  + R   +G  +V
Sbjct: 37  SIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRF--RGNLKV 94

Query: 110 KVLEADMLDLPFSNDCFDVVIEKATMEVL-FVNSGDPWNPQPETVTKVMAMLEGVHRVLK 168
           K +EAD     F  + +D+V+   +   +  +   D              + +  + +LK
Sbjct: 95  KYIEADYSKYDF-EEKYDMVV---SALSIHHLEDEDKK-----------ELYKRSYSILK 139

Query: 169 PDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQS 228
             G+FI+           F      T   +++           I    +RS  D+++  +
Sbjct: 140 ESGIFINADLVHGE--TAFIENLNKTIWRQYVENSGLTEEE--IAAGYERSKLDKDIEMN 195

Query: 229 HDK 231
              
Sbjct: 196 QQL 198

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 65.5 bits (159), Expect = 7e-13
 Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 24/166 (14%)

Query: 28  YWDERFSDEEHYEW----LKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITA 83
           YW++   +     W     +         +    P   +++  CGN   ++ L       
Sbjct: 22  YWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFPR- 80

Query: 84  ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIEKATMEVLF 139
           +  +D+S  A+E   +         +     D L         ++  D  I    M   F
Sbjct: 81  VIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDANI---YMRTGF 134

Query: 140 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRR 185
                   P  +       + + +  +L   G    +  G      
Sbjct: 135 H-----HIPVEKRE----LLGQSLRILLGKQGAMYLIELGTGCIDF 171

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 23/144 (15%), Positives = 52/144 (36%), Gaps = 19/144 (13%)

Query: 38  HYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKM 97
           H +   D +    +     K N  VL++  G   ++          +   DL+   ++  
Sbjct: 20  HAKG-SDLAKLMQIAAL--KGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVA 75

Query: 98  QERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVM 157
           +  +   G+++V+ ++ D   +PF+++ F +V                 +          
Sbjct: 76  RAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVT------CRIA----AHH-----FPNPA 120

Query: 158 AMLEGVHRVLKPDGLFISVSFGQP 181
           + +   +RVLK  G  + V    P
Sbjct: 121 SFVSEAYRVLKKGGQLLLVDNSAP 144

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 65.4 bits (159), Expect = 1e-12
 Identities = 36/170 (21%), Positives = 57/170 (33%), Gaps = 24/170 (14%)

Query: 56  IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD 115
                  LELG G  R++  L   G      +D  A  +E  ++++     K V+V++AD
Sbjct: 37  KGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRK-VQVVQAD 94

Query: 116 MLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175
              +P  ++    VI    + +          P    V      L    RVLKP G  + 
Sbjct: 95  ARAIPLPDESVHGVI---VVHLWH------LVPDWPKV------LAEAIRVLKPGGALLE 139

Query: 176 VSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEEL 225
                         +P++T    W  F     +        KR    EE 
Sbjct: 140 GWDQAEA-------SPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEA 182

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 25/133 (18%)

Query: 55  HIKPNSSVLELGCGN----SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVK 110
            +K   +VL++G G       LS+ +   G   +  ID+    V    E++   G K V+
Sbjct: 34  GLKEGMTVLDVGTGAGFYLPYLSKMVGEKG--KVYAIDVQEEMVNYAWEKVNKLGLKNVE 91

Query: 111 VLEADMLDLPFSNDCFDVVIEKATMEVLFV--NSGDPWNPQPETVTKVMAMLEGVHRVLK 168
           VL+++   +P  ++  D +       + F      +P           +  LE + RV K
Sbjct: 92  VLKSEENKIPLPDNTVDFIF------MAFTFHELSEP-----------LKFLEELKRVAK 134

Query: 169 PDGLFISVSFGQP 181
           P      + + + 
Sbjct: 135 PFAYLAIIDWKKE 147

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 63.7 bits (155), Expect = 3e-12
 Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 20/129 (15%)

Query: 56  IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD 115
            +    VL++G G    +             +D +   VE        KG + V+  +  
Sbjct: 19  CRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGT 77

Query: 116 MLDLPFSNDCFDVVIEKATMEVLFV--NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF 173
              LPF +D FD++         +   +  D             A+ E V RVLK DG F
Sbjct: 78  AESLPFPDDSFDIIT------CRYAAHHFSDV----------RKAVRE-VARVLKQDGRF 120

Query: 174 ISVSFGQPH 182
           + V    P 
Sbjct: 121 LLVDHYAPE 129

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 62.7 bits (152), Expect = 5e-12
 Identities = 27/184 (14%), Positives = 50/184 (27%), Gaps = 40/184 (21%)

Query: 28  YWDE--RFSDEEHYEWLKDYSH------FRHLVQPHIKPNSSVLELGCGNSRLSEGLYND 79
            +D   R      + W +  S       F   +   + P + VLE GCG+   +      
Sbjct: 10  SYDRLARELGGYRHPWARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQ 69

Query: 80  GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFS-NDCFDVVIEKATMEV 137
                   D S   ++  +            V E +    LP      F ++        
Sbjct: 70  A-ARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAGLGAPFGLI-------- 115

Query: 138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG--LFISVSFGQPHFRRPFFNAPQFTW 195
             V+   P            +++  +  +  PD   L++      P        A  +  
Sbjct: 116 --VSRRGP-----------TSVILRLPELAAPDAHFLYVGPRLNVPEVPER-LAAVGWDI 161

Query: 196 SVEW 199
             E 
Sbjct: 162 VAED 165

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 63.0 bits (153), Expect = 7e-12
 Identities = 31/175 (17%), Positives = 51/175 (29%), Gaps = 24/175 (13%)

Query: 41  WLKDYSHFRHLVQPHIKPNSSVLELGCGN----SRLSEGLYNDGITAITCIDLSAVAVEK 96
           +  DY  F       I     +++ GCG       L   L        T ID     + +
Sbjct: 5   YNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGS--KYTGIDSGETLLAE 62

Query: 97  MQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKV 156
            +E   L  Y   + LE D  ++   ND +D+ I       L           PE     
Sbjct: 63  ARELFRLLPYD-SEFLEGDATEIEL-NDKYDIAI---CHAFLL------HMTTPE----- 106

Query: 157 MAMLEGVHRVLKPDGLFISVSFGQPHFR-RPFFNAPQFTWSVEWITFGDGFHYFF 210
             ML+ +   +K  G  I               +  + +  ++       F    
Sbjct: 107 -TMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDT 160

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 64.1 bits (155), Expect = 8e-12
 Identities = 30/201 (14%), Positives = 62/201 (30%), Gaps = 38/201 (18%)

Query: 20  TSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGL--Y 77
            +A+  P    +R       E+        H+ +       ++++ GCG+  L + L  Y
Sbjct: 697 EAAFFKPPLSKQR------VEYALK-----HIRESSAS---TLVDFGCGSGSLLDSLLDY 742

Query: 78  NDGITAITCIDLSAVAVEKMQERLLLK------GYKEVKVLEADMLDLPFSNDCFDVVIE 131
              +  I  +D+S   + +  + L +K        K   + +  +L+        D+   
Sbjct: 743 PTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTC 802

Query: 132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV---SFGQPHFRRPFF 188
              +E            + +         E V  +  P  L +S     F     R    
Sbjct: 803 LEVIE---------HMEEDQ----ACEFGEKVLSLFHPKLLIVSTPNYEFNTILQRSTPE 849

Query: 189 NAPQFTWSVEWITFGDGFHYF 209
              +     +   F +  H F
Sbjct: 850 TQEENNSEPQLPKFRNHDHKF 870

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 62.2 bits (151), Expect = 9e-12
 Identities = 29/174 (16%), Positives = 57/174 (32%), Gaps = 23/174 (13%)

Query: 25  DPHYWDERFSDEEHYEWLKDYSHFR-HLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITA 83
           D H  D  F  EE +   ++    R     P+ K    VL++GCG     E    +GI +
Sbjct: 7   DIHTSDYYFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIES 66

Query: 84  ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSG 143
              +D++   ++  + +        V   +A        +   D V+    +E L     
Sbjct: 67  -IGVDINEDMIKFCEGKF------NVVKSDAIEYLKSLPDKYLDGVMISHFVEHL----- 114

Query: 144 DPWNPQPETVTKVMAMLEGVHRVLKPDG-LFISV-SFGQPHFRRPFFNAPQFTW 195
                      ++  +L   +  +K    + I   +    +    F+  P    
Sbjct: 115 --DPE------RLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKK 160

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 24/123 (19%)

Query: 56  IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD 115
                 +++ GCGN    + L       + CID++ +A+++++E+           +   
Sbjct: 15  EGKKGVIVDYGCGNGFYCKYLLEFATK-LYCIDINVIALKEVKEK--------FDSVITL 65

Query: 116 MLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175
                  ++  D ++                    +       ++  V R+LK DG  I 
Sbjct: 66  SDPKEIPDNSVDFIL---FANSFH------DMDDKQ------HVISEVKRILKDDGRVII 110

Query: 176 VSF 178
           + +
Sbjct: 111 IDW 113

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 28/192 (14%)

Query: 28  YWDERFSDEEHYEWL--KDYSHFRHLVQPHIKP---NSSVLELGCGNSRLSEGLYNDGIT 82
            +D+   D   +++    D+      +     P     ++LELG      +  L      
Sbjct: 7   NYDQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFND 66

Query: 83  AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNS 142
            ITC++ S  A+   Q RL       +  + +   D       +D ++      VL    
Sbjct: 67  -ITCVEASEEAISHAQGRLKDG----ITYIHSRFEDAQLPRR-YDNIV---LTHVL---- 113

Query: 143 GDPWNPQPETVTKVMAMLEGVH-RVLKPDG-LFISVSFGQPHFRRPFFNAPQFTWSVEWI 200
                   E +   +A+L+ ++   L   G LF+         R+        + +    
Sbjct: 114 --------EHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVT 165

Query: 201 TFGDGFHYFFYI 212
                  +    
Sbjct: 166 EAEFAHGHRCTY 177

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 62.4 bits (151), Expect = 1e-11
 Identities = 34/226 (15%), Positives = 73/226 (32%), Gaps = 17/226 (7%)

Query: 4   DQNPKASEKKTIGPPTTSAYLDPHY--WDERFSDEEHYEWLKDYSHF-----RHLVQPHI 56
             +P  + +K          +  HY    ER  +        +  +        L++ + 
Sbjct: 3   SSSPLKTFRKDQAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYT 62

Query: 57  KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM 116
           K   SVL+LGCG           GI     +D++ V++   + R      + +K      
Sbjct: 63  KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR-----ARNMKR---RF 114

Query: 117 LDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 176
                + D +   ++    E   ++S   ++    T   +      + R L+P G FI +
Sbjct: 115 KVFFRAQDSYGRHMDL-GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI-M 172

Query: 177 SFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSAD 222
           +          +   + +     I            +R+ + +  D
Sbjct: 173 TVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLD 218

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 61.2 bits (148), Expect = 2e-11
 Identities = 24/161 (14%), Positives = 52/161 (32%), Gaps = 29/161 (18%)

Query: 28  YWDERFSDEEHYEWLKDYSH------------FRHLVQ--PHIKPNSSVLELGCGNSRLS 73
           YW +     +    L  Y H             +  ++  P+    S  L+ G G  R++
Sbjct: 37  YWKQIPPTVDGM--LGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRIT 94

Query: 74  EGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 133
           + L       +  +D++   + + +  L  +G +        + D     D +DV+  + 
Sbjct: 95  KRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW 154

Query: 134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174
            +  L                     L      L+P+G+ +
Sbjct: 155 VIGHL---------TDQHLA----EFLRRCKGSLRPNGIIV 182

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 26/163 (15%)

Query: 31  ERFSDEEHYEWLKDY--SHFRHLVQP-HIKPNSSVLELGCGNSRLSEGLYNDGITAITCI 87
           + F D   Y+    +   +   L+Q  + +P   +L+LGCG  +L+E +   G   +   
Sbjct: 27  KNFWDATLYQDKHSFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAE-VLGT 85

Query: 88  DLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWN 147
           D +A  +EK ++      Y  +    AD  +        D V         F N+   W 
Sbjct: 86  DNAATMIEKARQN-----YPHLHFDVADARNFRVDK-PLDAV---------FSNAMLHWV 130

Query: 148 PQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNA 190
            +PE        +  +H+ LK  G F+   FG     +    A
Sbjct: 131 KEPEAA------IASIHQALKSGGRFV-AEFGGKGNIKYILEA 166

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 19/123 (15%)

Query: 60  SSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKGY-----KEVKVLE 113
             V++LGCG   L   L  D     IT +D+S   +E+ ++RL +        K + + +
Sbjct: 31  KKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQ 90

Query: 114 ADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF 173
           + ++        +D       +E            +      + A  + +    +P  + 
Sbjct: 91  SSLVYRDKRFSGYDAATVIEVIE---------HLDENR----LQAFEKVLFEFTRPQTVI 137

Query: 174 ISV 176
           +S 
Sbjct: 138 VST 140

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 58.3 bits (141), Expect = 4e-10
 Identities = 35/203 (17%), Positives = 68/203 (33%), Gaps = 34/203 (16%)

Query: 15  IGPPTTSAYLDP--HYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRL 72
           IGP   +A  DP    ++++   E H             +     P+ ++++ GCG    
Sbjct: 73  IGPVDRAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQ-AGPDDTLVDAGCGRGGS 131

Query: 73  SEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVV-- 129
               +    + +  + LSA   +    R       + V+    +MLD PF          
Sbjct: 132 MVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWN 191

Query: 130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFN 189
            E +TM V         +           +     R LK  G +++++        P + 
Sbjct: 192 NE-STMYV-------DLH----------DLFSEHSRFLKVGGRYVTITGC----WNPRYG 229

Query: 190 APQFTWSVEWITFGDGFHYFFYI 212
            P      +W++  +  H+   I
Sbjct: 230 QPS-----KWVSQINA-HFECNI 246

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 57.9 bits (139), Expect = 5e-10
 Identities = 26/220 (11%), Positives = 62/220 (28%), Gaps = 39/220 (17%)

Query: 22  AYLDPHYWDERFSDEEHYEWLKDYSHF--------RHLVQPHIKPNSSVLELGCGNSRLS 73
             L+     E    +  +E L+ +  +                +     + +G G   L+
Sbjct: 78  MKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLT 137

Query: 74  E-GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK 132
              L +     +  +++     E  ++ +   G   V V+  D   +      FDV++  
Sbjct: 138 GILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLE--FDVLMVA 195

Query: 133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAP- 191
           A  E                      +   +HR +  +     + +      R    AP 
Sbjct: 196 ALAE-------PKR-----------RVFRNIHRYVDTETR---IIYRTYTGMRAILYAPV 234

Query: 192 ------QFTWSVEWITFGDGFHYFFYILRKGKRSSADEEL 225
                  F  +   +  G   +    + +   +   + +L
Sbjct: 235 SDDDITGFRRAGVVLPSGKVNNTSVLVFKCPDKGELNSKL 274

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 56.4 bits (136), Expect = 6e-10
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 10/135 (7%)

Query: 44  DYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL 103
             SH    +   +   S V++   GN   +  L           D+   A+ K  +RL  
Sbjct: 10  HMSHD--FLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVY-AFDVQEQALGKTSQRLSD 66

Query: 104 KGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDP-WNPQPETVTKVMAMLEG 162
            G +  +++     +L          I  A   + ++ S D     +P T    +  +E 
Sbjct: 67  LGIENTELILDGHENLD---HYVREPIRAAIFNLGYLPSADKSVITKPHT---TLEAIEK 120

Query: 163 VHRVLKPDGLFISVS 177
           +   L+  G    + 
Sbjct: 121 ILDRLEVGGRLAIMI 135

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 27/144 (18%)

Query: 39  YEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKM 97
              +        L Q + +    V++LGCG   L + L  D     IT +D+S  ++E  
Sbjct: 18  MNGVVA-----ALKQSNAR---RVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIA 69

Query: 98  QERL-----LLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPET 152
           QERL         ++ +++++  +         +D                +       +
Sbjct: 70  QERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT-----------VIEVIEHLDLS 118

Query: 153 VTKVMAMLEGVHRVLKPDGLFISV 176
              + A    +    +P  + ++ 
Sbjct: 119 R--LGAFERVLFEFAQPKIVIVTT 140

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 28/222 (12%), Positives = 62/222 (27%), Gaps = 35/222 (15%)

Query: 28  YWDERFSDEEHYEWLKDYSHF---------RHLVQPHIKPNSSVLELGCGNSRLSEGLYN 78
           YW    +       L    H            +        S  L+ G G  R+++ L  
Sbjct: 56  YWRTVPATVSGV--LGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLT 113

Query: 79  DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 138
                   ++     +E+ +    L G    K + A M       + +D+++    ++  
Sbjct: 114 KLYATTDLLEPVKHMLEEAKRE--LAGMPVGKFILASMETATLPPNTYDLIV----IQWT 167

Query: 139 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVE 198
            +   D            +   +   + L P+G           F+       +F    E
Sbjct: 168 AIYLTDA---------DFVKFFKHCQQALTPNGYIF--------FKENCSTGDRFLVDKE 210

Query: 199 WITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMF 240
             +      ++  +  +       E   +     L P + M+
Sbjct: 211 DSSLTRSDIHYKRLFNESGVRVVKEAFQEEWPTDLFP-LKMY 251

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 14/140 (10%)

Query: 48  FRHLVQPHIKPNSSVLELGCGNSRLSEGL--YNDGITAITCIDLSAVAVEKMQERL--LL 103
           ++ + + H      ++++GCG    +  +         I   DLSA  ++  +       
Sbjct: 26  YKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP 85

Query: 104 KGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGV 163
             YK V    +   D  F        ++K  ++++       W                 
Sbjct: 86  DTYKNVSFKISSSDDFKFLGADS---VDKQKIDMITAVECAHWFDFE-------KFQRSA 135

Query: 164 HRVLKPDGLFISVSFGQPHF 183
           +  L+ DG      +  P F
Sbjct: 136 YANLRKDGTIAIWGYADPIF 155

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 28/165 (16%), Positives = 49/165 (29%), Gaps = 24/165 (14%)

Query: 48  FRHLVQP-HIKPNSSVLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKG 105
            R L+    ++   +  +LGCG    +E L +      IT ID     +EK  +R     
Sbjct: 22  ARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR----- 76

Query: 106 YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHR 165
                  +AD+     +    D++         + N+   W P         A+L  +  
Sbjct: 77  LPNTNFGKADLATWKPAQK-ADLL---------YANAVFQWVPDHL------AVLSQLMD 120

Query: 166 VLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFF 210
            L+  G+   V               +      W     G     
Sbjct: 121 QLESGGVLA-VQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRR 164

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 54.6 bits (131), Expect = 3e-09
 Identities = 39/212 (18%), Positives = 66/212 (31%), Gaps = 56/212 (26%)

Query: 25  DPHYWDE--RFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGIT 82
           DP  +    R    +  +W                 +  V + GCG+ RL+  + N    
Sbjct: 32  DPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIRNP--- 88

Query: 83  AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNS 142
            + C DL+                 + +V   DM  +P  ++  DV +    + ++  N 
Sbjct: 89  -VHCFDLA---------------SLDPRVTVCDMAQVPLEDESVDVAV--FCLSLMGTNI 130

Query: 143 GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITF 202
            D               LE  +RVLKP GL              F +   F  +V  +  
Sbjct: 131 RD--------------FLEEANRVLKPGGLLKVA-----EVSSRFEDVRTFLRAVTKL-- 169

Query: 203 GDGF----------HYFFYILRKGKRSSADEE 224
             GF          H+F +  +K        +
Sbjct: 170 --GFKIVSKDLTNSHFFLFDFQKTGPPLVGPK 199

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 53.8 bits (129), Expect = 1e-08
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 29/157 (18%)

Query: 32  RFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITA-ITCIDLS 90
            F D  HY+ L+D      L +      ++VL++GCG    +    +         +D+S
Sbjct: 60  AFLDAGHYQPLRDAIV-AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVS 118

Query: 91  AVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQP 150
            VA++   +R     Y +V    A    LPFS+   D +I       ++           
Sbjct: 119 KVAIKAAAKR-----YPQVTFCVASSHRLPFSDTSMDAII------RIYA---------- 157

Query: 151 ETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPF 187
                     E + RV+KP G  I+ + G  H     
Sbjct: 158 ------PCKAEELARVVKPGGWVITATPGPRHLMELK 188

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 51.1 bits (122), Expect = 5e-08
 Identities = 30/192 (15%), Positives = 67/192 (34%), Gaps = 26/192 (13%)

Query: 44  DYSHFRHLVQPHIKPNSSVLELGCGN----SRLSEGLYNDGITAITCIDLSAVAVEKMQE 99
             SH    ++  +K   +V++  CGN    + L+  +  +G   +   D+   A+    +
Sbjct: 10  GQSH--DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENG--RVFGFDIQDKAIANTTK 65

Query: 100 RLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGD-PWNPQPETVTKVM 157
           +L      + V +++    ++    DC    ++     + ++ SGD   + +PET  +  
Sbjct: 66  KLTDLNLIDRVTLIKDGHQNMDKYIDC---PVKAVMFNLGYLPSGDHSISTRPETTIQA- 121

Query: 158 AMLEGVHRVLKPDGLFISVSF-GQPHFRRP-------FFNAPQFTWSVEWITFGDGFH-- 207
             L     +L   G+   V + G                   Q  + V+   F +  +  
Sbjct: 122 --LSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCP 179

Query: 208 YFFYILRKGKRS 219
                + K    
Sbjct: 180 PILVCIEKISEG 191

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score = 51.1 bits (121), Expect = 9e-08
 Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 13/185 (7%)

Query: 41  WLKDY--SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQ 98
           W+K      F   V+   K + +VL+LGCG            I  + C D++ V+V++ Q
Sbjct: 15  WMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQ 74

Query: 99  ERL--LLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKV 156
           +R   +        +  A+ +    S +          M     +     +   E+  + 
Sbjct: 75  QRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQA 134

Query: 157 MAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNA--PQFTWSVEWITF-------GDGFH 207
             ML      L P G FI  +       R    +    F   +  + F         G  
Sbjct: 135 DMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCK 194

Query: 208 YFFYI 212
           Y F +
Sbjct: 195 YDFNL 199

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 24/199 (12%), Positives = 53/199 (26%), Gaps = 38/199 (19%)

Query: 28  YWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGL-------YNDG 80
           + +     +   E++              K    +L +G G   +   +       Y   
Sbjct: 22  FLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGV 81

Query: 81  ITAITCIDLSAVAVEKMQERL-LLKGYKEVKV--------LEADMLDLPFSNDCFDVVIE 131
                 ++ SA  + K +E +      + VK              +        +D +  
Sbjct: 82  CINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIH- 140

Query: 132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG-LFISVSFGQPHFRRPFFNA 190
              +++L              V  + A L+  H +L  +  + I V  G   + + +   
Sbjct: 141 --MIQML------------YYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKY 186

Query: 191 PQFTWSVEWITFGDGFHYF 209
                        D   Y 
Sbjct: 187 G------SRFPQDDLCQYI 199

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 22/136 (16%)

Query: 46  SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG 105
              +  + P       VL+LG G   L+  L   G   +  ++    +V  +Q+ L    
Sbjct: 221 EALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAE-VVGVEDDLASVLSLQKGLEANA 279

Query: 106 YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNP----QPETVTKV-MAML 160
             + + L +D+ +       FD+++                NP        +  V  A +
Sbjct: 280 -LKAQALHSDVDEALTEEARFDIIV---------------TNPPFHVGGAVILDVAQAFV 323

Query: 161 EGVHRVLKPDGLFISV 176
                 L+P G+F  V
Sbjct: 324 NVAAARLRPGGVFFLV 339

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score = 45.5 bits (107), Expect = 7e-06
 Identities = 22/177 (12%), Positives = 46/177 (25%), Gaps = 12/177 (6%)

Query: 46  SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL-LK 104
           S +             VL +  GN    E  +   I  +   D  A A+ +  ER   L 
Sbjct: 36  SMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLN 95

Query: 105 GYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF--VNSGDPWNPQPETVTKVMAMLEG 162
              + K  + D +     +D F   + +      F  ++     +           ++  
Sbjct: 96  SGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHY-ATVMNN 154

Query: 163 VHRVLKPDGLFISVSFGQPHFRR--------PFFNAPQFTWSVEWITFGDGFHYFFY 211
           +  +    G  +  +       +           N P     +      D     + 
Sbjct: 155 LSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYN 211

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 31/156 (19%), Positives = 53/156 (33%), Gaps = 25/156 (16%)

Query: 55  HIKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVL 112
            +KP + +L+LG G+  +      D GIT  T ID+S++   + + R    G  E V  +
Sbjct: 33  RMKPGTRILDLGSGSGEMLCTWARDHGITG-TGIDMSSLFTAQAKRRAEELGVSERVHFI 91

Query: 113 EADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL 172
             D      +  C       AT                          E + + LKP G+
Sbjct: 92  HNDAAGYVANEKCDVAACVGAT----------------WIAGGFAGAEELLAQSLKPGGI 135

Query: 173 FISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHY 208
            +    G+P++R+    A +                
Sbjct: 136 ML---IGEPYWRQL--PATEEIAQ-ACGVSSTSDFL 165

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 25/129 (19%)

Query: 57  KPNSSVLELGCGNSRLSEGL-YNDGITAITCIDLSAVAVEKMQ---ERLLLKGYKEVKVL 112
                +++LGCGN  +   L   +    +  +D S +AV   +   E  + +     + +
Sbjct: 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM 280

Query: 113 EADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNP-----QPETVTKVMAMLEGVHRVL 167
             + L        F+ V+                NP        T      M     R L
Sbjct: 281 INNALS-GVEPFRFNAVL-----------C----NPPFHQQHALTDNVAWEMFHHARRCL 324

Query: 168 KPDGLFISV 176
           K +G    V
Sbjct: 325 KINGELYIV 333

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Length = 252

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 20/211 (9%), Positives = 57/211 (27%), Gaps = 46/211 (21%)

Query: 23  YLDPHYWDERFSDE-------EHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEG 75
            L    W E++          + ++ LK +           +    V    CG +   + 
Sbjct: 30  VLTLEDWKEKWVTRHISFHQEQGHQLLKKHLDTFL----KGQSGLRVFFPLCGKAIEMKW 85

Query: 76  LYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135
             + G T +  +++S + + +      L   +E               +     + K++ 
Sbjct: 86  FADRGHT-VVGVEISEIGIREFFAEQNLSYTEEPLA------------EIAGAKVFKSSS 132

Query: 136 EVLFVNSGDPWNPQPETVTKVMAMLEG-----------------VHRVLKPDGLFISVSF 178
             + +     ++     + K   + +                  +  +L+ +  ++    
Sbjct: 133 GSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVL 192

Query: 179 GQPHFRRPFFNAPQFTWSVEWIT--FGDGFH 207
                +      P F      +   FG    
Sbjct: 193 SYDPTKHAG---PPFYVPSAELKRLFGTKCS 220

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 24/168 (14%), Positives = 48/168 (28%), Gaps = 33/168 (19%)

Query: 38  HYEWLKDYSHFRHLVQ-PHIKPNSSVLELGCGN----SRLSEGLYNDGITAITCIDLSAV 92
                +  +H   + +   +KP   +LE+GCG     + L++ + + G   +T ID+++ 
Sbjct: 22  RTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSG--HVTGIDIASP 79

Query: 93  AVEKM------QERLLLKGYK---EVKVLEADMLDL-PFSNDCFDVVIEKATMEVLFVNS 142
                         LL         V        DL P ++  FD V     +       
Sbjct: 80  DYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRV----VLAHSLWYF 135

Query: 143 GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNA 190
                            L  + + +      + V+             
Sbjct: 136 ASA------------NALALLFKNMAAVCDHVDVAEWSMQPTALDQIG 171

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 14/115 (12%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 31  ERFSDEEHYEWLKDYSHFR---------HLVQPHIKPNSSVLELGCGNSRLSEGLYND-G 80
           ++   +  Y     Y  +R          +++P       VL+LGC    L+  +    G
Sbjct: 10  KKQQRKFQYGNYCKYYGYRNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWG 69

Query: 81  ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 135
            + +  +D+ +  +   ++ +     +E+++    +   P +         +   
Sbjct: 70  PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 26/127 (20%)

Query: 56  IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLE 113
           +  +  +L+LGCG   +   L ++   + T  D++  A++  +E + L      +++V+ 
Sbjct: 50  VDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVH 108

Query: 114 ADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNP----QPETVTKVMAMLEGVHRVLKP 169
           +D+ +    +  ++ +I           +    NP      E + +   ++E    +LK 
Sbjct: 109 SDLYE-NVKDRKYNKII-----------T----NPPIRAGKEVLHR---IIEEGKELLKD 149

Query: 170 DGLFISV 176
           +G    V
Sbjct: 150 NGEIWVV 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.95
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.85
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.81
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.8
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.79
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.79
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.79
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.79
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.78
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.77
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.77
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.76
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.76
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.76
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.76
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.75
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.75
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.75
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.75
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.75
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.75
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.74
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.74
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.74
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.74
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.74
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.74
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.74
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.74
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.74
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.74
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.74
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.73
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.73
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.73
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.73
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.73
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.72
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.72
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.72
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.72
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.72
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.72
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.72
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.72
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.72
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.72
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.71
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.71
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.71
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.71
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.71
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.71
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.71
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.71
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.7
3ocj_A	305	Putative exported protein; structural genomics, PS	99.7
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.7
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.7
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.7
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.69
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.69
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.69
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.69
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.69
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.69
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.69
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.69
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.69
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.68
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.68
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.68
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.68
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.68
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.67
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.67
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.67
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.67
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.67
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.67
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.67
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.66
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.66
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.66
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.66
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.66
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.65
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.65
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.65
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.65
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.65
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.65
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.65
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.65
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.65
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.65
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.64
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.63
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.63
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.63
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.63
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.63
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.63
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.63
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.63
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.62
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.62
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.61
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.61
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.61
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.61
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.61
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.6
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.6
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.6
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.59
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.59
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.59
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.59
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.59
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.59
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.59
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.59
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.58
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.58
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.58
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.58
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.58
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.58
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.57
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.57
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.57
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.57
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.57
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.57
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.57
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.57
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.57
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.57
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.57
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.56
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.56
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.56
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.56
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.56
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.56
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.55
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.55
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.55
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.55
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.55
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.55
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.54
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.54
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.54
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.54
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.54
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.54
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.54
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.53
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.53
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.53
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.53
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.53
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.53
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.53
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.53
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.52
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.52
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.52
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.52
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.52
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.51
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.51
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.51
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.51
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.5
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.5
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.5
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.5
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.49
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.49
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.49
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.49
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.49
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.48
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.48
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.47
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.47
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.47
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.46
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.46
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.46
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.46
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.46
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.46
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.46
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.46
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.46
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.45
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.45
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.45
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.45
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.44
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.44
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.44
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.44
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.44
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.43
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.43
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.43
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.42
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.41
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.41
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.41
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.41
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.41
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.41
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.4
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.4
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.4
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.4
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.4
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.4
2o07_A	304	Spermidine synthase; structural genomics, structur	99.39
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.38
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.38
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.38
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.38
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.37
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.36
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.36
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.35
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.35
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.35
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.35
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.34
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.34
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.32
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.31
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.3
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.29
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.28
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.27
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.27
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.26
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.26
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.26
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.26
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.25
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.23
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.21
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.21
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.17
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.17
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.16
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.15
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.15
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.14
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.12
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.11
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.11
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.08
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.08
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.08
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.08
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.0
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.99
3lkd_A	542	Type I restriction-modification system methyltrans	98.97
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.96
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.91
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.89
3khk_A	544	Type I restriction-modification system methylation	98.86
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.85
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.85
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.81
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.8
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.76
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.75
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.68
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.67
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.59
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.45
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.41
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.41
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.4
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.39
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.39
3ufb_A	530	Type I restriction-modification system methyltran	98.36
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.34
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.27
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.2
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.14
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.08
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.82
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.82
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.8
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.7
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.57
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.35
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.32
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.28
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.22
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.2
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.18
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.06
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.96
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.88
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.74
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.66
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.51
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.37
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.35
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.27
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.26
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.21
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.18
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.11
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.03
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.03
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.02
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.95
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.92
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.9
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.89
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.87
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.85
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.84
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.82
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	95.71
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.63
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.62
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.62
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.57
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.57
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.49
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.4
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.37
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.22
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.2
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.18
3me5_A	482	Cytosine-specific methyltransferase; structural ge	95.15
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.15
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.11
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.09
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.08
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	95.01
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.93
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	94.92
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.91
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.9
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.89
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.81
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.76
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.73
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	94.71
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	94.65
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.52
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	94.42
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	94.41
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	94.32
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.21
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.13
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	94.06
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	93.98
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	93.93
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	93.92
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	93.89
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	93.83
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	93.8
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.77
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	93.77
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.69
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	93.67
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	93.64
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	93.61
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.23
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	93.05
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	93.03
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	92.99
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	92.9
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	92.87
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	92.62
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	92.61
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	92.56
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	92.56
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	92.51
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	92.39
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	92.32
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.28
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	92.21
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.2
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	92.19
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.18
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.17
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	92.17
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	92.08
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	91.93
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.87
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	91.82
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	91.11
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	90.78
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	90.66
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.62
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	90.5
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	90.44
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	90.27
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	90.17
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	89.97
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	89.94
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.93
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	89.93
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	89.88
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	89.88
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	89.83
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	89.72
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	89.37
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	89.29
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	89.1
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	88.97
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.77
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	88.74
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	88.41
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	88.21
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	88.19
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	88.13
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	88.11
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	88.08
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.07
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	87.73
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	87.66
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	87.6
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	87.54
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	87.46
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	87.41
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	87.36
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	87.24
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	87.21
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	86.94
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	86.69
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	86.6
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	86.4
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	86.3
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	85.99
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	85.96
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	85.81
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	85.73
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	85.58
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	85.43
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	85.41
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	85.29
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	84.86
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	84.6
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	84.35
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	84.23
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	84.06
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	83.47
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	83.21
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	83.2
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	82.88
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	82.8
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	82.77
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	82.75
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	82.66
3qha_A	296	Putative oxidoreductase; seattle structural genomi	82.11
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	82.0
4g65_A	461	TRK system potassium uptake protein TRKA; structur	81.73
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	81.64
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	81.6
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	81.52
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	81.45
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	81.42
3imf_A	257	Short chain dehydrogenase; structural genomics, in	81.4
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	81.31
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	81.29
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	81.21
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	81.02
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	80.88
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	80.69
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	80.61
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	80.57
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	80.34
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	80.27
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	80.17

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.95  E-value=6.2e-27  Score=190.43  Aligned_cols=197  Identities=38%  Similarity=0.764  Sum_probs=172.0

Q ss_pred             CCCCccchhhhcCCCC---cccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHH
Q 025039           22 AYLDPHYWDERFSDEE---HYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQ   98 (259)
Q Consensus        22 ~~~~~~~w~~~~~~~~---~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~   98 (259)
                      .|.+.+||+++|....   .+.|+.....+..++...+.++.+|||+|||+|.++..+++.+..+++++|+++.+++.++
T Consensus         3 ~~~~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~   82 (215)
T 2pxx_A            3 GYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQ   82 (215)
T ss_dssp             GGGCHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHH
T ss_pred             cccchhHHHHHhccCCCCCCcccccCHHHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHH
Confidence            5678999999998754   4679988888889888888889999999999999999999998668999999999999999


Q ss_pred             HHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039           99 ERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus        99 ~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +++..  .+++.+.++|+.++++++++||+|+++++++++......+|.+.+++..+...+++++.++|+|||.+++.++
T Consensus        83 ~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A           83 ACYAH--VPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             HHTTT--CTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             Hhccc--CCCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence            98764  2478999999988887778999999999998887666777877777788899999999999999999999999


Q ss_pred             CCccccccccCCCCCCcEEEEEEeCCeEEEEEEEEEeCCCCC
Q 025039          179 GQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSS  220 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (259)
                      +.++....++...++.|......++++.+++++++++.+...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (215)
T 2pxx_A          161 AAPHFRTRHYAQAYYGWSLRHATYGSGFHFHLYLMHKGGKLS  202 (215)
T ss_dssp             CCHHHHHHHHCCGGGCEEEEEEEESGGGCEEEEEEEETCCCC
T ss_pred             CCcHHHHHHHhccccCcEEEEEEecCcceEEEEEEEeCCCCC
Confidence            998888788877878898888888888899899998876553

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.85  E-value=2.6e-21  Score=161.90  Aligned_cols=141  Identities=11%  Similarity=0.230  Sum_probs=108.9

Q ss_pred             CCCccchhhhcCCCCccccc--ccchHHHHhhccc--CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHH
Q 025039           23 YLDPHYWDERFSDEEHYEWL--KDYSHFRHLVQPH--IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQ   98 (259)
Q Consensus        23 ~~~~~~w~~~~~~~~~~~w~--~~~~~~~~~l~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~   98 (259)
                      ..+.+||+++|..... .|.  ...+.+...+...  ..++.+|||+|||+|..+..|++.|. +|+|+|+|+.|++.|+
T Consensus        30 ~~~~~~Wd~~y~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~  107 (252)
T 2gb4_A           30 VLTLEDWKEKWVTRHI-SFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFF  107 (252)
T ss_dssp             CCCHHHHHHHHHHTCC-TTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             cCCHHHHHHHHhcCCC-CcccCCCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHH
Confidence            4568999999976532 232  2223344444332  24678999999999999999999998 9999999999999998


Q ss_pred             HHHhh-----------------cCCCCeEEEEcccCCCcCCC-CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHH
Q 025039           99 ERLLL-----------------KGYKEVKVLEADMLDLPFSN-DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAML  160 (259)
Q Consensus        99 ~~~~~-----------------~~~~~v~~~~~d~~~~~~~~-~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  160 (259)
                      ++...                 ....++++.++|+.+++..+ ++||+|++.++++++             +..+...++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l-------------~~~~~~~~l  174 (252)
T 2gb4_A          108 AEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAI-------------NPGDHDRYA  174 (252)
T ss_dssp             HHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTS-------------CGGGHHHHH
T ss_pred             HhcccccccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhC-------------CHHHHHHHH
Confidence            77532                 01246999999999987653 789999999888776             334667899


Q ss_pred             HHHHhcccCCcEEEEEec
Q 025039          161 EGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       161 ~~~~~~LkpgG~l~~~~~  178 (259)
                      +++.++|||||+++++++
T Consensus       175 ~~~~~~LkpGG~l~l~~~  192 (252)
T 2gb4_A          175 DIILSLLRKEFQYLVAVL  192 (252)
T ss_dssp             HHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHcCCCeEEEEEEE
Confidence            999999999999976543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.81  E-value=1.6e-19  Score=151.78  Aligned_cols=118  Identities=20%  Similarity=0.318  Sum_probs=100.0

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCC--C-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCC
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGI--T-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSN  123 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~  123 (259)
                      +..++..+++++.+|||+|||+|..+..+++...  . +|+|+|+|+.|++.|++++...+.. +++++++|+.++++  
T Consensus        60 i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--  137 (261)
T 4gek_A           60 IGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--  137 (261)
T ss_dssp             HHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--
T ss_pred             HHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--
Confidence            3445556788999999999999999999988632  2 8999999999999999998877654 59999999998875  


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +.||+|+++.+++++             ...+...+|++++++|||||+|++.+...
T Consensus       138 ~~~d~v~~~~~l~~~-------------~~~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          138 ENASMVVLNFTLQFL-------------EPSERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             CSEEEEEEESCGGGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             cccccceeeeeeeec-------------CchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence            469999999999887             44677889999999999999999986543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.80  E-value=5.9e-19  Score=142.18  Aligned_cols=135  Identities=24%  Similarity=0.391  Sum_probs=106.5

Q ss_pred             chhhhcCCCCcccccccchH-HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC
Q 025039           28 YWDERFSDEEHYEWLKDYSH-FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY  106 (259)
Q Consensus        28 ~w~~~~~~~~~~~w~~~~~~-~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~  106 (259)
                      ||+++|.... ..|...... +..++. .++++ +|||+|||+|..+..+++.+. +++++|+++.+++.+++++...+.
T Consensus         1 ~W~~~y~~~~-~~~~~~~~~~l~~~~~-~~~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~   76 (202)
T 2kw5_A            1 MWDERFSQSE-YVYGTEPNDFLVSVAN-QIPQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV   76 (202)
T ss_dssp             CCCCCCCCCC-CCCCCCCCSSHHHHHH-HSCSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC
T ss_pred             Chhhhhcccc-hhhccCchHHHHHHHH-hCCCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC
Confidence            6888887643 233333333 334433 45667 999999999999999999877 999999999999999999887765


Q ss_pred             CCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          107 KEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       107 ~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                       ++.+.++|+.++++++++||+|++..  .++             ...+...+++++.++|+|||.+++.++....
T Consensus        77 -~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~-------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  136 (202)
T 2kw5_A           77 -KITTVQSNLADFDIVADAWEGIVSIF--CHL-------------PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQ  136 (202)
T ss_dssp             -CEEEECCBTTTBSCCTTTCSEEEEEC--CCC-------------CHHHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred             -ceEEEEcChhhcCCCcCCccEEEEEh--hcC-------------CHHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence             78999999988877778999999842  222             3467889999999999999999998876543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.79  E-value=1.5e-19  Score=151.69  Aligned_cols=113  Identities=19%  Similarity=0.285  Sum_probs=96.9

Q ss_pred             hHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCc
Q 025039           46 SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDC  125 (259)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  125 (259)
                      ..+.+.+......+.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++      +++.+.++|+.++++++++
T Consensus        27 ~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~------~~v~~~~~~~e~~~~~~~s   99 (257)
T 4hg2_A           27 RALFRWLGEVAPARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH------PRVTYAVAPAEDTGLPPAS   99 (257)
T ss_dssp             HHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC------TTEEEEECCTTCCCCCSSC
T ss_pred             HHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc------CCceeehhhhhhhcccCCc
Confidence            345666666666778999999999999999999987 999999999999877542      5799999999999999999


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      ||+|++..++|++                +..++++++.++|||||+|++..++..
T Consensus       100 fD~v~~~~~~h~~----------------~~~~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A          100 VDVAIAAQAMHWF----------------DLDRFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             EEEEEECSCCTTC----------------CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             ccEEEEeeehhHh----------------hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            9999999988765                345789999999999999999887654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.79  E-value=8.9e-19  Score=140.40  Aligned_cols=133  Identities=20%  Similarity=0.389  Sum_probs=109.7

Q ss_pred             CCCccchhhhcCCCCcccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh
Q 025039           23 YLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL  102 (259)
Q Consensus        23 ~~~~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~  102 (259)
                      +...+||+..|.....      ...+...+.  ..++.+|||+|||+|..+..+++.+. +++++|+|+.+++.+++++.
T Consensus         5 ~~~~~~~~~~~~~~~~------~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~   75 (199)
T 2xvm_A            5 IRDENYFTDKYELTRT------HSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKS   75 (199)
T ss_dssp             CCCTTHHHHHHTCCCC------CHHHHHHTT--TSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred             EechHHHhhhhccccc------cHHHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHH
Confidence            5668899998866432      233444443  23567999999999999999999977 99999999999999999988


Q ss_pred             hcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          103 LKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       103 ~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ..+.+++.+..+|+.++++ +++||+|++..+++++             ...+...+++++.++|+|||.++++++
T Consensus        76 ~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~-------------~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A           76 IENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMFL-------------EAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             HHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGGS-------------CGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhhC-------------CHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence            8887779999999988776 6789999999988876             334678899999999999999887654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.79  E-value=1.7e-19  Score=146.11  Aligned_cols=116  Identities=16%  Similarity=0.195  Sum_probs=94.6

Q ss_pred             HHHhhcc-cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc------------CCCCeEEEEc
Q 025039           48 FRHLVQP-HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK------------GYKEVKVLEA  114 (259)
Q Consensus        48 ~~~~l~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------~~~~v~~~~~  114 (259)
                      +..++.. .+.++.+|||+|||+|..+..+++.|. +|+|+|+|+.|++.|+++....            ...++++.++
T Consensus        11 l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   89 (203)
T 1pjz_A           11 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG   89 (203)
T ss_dssp             HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             HHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence            4444432 245788999999999999999999988 9999999999999999886531            1246899999


Q ss_pred             ccCCCcCCC-CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          115 DMLDLPFSN-DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       115 d~~~~~~~~-~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      |+.++++.+ ++||+|++..+++++             +..+...+++++.++|||||++++++
T Consensus        90 d~~~l~~~~~~~fD~v~~~~~l~~l-------------~~~~~~~~l~~~~r~LkpgG~~~l~~  140 (203)
T 1pjz_A           90 DFFALTARDIGHCAAFYDRAAMIAL-------------PADMRERYVQHLEALMPQACSGLLIT  140 (203)
T ss_dssp             CCSSSTHHHHHSEEEEEEESCGGGS-------------CHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ccccCCcccCCCEEEEEECcchhhC-------------CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            999988654 789999998888876             34567789999999999999955544

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.79  E-value=4.1e-19  Score=145.95  Aligned_cols=138  Identities=21%  Similarity=0.424  Sum_probs=101.5

Q ss_pred             CccchhhhcCCCCcccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc
Q 025039           25 DPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK  104 (259)
Q Consensus        25 ~~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~  104 (259)
                      ..+||+..+.......     ..+...+...++++.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++...
T Consensus         2 ~~~yw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~   75 (235)
T 3sm3_A            2 PESYWEKVSGKNIPSS-----LDLYPIIHNYLQEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSP   75 (235)
T ss_dssp             ---------------------CCCCTTHHHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCC
T ss_pred             chhHHHHHhhccCCCH-----HHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhc
Confidence            3578988876432111     112223444566889999999999999999999977 9999999999999999998776


Q ss_pred             CCC-----CeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          105 GYK-----EVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       105 ~~~-----~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++.     ++.+.++|+..+++++++||+|++..+++++            .+......+++++.++|+|||++++.++.
T Consensus        76 ~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~------------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (235)
T 3sm3_A           76 GLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSV------------PDPKERSRIIKEVFRVLKPGAYLYLVEFG  143 (235)
T ss_dssp             SCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEESCGGGC------------CCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             CCccccCcceEEEEecccccCCCCCceeEEEEcchhhcC------------CCHHHHHHHHHHHHHHcCCCeEEEEEECC
Confidence            652     4789999999888778899999999988877            24455669999999999999999998775


Q ss_pred             C
Q 025039          180 Q  180 (259)
Q Consensus       180 ~  180 (259)
                      .
T Consensus       144 ~  144 (235)
T 3sm3_A          144 Q  144 (235)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.78  E-value=6.3e-19  Score=145.48  Aligned_cols=140  Identities=19%  Similarity=0.305  Sum_probs=110.7

Q ss_pred             CccchhhhcCCCCccccc--ccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh
Q 025039           25 DPHYWDERFSDEEHYEWL--KDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL  102 (259)
Q Consensus        25 ~~~~w~~~~~~~~~~~w~--~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~  102 (259)
                      +.++|+++|..... .|.  .....+..++.....++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.+++++.
T Consensus        32 ~~~~w~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~  109 (235)
T 3lcc_A           32 EEGGWEKCWEEEIT-PWDQGRATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYG  109 (235)
T ss_dssp             HHHHHHHHHHTTCC-TTCCSSCCHHHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHhcCCC-CcccCCCCHHHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhh
Confidence            36799999976432 233  233455566654444556999999999999999988766 89999999999999999987


Q ss_pred             hcCC-CCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          103 LKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       103 ~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ..+. .++++.++|+.+++ +.++||+|++..+++++             ...+...+++++.++|+|||.+++..+..
T Consensus       110 ~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~-------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  174 (235)
T 3lcc_A          110 SSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAI-------------EPEMRPAWAKSMYELLKPDGELITLMYPI  174 (235)
T ss_dssp             TSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTS-------------CGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             ccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcC-------------CHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence            6432 35899999999876 45689999999988876             33577899999999999999999987754

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.77  E-value=1.5e-18  Score=145.31  Aligned_cols=108  Identities=19%  Similarity=0.319  Sum_probs=96.5

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      ..++.+|||+|||+|.++..+++.+. +++++|+|+.+++.+++++...+.+++.+.++|+.++++++++||+|++..++
T Consensus        35 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l  113 (260)
T 1vl5_A           35 LKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAA  113 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhh
Confidence            34788999999999999999999987 99999999999999999998888778999999999988888899999999998


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +++               .+...++.++.++|||||.+++.++.
T Consensus       114 ~~~---------------~d~~~~l~~~~r~LkpgG~l~~~~~~  142 (260)
T 1vl5_A          114 HHF---------------PNPASFVSEAYRVLKKGGQLLLVDNS  142 (260)
T ss_dssp             GGC---------------SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             Hhc---------------CCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            877               45679999999999999999997543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.77  E-value=2.8e-18  Score=139.63  Aligned_cols=141  Identities=17%  Similarity=0.294  Sum_probs=110.5

Q ss_pred             CCccchhhhcCCCCcccccccc---hHHHHhhccc--CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHH
Q 025039           24 LDPHYWDERFSDEEHYEWLKDY---SHFRHLVQPH--IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQ   98 (259)
Q Consensus        24 ~~~~~w~~~~~~~~~~~w~~~~---~~~~~~l~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~   98 (259)
                      .+.++|++.|...+.+.+...+   ..+..++...  ..++.+|||+|||+|..+..+++.+. +++++|+++.+++.++
T Consensus        12 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~   90 (216)
T 3ofk_A           12 NTYQSLERELANDDPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRAC   90 (216)
T ss_dssp             SHHHHHHHHHTSSSGGGTTTCHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHH
T ss_pred             chHHHHHHHhcCCCCcccccCHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHH
Confidence            3467899988775443332221   1233333322  34568999999999999999999986 9999999999999999


Q ss_pred             HHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039           99 ERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus        99 ~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +++...+  ++++.++|+.+++ ++++||+|++..+++++            .+......+++++.++|+|||.+++.++
T Consensus        91 ~~~~~~~--~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~------------~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A           91 QRTKRWS--HISWAATDILQFS-TAELFDLIVVAEVLYYL------------EDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             HHTTTCS--SEEEEECCTTTCC-CSCCEEEEEEESCGGGS------------SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HhcccCC--CeEEEEcchhhCC-CCCCccEEEEccHHHhC------------CCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            9987543  7999999999877 56899999999999887            2446678899999999999999999765


Q ss_pred             CC
Q 025039          179 GQ  180 (259)
Q Consensus       179 ~~  180 (259)
                      ..
T Consensus       156 ~~  157 (216)
T 3ofk_A          156 RD  157 (216)
T ss_dssp             CH
T ss_pred             CC
Confidence            43

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.76  E-value=2.3e-18  Score=144.50  Aligned_cols=135  Identities=19%  Similarity=0.257  Sum_probs=109.5

Q ss_pred             ccchhhhcCCCCcccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC
Q 025039           26 PHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG  105 (259)
Q Consensus        26 ~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~  105 (259)
                      .++|+..+.... ..|......+..++...++++.+|||+|||+|..+..+++.+. +++|+|+|+.+++.|++++.   
T Consensus        19 a~~yd~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~---   93 (263)
T 3pfg_A           19 AELYDLVHQGKG-KDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP---   93 (263)
T ss_dssp             HHHHHHHHHHTT-CCHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT---
T ss_pred             HHHHHHHhhcCC-CCHHHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC---
Confidence            567777775321 1233334456666666667789999999999999999999987 89999999999999998853   


Q ss_pred             CCCeEEEEcccCCCcCCCCceeEEEecc-eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          106 YKEVKVLEADMLDLPFSNDCFDVVIEKA-TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       106 ~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                        ++.++++|+.++++ +++||+|++.. +++++            .+..+...+++++.++|+|||.+++..+..
T Consensus        94 --~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~------------~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  154 (263)
T 3pfg_A           94 --DAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHL------------AGQAELDAALERFAAHVLPDGVVVVEPWWF  154 (263)
T ss_dssp             --TSEEEECCTTTCCC-SCCEEEEEECTTGGGGS------------CHHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             --CCEEEECChHHCCc-cCCcCEEEEcCchhhhc------------CCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence              68999999998876 67999999997 88877            355688899999999999999999976544

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.76  E-value=1.9e-18  Score=142.93  Aligned_cols=116  Identities=26%  Similarity=0.445  Sum_probs=100.4

Q ss_pred             hHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCc
Q 025039           46 SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDC  125 (259)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  125 (259)
                      ..+...+...++++.+|||+|||+|..+..+++.+. +++++|+++.+++.++++..   ..++.++++|+.++++++++
T Consensus        41 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~  116 (242)
T 3l8d_A           41 STIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE---GPDLSFIKGDLSSLPFENEQ  116 (242)
T ss_dssp             TTHHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC---BTTEEEEECBTTBCSSCTTC
T ss_pred             HHHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc---cCCceEEEcchhcCCCCCCC
Confidence            356666676777889999999999999999999977 99999999999999998752   24689999999998887889


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ||+|++..+++++               .+...+++++.++|+|||++++.++..
T Consensus       117 fD~v~~~~~l~~~---------------~~~~~~l~~~~~~L~pgG~l~i~~~~~  156 (242)
T 3l8d_A          117 FEAIMAINSLEWT---------------EEPLRALNEIKRVLKSDGYACIAILGP  156 (242)
T ss_dssp             EEEEEEESCTTSS---------------SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             ccEEEEcChHhhc---------------cCHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence            9999999988776               455689999999999999999987654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.76  E-value=6.9e-18  Score=138.04  Aligned_cols=122  Identities=25%  Similarity=0.356  Sum_probs=103.7

Q ss_pred             chHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCC
Q 025039           45 YSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSND  124 (259)
Q Consensus        45 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  124 (259)
                      ...+...+...++++.+|||+|||+|..+..+++.++ +++++|+|+.+++.+++++...+ .++++.++|+.+++++++
T Consensus        25 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~  102 (227)
T 1ve3_A           25 IETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFEDK  102 (227)
T ss_dssp             HHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCTT
T ss_pred             HHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCCCCC
Confidence            3445566666677789999999999999999999988 99999999999999999987766 579999999988777778


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      +||+|+++.++++.             +..+...+++++.++|+|||.+++.++...
T Consensus       103 ~~D~v~~~~~~~~~-------------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  146 (227)
T 1ve3_A          103 TFDYVIFIDSIVHF-------------EPLELNQVFKEVRRVLKPSGKFIMYFTDLR  146 (227)
T ss_dssp             CEEEEEEESCGGGC-------------CHHHHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             cEEEEEEcCchHhC-------------CHHHHHHHHHHHHHHcCCCcEEEEEecChH
Confidence            99999999885433             346788999999999999999999877643

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.76  E-value=3.2e-18  Score=141.85  Aligned_cols=110  Identities=17%  Similarity=0.246  Sum_probs=94.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      ++.+|||+|||+|..+..+++.+..+++++|+++.+++.+++++...+..++.+..+|+.++++++++||+|++..++++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  158 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH  158 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence            57899999999999999998887559999999999999999998766434588999999888777778999999998887


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +             .......+++++.++|+|||++++.++..
T Consensus       159 ~-------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  188 (241)
T 2ex4_A          159 L-------------TDQHLAEFLRRCKGSLRPNGIIVIKDNMA  188 (241)
T ss_dssp             S-------------CHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             C-------------CHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence            7             33456799999999999999999977543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.75  E-value=2.5e-18  Score=142.24  Aligned_cols=135  Identities=18%  Similarity=0.202  Sum_probs=96.2

Q ss_pred             CccchhhhcCCCCc-ccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh
Q 025039           25 DPHYWDERFSDEEH-YEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL  103 (259)
Q Consensus        25 ~~~~w~~~~~~~~~-~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~  103 (259)
                      +.+||+.....-.. .........+...+... .++.+|||+|||+|..+..+++.+. +++|+|+|+.+++.|++++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~   86 (250)
T 2p7i_A            9 DQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPF-FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD   86 (250)
T ss_dssp             --------------CHHHHTHHHHHHHHHGGG-CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS
T ss_pred             CHHHHhhHHHHhcCccchhhHHHHHHHHHHhh-cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC
Confidence            35677765544211 00011122344444433 3677999999999999999999988 899999999999999998653


Q ss_pred             cCCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHH-hcccCCcEEEEEecCCc
Q 025039          104 KGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVH-RVLKPDGLFISVSFGQP  181 (259)
Q Consensus       104 ~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~  181 (259)
                          ++.+.++|+.++ .++++||+|++..+++++               .+...+++++. ++|||||.+++.++...
T Consensus        87 ----~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~---------------~~~~~~l~~~~~~~LkpgG~l~i~~~~~~  145 (250)
T 2p7i_A           87 ----GITYIHSRFEDA-QLPRRYDNIVLTHVLEHI---------------DDPVALLKRINDDWLAEGGRLFLVCPNAN  145 (250)
T ss_dssp             ----CEEEEESCGGGC-CCSSCEEEEEEESCGGGC---------------SSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred             ----CeEEEEccHHHc-CcCCcccEEEEhhHHHhh---------------cCHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence                689999999887 356899999999999877               35579999999 99999999999886653

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.75  E-value=8.5e-18  Score=140.27  Aligned_cols=107  Identities=21%  Similarity=0.298  Sum_probs=96.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|..+..+++.++.+++|+|+|+.+++.+++++...++++ +++.++|+.++++++++||+|++..+
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  123 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGA  123 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecCh
Confidence            45778999999999999999999976699999999999999999999888766 99999999988888889999999998


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ++++                +...+++++.++|+|||++++.++
T Consensus       124 l~~~----------------~~~~~l~~~~~~L~pgG~l~~~~~  151 (257)
T 3f4k_A          124 IYNI----------------GFERGMNEWSKYLKKGGFIAVSEA  151 (257)
T ss_dssp             SCCC----------------CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             Hhhc----------------CHHHHHHHHHHHcCCCcEEEEEEe
Confidence            8765                356899999999999999999874

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.75  E-value=4e-18  Score=142.11  Aligned_cols=104  Identities=21%  Similarity=0.269  Sum_probs=93.1

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      ++.+|||+|||+|..+..+++.+..+++|+|+|+.+++.+++++.   ..++.+.++|+.++++++++||+|++..++++
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  120 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEPDAYNVVLSSLALHY  120 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCTTCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCCCCeEEEEEchhhhh
Confidence            678999999999999999999987689999999999999999876   24689999999988887889999999998887


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +               .+...+++++.++|+|||.+++....
T Consensus       121 ~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~  147 (253)
T 3g5l_A          121 I---------------ASFDDICKKVYINLKSSGSFIFSVEH  147 (253)
T ss_dssp             C---------------SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             h---------------hhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            6               45689999999999999999997654

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.75  E-value=5.2e-18  Score=140.50  Aligned_cols=109  Identities=24%  Similarity=0.337  Sum_probs=98.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.++.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++...+.+++.+.++|+.++++++++||+|++..++
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l   97 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAA   97 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCch
Confidence            56789999999999999999999987 99999999999999999998888778999999999888888899999999888


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +++               .+...++.++.++|+|||.+++.++..
T Consensus        98 ~~~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           98 HHF---------------SDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             GGC---------------SCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             hhc---------------cCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            776               356789999999999999999986543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.75  E-value=4.7e-18  Score=144.24  Aligned_cols=116  Identities=17%  Similarity=0.306  Sum_probs=99.1

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCc-CCCCc
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP-FSNDC  125 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~-~~~~~  125 (259)
                      +..++.....++.+|||+|||+|..+..+++.+. +++|+|+|+.+++.+++++...++ +++.++++|+.+++ +.+++
T Consensus        58 l~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  136 (285)
T 4htf_A           58 LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETP  136 (285)
T ss_dssp             HHHHHHHTCSSCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSC
T ss_pred             HHHHHHhcCCCCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCC
Confidence            3344544445578999999999999999999977 999999999999999999988887 46999999998876 66789


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ||+|++..+++++               .+...+++++.++|+|||++++..+.
T Consensus       137 fD~v~~~~~l~~~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~  175 (285)
T 4htf_A          137 VDLILFHAVLEWV---------------ADPRSVLQTLWSVLRPGGVLSLMFYN  175 (285)
T ss_dssp             EEEEEEESCGGGC---------------SCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             ceEEEECchhhcc---------------cCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence            9999999999876               35578999999999999999998764

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.75  E-value=5.9e-18  Score=137.88  Aligned_cols=110  Identities=23%  Similarity=0.334  Sum_probs=98.4

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..+..+++.+ +. +++++|+++.+++.+++++...+++++.+..+|+.++++++++||+|++..
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  114 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAF  114 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEES
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeeh
Confidence            4578899999999999999999986 43 999999999999999999988888789999999998887788999999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +++++               .+...+++++.++|+|||.+++.++..
T Consensus       115 ~l~~~---------------~~~~~~l~~~~~~LkpgG~l~i~~~~~  146 (219)
T 3dh0_A          115 TFHEL---------------SEPLKFLEELKRVAKPFAYLAIIDWKK  146 (219)
T ss_dssp             CGGGC---------------SSHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             hhhhc---------------CCHHHHHHHHHHHhCCCeEEEEEEecc
Confidence            98776               456789999999999999999987653

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.74  E-value=8.7e-18  Score=143.34  Aligned_cols=109  Identities=19%  Similarity=0.379  Sum_probs=96.9

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      .+.++.+|||+|||+|..+..+++. +. +++|+|+|+.+++.+++++...++. ++++.++|+.++++++++||+|++.
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  157 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ  157 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEec
Confidence            3467889999999999999999987 65 9999999999999999998887764 5999999999988888899999999


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .+++++               .+...+++++.++|||||++++.++.
T Consensus       158 ~~l~~~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~  189 (297)
T 2o57_A          158 DAFLHS---------------PDKLKVFQECARVLKPRGVMAITDPM  189 (297)
T ss_dssp             SCGGGC---------------SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhhc---------------CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence            998877               34689999999999999999998764

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.74  E-value=7.9e-18  Score=142.07  Aligned_cols=118  Identities=31%  Similarity=0.470  Sum_probs=101.7

Q ss_pred             hHHHHhhcc--cCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC
Q 025039           46 SHFRHLVQP--HIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS  122 (259)
Q Consensus        46 ~~~~~~l~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~  122 (259)
                      ..+..++..  .+.++.+|||+|||+|..+..+++.++. +++++|+++.+++.+++++...+.+++.+..+|+.+++++
T Consensus        23 ~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~  102 (276)
T 3mgg_A           23 ETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFE  102 (276)
T ss_dssp             CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSC
T ss_pred             HHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCC
Confidence            344555443  3467899999999999999999998654 9999999999999999999888887899999999998887


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +++||+|++..+++++               .+...+++++.++|+|||++++.+.
T Consensus       103 ~~~fD~v~~~~~l~~~---------------~~~~~~l~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A          103 DSSFDHIFVCFVLEHL---------------QSPEEALKSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             TTCEEEEEEESCGGGC---------------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCeeEEEEechhhhc---------------CCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            8899999999998876               3456899999999999999999764

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.74  E-value=2.2e-17  Score=134.49  Aligned_cols=109  Identities=20%  Similarity=0.279  Sum_probs=94.5

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-----CeEEEEcccCCCcCCCCceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-----EVKVLEADMLDLPFSNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~fD~V~  130 (259)
                      .++.+|||+|||+|.++..+++.++. +++|+|+|+.+++.+++++...+++     ++.+.++|+...+.+.++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  107 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT  107 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence            36789999999999999999998764 9999999999999999998877665     69999999977666667999999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +..+++++             ...+...+++++.++|||||++++...
T Consensus       108 ~~~~l~~~-------------~~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A          108 VIEVIEHL-------------DLSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             EESCGGGC-------------CHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             eHHHHHcC-------------CHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence            99999887             445678999999999999997776543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.74  E-value=2.4e-18  Score=144.72  Aligned_cols=143  Identities=20%  Similarity=0.251  Sum_probs=104.8

Q ss_pred             CCCccchhhhcCCCCcc-------cccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHH
Q 025039           23 YLDPHYWDERFSDEEHY-------EWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVE   95 (259)
Q Consensus        23 ~~~~~~w~~~~~~~~~~-------~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~   95 (259)
                      |....||+..|......       .|..  ..+..++.....++.+|||+|||+|..+..++..+..+|+|+|+|+.|++
T Consensus        15 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~   92 (263)
T 2a14_A           15 FLPRDYLATYYSFDGSPSPEAEMLKFNL--ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNRE   92 (263)
T ss_dssp             CCHHHHHHHHCCCCCSCCHHHHHHHHHH--HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHH
T ss_pred             cCHHHHHHHhcCCCcccchhhHHHHHHH--HHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHH
Confidence            45578999988764322       1221  23334443344567899999999999988888777658999999999999


Q ss_pred             HHHHHHhhcC--C---------------------------CCeE-EEEcccCCC-cC---CCCceeEEEecceeeeeeeC
Q 025039           96 KMQERLLLKG--Y---------------------------KEVK-VLEADMLDL-PF---SNDCFDVVIEKATMEVLFVN  141 (259)
Q Consensus        96 ~a~~~~~~~~--~---------------------------~~v~-~~~~d~~~~-~~---~~~~fD~V~~~~~l~~~~~~  141 (259)
                      .|+++++...  +                           .++. +.++|+.+. ++   ..++||+|+++.+++++.  
T Consensus        93 ~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~--  170 (263)
T 2a14_A           93 ELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC--  170 (263)
T ss_dssp             HHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC--
T ss_pred             HHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhc--
Confidence            9998765431  0                           0233 788998873 32   256899999999998752  


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          142 SGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                               .+.++...+++++.++|||||.|++.+.
T Consensus       171 ---------~~~~~~~~~l~~i~r~LKPGG~li~~~~  198 (263)
T 2a14_A          171 ---------CSLDAYRAALCNLASLLKPGGHLVTTVT  198 (263)
T ss_dssp             ---------SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ---------CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence                     1346788999999999999999999864

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.74  E-value=1.9e-17  Score=134.95  Aligned_cols=103  Identities=21%  Similarity=0.282  Sum_probs=90.6

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      ++.+|||+|||+|..+..+++.+. +++|+|+++.+++.+++++.    .++.+.++|+.+++.+ ++||+|++..++++
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~  118 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP-TSIDTIVSTYAFHH  118 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC-SCCSEEEEESCGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC-CCeEEEEECcchhc
Confidence            678999999999999999999977 99999999999999999865    3689999999998876 89999999999988


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +             .......+++++.++|||||.+++.++.
T Consensus       119 ~-------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~  147 (220)
T 3hnr_A          119 L-------------TDDEKNVAIAKYSQLLNKGGKIVFADTI  147 (220)
T ss_dssp             S-------------CHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             C-------------ChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            7             3344456999999999999999998744

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.74  E-value=1.3e-17  Score=134.41  Aligned_cols=104  Identities=16%  Similarity=0.222  Sum_probs=92.7

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL  138 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~  138 (259)
                      +.+|||+|||+|..+..+++.+. +++|+|+++.+++.++++.     +++.++++|+.++++++++||+|++..+++++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  115 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH-----PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHM  115 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGGGSCCCEEEEEEESSSTTC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC-----CCCeEEeCcccccccCCCCeEEEEehhhHhcC
Confidence            78999999999999999999977 9999999999999999873     47899999999888778899999999988876


Q ss_pred             eeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          139 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                                   ..++...+++++.++|+|||.+++..+...
T Consensus       116 -------------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  145 (203)
T 3h2b_A          116 -------------GPGELPDALVALRMAVEDGGGLLMSFFSGP  145 (203)
T ss_dssp             -------------CTTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred             -------------CHHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence                         234778999999999999999999876654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.74  E-value=1.8e-17  Score=138.64  Aligned_cols=109  Identities=20%  Similarity=0.347  Sum_probs=96.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|..+..+++. +. +|+|+|+|+.+++.+++++...  +++++.++|+.++++++++||+|++..+
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~  129 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFPENNFDLIYSRDA  129 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCCTTCEEEEEEESC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCCCCcEEEEeHHHH
Confidence            457789999999999999999997 55 9999999999999999987654  5799999999998887889999999999


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++++             +..+...+++++.++|+|||.+++.++..
T Consensus       130 l~~~-------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  162 (266)
T 3ujc_A          130 ILAL-------------SLENKNKLFQKCYKWLKPTGTLLITDYCA  162 (266)
T ss_dssp             GGGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             HHhc-------------ChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            8876             44788999999999999999999987643

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.74  E-value=2.2e-17  Score=131.12  Aligned_cols=124  Identities=13%  Similarity=0.128  Sum_probs=94.3

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-CCCCce
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCF  126 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~f  126 (259)
                      ...++...+.++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.|++++...+++++++++.+...+. +.+++|
T Consensus        12 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~f   90 (185)
T 3mti_A           12 SHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPI   90 (185)
T ss_dssp             HHHHHHTTCCTTCEEEESCCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCE
T ss_pred             HHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCc
Confidence            3445556677899999999999999999999855 99999999999999999999888877999987776643 346789


Q ss_pred             eEEEecc-eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          127 DVVIEKA-TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       127 D~V~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |+|+++. .+...    ...+   .........+++++.++|||||.++++.+.
T Consensus        91 D~v~~~~~~~~~~----~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           91 RAAIFNLGYLPSA----DKSV---ITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             EEEEEEEC------------------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             CEEEEeCCCCCCc----chhc---ccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            9998762 22110    0000   012356678899999999999999998775

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.74  E-value=1.2e-17  Score=140.63  Aligned_cols=109  Identities=27%  Similarity=0.423  Sum_probs=95.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|..+..+++....+++++|+|+.+++.+++++...+.+ ++.+..+|+.++++++++||+|++..+
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  138 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALES  138 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEech
Confidence            3578899999999999999998864339999999999999999998887765 499999999998888889999999998


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++++               .+...+++++.++|+|||.+++.++.
T Consensus       139 l~~~---------------~~~~~~l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A          139 LHHM---------------PDRGRALREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             TTTS---------------SCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             hhhC---------------CCHHHHHHHHHHHcCCCeEEEEEEee
Confidence            8776               34578999999999999999998754

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.74  E-value=1.4e-17  Score=142.47  Aligned_cols=119  Identities=19%  Similarity=0.286  Sum_probs=97.7

Q ss_pred             HhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC---CCeEEEEcccCCCcCCCCce
Q 025039           50 HLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY---KEVKVLEADMLDLPFSNDCF  126 (259)
Q Consensus        50 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~~f  126 (259)
                      .++.....++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.+++++...+.   .+++++++|+.++++ +++|
T Consensus        74 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~f  151 (299)
T 3g2m_A           74 EFATRTGPVSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRF  151 (299)
T ss_dssp             HHHHHHCCCCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCE
T ss_pred             HHHHhhCCCCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCc
Confidence            33333334456999999999999999999987 899999999999999999887653   469999999999876 5789


Q ss_pred             eEEEec-ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccc
Q 025039          127 DVVIEK-ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF  183 (259)
Q Consensus       127 D~V~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  183 (259)
                      |+|++. .+++++             +..+...+++++.++|+|||.|++.++.....
T Consensus       152 D~v~~~~~~~~~~-------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  196 (299)
T 3g2m_A          152 GTVVISSGSINEL-------------DEADRRGLYASVREHLEPGGKFLLSLAMSEAA  196 (299)
T ss_dssp             EEEEECHHHHTTS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred             CEEEECCcccccC-------------CHHHHHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence            998865 555544             44678899999999999999999998876543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.74  E-value=1.5e-17  Score=139.76  Aligned_cols=107  Identities=19%  Similarity=0.297  Sum_probs=95.7

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|..+..+++.+..+|+|+|+|+.+++.+++++...++++ +++.++|+.++++++++||+|++..+
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~  123 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA  123 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence            46789999999999999999999854499999999999999999998888754 99999999998877889999999998


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ++++                +...+++++.++|+|||++++.++
T Consensus       124 ~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          124 IYNI----------------GFERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             GGGT----------------CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             ceec----------------CHHHHHHHHHHHcCCCCEEEEEEe
Confidence            8765                457899999999999999999875

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.73  E-value=2.2e-17  Score=140.22  Aligned_cols=105  Identities=18%  Similarity=0.265  Sum_probs=94.4

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      ++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.+++++...++ ++++.++|+.+.+. .++||+|+++.++++
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~  196 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI-QENYDFIVSTVVFMF  196 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC-CSCEEEEEECSSGGG
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc-cCCccEEEEccchhh
Confidence            678999999999999999999987 999999999999999999988886 89999999988776 678999999999987


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +             +.+....+++++.++|+|||.++++..
T Consensus       197 ~-------------~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          197 L-------------NRERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             S-------------CGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             C-------------CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            7             445678999999999999999887654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.73  E-value=1.9e-17  Score=138.00  Aligned_cols=107  Identities=21%  Similarity=0.238  Sum_probs=93.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|..+..+++....+++|+|+|+.+++.+++++...++. ++.+.++|+.++++ +++||+|++..+
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~  112 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGA  112 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEESC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECCC
Confidence            4678899999999999999999874339999999999999999999888775 69999999998876 689999999888


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ++++               .+...+++++.++|||||.+++.+.
T Consensus       113 ~~~~---------------~~~~~~l~~~~r~LkpgG~l~~~~~  141 (256)
T 1nkv_A          113 TWIA---------------GGFAGAEELLAQSLKPGGIMLIGEP  141 (256)
T ss_dssp             GGGT---------------SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             hHhc---------------CCHHHHHHHHHHHcCCCeEEEEecC
Confidence            8765               3567899999999999999999764

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.73  E-value=3.2e-17  Score=134.94  Aligned_cols=109  Identities=25%  Similarity=0.351  Sum_probs=95.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      ..++.+|||+|||+|..+..+++..+. +++++|+|+.+++.+++++...+  ++.+.++|+.+++++ ++||+|++..+
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~-~~fD~v~~~~~  118 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE-EKYDMVVSALS  118 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC-SCEEEEEEESC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC-CCceEEEEeCc
Confidence            456789999999999999999998544 99999999999999999987654  799999999998866 89999999999


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++++             ......++++++.++|+|||.+++.++..
T Consensus       119 l~~~-------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  151 (234)
T 3dtn_A          119 IHHL-------------EDEDKKELYKRSYSILKESGIFINADLVH  151 (234)
T ss_dssp             GGGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             cccC-------------CHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            9887             34555689999999999999999987654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.73  E-value=3.4e-17  Score=133.51  Aligned_cols=109  Identities=19%  Similarity=0.320  Sum_probs=93.9

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-----CeEEEEcccCCCcCCCCceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-----EVKVLEADMLDLPFSNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~fD~V~  130 (259)
                      .++.+|||+|||+|..+..+++.++. +++|+|+|+.+++.+++++...+++     ++++.++|+...+...++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT  107 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence            36789999999999999999998764 9999999999999999998776654     68999999977776678999999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +..+++++             ...+...+++++.++|+|||+++....
T Consensus       108 ~~~~l~~~-------------~~~~~~~~l~~~~~~LkpgG~~i~~~~  142 (219)
T 3jwg_A          108 VIEVIEHL-------------DENRLQAFEKVLFEFTRPQTVIVSTPN  142 (219)
T ss_dssp             EESCGGGC-------------CHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             EHHHHHhC-------------CHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence            99999887             445668999999999999997766543

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.73  E-value=1.8e-17  Score=137.88  Aligned_cols=107  Identities=17%  Similarity=0.233  Sum_probs=94.4

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .++.+|||+|||+|..+..+++.+..+++++|+++.+++.+++++...  +++.+.++|+.++++++++||+|++..+++
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  169 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPPNTYDLIVIQWTAI  169 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCCCCCCeEEEEEcchhh
Confidence            467899999999999999999887548999999999999999987654  468999999988887778999999999988


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ++             ...+...+++++.++|+|||++++.+.
T Consensus       170 ~~-------------~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          170 YL-------------TDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             GS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hC-------------CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            76             346788999999999999999999875

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.72  E-value=3.6e-17  Score=136.72  Aligned_cols=105  Identities=24%  Similarity=0.364  Sum_probs=93.1

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .+.++.+|||+|||+|..+..+++.+. +++|+|+|+.+++.+++++ ....+++.+.++|+.++++++++||+|++..+
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  113 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVHL  113 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEESC
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECCc
Confidence            456788999999999999999999876 9999999999999999987 33445799999999888877889999999998


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ++++               .+...+++++.++|+|||.+++.
T Consensus       114 l~~~---------------~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          114 WHLV---------------PDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             GGGC---------------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhc---------------CCHHHHHHHHHHHCCCCcEEEEE
Confidence            8876               45678999999999999999987

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.72  E-value=1.8e-17  Score=134.48  Aligned_cols=105  Identities=16%  Similarity=0.301  Sum_probs=92.6

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      +.+|||+|||+|..+..+++....+++++|+++.+++.+++++...+.. ++++.++|+.++++++++||+|++..++++
T Consensus        44 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~  123 (219)
T 3dlc_A           44 AGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF  123 (219)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred             CCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence            3499999999999999999882229999999999999999999888765 599999999998888889999999998887


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +               .+...+++++.++|+|||.+++.+.
T Consensus       124 ~---------------~~~~~~l~~~~~~L~pgG~l~~~~~  149 (219)
T 3dlc_A          124 W---------------EDVATAFREIYRILKSGGKTYIGGG  149 (219)
T ss_dssp             C---------------SCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             c---------------cCHHHHHHHHHHhCCCCCEEEEEec
Confidence            6               4567899999999999999999753

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.72  E-value=4.9e-17  Score=132.05  Aligned_cols=114  Identities=19%  Similarity=0.223  Sum_probs=96.6

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCcee
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFD  127 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  127 (259)
                      +...+. .+.++.+|||+|||+|..+..+++.+. +++++|+++.+++.+++    .+.+++.+.++|+.++ +++++||
T Consensus        37 ~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~-~~~~~~D  109 (218)
T 3ou2_A           37 ALERLR-AGNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW-TPDRQWD  109 (218)
T ss_dssp             HHHHHT-TTTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC-CCSSCEE
T ss_pred             HHHHHh-cCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC-CCCCcee
Confidence            334433 355678999999999999999999977 99999999999999987    3546799999999887 5678999


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      +|++..+++++             ..+....+++++.++|+|||.+++.++..+
T Consensus       110 ~v~~~~~l~~~-------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  150 (218)
T 3ou2_A          110 AVFFAHWLAHV-------------PDDRFEAFWESVRSAVAPGGVVEFVDVTDH  150 (218)
T ss_dssp             EEEEESCGGGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             EEEEechhhcC-------------CHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence            99999999887             334568999999999999999999987763

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.72  E-value=4.2e-17  Score=134.74  Aligned_cols=118  Identities=18%  Similarity=0.228  Sum_probs=99.5

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCcee
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFD  127 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  127 (259)
                      +..++.....++.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++...+. ++.+.++|+.+++++ ++||
T Consensus        27 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~-~~fD  103 (246)
T 1y8c_A           27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN-RKFD  103 (246)
T ss_dssp             HHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS-CCEE
T ss_pred             HHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCcc-CCce
Confidence            4444444434678999999999999999999977 899999999999999999887664 789999999887766 7899


Q ss_pred             EEEecc-eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          128 VVIEKA-TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       128 ~V~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +|++.. +++++            .+..+...+++++.++|+|||.+++..+..
T Consensus       104 ~v~~~~~~l~~~------------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (246)
T 1y8c_A          104 LITCCLDSTNYI------------IDSDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             EEEECTTGGGGC------------CSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             EEEEcCcccccc------------CCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence            999998 88876            244678899999999999999999866543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.72  E-value=1.1e-16  Score=131.27  Aligned_cols=151  Identities=14%  Similarity=0.096  Sum_probs=121.7

Q ss_pred             hhcccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeE
Q 025039           51 LVQPHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDV  128 (259)
Q Consensus        51 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~  128 (259)
                      .+..+++++.+|||+|||+|.+++.++..++. +|+++|+++.+++.|+++++.+++.+ +++.++|..+...+.+.||+
T Consensus        14 ~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~   93 (230)
T 3lec_A           14 KVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDT   93 (230)
T ss_dssp             HHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCE
T ss_pred             HHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCE
Confidence            34557788899999999999999999999876 89999999999999999999999865 99999999885544447999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEE
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHY  208 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (259)
                      |+..++.                 -....+++....+.|+++|.|++...........++...+|....+.....++..|
T Consensus        94 IviaGmG-----------------g~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~~~Gf~i~~E~lv~e~~~~Y  156 (230)
T 3lec_A           94 ITICGMG-----------------GRLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLAANDFEIVAEDILTENDKRY  156 (230)
T ss_dssp             EEEEEEC-----------------HHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHTTEEEEEEEEEEC--CEE
T ss_pred             EEEeCCc-----------------hHHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHHHCCCEEEEEEEEEECCEEE
Confidence            8865542                 25577899999999999999999887666566667777877777777667777777


Q ss_pred             EEEEEEeCCC
Q 025039          209 FFYILRKGKR  218 (259)
Q Consensus       209 ~~~~~~~~~~  218 (259)
                      ....+.++..
T Consensus       157 eii~~~~~~~  166 (230)
T 3lec_A          157 EILVVKHGHM  166 (230)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEeCCC
Confidence            7777776643

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.72  E-value=4.6e-17  Score=131.53  Aligned_cols=113  Identities=20%  Similarity=0.314  Sum_probs=95.5

Q ss_pred             cCCCCCcEEEEcCCCCcch-HHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           55 HIKPNSSVLELGCGNSRLS-EGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~-~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      ...++.+|||+|||+|..+ ..++..+. +++++|+|+.+++.+++++...+ .++.+.++|+.++++++++||+|++..
T Consensus        20 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~   97 (209)
T 2p8j_A           20 ESNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPFKDESMSFVYSYG   97 (209)
T ss_dssp             HSSSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCSCTTCEEEEEECS
T ss_pred             ccCCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCCCCCceeEEEEcC
Confidence            3456789999999999985 45555565 99999999999999999987666 468899999998887778999999998


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      +++++             ...+...+++++.++|+|||++++.+++.+.
T Consensus        98 ~l~~~-------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  133 (209)
T 2p8j_A           98 TIFHM-------------RKNDVKEAIDEIKRVLKPGGLACINFLTTKD  133 (209)
T ss_dssp             CGGGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEEETTS
T ss_pred             hHHhC-------------CHHHHHHHHHHHHHHcCCCcEEEEEEecccc
Confidence            88776             3478889999999999999999998876543

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.72  E-value=1.5e-17  Score=137.97  Aligned_cols=112  Identities=14%  Similarity=0.131  Sum_probs=93.9

Q ss_pred             cccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC-----Ccee
Q 025039           53 QPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN-----DCFD  127 (259)
Q Consensus        53 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~fD  127 (259)
                      ...+.++.+|||+|||+|..+..+++.+. +|+++|+|+.+++.+++++..   .+++++++|+.+++...     ..||
T Consensus        51 ~~~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~d  126 (245)
T 3ggd_A           51 ELLFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA---ANISYRLLDGLVPEQAAQIHSEIGDA  126 (245)
T ss_dssp             TTTSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC---TTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred             hhccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc---cCceEEECcccccccccccccccCcc
Confidence            34467789999999999999999999988 999999999999999998732   36899999998854321     2489


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      +|++..+++++             ...+...+++++.++|||||++++.++...
T Consensus       127 ~v~~~~~~~~~-------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  167 (245)
T 3ggd_A          127 NIYMRTGFHHI-------------PVEKRELLGQSLRILLGKQGAMYLIELGTG  167 (245)
T ss_dssp             EEEEESSSTTS-------------CGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred             EEEEcchhhcC-------------CHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            99999988876             334778999999999999999999887643

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.72  E-value=3.4e-17  Score=132.76  Aligned_cols=111  Identities=23%  Similarity=0.373  Sum_probs=95.0

Q ss_pred             HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCce
Q 025039           47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCF  126 (259)
Q Consensus        47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  126 (259)
                      .+..++. .++++.+|||+|||+|..+..+++.+. +++++|+|+.+++.+++++      ++.+..+|+..++ .+++|
T Consensus        33 ~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~-~~~~f  103 (211)
T 3e23_A           33 TLTKFLG-ELPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL------GRPVRTMLFHQLD-AIDAY  103 (211)
T ss_dssp             HHHHHHT-TSCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH------TSCCEECCGGGCC-CCSCE
T ss_pred             HHHHHHH-hcCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc------CCceEEeeeccCC-CCCcE
Confidence            3444443 466789999999999999999999977 9999999999999999986      4567788888877 67899


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |+|++..+++++             ..++...+++++.++|+|||++++....
T Consensus       104 D~v~~~~~l~~~-------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A          104 DAVWAHACLLHV-------------PRDELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             EEEEECSCGGGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEecCchhhc-------------CHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            999999999887             4468889999999999999999998654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.72  E-value=4.6e-17  Score=129.61  Aligned_cols=112  Identities=21%  Similarity=0.333  Sum_probs=94.8

Q ss_pred             HhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEE
Q 025039           50 HLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVV  129 (259)
Q Consensus        50 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V  129 (259)
                      .++...++++.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++     +++.+.++|+.++++++++||+|
T Consensus        38 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~~D~i  111 (195)
T 3cgg_A           38 RLIDAMAPRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQISETDFDLI  111 (195)
T ss_dssp             HHHHHHSCTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCCCCCCEEEE
T ss_pred             HHHHHhccCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCCCCCceeEE
Confidence            34455567889999999999999999999876 9999999999999999875     35889999998877777899999


Q ss_pred             Eec-ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          130 IEK-ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       130 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++. .+++++             ...+...+++++.++|+|||.+++.....
T Consensus       112 ~~~~~~~~~~-------------~~~~~~~~l~~~~~~l~~~G~l~~~~~~~  150 (195)
T 3cgg_A          112 VSAGNVMGFL-------------AEDGREPALANIHRALGADGRAVIGFGAG  150 (195)
T ss_dssp             EECCCCGGGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             EECCcHHhhc-------------ChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            998 566654             34677899999999999999999976554

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.72  E-value=4.2e-17  Score=130.21  Aligned_cols=110  Identities=12%  Similarity=0.133  Sum_probs=94.1

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~  134 (259)
                      .++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.+++++...++++++++++|+.++.  +++++||+|+++.+
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p  122 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP  122 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence            4678999999999999998888876689999999999999999999888877999999998753  34678999999887


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHh--cccCCcEEEEEecCC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHR--VLKPDGLFISVSFGQ  180 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~  180 (259)
                      +++.              ..+...++..+.+  +|+|||++++.....
T Consensus       123 ~~~~--------------~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          123 YNVD--------------SADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             TTSC--------------HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             CCcc--------------hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            6432              2677889999999  999999999976554

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.71  E-value=2e-17  Score=140.77  Aligned_cols=140  Identities=19%  Similarity=0.281  Sum_probs=103.3

Q ss_pred             ccchhhhcCCCCcccccccchHHHHhhcccC--CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh
Q 025039           26 PHYWDERFSDEEHYEWLKDYSHFRHLVQPHI--KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL  103 (259)
Q Consensus        26 ~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~  103 (259)
                      .++|+..+.....     ....+...+...+  .++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.|++++..
T Consensus        28 ~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~  101 (293)
T 3thr_A           28 ARVWQLYIGDTRS-----RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWN  101 (293)
T ss_dssp             HHHHHHHHTCCSC-----BCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcc-----hHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhh
Confidence            4578777643221     1222223332222  3678999999999999999999988 999999999999999987633


Q ss_pred             cC----CCCeEEEEcccCCCc---CCCCceeEEEec-ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          104 KG----YKEVKVLEADMLDLP---FSNDCFDVVIEK-ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       104 ~~----~~~v~~~~~d~~~~~---~~~~~fD~V~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                      .+    ..++.+..+|+.+++   +++++||+|+|. .+++++...        ....++...+++++.++|||||++++
T Consensus       102 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~--------~~~~~~~~~~l~~~~~~LkpgG~l~~  173 (293)
T 3thr_A          102 RRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDS--------KGDQSEHRLALKNIASMVRPGGLLVI  173 (293)
T ss_dssp             TTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCS--------SSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCcc--------ccCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            22    235788899988876   677899999998 788777110        00136688999999999999999999


Q ss_pred             EecC
Q 025039          176 VSFG  179 (259)
Q Consensus       176 ~~~~  179 (259)
                      ..++
T Consensus       174 ~~~~  177 (293)
T 3thr_A          174 DHRN  177 (293)
T ss_dssp             EEEC
T ss_pred             EeCC
Confidence            8754

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.71  E-value=1.6e-16  Score=130.46  Aligned_cols=127  Identities=12%  Similarity=0.118  Sum_probs=95.0

Q ss_pred             hcccCCCCCcEEEEcCC-CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-cCCCCceeE
Q 025039           52 VQPHIKPNSSVLELGCG-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-PFSNDCFDV  128 (259)
Q Consensus        52 l~~~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~  128 (259)
                      +...++++.+|||+||| +|..+..+++. +. +|+++|+++.+++.|++++...+. +++++++|+..+ ++++++||+
T Consensus        49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~fD~  126 (230)
T 3evz_A           49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVVEGTFDV  126 (230)
T ss_dssp             HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTCCSCEEE
T ss_pred             hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcccCceeE
Confidence            34556788999999999 99999999998 44 999999999999999999998887 899999997543 344578999


Q ss_pred             EEecceeeeeeeC----CCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          129 VIEKATMEVLFVN----SGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       129 V~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      |+++.++...-..    ....|............+++.+.++|+|||+++++....
T Consensus       127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (230)
T 3evz_A          127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK  182 (230)
T ss_dssp             EEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred             EEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence            9998877543110    000011111223445889999999999999999976554

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.71  E-value=8.5e-17  Score=136.84  Aligned_cols=117  Identities=22%  Similarity=0.282  Sum_probs=99.7

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcC-CCCceeEEEe
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPF-SNDCFDVVIE  131 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~-~~~~fD~V~~  131 (259)
                      ..+.++.+|||+|||+|..+..+++.+..+++|+|+|+.+++.+++++...+.. ++.+.++|+.+.++ ++++||+|++
T Consensus        60 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~  139 (298)
T 1ri5_A           60 LYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISS  139 (298)
T ss_dssp             HHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             HhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEE
Confidence            445788999999999999999998887559999999999999999998877653 48999999998776 5789999999


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      ..++++.+           .+..+...+++++.++|+|||.+++.++...
T Consensus       140 ~~~l~~~~-----------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  178 (298)
T 1ri5_A          140 QFSFHYAF-----------STSESLDIAQRNIARHLRPGGYFIMTVPSRD  178 (298)
T ss_dssp             ESCGGGGG-----------SSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             Cchhhhhc-----------CCHHHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            98887631           1457889999999999999999999887643

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.71  E-value=1.8e-16  Score=129.65  Aligned_cols=149  Identities=17%  Similarity=0.157  Sum_probs=118.7

Q ss_pred             hcccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-CcCCCCceeE
Q 025039           52 VQPHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-LPFSNDCFDV  128 (259)
Q Consensus        52 l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~fD~  128 (259)
                      +...++++.+|||+|||+|.+++.++..++. +|+++|+++.+++.|+++++.+++.+ +++..+|..+ ++ +...||+
T Consensus         9 l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~-~~~~~D~   87 (225)
T 3kr9_A            9 VASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE-ETDQVSV   87 (225)
T ss_dssp             HHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC-GGGCCCE
T ss_pred             HHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcc-cCcCCCE
Confidence            3456778899999999999999999999876 89999999999999999999999875 9999999865 32 2236999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEE
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHY  208 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (259)
                      |+..++-                 -....+++......|+|+|++++...........++...+|....+.....++..|
T Consensus        88 IviaG~G-----------------g~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~~~Gf~i~~e~lv~e~~~~Y  150 (225)
T 3kr9_A           88 ITIAGMG-----------------GRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQDHGFQIVAESILEEAGKFY  150 (225)
T ss_dssp             EEEEEEC-----------------HHHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHHHTTEEEEEEEEEEETTEEE
T ss_pred             EEEcCCC-----------------hHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCEEE
Confidence            8865542                 24568899999999999999999776555555566777777766666666677777


Q ss_pred             EEEEEEeCCC
Q 025039          209 FFYILRKGKR  218 (259)
Q Consensus       209 ~~~~~~~~~~  218 (259)
                      ....+.++..
T Consensus       151 eii~~~~~~~  160 (225)
T 3kr9_A          151 EILVVEAGQM  160 (225)
T ss_dssp             EEEEEEESCC
T ss_pred             EEEEEEeCCC
Confidence            7777776643

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.71  E-value=2.6e-17  Score=137.72  Aligned_cols=145  Identities=13%  Similarity=0.179  Sum_probs=105.2

Q ss_pred             CCCccchhhhcCCCCcccc---cccc--hHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHH
Q 025039           23 YLDPHYWDERFSDEEHYEW---LKDY--SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKM   97 (259)
Q Consensus        23 ~~~~~~w~~~~~~~~~~~w---~~~~--~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a   97 (259)
                      |...+||+..|........   ...+  ..+..++.....++.+|||+|||+|..+..++..+..+|+++|+|+.+++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a   95 (265)
T 2i62_A           16 FNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWEL   95 (265)
T ss_dssp             CCHHHHHHHHHCCCSSCHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHH
T ss_pred             cCHHHHHHHHhCcCCcchhHHHHHHhhHHHHHHHhcccccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHH
Confidence            3446788888866432211   1111  1222333333346789999999999999999888766899999999999999


Q ss_pred             HHHHhhcCC-----------------------------CCe-EEEEcccCCCc-CCC---CceeEEEecceeeeeeeCCC
Q 025039           98 QERLLLKGY-----------------------------KEV-KVLEADMLDLP-FSN---DCFDVVIEKATMEVLFVNSG  143 (259)
Q Consensus        98 ~~~~~~~~~-----------------------------~~v-~~~~~d~~~~~-~~~---~~fD~V~~~~~l~~~~~~~~  143 (259)
                      ++++...+.                             .++ .+..+|+.+.. .+.   ++||+|++..+++++.    
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~----  171 (265)
T 2i62_A           96 QKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAAC----  171 (265)
T ss_dssp             HHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC----
T ss_pred             HHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhc----
Confidence            998765320                             016 88999998754 244   7899999999887541    


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          144 DPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       144 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                             ....+...+++++.++|+|||.+++.+.
T Consensus       172 -------~~~~~~~~~l~~~~~~LkpgG~li~~~~  199 (265)
T 2i62_A          172 -------PDLPAYRTALRNLGSLLKPGGFLVMVDA  199 (265)
T ss_dssp             -------SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             -------CChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence                   1346788999999999999999999764

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.71  E-value=4.9e-17  Score=139.91  Aligned_cols=107  Identities=18%  Similarity=0.287  Sum_probs=96.2

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..+..+++. +. +|+|+|+++.+++.|++++...++. ++++.++|+.++++++++||+|++..
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  193 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE  193 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC
Confidence            457889999999999999999988 65 8999999999999999999988876 59999999999888888999999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +++++                +...+++++.++|||||++++.++.
T Consensus       194 ~l~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~  223 (312)
T 3vc1_A          194 STMYV----------------DLHDLFSEHSRFLKVGGRYVTITGC  223 (312)
T ss_dssp             CGGGS----------------CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhC----------------CHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            88776                2789999999999999999998754

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.71  E-value=4.9e-17  Score=131.73  Aligned_cols=109  Identities=25%  Similarity=0.336  Sum_probs=92.7

Q ss_pred             HhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEE
Q 025039           50 HLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVV  129 (259)
Q Consensus        50 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V  129 (259)
                      ..+.....++.+|||+|||+|..+..+   +..+++++|+|+.+++.++++.     +++.+.++|+.++++++++||+|
T Consensus        28 ~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v   99 (211)
T 2gs9_A           28 RALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPGESFDVV   99 (211)
T ss_dssp             HHHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCSSCEEEE
T ss_pred             HHHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCCCcEEEE
Confidence            445555567899999999999998877   4338999999999999999886     46889999999888878899999


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      ++..+++++               .+...+++++.++|+|||.+++.++...
T Consensus       100 ~~~~~l~~~---------------~~~~~~l~~~~~~L~pgG~l~i~~~~~~  136 (211)
T 2gs9_A          100 LLFTTLEFV---------------EDVERVLLEARRVLRPGGALVVGVLEAL  136 (211)
T ss_dssp             EEESCTTTC---------------SCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             EEcChhhhc---------------CCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence            999888776               3567899999999999999999887654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.71  E-value=1.4e-16  Score=131.66  Aligned_cols=150  Identities=15%  Similarity=0.106  Sum_probs=120.2

Q ss_pred             hhcccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeE
Q 025039           51 LVQPHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDV  128 (259)
Q Consensus        51 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~  128 (259)
                      .+...++++.+|||+|||+|.+++.+++.++. +|+++|+++.+++.|+++++.+++.+ +++.++|..+...+...||+
T Consensus        14 ~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~   93 (244)
T 3gnl_A           14 KVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDT   93 (244)
T ss_dssp             HHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCE
T ss_pred             HHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccE
Confidence            34557788899999999999999999999876 89999999999999999999999865 99999999875533346999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEE
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHY  208 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (259)
                      |+..++                 +-....+++......|+++|.|++...........++...+|....+.....++..|
T Consensus        94 Iviagm-----------------Gg~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~~~Gf~i~~E~lv~e~~k~Y  156 (244)
T 3gnl_A           94 IVIAGM-----------------GGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEAILREDNKVY  156 (244)
T ss_dssp             EEEEEE-----------------CHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHHTEEEEEEEEEEETTEEE
T ss_pred             EEEeCC-----------------chHHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHHHCCCEEEEEEEEEECCEEE
Confidence            886554                 225678899999999999999999876655555566677777666666666677777


Q ss_pred             EEEEEEeCC
Q 025039          209 FFYILRKGK  217 (259)
Q Consensus       209 ~~~~~~~~~  217 (259)
                      ....+.++.
T Consensus       157 eii~~~~~~  165 (244)
T 3gnl_A          157 EIMVLAPSE  165 (244)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEeCC
Confidence            777776653

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.70  E-value=2.3e-17  Score=135.97  Aligned_cols=136  Identities=19%  Similarity=0.324  Sum_probs=106.9

Q ss_pred             ccchhhhcCCCCcccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC
Q 025039           26 PHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG  105 (259)
Q Consensus        26 ~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~  105 (259)
                      .++|+..+.... ..|......+..++.....++.+|||+|||+|..+..+++.+. +++++|+|+.+++.+++++    
T Consensus         9 a~~yd~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~----   82 (239)
T 3bxo_A            9 ADVYDLFYLGRG-KDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL----   82 (239)
T ss_dssp             HHHHHHHHHHHT-CCHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC----
T ss_pred             HHHHHHHhhccH-hhHHHHHHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC----
Confidence            567887764321 1233333455566665567789999999999999999999987 9999999999999999875    


Q ss_pred             CCCeEEEEcccCCCcCCCCceeEEEec-ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          106 YKEVKVLEADMLDLPFSNDCFDVVIEK-ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       106 ~~~v~~~~~d~~~~~~~~~~fD~V~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                       +++.+.++|+.+++. .++||+|+|. .+++++            .+..+...+++++.++|+|||.+++.++..+
T Consensus        83 -~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~------------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  145 (239)
T 3bxo_A           83 -PDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYL------------KTTEELGAAVASFAEHLEPGGVVVVEPWWFP  145 (239)
T ss_dssp             -TTCEEEECCTTTCCC-SSCEEEEEECTTGGGGC------------CSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred             -CCCEEEECCHHHccc-CCCCcEEEEcCchHhhc------------CCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence             368999999988776 5789999964 477766            2446788999999999999999999766543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.70  E-value=4e-17  Score=140.04  Aligned_cols=119  Identities=16%  Similarity=0.228  Sum_probs=100.0

Q ss_pred             HhhcccCCCCCcEEEEcCCCCcchHHHH-hcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCce
Q 025039           50 HLVQPHIKPNSSVLELGCGNSRLSEGLY-NDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCF  126 (259)
Q Consensus        50 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~f  126 (259)
                      ..+...+.++.+|||+|||+|..+..++ ...+. +++++|+++.+++.+++++...+..+ ++++++|+.+++++ ++|
T Consensus       110 ~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~f  188 (305)
T 3ocj_A          110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGY  188 (305)
T ss_dssp             HHHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCE
T ss_pred             HHHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCe
Confidence            4444556788999999999999999885 33333 99999999999999999998887755 99999999998876 899


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      |+|+++.+++++            .+......+++++.++|+|||++++.++..+
T Consensus       189 D~v~~~~~~~~~------------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  231 (305)
T 3ocj_A          189 DLLTSNGLNIYE------------PDDARVTELYRRFWQALKPGGALVTSFLTPP  231 (305)
T ss_dssp             EEEECCSSGGGC------------CCHHHHHHHHHHHHHHEEEEEEEEEECCCCC
T ss_pred             EEEEECChhhhc------------CCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence            999999988876            2445666799999999999999999876653

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.70  E-value=1.3e-16  Score=131.69  Aligned_cols=132  Identities=21%  Similarity=0.361  Sum_probs=105.1

Q ss_pred             ccchhhhcCCCCcccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC
Q 025039           26 PHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG  105 (259)
Q Consensus        26 ~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~  105 (259)
                      .++|+..+....       +..+...+...++++.+|||+|||+|..+..+++. . +++++|+|+.+++.+++++...+
T Consensus         8 a~~yd~~~~~~~-------~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~v~~vD~s~~~~~~a~~~~~~~~   78 (243)
T 3d2l_A            8 AYVYDELMQDVP-------YPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADH-Y-EVTGVDLSEEMLEIAQEKAMETN   78 (243)
T ss_dssp             THHHHHHTTTCC-------HHHHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT-S-EEEEEESCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhccc-------HHHHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC-C-eEEEEECCHHHHHHHHHhhhhcC
Confidence            456666553221       23444555556677899999999999999999888 4 99999999999999999987666


Q ss_pred             CCCeEEEEcccCCCcCCCCceeEEEecc-eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          106 YKEVKVLEADMLDLPFSNDCFDVVIEKA-TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       106 ~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                       .++.+.++|+.+++.+ ++||+|++.. +++++            .+..+...+++++.++|+|||.+++..+..
T Consensus        79 -~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~------------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  140 (243)
T 3d2l_A           79 -RHVDFWVQDMRELELP-EPVDAITILCDSLNYL------------QTEADVKQTFDSAARLLTDGGKLLFDVHSP  140 (243)
T ss_dssp             -CCCEEEECCGGGCCCS-SCEEEEEECTTGGGGC------------CSHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             -CceEEEEcChhhcCCC-CCcCEEEEeCCchhhc------------CCHHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence             4689999999887765 7899999975 77766            245778899999999999999999866543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.70  E-value=7.3e-17  Score=134.26  Aligned_cols=136  Identities=19%  Similarity=0.346  Sum_probs=102.1

Q ss_pred             ccchhhhcCCCCcccccccchHHHHhhccc-CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc
Q 025039           26 PHYWDERFSDEEHYEWLKDYSHFRHLVQPH-IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK  104 (259)
Q Consensus        26 ~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~  104 (259)
                      ++||+..|..... .+......+..++... ..++.+|||+|||+|..+..+++.+. +++|+|+|+.+++.+++++...
T Consensus         9 a~~yd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~   86 (252)
T 1wzn_A            9 AEYYDTIYRRRIE-RVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKER   86 (252)
T ss_dssp             GGGHHHHTHHHHH-THHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcchh-hhHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhc
Confidence            6788887753210 0111122233444332 24678999999999999999999987 9999999999999999998776


Q ss_pred             CCCCeEEEEcccCCCcCCCCceeEEEecc-eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          105 GYKEVKVLEADMLDLPFSNDCFDVVIEKA-TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       105 ~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +. ++.+.++|+.+++.+ ++||+|++.. .++++             +..+...+++++.++|+|||.+++...
T Consensus        87 ~~-~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~-------------~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A           87 NL-KIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYF-------------DEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             TC-CCEEEESCGGGCCCC-SCEEEEEECSSGGGGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CC-ceEEEECChhhcccC-CCccEEEEcCCchhcC-------------CHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            64 689999999887754 6899999863 33332             346788999999999999999987543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.70  E-value=9.5e-17  Score=132.59  Aligned_cols=105  Identities=20%  Similarity=0.327  Sum_probs=91.8

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .++.+|||+|||+|..+..+++.+..+++++|+++.+++.++++...   .++.+.++|+.++++++++||+|++..+++
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  118 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLPQDSFDLAYSSLALH  118 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCCTTCEEEEEEESCGG
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCCCCCceEEEEecccc
Confidence            36789999999999999999998765899999999999999988653   258999999988877778999999998887


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++               .+...+++++.++|+|||.+++.++.
T Consensus       119 ~~---------------~~~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          119 YV---------------EDVARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             GC---------------SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cc---------------chHHHHHHHHHHhcCcCcEEEEEeCC
Confidence            76               35678999999999999999998754

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.69  E-value=6.1e-17  Score=138.40  Aligned_cols=117  Identities=15%  Similarity=0.210  Sum_probs=95.8

Q ss_pred             HHHHhhccc-CCCCCcEEEEcCCCCcchHHHHhc--CCCeEEEeeCCHHHHHHHHHHHhhc--CCCCeEEEEcccCCCcC
Q 025039           47 HFRHLVQPH-IKPNSSVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLK--GYKEVKVLEADMLDLPF  121 (259)
Q Consensus        47 ~~~~~l~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~v~~~~~d~~~~~~  121 (259)
                      .+...+... ..++.+|||+|||+|..+..+++.  ...+|+|+|+|+.+++.|++++...  ..++++++++|+.++++
T Consensus        24 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~  103 (299)
T 3g5t_A           24 DFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKF  103 (299)
T ss_dssp             HHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGG
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCc
Confidence            344444433 347899999999999999999964  2339999999999999999998775  23579999999998876


Q ss_pred             CC------CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          122 SN------DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       122 ~~------~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ..      ++||+|++..+++++                +...+++++.++|+|||.+++.++.
T Consensus       104 ~~~~~~~~~~fD~V~~~~~l~~~----------------~~~~~l~~~~~~LkpgG~l~i~~~~  151 (299)
T 3g5t_A          104 LGADSVDKQKIDMITAVECAHWF----------------DFEKFQRSAYANLRKDGTIAIWGYA  151 (299)
T ss_dssp             GCTTTTTSSCEEEEEEESCGGGS----------------CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccccccCCCeeEEeHhhHHHHh----------------CHHHHHHHHHHhcCCCcEEEEEecC
Confidence            66      799999999888754                5578999999999999999986544

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.69  E-value=1.4e-16  Score=136.38  Aligned_cols=116  Identities=11%  Similarity=0.168  Sum_probs=96.4

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..+..+++. +. +|+|+|+|+.+++.+++++...+++ ++++.++|+.++   +++||+|++..
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~  145 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLG  145 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEES
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcc
Confidence            467889999999999999999998 64 9999999999999999999988876 599999999876   57899999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      +++++..    ++.  ..+......+++++.++|||||++++.++..+
T Consensus       146 ~~~~~~d----~~~--~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          146 AFEHFAD----GAG--DAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             CGGGTTC----CSS--CCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             hHHhcCc----ccc--ccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence            8877610    000  00225678999999999999999999877543

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.69  E-value=1.1e-16  Score=135.35  Aligned_cols=103  Identities=24%  Similarity=0.428  Sum_probs=90.0

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      ..++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.+++++     +++.+.++|+.++++ +++||+|++..++
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-~~~fD~v~~~~~l  127 (279)
T 3ccf_A           55 PQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV-DKPLDAVFSNAML  127 (279)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC-SSCEEEEEEESCG
T ss_pred             CCCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc-CCCcCEEEEcchh
Confidence            35678999999999999999999665 9999999999999999875     468899999988876 5789999999998


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +++               .+...+++++.++|+|||++++..+..
T Consensus       128 ~~~---------------~d~~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          128 HWV---------------KEPEAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             GGC---------------SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             hhC---------------cCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            876               356789999999999999999987654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.69  E-value=1.7e-16  Score=128.07  Aligned_cols=108  Identities=18%  Similarity=0.228  Sum_probs=89.0

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC--CCeEEEEcccCCCc--CCCCc-eeEEEec
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLDLP--FSNDC-FDVVIEK  132 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~--~~~~~-fD~V~~~  132 (259)
                      ++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...++  ++++++++|+.+..  ..+++ ||+|+++
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            5789999999999999988888766899999999999999999998887  57999999987643  23568 9999998


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHH--HhcccCCcEEEEEecCCc
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGV--HRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~~~  181 (259)
                      .+++ .               .....+++.+  .++|+|||.+++......
T Consensus       133 ~~~~-~---------------~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          133 PPFH-F---------------NLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             CCSS-S---------------CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             CCCC-C---------------ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            7753 1               3456777777  678999999998766543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.69  E-value=4.7e-17  Score=139.57  Aligned_cols=113  Identities=13%  Similarity=0.187  Sum_probs=87.2

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC------CeEEEEcccC------CC--cCCC
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK------EVKVLEADML------DL--PFSN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------~v~~~~~d~~------~~--~~~~  123 (259)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++....+..      ++++.+.|+.      ++  ++++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            47899999999998777676665449999999999999999988765432      2567777772      22  2356


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      ++||+|+|..++|+++..            .+...+++++.++|||||++++.+++...
T Consensus       128 ~~FD~V~~~~~lhy~~~~------------~~~~~~l~~~~r~LkpGG~~i~~~~~~~~  174 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHP------------RHYATVMNNLSELTASGGKVLITTMDGDK  174 (302)
T ss_dssp             SCEEEEEEESCGGGTCST------------TTHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred             CCeeEEEECchHHHhCCH------------HHHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence            799999999888765311            23469999999999999999998876433

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.69  E-value=5.9e-17  Score=135.80  Aligned_cols=131  Identities=24%  Similarity=0.375  Sum_probs=100.5

Q ss_pred             ccchhhhcCCCCcccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC
Q 025039           26 PHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG  105 (259)
Q Consensus        26 ~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~  105 (259)
                      .++|++.+..   ..|......+..++...++++.+|||+|||+|..+..+++.+. +++++|+|+.+++.++++..   
T Consensus        25 a~~Yd~~~~~---~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~---   97 (260)
T 2avn_A           25 ARAYDSMYET---PKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV---   97 (260)
T ss_dssp             HHHHGGGGCS---HHHHHHHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC---
T ss_pred             HHHHHHhccc---cchhHHHHHHHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC---
Confidence            3455555521   2232223445566665566788999999999999999999877 89999999999999998864   


Q ss_pred             CCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          106 YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       106 ~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                        . .+.++|+.++++++++||+|++..++.++.              .+...+++++.++|+|||.+++..++.
T Consensus        98 --~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~--------------~~~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A           98 --K-NVVEAKAEDLPFPSGAFEAVLALGDVLSYV--------------ENKDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             --S-CEEECCTTSCCSCTTCEEEEEECSSHHHHC--------------SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             --C-CEEECcHHHCCCCCCCEEEEEEcchhhhcc--------------ccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence              1 278889988887788999999987654431              237789999999999999999987654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.69  E-value=2.1e-16  Score=133.92  Aligned_cols=121  Identities=13%  Similarity=0.133  Sum_probs=99.9

Q ss_pred             cccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC
Q 025039           40 EWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD  118 (259)
Q Consensus        40 ~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~  118 (259)
                      .|++....-...+...+.++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|++++..+++.+ ++++++|+.+
T Consensus       107 ~f~~~~~~~~~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~  186 (278)
T 2frn_A          107 MFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRD  186 (278)
T ss_dssp             CCCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTT
T ss_pred             eEcCCcHHHHHHHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHH
Confidence            355554444555555677789999999999999999999987579999999999999999999888876 8999999998


Q ss_pred             CcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          119 LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       119 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +.. .++||+|+++.+.+                   ...++..+.++|+|||.+++.+++.
T Consensus       187 ~~~-~~~fD~Vi~~~p~~-------------------~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          187 FPG-ENIADRILMGYVVR-------------------THEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             CCC-CSCEEEEEECCCSS-------------------GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             hcc-cCCccEEEECCchh-------------------HHHHHHHHHHHCCCCeEEEEEEeec
Confidence            765 67899999865432                   1468889999999999999988764

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.69  E-value=7.1e-17  Score=137.79  Aligned_cols=112  Identities=15%  Similarity=0.205  Sum_probs=88.8

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCC-----------------------------
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGY-----------------------------  106 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-----------------------------  106 (259)
                      .++.+|||+|||+|..+..+++... .+|+|+|+++.+++.|++++...+.                             
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            4678999999999999999999843 3999999999999999998665431                             


Q ss_pred             -----------------------------CCeEEEEcccCCCc-----CCCCceeEEEecceeeeeeeCCCCCCCCCchh
Q 025039          107 -----------------------------KEVKVLEADMLDLP-----FSNDCFDVVIEKATMEVLFVNSGDPWNPQPET  152 (259)
Q Consensus       107 -----------------------------~~v~~~~~d~~~~~-----~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~  152 (259)
                                                   .++++.++|+....     +..++||+|+|..+++++..+         .+
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~---------~~  195 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLN---------WG  195 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHH---------HH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhc---------CC
Confidence                                         26899999987643     456799999999988665100         14


Q ss_pred             HHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          153 VTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       153 ~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .....++++++.++|+|||+|++..
T Consensus       196 ~~~~~~~l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          196 DEGLKRMFRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEEec
Confidence            4588899999999999999999863

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.69  E-value=4.2e-17  Score=134.74  Aligned_cols=112  Identities=15%  Similarity=0.187  Sum_probs=90.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC--cCCCCceeEEEe-c
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIE-K  132 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~-~  132 (259)
                      ..++.+|||+|||+|..+..+++.+..+++++|+|+.|++.|+++....+ .++.++++|+.++  ++++++||+|++ .
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~d~  136 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILYDT  136 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccCCCceEEEEECC
Confidence            45778999999999999999987766589999999999999999987766 4689999999887  777889999998 3


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ..+ .. ..         .+......+++++.++|||||+++++++.
T Consensus       137 ~~~-~~-~~---------~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          137 YPL-SE-ET---------WHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             CCC-BG-GG---------TTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             ccc-ch-hh---------hhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            332 11 00         12356678899999999999999987643

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.68  E-value=1.9e-16  Score=123.96  Aligned_cols=101  Identities=20%  Similarity=0.436  Sum_probs=88.5

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.++.+|||+|||+|..+..+++.+. +++++|+++.+++.++++     .+++.+..+|   .++++++||+|++..++
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d---~~~~~~~~D~v~~~~~l   85 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----FDSVITLSDP---KEIPDNSVDFILFANSF   85 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----CTTSEEESSG---GGSCTTCEEEEEEESCS
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----CCCcEEEeCC---CCCCCCceEEEEEccch
Confidence            45678999999999999999999987 999999999999999988     2478999988   55667899999999988


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +++               .+...+++++.++|+|||.+++.++..
T Consensus        86 ~~~---------------~~~~~~l~~~~~~L~pgG~l~~~~~~~  115 (170)
T 3i9f_A           86 HDM---------------DDKQHVISEVKRILKDDGRVIIIDWRK  115 (170)
T ss_dssp             TTC---------------SCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             hcc---------------cCHHHHHHHHHHhcCCCCEEEEEEcCc
Confidence            776               356789999999999999999987754

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.68  E-value=2e-16  Score=127.71  Aligned_cols=113  Identities=16%  Similarity=0.254  Sum_probs=95.0

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCcee
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFD  127 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  127 (259)
                      +...+...+.++.+|||+|||+|..+..+++.+..+++++|+++.+++.|++++...+..++.+.++|+.+..  .++||
T Consensus        50 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~fD  127 (205)
T 3grz_A           50 AMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--DGKFD  127 (205)
T ss_dssp             HHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--CSCEE
T ss_pred             HHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--CCCce
Confidence            4455555567889999999999999999998765599999999999999999999888767999999997743  47899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +|+++.+++                  ....+++++.++|+|||.+++.++..
T Consensus       128 ~i~~~~~~~------------------~~~~~l~~~~~~L~~gG~l~~~~~~~  162 (205)
T 3grz_A          128 LIVANILAE------------------ILLDLIPQLDSHLNEDGQVIFSGIDY  162 (205)
T ss_dssp             EEEEESCHH------------------HHHHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred             EEEECCcHH------------------HHHHHHHHHHHhcCCCCEEEEEecCc
Confidence            999876653                  34788999999999999999976543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.68  E-value=5.9e-17  Score=134.06  Aligned_cols=105  Identities=18%  Similarity=0.297  Sum_probs=90.5

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC--cCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~  132 (259)
                      .++++.+|||+|||+|..+..+++.+. +++|+|+|+.+++.++++        +.+..+|+.+.  ++++++||+|++.
T Consensus        38 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~~~~fD~i~~~  108 (240)
T 3dli_A           38 YFKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLPDKYLDGVMIS  108 (240)
T ss_dssp             GTTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred             hhcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence            456789999999999999999999877 899999999999998865        67788888764  5677899999999


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      .+++++             ..++...+++++.++|||||++++.++...
T Consensus       109 ~~l~~~-------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  144 (240)
T 3dli_A          109 HFVEHL-------------DPERLFELLSLCYSKMKYSSYIVIESPNPT  144 (240)
T ss_dssp             SCGGGS-------------CGGGHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred             CchhhC-------------CcHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            999887             334678999999999999999999877643

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.68  E-value=2.1e-16  Score=134.14  Aligned_cols=107  Identities=23%  Similarity=0.302  Sum_probs=93.7

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..+..+++..+  .+++|+|+|+.+++.+++++...+. ++++.++|+.+++++ ++||+|++..
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~v~~~~   97 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELN-DKYDIAICHA   97 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCS-SCEEEEEEES
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCcC-CCeeEEEECC
Confidence            45788999999999999999998843  2899999999999999999877664 799999999988764 6899999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +++++               .+...+++++.++|+|||++++.++.
T Consensus        98 ~l~~~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           98 FLLHM---------------TTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             CGGGC---------------SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hhhcC---------------CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            88776               45579999999999999999998765

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.68  E-value=4.4e-17  Score=144.21  Aligned_cols=108  Identities=21%  Similarity=0.313  Sum_probs=92.4

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhc-----C-C--CCeEEEEcccCCC------
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLK-----G-Y--KEVKVLEADMLDL------  119 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~-----~-~--~~v~~~~~d~~~~------  119 (259)
                      +.++.+|||+|||+|..+..+++.. +. +|+|+|+|+.+++.+++++...     | .  +++.++++|+.++      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            3467899999999999999998863 33 9999999999999999987644     2 2  4799999999886      


Q ss_pred             cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          120 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       120 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ++++++||+|+++.+++++               .+...+++++.++|||||++++.++
T Consensus       161 ~~~~~~fD~V~~~~~l~~~---------------~d~~~~l~~~~r~LkpgG~l~i~~~  204 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLS---------------TNKLALFKEIHRVLRDGGELYFSDV  204 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGC---------------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEccchhcC---------------CCHHHHHHHHHHHcCCCCEEEEEEe
Confidence            7778899999999998876               3567999999999999999999764

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.67  E-value=2.1e-16  Score=133.67  Aligned_cols=170  Identities=13%  Similarity=0.156  Sum_probs=112.9

Q ss_pred             ccchhhhcCC-CCcccccccchHHHHhhcccC-CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHh
Q 025039           26 PHYWDERFSD-EEHYEWLKDYSHFRHLVQPHI-KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLL  102 (259)
Q Consensus        26 ~~~w~~~~~~-~~~~~w~~~~~~~~~~l~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~  102 (259)
                      .+||...|.. +..+........+...+...+ .++.+|||+|||+|..+..++...+. +++++|+|+.+++.+++++.
T Consensus        75 ~~f~~~~~~~~~~~~ipr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~  154 (276)
T 2b3t_A           75 REFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ  154 (276)
T ss_dssp             EEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH
T ss_pred             eEECCceEEeCCCCcccCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence            5677776653 222222222333444333333 46789999999999999999976444 99999999999999999998


Q ss_pred             hcCCCCeEEEEcccCCCcCCCCceeEEEecceeeeee----------eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcE
Q 025039          103 LKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL  172 (259)
Q Consensus       103 ~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  172 (259)
                      ..+++++.+.++|+.+. ++.++||+|+++.++...-          ..+...+.....+......+++.+.++|+|||+
T Consensus       155 ~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~  233 (276)
T 2b3t_A          155 HLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGF  233 (276)
T ss_dssp             HHTCCSEEEECCSTTGG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEE
T ss_pred             HcCCCceEEEEcchhhh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence            88877899999999773 3357899999987653210          011111111222345678999999999999999


Q ss_pred             EEEEecC-CccccccccCCCCCCcE
Q 025039          173 FISVSFG-QPHFRRPFFNAPQFTWS  196 (259)
Q Consensus       173 l~~~~~~-~~~~~~~~~~~~~~~~~  196 (259)
                      +++.... +......++...+|...
T Consensus       234 l~~~~~~~~~~~~~~~l~~~Gf~~v  258 (276)
T 2b3t_A          234 LLLEHGWQQGEAVRQAFILAGYHDV  258 (276)
T ss_dssp             EEEECCSSCHHHHHHHHHHTTCTTC
T ss_pred             EEEEECchHHHHHHHHHHHCCCcEE
Confidence            9986432 22222334444555433

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.67  E-value=4.5e-16  Score=125.60  Aligned_cols=106  Identities=15%  Similarity=0.121  Sum_probs=91.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|..+..+++.++. +++++|+++.+++.+++++...++++++++++|+.+......+||+|++..+
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~  117 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGS  117 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCC
Confidence            457889999999999999999999854 9999999999999999999888887799999999764433467999998765


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++                  +...+++++.++|+|||.+++....
T Consensus       118 ~~------------------~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          118 GG------------------MLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             TT------------------CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             Cc------------------CHHHHHHHHHHhcCCCeEEEEEecc
Confidence            42                  4468999999999999999998665

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.67  E-value=5.9e-17  Score=135.90  Aligned_cols=103  Identities=17%  Similarity=0.319  Sum_probs=90.6

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.++++.      ++.+.++|+.++++++++||+|++..+++
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  105 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLALPDKSVDGVISILAIH  105 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCSCTTCBSEEEEESCGG
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCCCCCCEeEEEEcchHh
Confidence            5788999999999999999998766 9999999999998876653      78999999999888888999999999988


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      ++               .+...+++++.++|| ||.+++.++....
T Consensus       106 ~~---------------~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~  135 (261)
T 3ege_A          106 HF---------------SHLEKSFQEMQRIIR-DGTIVLLTFDIRL  135 (261)
T ss_dssp             GC---------------SSHHHHHHHHHHHBC-SSCEEEEEECGGG
T ss_pred             hc---------------cCHHHHHHHHHHHhC-CcEEEEEEcCCch
Confidence            76               567799999999999 9999998876543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.67  E-value=4.6e-16  Score=124.74  Aligned_cols=123  Identities=16%  Similarity=0.231  Sum_probs=95.8

Q ss_pred             hhcccCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCc-CCCCce
Q 025039           51 LVQPHIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP-FSNDCF  126 (259)
Q Consensus        51 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~-~~~~~f  126 (259)
                      ++...++++.+|||+|||+|..+..+++. ++. +++++|+++.+++.|++++...++ ++++++++|+.+++ ..+++|
T Consensus        15 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~f   94 (197)
T 3eey_A           15 YIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPV   94 (197)
T ss_dssp             HHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCE
T ss_pred             HHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCc
Confidence            33445678899999999999999999887 333 999999999999999999998877 56999999988765 455789


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |+|+++.++  +  .....+.  .....+..++++++.++|+|||++++..+.
T Consensus        95 D~v~~~~~~--~--~~~~~~~--~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           95 KAVMFNLGY--L--PSGDHSI--STRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             EEEEEEESB--C--TTSCTTC--BCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             eEEEEcCCc--c--cCccccc--ccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            999987655  1  0000000  013346677999999999999999998764

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.67  E-value=7.3e-16  Score=132.56  Aligned_cols=120  Identities=25%  Similarity=0.347  Sum_probs=95.7

Q ss_pred             hhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------CCCCeEEEEcccCCCc---
Q 025039           51 LVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------GYKEVKVLEADMLDLP---  120 (259)
Q Consensus        51 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~v~~~~~d~~~~~---  120 (259)
                      .+...+.++.+|||+|||+|..+..+++.+..+++++|+|+.+++.++++....       +..++.++++|+.+++   
T Consensus        27 ~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  106 (313)
T 3bgv_A           27 KVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLID  106 (313)
T ss_dssp             HHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTT
T ss_pred             HhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhh
Confidence            333334577899999999999999998865449999999999999999987654       2336899999998865   


Q ss_pred             -CC--CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          121 -FS--NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       121 -~~--~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                       ++  .++||+|++..++|+++           ++..+...+++++.++|+|||.+++.+++..
T Consensus       107 ~~~~~~~~fD~V~~~~~l~~~~-----------~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  159 (313)
T 3bgv_A          107 KFRDPQMCFDICSCQFVCHYSF-----------ESYEQADMMLRNACERLSPGGYFIGTTPNSF  159 (313)
T ss_dssp             TCSSTTCCEEEEEEETCGGGGG-----------GSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred             hcccCCCCEEEEEEecchhhcc-----------CCHHHHHHHHHHHHHHhCCCcEEEEecCChH
Confidence             43  35899999999887652           2446788999999999999999999887653

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.67  E-value=4.2e-16  Score=123.56  Aligned_cols=110  Identities=15%  Similarity=0.218  Sum_probs=87.0

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCc----CCCCceeEEEe
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLP----FSNDCFDVVIE  131 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~----~~~~~fD~V~~  131 (259)
                      .++.+|||+|||+|..+..+++.+..+|+++|+++.+++.|++++...++. +++++++|+.+..    ...++||+|++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  122 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  122 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence            467899999999999999988876559999999999999999999888763 5999999987632    12578999999


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHH--HhcccCCcEEEEEecCCcc
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGV--HRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~~~~  182 (259)
                      +.+++..                .....++.+  .++|+|||.+++.......
T Consensus       123 ~~~~~~~----------------~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~  159 (187)
T 2fhp_A          123 DPPYAKQ----------------EIVSQLEKMLERQLLTNEAVIVCETDKTVK  159 (187)
T ss_dssp             CCCGGGC----------------CHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred             CCCCCch----------------hHHHHHHHHHHhcccCCCCEEEEEeCCccc
Confidence            8775321                223445555  8899999999988766543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.67  E-value=3.5e-16  Score=132.74  Aligned_cols=108  Identities=18%  Similarity=0.278  Sum_probs=92.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..+..+++ .+. +|+|+|+|+.+++.+++++...+.. ++.+..+|+.+++   ++||+|++..
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~  137 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIG  137 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeC
Confidence            45778999999999999999984 455 9999999999999999998877764 5899999997765   7899999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +++++             +..+...+++++.++|||||.+++.++..
T Consensus       138 ~l~~~-------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          138 AFEHF-------------GHERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             CGGGT-------------CTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             chhhc-------------ChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence            98876             22567899999999999999999987654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.66  E-value=3.8e-16  Score=130.28  Aligned_cols=102  Identities=22%  Similarity=0.248  Sum_probs=89.5

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .++.+|||+|||+|..+..+++..+. +++++|+|+.+++.++++.     +++.+..+|+.+++ ++++||+|+++.++
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l  105 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----PNTNFGKADLATWK-PAQKADLLYANAVF  105 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----TTSEEEECCTTTCC-CSSCEEEEEEESCG
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----CCcEEEECChhhcC-ccCCcCEEEEeCch
Confidence            46789999999999999999988322 8999999999999999872     47899999998877 67899999999988


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +++               .+...+++++.++|+|||.+++.++.
T Consensus       106 ~~~---------------~~~~~~l~~~~~~L~pgG~l~~~~~~  134 (259)
T 2p35_A          106 QWV---------------PDHLAVLSQLMDQLESGGVLAVQMPD  134 (259)
T ss_dssp             GGS---------------TTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred             hhC---------------CCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence            876               46778999999999999999998764

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.66  E-value=4.1e-16  Score=134.32  Aligned_cols=109  Identities=16%  Similarity=0.227  Sum_probs=94.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..+..+++. +. +|+|+|+|+.+++.+++++...++.+ +.+..+|+.+++   ++||+|++..
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~  163 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIE  163 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeC
Confidence            357789999999999999999987 66 99999999999999999998877654 899999997764   6899999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      +++++             +..+...+++++.++|+|||.+++.++...
T Consensus       164 ~l~~~-------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  198 (318)
T 2fk8_A          164 AFEHF-------------GHENYDDFFKRCFNIMPADGRMTVQSSVSY  198 (318)
T ss_dssp             CGGGT-------------CGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             hHHhc-------------CHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence            88876             335778999999999999999999877653

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.66  E-value=4.6e-16  Score=125.66  Aligned_cols=107  Identities=11%  Similarity=0.119  Sum_probs=87.1

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-CcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~~~~l~  136 (259)
                      ++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...++++++++++|+.+ ++...++||+|+++.+++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence            5789999999999999998888766999999999999999999998887779999999876 344456899999877643


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHh--cccCCcEEEEEecCC
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHR--VLKPDGLFISVSFGQ  180 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~  180 (259)
                      .                .....+++.+.+  +|+|||++++.....
T Consensus       134 ~----------------~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          134 R----------------GLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             T----------------TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             C----------------CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            1                234456666654  699999999876543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.66  E-value=3.6e-16  Score=130.94  Aligned_cols=104  Identities=20%  Similarity=0.240  Sum_probs=82.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC--CcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--LPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.+++++...   .+.....++..  ....+++||+|+++.
T Consensus        43 l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~---~v~~~~~~~~~~~~~~~~~~fD~Vv~~~  118 (261)
T 3iv6_A           43 IVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR---CVTIDLLDITAEIPKELAGHFDFVLNDR  118 (261)
T ss_dssp             CCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS---CCEEEECCTTSCCCGGGTTCCSEEEEES
T ss_pred             CCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc---cceeeeeecccccccccCCCccEEEEhh
Confidence            45788999999999999999999987 9999999999999999987643   12222222211  011246899999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +++++             ...+...++.++.++| |||++++..
T Consensus       119 ~l~~~-------------~~~~~~~~l~~l~~lL-PGG~l~lS~  148 (261)
T 3iv6_A          119 LINRF-------------TTEEARRACLGMLSLV-GSGTVRASV  148 (261)
T ss_dssp             CGGGS-------------CHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred             hhHhC-------------CHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence            98876             4467888999999999 999999864

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.66  E-value=5.7e-16  Score=131.26  Aligned_cols=103  Identities=17%  Similarity=0.241  Sum_probs=86.5

Q ss_pred             cCCCCCcEEEEcCCCCcchH-HHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGNSRLSE-GLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~-~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      .+.++.+|||+|||+|.++. .+++. +. +|+++|+++.+++.|+++++..++.+++++++|+.+++  +++||+|++.
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~  195 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVA  195 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEEC
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEEC
Confidence            46789999999999987664 44543 44 99999999999999999998888877999999998865  6789999975


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ...                  .+..++++++.++|||||++++...
T Consensus       196 a~~------------------~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          196 ALA------------------EPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             TTC------------------SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCc------------------cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            431                  3567899999999999999999764

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.65  E-value=9.3e-16  Score=134.29  Aligned_cols=151  Identities=17%  Similarity=0.195  Sum_probs=109.0

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      ..++.+|||+|||+|.+++.++..+ +. +++|+|+++.+++.|++++...+++++++.++|+.+++.+...||+|++++
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~np  280 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANP  280 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECC
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECC
Confidence            4577899999999999999999976 33 999999999999999999999988789999999999876667799999998


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEEEEEEE
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYIL  213 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (259)
                      ++.....       ...+.......+++.+.++|+|||.+++.+...... ..+.. .++........+.++....++++
T Consensus       281 Pyg~r~~-------~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~-~~~~~-~g~~~~~~~~l~~g~l~~~i~vl  351 (354)
T 3tma_A          281 PHGLRLG-------RKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALL-KRALP-PGFALRHARVVEQGGVYPRVFVL  351 (354)
T ss_dssp             CSCC-----------CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHH-HHHCC-TTEEEEEEEECCBTTBCCEEEEE
T ss_pred             CCcCccC-------CcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHH-HHHhh-cCcEEEEEEEEEeCCEEEEEEEE
Confidence            8754311       111223345789999999999999999988765332 22223 33333333333333444445555


Q ss_pred             Ee
Q 025039          214 RK  215 (259)
Q Consensus       214 ~~  215 (259)
                      +|
T Consensus       352 ~r  353 (354)
T 3tma_A          352 EK  353 (354)
T ss_dssp             EE
T ss_pred             Ec
Confidence            43

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.65  E-value=2.2e-16  Score=130.70  Aligned_cols=112  Identities=15%  Similarity=0.154  Sum_probs=89.3

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC--cCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~  132 (259)
                      ...++.+|||||||+|..+..+++..+.+++++|+++.+++.|+++....+ .++.++.+|+...  .+++++||.|+..
T Consensus        57 ~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~FD~i~~D  135 (236)
T 3orh_A           57 ASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILYD  135 (236)
T ss_dssp             HTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred             hccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhcccccccCCceEEEe
Confidence            345789999999999999999998876699999999999999999988766 3688888887653  4667899999854


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .+.....          ..+..+...+++++.++|||||+|++..
T Consensus       136 ~~~~~~~----------~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          136 TYPLSEE----------TWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCCCBGG----------GTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             eeecccc----------hhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            3321110          0244788899999999999999998754

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.65  E-value=1.1e-15  Score=121.37  Aligned_cols=109  Identities=17%  Similarity=0.348  Sum_probs=93.8

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCCCcCCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .++.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++...++++  +.+..+|+.+. .+.++||+|+++.+
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~  128 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-VKDRKYNKIITNPP  128 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-CTTSCEEEEEECCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-cccCCceEEEECCC
Confidence            4678999999999999999998854 99999999999999999998888776  99999998773 34678999999877


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      +++              .......+++++.++|+|||.+++..+...
T Consensus       129 ~~~--------------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  161 (194)
T 1dus_A          129 IRA--------------GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ  161 (194)
T ss_dssp             STT--------------CHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred             ccc--------------chhHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            643              236778999999999999999999887653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.65  E-value=1.5e-15  Score=122.86  Aligned_cols=102  Identities=18%  Similarity=0.126  Sum_probs=88.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      ..++.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++...+++++++..+|+.+.....++||+|++..++
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~  153 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHLVQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAP  153 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccch
Confidence            45788999999999999999999865 99999999999999999999888878999999998865556789999999888


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +++.                     +.+.++|+|||++++....
T Consensus       154 ~~~~---------------------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          154 PEIP---------------------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             SSCC---------------------THHHHTEEEEEEEEEEECS
T ss_pred             hhhh---------------------HHHHHhcccCcEEEEEEcC
Confidence            7651                     2578999999999997654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.65  E-value=6.9e-16  Score=121.95  Aligned_cols=146  Identities=16%  Similarity=0.230  Sum_probs=106.3

Q ss_pred             hHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCC
Q 025039           46 SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSN  123 (259)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~  123 (259)
                      ..+...+..++.++.+|||+|||+|.++..++...+. +++++|+|+.|++.+++++...|.. ++++  .|.... .+.
T Consensus        37 d~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~-~~~  113 (200)
T 3fzg_A           37 NDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD-VYK  113 (200)
T ss_dssp             HHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-HTT
T ss_pred             HHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-CCC
Confidence            3444444556678899999999999999999888655 9999999999999999999988876 3555  555443 345


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec---CCc--cccc---cccC--CCCC
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF---GQP--HFRR---PFFN--APQF  193 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~--~~~~---~~~~--~~~~  193 (259)
                      ++||+|++..++|++               ++.+..+.++.+.|+|||+++-..-   +.+  .+..   ..+.  ...-
T Consensus       114 ~~~DvVLa~k~LHlL---------------~~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~  178 (200)
T 3fzg_A          114 GTYDVVFLLKMLPVL---------------KQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGW  178 (200)
T ss_dssp             SEEEEEEEETCHHHH---------------HHTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTT
T ss_pred             CCcChhhHhhHHHhh---------------hhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCc
Confidence            789999999988876               5666777799999999999997541   111  1100   0100  1334


Q ss_pred             CcEEEEEEeCCeEEEE
Q 025039          194 TWSVEWITFGDGFHYF  209 (259)
Q Consensus       194 ~~~~~~~~~~~~~~~~  209 (259)
                      .|......+++...|.
T Consensus       179 ~~~~~~~~~~nEl~y~  194 (200)
T 3fzg_A          179 IKILDSKVIGNELVYI  194 (200)
T ss_dssp             SCEEEEEEETTEEEEE
T ss_pred             ceeeeeeeeCceEEEE
Confidence            5777888888876543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.65  E-value=5e-16  Score=132.10  Aligned_cols=110  Identities=15%  Similarity=0.232  Sum_probs=82.8

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC--------------C---------------
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY--------------K---------------  107 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------~---------------  107 (259)
                      .++.+|||+|||+|.....++.....+|+|+|+|+.|++.|++++.....              .               
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            36789999999999966555443333999999999999999986643110              0               


Q ss_pred             -CeEEEEcccCC-CcC-----CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          108 -EVKVLEADMLD-LPF-----SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       108 -~v~~~~~d~~~-~~~-----~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                       .+.++.+|+.+ +++     ++++||+|+++.+++++.           ....+...+++++.++|||||+|++..
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~-----------~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS-----------PDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC-----------SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhc-----------CCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence             14566778877 443     345699999999987741           124688999999999999999999974

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.65  E-value=1.6e-15  Score=119.43  Aligned_cols=111  Identities=14%  Similarity=0.212  Sum_probs=89.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCC-CcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLD-LPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~-~~~~~~~fD~V~~~~  133 (259)
                      ..++.+|||+|||+|..+..+++.+..+++++|+++.+++.+++++...++. ++.++++|+.+ ++...+.||+|+++.
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~  108 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP  108 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence            3467899999999999999999886559999999999999999999888775 58999999877 333346799999987


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHH--hcccCCcEEEEEecCCcc
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVH--RVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~~  182 (259)
                      +++                ......+++.+.  ++|+|||++++.......
T Consensus       109 ~~~----------------~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~  143 (177)
T 2esr_A          109 PYA----------------KETIVATIEALAAKNLLSEQVMVVCETDKTVL  143 (177)
T ss_dssp             SSH----------------HHHHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred             CCC----------------cchHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence            652                134456666666  999999999998765533

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.65  E-value=1.6e-15  Score=122.76  Aligned_cols=104  Identities=12%  Similarity=0.110  Sum_probs=88.2

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|.++..+++.+. +|+++|+++.+++.|+++++..+++ +++++++|+.+.......||+|++...
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~  131 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGG  131 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCc
Confidence            45788999999999999999999955 9999999999999999999988887 799999999873323357999997653


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +                   +.. +++++.++|+|||++++.....
T Consensus       132 ~-------------------~~~-~l~~~~~~LkpgG~lv~~~~~~  157 (204)
T 3njr_A          132 G-------------------SQA-LYDRLWEWLAPGTRIVANAVTL  157 (204)
T ss_dssp             C-------------------CHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred             c-------------------cHH-HHHHHHHhcCCCcEEEEEecCc
Confidence            3                   223 8999999999999999987654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.65  E-value=1.2e-15  Score=134.71  Aligned_cols=111  Identities=21%  Similarity=0.275  Sum_probs=95.2

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      ++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.+++++..+++ .++++++|+.+...++++||+|+++.++++
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANAL-KAQALHSDVDEALTEEARFDIIVTNPPFHV  310 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC-CeEEEEcchhhccccCCCeEEEEECCchhh
Confidence            678999999999999999999977 999999999999999999988876 489999999887655679999999988875


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ...          ........+++++.++|+|||.++++....
T Consensus       311 ~~~----------~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          311 GGA----------VILDVAQAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             TCS----------SCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             ccc----------ccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence            210          023678899999999999999999986544

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.65  E-value=1.1e-15  Score=124.23  Aligned_cols=114  Identities=19%  Similarity=0.295  Sum_probs=91.6

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEecc
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKA  133 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~  133 (259)
                      .++.+|||+|||+|..+..+++..+. +++|+|+++.+++.|++++...+++++.++++|+.+++  +++++||+|+++.
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~  119 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF  119 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence            35789999999999999999998755 99999999999999999998888878999999998866  6677899999864


Q ss_pred             eeeeeeeCCCCCCCCCchhH--HHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          134 TMEVLFVNSGDPWNPQPETV--TKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +.         +|....+..  .....+++.+.++|+|||.+++.+..
T Consensus       120 ~~---------~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  158 (214)
T 1yzh_A          120 SD---------PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN  158 (214)
T ss_dssp             CC---------CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred             CC---------CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence            32         232111110  12367999999999999999987643

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.64  E-value=3.9e-15  Score=120.14  Aligned_cols=101  Identities=17%  Similarity=0.187  Sum_probs=86.5

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ++.+|||+|||+|..+..++...+. +++++|+++.+++.+++++...+++++++.++|+.+.+ +.++||+|+++..  
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~--  141 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF--  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc--
Confidence            4789999999999999999987543 99999999999999999998888877999999998865 4578999997542  


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                                       .....+++.+.++|+|||.+++...
T Consensus       142 -----------------~~~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          142 -----------------ASLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             -----------------SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             -----------------CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence                             2346899999999999999998753

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.63  E-value=3.5e-16  Score=127.95  Aligned_cols=113  Identities=17%  Similarity=0.225  Sum_probs=89.8

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-c--CCCCceeEEEecc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-P--FSNDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~--~~~~~fD~V~~~~  133 (259)
                      ++.+|||+|||+|..+..+++..+. .|+|+|+++.+++.|++++...+++++.++++|+.++ +  +++++||.|+++.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            5679999999999999999998775 8999999999999999999988888899999998773 3  5678999999753


Q ss_pred             eeeeeeeCCCCCCCCCchhHH--HHHHHHHHHHhcccCCcEEEEEecC
Q 025039          134 TMEVLFVNSGDPWNPQPETVT--KVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +         ++|....+...  ....+++++.++|||||++++.+..
T Consensus       114 ~---------~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~  152 (218)
T 3dxy_A          114 P---------DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW  152 (218)
T ss_dssp             C---------CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             C---------CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence            2         22321111000  1135999999999999999998754

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.63  E-value=1.2e-15  Score=126.21  Aligned_cols=115  Identities=17%  Similarity=0.272  Sum_probs=85.0

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhh------cCCCCeEEEEcccCC-Cc--CCCCc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLL------KGYKEVKVLEADMLD-LP--FSNDC  125 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~------~~~~~v~~~~~d~~~-~~--~~~~~  125 (259)
                      ..++.+|||||||+|..+..+++..+. .++|+|+|+.+++.|++++..      .+.+++.++++|+.+ ++  +++++
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~  123 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ  123 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence            345678999999999999999998665 899999999999999987653      356689999999987 55  66789


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHH--HHHHHHHHHhcccCCcEEEEEecC
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ||.|++..+         ++|....+....  ...+++++.++|+|||.|++.+..
T Consensus       124 ~D~v~~~~~---------dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~  170 (235)
T 3ckk_A          124 LTKMFFLFP---------DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV  170 (235)
T ss_dssp             EEEEEEESC---------C-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             eeEEEEeCC---------CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence            999986322         223211111110  147999999999999999997654

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.63  E-value=5.5e-16  Score=128.44  Aligned_cols=102  Identities=13%  Similarity=0.165  Sum_probs=86.9

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC---CCceeEEEec
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS---NDCFDVVIEK  132 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~  132 (259)
                      .++.+|||+|||+|..+..++...+. +|+++|+|+.+++.+++++...++++++++++|+.+++..   .++||+|++.
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence            46789999999999999999865443 8999999999999999999988887899999998776542   5789999986


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .+                   .+...+++.+.++|+|||.+++..
T Consensus       149 ~~-------------------~~~~~~l~~~~~~LkpgG~l~~~~  174 (240)
T 1xdz_A          149 AV-------------------ARLSVLSELCLPLVKKNGLFVALK  174 (240)
T ss_dssp             CC-------------------SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cc-------------------CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            52                   235689999999999999999864

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.63  E-value=3.8e-16  Score=121.95  Aligned_cols=108  Identities=13%  Similarity=0.203  Sum_probs=85.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-c-C--CCCceeEEEe
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-P-F--SNDCFDVVIE  131 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~-~--~~~~fD~V~~  131 (259)
                      ++++.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++...+. ++++.++|+.+. + .  ..++||+|++
T Consensus        39 ~~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~  116 (171)
T 1ws6_A           39 YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEE
Confidence            33678999999999999999999988 699999999999999999988876 789999998763 2 1  1247999999


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHH--hcccCCcEEEEEecCCcc
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVH--RVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~~  182 (259)
                      +.+++ .                ...++++.+.  ++|+|||.+++.......
T Consensus       117 ~~~~~-~----------------~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          117 APPYA-M----------------DLAALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             CCCTT-S----------------CTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             CCCCc-h----------------hHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            87764 1                1123444444  999999999998766544

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.63  E-value=9.8e-16  Score=124.79  Aligned_cols=113  Identities=18%  Similarity=0.231  Sum_probs=89.8

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEecce
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKAT  134 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~  134 (259)
                      ++.+|||+|||+|..+..+++..+. +++|+|+|+.+++.|++++...+++++.++++|+.+++  +++++||.|++..+
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            5679999999999999999998654 99999999999999999998888888999999998764  56778999886432


Q ss_pred             eeeeeeCCCCCCCCCchhHH--HHHHHHHHHHhcccCCcEEEEEecC
Q 025039          135 MEVLFVNSGDPWNPQPETVT--KVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                               .+|....+...  ....+++++.++|+|||.+++.+..
T Consensus       118 ---------~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~  155 (213)
T 2fca_A          118 ---------DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN  155 (213)
T ss_dssp             ---------CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred             ---------CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence                     23322111111  1367899999999999999998643

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.63  E-value=1.6e-15  Score=119.19  Aligned_cols=105  Identities=12%  Similarity=0.228  Sum_probs=86.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCC-CcCCCCceeEEEec
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLD-LPFSNDCFDVVIEK  132 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~-~~~~~~~fD~V~~~  132 (259)
                      ..++.+|||+|||+|..+..+++..+. +++++|+++.+++.+++++...+++ ++ ++++|..+ ++...++||+|++.
T Consensus        23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~  101 (178)
T 3hm2_A           23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIG  101 (178)
T ss_dssp             CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEEC
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEEC
Confidence            456789999999999999999988544 9999999999999999999888887 68 88888754 33222789999987


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .++++                   ..+++++.++|+|||.+++.++..
T Consensus       102 ~~~~~-------------------~~~l~~~~~~L~~gG~l~~~~~~~  130 (178)
T 3hm2_A          102 GGLTA-------------------PGVFAAAWKRLPVGGRLVANAVTV  130 (178)
T ss_dssp             C-TTC-------------------TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred             CcccH-------------------HHHHHHHHHhcCCCCEEEEEeecc
Confidence            76643                   368999999999999999987654

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.63  E-value=1.9e-15  Score=126.62  Aligned_cols=123  Identities=11%  Similarity=0.147  Sum_probs=92.4

Q ss_pred             CC-CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCc--CCCCceeEEEe
Q 025039           56 IK-PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP--FSNDCFDVVIE  131 (259)
Q Consensus        56 ~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--~~~~~fD~V~~  131 (259)
                      +. ++.+|||+|||+|..+..+++.+..+|+|+|+++.+++.|++++..+++.+ ++++++|+.+..  ++.++||+|++
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~  125 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTC  125 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEE
Confidence            44 688999999999999999999876699999999999999999999888864 999999998865  44679999999


Q ss_pred             cceeeeeee-CCCCC----CCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          132 KATMEVLFV-NSGDP----WNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       132 ~~~l~~~~~-~~~~~----~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +.++..... ....+    .............+++.+.++|+|||+++++..
T Consensus       126 npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  177 (259)
T 3lpm_A          126 NPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR  177 (259)
T ss_dssp             CCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence            887643200 00000    000001224567899999999999999999753

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.63  E-value=1.1e-15  Score=133.66  Aligned_cols=107  Identities=18%  Similarity=0.277  Sum_probs=91.5

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.|++++..+++++ ++++++|+.++++++++||+|++..+
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~  142 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM  142 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence            347889999999999999999999766999999995 9999999999888866 99999999998887889999999765


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                      .+.+.            .......++..+.++|||||+++.
T Consensus       143 ~~~l~------------~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          143 GYCLF------------YESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             BBTBT------------BTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccc------------CchhHHHHHHHHHHhCCCCCEEcc
Confidence            44431            224567899999999999999873

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.62  E-value=2e-15  Score=131.46  Aligned_cols=106  Identities=18%  Similarity=0.246  Sum_probs=90.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|+++++.+++ ++++++.+|+.++++++++||+|++..+
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~  140 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  140 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence            357889999999999999999998755999999997 99999999988887 4699999999988877789999998764


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                      ...+            ........++.++.++|||||.++
T Consensus       141 ~~~l------------~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          141 GYFL------------LFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             BTTB------------TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhhc------------cCHHHHHHHHHHHHhhcCCCcEEE
Confidence            3222            123567789999999999999998

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.62  E-value=1.2e-16  Score=129.21  Aligned_cols=121  Identities=13%  Similarity=0.066  Sum_probs=71.4

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC-----CceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN-----DCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~fD~V~  130 (259)
                      .++.+|||+|||+|..+..+++.++. +++++|+++.+++.+++++...+. +++++++|+.+ +++.     ++||+|+
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~-~~~~~~~~~~~fD~i~  106 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIE-WLIERAERGRPWHAIV  106 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHH-HHHHHHHTTCCBSEEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHh-hhhhhhhccCcccEEE
Confidence            57789999999999999999999765 999999999999999999887776 78888888877 4444     7899999


Q ss_pred             ecceeeeeeeCC-----------CCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          131 EKATMEVLFVNS-----------GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       131 ~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++.++.......           ...+............+++++.++|+|||++++....
T Consensus       107 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A          107 SNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             ECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred             ECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            987764321000           0000000111223378899999999999995555443

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.61  E-value=9.3e-16  Score=125.16  Aligned_cols=102  Identities=23%  Similarity=0.313  Sum_probs=86.4

Q ss_pred             hhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEE
Q 025039           51 LVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVI  130 (259)
Q Consensus        51 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  130 (259)
                      .+....+ +.+|||+|||+|..+..+++.     +++|+++.+++.++++       ++.+.++|+.++++++++||+|+
T Consensus        41 ~l~~~~~-~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~v~  107 (219)
T 1vlm_A           41 AVKCLLP-EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFAL  107 (219)
T ss_dssp             HHHHHCC-SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEE
T ss_pred             HHHHhCC-CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-------CCEEEEcccccCCCCCCCeeEEE
Confidence            4444443 889999999999999988655     9999999999999886       47888999988887778999999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +..+++++               .+...+++++.++|+|||.+++.++..
T Consensus       108 ~~~~l~~~---------------~~~~~~l~~~~~~L~pgG~l~i~~~~~  142 (219)
T 1vlm_A          108 MVTTICFV---------------DDPERALKEAYRILKKGGYLIVGIVDR  142 (219)
T ss_dssp             EESCGGGS---------------SCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             EcchHhhc---------------cCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence            99988766               355789999999999999999987654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.61  E-value=4.7e-15  Score=130.27  Aligned_cols=109  Identities=17%  Similarity=0.241  Sum_probs=94.5

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCC--cCCCCceeEEEec
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL--PFSNDCFDVVIEK  132 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~--~~~~~~fD~V~~~  132 (259)
                      .++.+|||+|||+|..+..+++..+. +++++|+ +.+++.+++++...++. ++++..+|+.+.  +++ ++||+|++.
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~  255 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS  255 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence            35689999999999999999998766 9999999 99999999998877764 599999999885  355 689999999


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .++|++             +.++...+|+++.++|+|||++++.+...
T Consensus       256 ~vlh~~-------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  290 (363)
T 3dp7_A          256 QFLDCF-------------SEEEVISILTRVAQSIGKDSKVYIMETLW  290 (363)
T ss_dssp             SCSTTS-------------CHHHHHHHHHHHHHHCCTTCEEEEEECCT
T ss_pred             chhhhC-------------CHHHHHHHHHHHHHhcCCCcEEEEEeecc
Confidence            999876             45677899999999999999999987543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.61  E-value=1.5e-15  Score=126.67  Aligned_cols=103  Identities=16%  Similarity=0.143  Sum_probs=87.9

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC---CCceeEEEec
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS---NDCFDVVIEK  132 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~  132 (259)
                      .++.+|||+|||+|..++.++...+. +|+++|+++.+++.+++++...++.+++++++|+.+++..   .++||+|++.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            46789999999999999999987554 9999999999999999999999988899999999876532   4789999986


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .+.                   +...+++.+.++|+|||++++...
T Consensus       159 a~~-------------------~~~~ll~~~~~~LkpgG~l~~~~g  185 (249)
T 3g89_A          159 AVA-------------------PLCVLSELLLPFLEVGGAAVAMKG  185 (249)
T ss_dssp             SSC-------------------CHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CcC-------------------CHHHHHHHHHHHcCCCeEEEEEeC
Confidence            532                   345789999999999999998653

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.61  E-value=8.5e-16  Score=135.61  Aligned_cols=106  Identities=18%  Similarity=0.271  Sum_probs=90.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.|++++..+++.+ ++++++|+.+++++ ++||+|++..+
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~  138 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWM  138 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCC
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcCh
Confidence            45788999999999999999999987799999999 99999999999888765 99999999988766 78999999765


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                      .+.+            ........++..+.++|+|||++++
T Consensus       139 ~~~l------------~~e~~~~~~l~~~~~~LkpgG~li~  167 (376)
T 3r0q_C          139 GYFL------------LRESMFDSVISARDRWLKPTGVMYP  167 (376)
T ss_dssp             BTTB------------TTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred             hhcc------------cchHHHHHHHHHHHhhCCCCeEEEE
Confidence            4444            1224567899999999999999986

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.61  E-value=8.8e-15  Score=120.09  Aligned_cols=101  Identities=18%  Similarity=0.102  Sum_probs=85.4

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.++.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++...+  ++.+..+|+.+.....++||+|++..++
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~~~~~fD~v~~~~~~  144 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYEEEKPYDRVVVWATA  144 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCGGGCCEEEEEESSBB
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHcC-EEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccccCCCccEEEECCcH
Confidence            45778999999999999999999885 99999999999999999987665  7899999987732245789999999888


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +++                     .+++.++|+|||++++.....
T Consensus       145 ~~~---------------------~~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          145 PTL---------------------LCKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             SSC---------------------CHHHHHTEEEEEEEEEEECSS
T ss_pred             HHH---------------------HHHHHHHcCCCcEEEEEEcCC
Confidence            765                     136889999999999986543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.60  E-value=6.6e-15  Score=119.68  Aligned_cols=102  Identities=17%  Similarity=0.179  Sum_probs=79.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC----cCCCCceeEEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVI  130 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~  130 (259)
                      +.++.+|||+|||+|..+..+++.... +|+|+|+|+.|++.+.+.++..  .++.++.+|+...    ++. ++||+|+
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~-~~fD~V~  131 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIV-EKVDLIY  131 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTC-CCEEEEE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccc-cceeEEE
Confidence            467889999999999999999887533 8999999999887777665543  3688888888763    333 7899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ++..                 .......+++++.++|||||.+++..
T Consensus       132 ~~~~-----------------~~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          132 QDIA-----------------QKNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             ECCC-----------------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Eecc-----------------ChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            8621                 11344567999999999999999974

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.60  E-value=1.1e-15  Score=130.35  Aligned_cols=109  Identities=15%  Similarity=0.181  Sum_probs=82.6

Q ss_pred             CCCCcEEEEcCCCCcchHH----HHhcCCC-eE--EEeeCCHHHHHHHHHHHhhc-CCCCeEE--EEcccCCCc------
Q 025039           57 KPNSSVLELGCGNSRLSEG----LYNDGIT-AI--TCIDLSAVAVEKMQERLLLK-GYKEVKV--LEADMLDLP------  120 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~----l~~~~~~-~v--~~vD~s~~~~~~a~~~~~~~-~~~~v~~--~~~d~~~~~------  120 (259)
                      .++.+|||+|||+|..+..    ++..++. .+  +++|+|+.|++.+++++... +.+++.+  ..+++.+++      
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            3567999999999976543    3333332 44  99999999999999987653 4445554  344544332      


Q ss_pred             CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +++++||+|++..+++++               .++..+|++++++|||||++++...+.
T Consensus       131 ~~~~~fD~V~~~~~l~~~---------------~d~~~~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYV---------------KDIPATLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             TCCCCEEEEEEESCGGGC---------------SCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             cCCCceeEEEEeeeeeec---------------CCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            356889999999999887               567889999999999999999986543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.60  E-value=2.1e-15  Score=126.94  Aligned_cols=111  Identities=20%  Similarity=0.257  Sum_probs=90.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHH------HHHHHHHHHhhcCC-CCeEEEEcc---cCCCcCCC
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAV------AVEKMQERLLLKGY-KEVKVLEAD---MLDLPFSN  123 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~------~~~~a~~~~~~~~~-~~v~~~~~d---~~~~~~~~  123 (259)
                      +.++.+|||+|||+|..+..+++. |+. +++|+|+|+.      +++.+++++...++ +++++..+|   ...+++++
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  120 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIAD  120 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCC
Confidence            467889999999999999999988 453 9999999997      99999999887776 359999998   33455667


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      ++||+|++..+++++               .+...+++.+.++++|||.+++.++..+
T Consensus       121 ~~fD~v~~~~~l~~~---------------~~~~~~~~~~~~l~~~gG~l~~~~~~~~  163 (275)
T 3bkx_A          121 QHFDRVVLAHSLWYF---------------ASANALALLFKNMAAVCDHVDVAEWSMQ  163 (275)
T ss_dssp             CCCSEEEEESCGGGS---------------SCHHHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred             CCEEEEEEccchhhC---------------CCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence            899999999999876               2234577777788888999999877653

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.59  E-value=7.8e-15  Score=116.27  Aligned_cols=105  Identities=19%  Similarity=0.310  Sum_probs=88.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCC-CceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSN-DCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~-~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..+..+++.+ .+++++|+++.+++.+++++...+. +++.+.++|+.+ .++. ++||+|++..
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~  108 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGG  108 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECC
Confidence            4578899999999999999999988 4999999999999999999988877 568999998866 2222 5899999876


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +++                  ....+++.+.++|+|||.+++..+..
T Consensus       109 ~~~------------------~~~~~l~~~~~~l~~gG~l~~~~~~~  137 (192)
T 1l3i_A          109 SGG------------------ELQEILRIIKDKLKPGGRIIVTAILL  137 (192)
T ss_dssp             CTT------------------CHHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             chH------------------HHHHHHHHHHHhcCCCcEEEEEecCc
Confidence            653                  23689999999999999999987653

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.59  E-value=3.2e-15  Score=124.98  Aligned_cols=112  Identities=17%  Similarity=0.253  Sum_probs=92.5

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCcee
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFD  127 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  127 (259)
                      ....+...+.++.+|||+|||+|.++..+++.|. +++++|+++.+++.+++++..+++. +++.++|+.+. ++.++||
T Consensus       110 ~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~-~~~~~fD  186 (254)
T 2nxc_A          110 ALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA-LPFGPFD  186 (254)
T ss_dssp             HHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH-GGGCCEE
T ss_pred             HHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc-CcCCCCC
Confidence            3344444567789999999999999999999988 9999999999999999999888875 88889888662 3456899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +|+++...                  .....++..+.++|+|||++++..+..
T Consensus       187 ~Vv~n~~~------------------~~~~~~l~~~~~~LkpgG~lils~~~~  221 (254)
T 2nxc_A          187 LLVANLYA------------------ELHAALAPRYREALVPGGRALLTGILK  221 (254)
T ss_dssp             EEEEECCH------------------HHHHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred             EEEECCcH------------------HHHHHHHHHHHHHcCCCCEEEEEeecc
Confidence            99986543                  345789999999999999999976543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.59  E-value=3e-15  Score=126.27  Aligned_cols=105  Identities=19%  Similarity=0.327  Sum_probs=83.8

Q ss_pred             CCCcEEEEcCCCCc----chHHHHhc-CC---C-eEEEeeCCHHHHHHHHHHHhh-----------------------cC
Q 025039           58 PNSSVLELGCGNSR----LSEGLYND-GI---T-AITCIDLSAVAVEKMQERLLL-----------------------KG  105 (259)
Q Consensus        58 ~~~~vLDiGcG~G~----~~~~l~~~-~~---~-~v~~vD~s~~~~~~a~~~~~~-----------------------~~  105 (259)
                      ++.+|||+|||+|.    +++.+++. +.   . +|+|+|+|+.|++.|+++.-.                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    56666665 31   2 899999999999999987410                       00


Q ss_pred             -C-------CCeEEEEcccCCCcCC-CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          106 -Y-------KEVKVLEADMLDLPFS-NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       106 -~-------~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                       +       ..+.|.++|+.+.+++ .+.||+|+|.+++.++             ..+...++++++.++|+|||+|++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf-------------~~~~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-------------DKTTQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-------------CHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhC-------------CHHHHHHHHHHHHHHhCCCcEEEE
Confidence             0       2588999999885554 4689999999998877             456778999999999999999987

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.59  E-value=1.1e-14  Score=118.17  Aligned_cols=104  Identities=22%  Similarity=0.140  Sum_probs=86.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcC-C-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDG-I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..+..+++.+ + .+++++|+++.+++.+++++...+++++.+..+|+.......++||+|++..
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  154 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTA  154 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECC
Confidence            4578899999999999999999886 3 3999999999999999999988887789999999855322356899999998


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +++++                     .+++.++|+|||.+++.....
T Consensus       155 ~~~~~---------------------~~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          155 AGPKI---------------------PEPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             BBSSC---------------------CHHHHHTEEEEEEEEEEESSS
T ss_pred             chHHH---------------------HHHHHHHcCCCcEEEEEECCC
Confidence            88765                     147899999999999976543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.59  E-value=1.2e-14  Score=119.33  Aligned_cols=118  Identities=10%  Similarity=0.129  Sum_probs=91.7

Q ss_pred             ccccchHHHHhhc-----ccCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE
Q 025039           41 WLKDYSHFRHLVQ-----PHIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLE  113 (259)
Q Consensus        41 w~~~~~~~~~~l~-----~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~  113 (259)
                      |-...+.+...+.     ..++||.+|||+|||+|..+..+++. |+. +|+++|+++.|++.+++++...  +++..+.
T Consensus        55 w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~  132 (233)
T 4df3_A           55 WNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPIL  132 (233)
T ss_dssp             CCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEE
T ss_pred             ECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEE
Confidence            5555555554433     23579999999999999999999987 665 9999999999999999987755  4788888


Q ss_pred             cccCCC---cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          114 ADMLDL---PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       114 ~d~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +|....   +...+++|+|++....                 ..+...++.++.+.|||||.++++.
T Consensus       133 ~d~~~p~~~~~~~~~vDvVf~d~~~-----------------~~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          133 GDARFPEKYRHLVEGVDGLYADVAQ-----------------PEQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             SCTTCGGGGTTTCCCEEEEEECCCC-----------------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeccCccccccccceEEEEEEeccC-----------------ChhHHHHHHHHHHhccCCCEEEEEE
Confidence            887653   3455789998864221                 1456789999999999999999864

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.59  E-value=6.3e-15  Score=128.49  Aligned_cols=110  Identities=24%  Similarity=0.349  Sum_probs=92.2

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ++.+|||+|||+|.++..+++.++. +++++|+|+.+++.+++++...+. .+.+..+|+.+..  .++||+|+++.+++
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~fD~Iv~~~~~~  272 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-EGEVFASNVFSEV--KGRFDMIISNPPFH  272 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTC--CSCEEEEEECCCCC
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCEEEEccccccc--cCCeeEEEECCCcc
Confidence            5679999999999999999999875 999999999999999999988775 4677888887643  56899999999887


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +...          .+......+++++.++|+|||.++++....
T Consensus       273 ~g~~----------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          273 DGMQ----------TSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             SSSH----------HHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             cCcc----------CCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence            4210          134567899999999999999999987654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.59  E-value=4.1e-15  Score=121.40  Aligned_cols=101  Identities=26%  Similarity=0.438  Sum_probs=86.2

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC--CcCCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--LPFSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~V~~~~~  134 (259)
                      .++.+|||+|||+|..+..+++.+. +++++|+++.+++.++++.       ..+..+|+.+  .++++++||+|++..+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~fD~v~~~~~  102 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGT-RVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMPYEEEQFDCVIFGDV  102 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTC-EEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCCCCCCccCEEEECCh
Confidence            4778999999999999999999864 9999999999999998753       3678888876  4566789999999988


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++++               .+...+++++.++|+|||.+++..+..
T Consensus       103 l~~~---------------~~~~~~l~~~~~~L~~gG~l~~~~~~~  133 (230)
T 3cc8_A          103 LEHL---------------FDPWAVIEKVKPYIKQNGVILASIPNV  133 (230)
T ss_dssp             GGGS---------------SCHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred             hhhc---------------CCHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            8776               345689999999999999999987654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.59  E-value=5.9e-15  Score=130.06  Aligned_cols=113  Identities=18%  Similarity=0.223  Sum_probs=90.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC---CeEEEEcccCCCcCCCCceeEEEecc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK---EVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~---~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      ++.+|||+|||+|.++..+++.++. +|+++|+|+.+++.+++++..+++.   ++++..+|+.+ .++.++||+|+++.
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~np  300 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNP  300 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECC
T ss_pred             CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECC
Confidence            4589999999999999999999754 9999999999999999999888764   47889999987 44567899999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      +++.....          ......++++++.++|+|||.++++.....
T Consensus       301 pfh~~~~~----------~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~  338 (375)
T 4dcm_A          301 PFHQQHAL----------TDNVAWEMFHHARRCLKINGELYIVANRHL  338 (375)
T ss_dssp             CC-----------------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             CcccCccc----------CHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence            88643100          112345789999999999999999876543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.58  E-value=8.6e-15  Score=126.80  Aligned_cols=110  Identities=15%  Similarity=0.257  Sum_probs=95.0

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .++.+|||+|||+|..+..+++..+. +++++|++ .+++.+++++...++.+ +++..+|+.+.+++. .||+|++..+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~v~~~~~  241 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGN-DYDLVLLPNF  241 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCS-CEEEEEEESC
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCC-CCcEEEEcch
Confidence            56789999999999999999998554 99999999 99999999988777654 999999998866554 4999999999


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      ++++             +.++...+++++.++|+|||++++.++..+
T Consensus       242 l~~~-------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  275 (335)
T 2r3s_A          242 LHHF-------------DVATCEQLLRKIKTALAVEGKVIVFDFIPN  275 (335)
T ss_dssp             GGGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred             hccC-------------CHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence            8876             456778999999999999999999876543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.58  E-value=7.2e-17  Score=133.56  Aligned_cols=102  Identities=20%  Similarity=0.210  Sum_probs=85.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.|++++...++ +++.++++|+.+++ +.++||+|+++.+++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~  155 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG  155 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred             CCCEEEECccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence            688999999999999999999985 999999999999999999998887 46999999998866 457899999998887


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      +.               ......+.++.++|+|||.+++.
T Consensus       156 ~~---------------~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          156 GP---------------DYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             SG---------------GGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             Cc---------------chhhhHHHHHHhhcCCcceeHHH
Confidence            54               22223566778888888886653

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.58  E-value=1.1e-14  Score=126.15  Aligned_cols=107  Identities=17%  Similarity=0.225  Sum_probs=92.8

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +..+|||+|||+|..+..+++..+. +++++|+ +.+++.+++++...++ +++++..+|+.+ +.+. +||+|++..++
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p~-~~D~v~~~~vl  245 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLPA-GAGGYVLSAVL  245 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCCC-SCSEEEEESCG
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCCC-CCcEEEEehhh
Confidence            4679999999999999999998766 8999999 9999999999887776 359999999973 4444 79999999999


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      |++             +.+...+++++++++|+|||++++.+...
T Consensus       246 h~~-------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  277 (332)
T 3i53_A          246 HDW-------------DDLSAVAILRRCAEAAGSGGVVLVIEAVA  277 (332)
T ss_dssp             GGS-------------CHHHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred             ccC-------------CHHHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence            887             44567899999999999999999987654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.58  E-value=8.8e-15  Score=126.12  Aligned_cols=125  Identities=20%  Similarity=0.224  Sum_probs=92.3

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      ..++.+|||+|||+|..+..+++...  .+|+++|+++.+++.+++++...+++++.++++|+.+++...++||+|++..
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~  195 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA  195 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence            46788999999999999999998642  3899999999999999999999888789999999988654456899999854


Q ss_pred             ee---eeeeeCCCCCCCCCchh----HHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          134 TM---EVLFVNSGDPWNPQPET----VTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       134 ~l---~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +.   ..+...+...|.-.++.    .....++++++.++|||||++++.+++.
T Consensus       196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            31   11111111112111111    1223689999999999999999988754

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.58  E-value=2.2e-15  Score=122.72  Aligned_cols=102  Identities=20%  Similarity=0.333  Sum_probs=84.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC---cCC-CCceeEEEecc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL---PFS-NDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~~~-~~~fD~V~~~~  133 (259)
                      ++.+|||+|||+|..+..+++.+. +++|+|+++.+++.++++      .++.+...|+.++   +.. ..+||+|++..
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~  124 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPVGKDYDLICANF  124 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccccccCCCccEEEECc
Confidence            568999999999999999999977 999999999999999987      2567777777665   333 34599999988


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      +++ .               .+...+++++.++|+|||++++.++....
T Consensus       125 ~l~-~---------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  157 (227)
T 3e8s_A          125 ALL-H---------------QDIIELLSAMRTLLVPGGALVIQTLHPWS  157 (227)
T ss_dssp             CCC-S---------------SCCHHHHHHHHHTEEEEEEEEEEECCTTT
T ss_pred             hhh-h---------------hhHHHHHHHHHHHhCCCeEEEEEecCccc
Confidence            886 3               34568999999999999999998876543

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.58  E-value=9.5e-15  Score=137.37  Aligned_cols=108  Identities=18%  Similarity=0.299  Sum_probs=92.9

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhh------cCCCCeEEEEcccCCCcCCCCceeEE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLL------KGYKEVKVLEADMLDLPFSNDCFDVV  129 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~------~~~~~v~~~~~d~~~~~~~~~~fD~V  129 (259)
                      ++.+|||+|||+|.++..+++.+.  .+|+|+|+|+.|++.|++++..      .+.+++++.++|+.++++.+++||+|
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV  800 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG  800 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence            678999999999999999999983  3999999999999999986653      25567999999999988888899999


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++..+++|+             .......+++++.++|||| .+++.++.
T Consensus       801 V~~eVLeHL-------------~dp~l~~~L~eI~RvLKPG-~LIISTPN  836 (950)
T 3htx_A          801 TCLEVIEHM-------------EEDQACEFGEKVLSLFHPK-LLIVSTPN  836 (950)
T ss_dssp             EEESCGGGS-------------CHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred             EEeCchhhC-------------ChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence            999999987             3455668999999999999 77776543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.57  E-value=6.3e-15  Score=127.75  Aligned_cols=105  Identities=22%  Similarity=0.338  Sum_probs=88.8

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .++.+|||+|||+|.++..+++.|..+|+|+|++ .+++.|++++..+++.+ ++++.+|+.+++++.++||+|++..+.
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence            4678999999999999999999876699999999 59999999998888754 999999999887777899999997654


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                      +.+.            ....+..++..+.++|+|||.++
T Consensus       116 ~~l~------------~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          116 YFLL------------YESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTBS------------TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             hhcc------------cHHHHHHHHHHHHhhcCCCeEEE
Confidence            4431            22356688999999999999997

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.57  E-value=9.8e-15  Score=128.31  Aligned_cols=110  Identities=12%  Similarity=0.080  Sum_probs=87.9

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHH-------hhcCC--CCeEEEEcccCCCcCCC-
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERL-------LLKGY--KEVKVLEADMLDLPFSN-  123 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~-------~~~~~--~~v~~~~~d~~~~~~~~-  123 (259)
                      .+.++.+|||+|||+|.+++.++.. +..+++|+|+++.+++.|+++.       ...++  .+++++++|+.++++.+ 
T Consensus       170 ~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~  249 (438)
T 3uwp_A          170 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER  249 (438)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccc
Confidence            3568899999999999999999865 4336999999999999998754       33344  46999999999877543 


Q ss_pred             -CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          124 -DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       124 -~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                       ..||+|+++.++. .               .+....|.++.+.|||||+|++.+...
T Consensus       250 ~~~aDVVf~Nn~~F-~---------------pdl~~aL~Ei~RvLKPGGrIVssE~f~  291 (438)
T 3uwp_A          250 IANTSVIFVNNFAF-G---------------PEVDHQLKERFANMKEGGRIVSSKPFA  291 (438)
T ss_dssp             HHTCSEEEECCTTC-C---------------HHHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred             cCCccEEEEccccc-C---------------chHHHHHHHHHHcCCCCcEEEEeeccc
Confidence             4799999876642 1               577788899999999999999876543

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.57  E-value=1.9e-14  Score=126.15  Aligned_cols=110  Identities=13%  Similarity=0.198  Sum_probs=94.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      ..++.+|||+|||+|..+..+++..+. +++++|+ +.+++.+++++...++++ +++..+|+.+.+++.  +|+|++..
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~v~~~~  264 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCR  264 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC--CSEEEEES
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC--CCEEEEec
Confidence            356789999999999999999998765 9999999 999999999998877765 999999998876553  49999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      +++++             ..+....+++++.++|+|||++++.++..+
T Consensus       265 vlh~~-------------~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~  299 (359)
T 1x19_A          265 ILYSA-------------NEQLSTIMCKKAFDAMRSGGRLLILDMVID  299 (359)
T ss_dssp             CGGGS-------------CHHHHHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred             hhccC-------------CHHHHHHHHHHHHHhcCCCCEEEEEecccC
Confidence            99876             345688999999999999999999876543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.57  E-value=1.5e-14  Score=122.09  Aligned_cols=107  Identities=20%  Similarity=0.150  Sum_probs=91.0

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      ..+.++.+|||+|||+|.++..+++.+.. +|+++|+++.+++.|+++++.++++++.++++|+.+.+. .++||+|+++
T Consensus       115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d  193 (272)
T 3a27_A          115 FISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMG  193 (272)
T ss_dssp             TSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEEC
T ss_pred             HhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEEC
Confidence            34677899999999999999999998544 999999999999999999999998889999999988733 5689999987


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .+.                   ...+++..+.+.|+|||++++.++..
T Consensus       194 ~p~-------------------~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          194 YVH-------------------KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             CCS-------------------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             Ccc-------------------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            653                   22468899999999999999877644

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.57  E-value=1.7e-14  Score=126.95  Aligned_cols=107  Identities=23%  Similarity=0.337  Sum_probs=92.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..+..+++..+. +++++|+ +.+++.+++++...++. ++++..+|+.+ +++. .||+|++..
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~  256 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSF  256 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEES
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEec
Confidence            356789999999999999999998765 9999999 99999999998887775 59999999976 3333 499999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +++++             .......+++++.++|+|||++++.++
T Consensus       257 vl~~~-------------~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          257 VLLNW-------------SDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             CGGGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccCC-------------CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            99876             345567899999999999999999877

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.57  E-value=1.1e-14  Score=121.34  Aligned_cols=117  Identities=16%  Similarity=0.198  Sum_probs=88.1

Q ss_pred             CCCcEEEEcCCCCcchHHHHhc--CCC-eEEEeeCCHHHHHHHHHHHhhc---CCCC-----------------------
Q 025039           58 PNSSVLELGCGNSRLSEGLYND--GIT-AITCIDLSAVAVEKMQERLLLK---GYKE-----------------------  108 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~--~~~-~v~~vD~s~~~~~~a~~~~~~~---~~~~-----------------------  108 (259)
                      ++.+|||+|||+|.++..+++.  ... +|+|+|+|+.+++.|++++...   ++.+                       
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            5679999999999999999887  333 8999999999999999887654   3321                       


Q ss_pred             ---eE-------------EEEcccCCCcC-----CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcc
Q 025039          109 ---VK-------------VLEADMLDLPF-----SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVL  167 (259)
Q Consensus       109 ---v~-------------~~~~d~~~~~~-----~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L  167 (259)
                         ++             +.++|+.+...     ...+||+|+++.++.....     |.. .........+++++.++|
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~-----~~~-~~~~~~~~~~l~~~~~~L  204 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTH-----WEG-QVPGQPVAGLLRSLASAL  204 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSS-----SSS-CCCHHHHHHHHHHHHHHS
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeecccc-----ccc-cccccHHHHHHHHHHHhc
Confidence               55             88999877431     3348999999887654310     100 013467789999999999


Q ss_pred             cCCcEEEEEecCC
Q 025039          168 KPDGLFISVSFGQ  180 (259)
Q Consensus       168 kpgG~l~~~~~~~  180 (259)
                      +|||+++++....
T Consensus       205 kpgG~l~~~~~~~  217 (250)
T 1o9g_A          205 PAHAVIAVTDRSR  217 (250)
T ss_dssp             CTTCEEEEEESSS
T ss_pred             CCCcEEEEeCcch
Confidence            9999999965544

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.57  E-value=1.3e-14  Score=121.75  Aligned_cols=123  Identities=16%  Similarity=0.137  Sum_probs=90.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhh---cCCCC-eEEEEcccCCC-------cCCC
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLL---KGYKE-VKVLEADMLDL-------PFSN  123 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~---~~~~~-v~~~~~d~~~~-------~~~~  123 (259)
                      ..++.+|||+|||+|..+..+++.++. +++++|+++.+++.|++++..   +++.+ +.++++|+.+.       .++.
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence            346789999999999999999998765 999999999999999999988   77753 99999999886       2456


Q ss_pred             CceeEEEecceeeeeeeCC-CCC--CCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          124 DCFDVVIEKATMEVLFVNS-GDP--WNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~-~~~--~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ++||+|+++.++...-... ...  .............+++.+.++|+|||.++++..
T Consensus       114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  171 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR  171 (260)
T ss_dssp             TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            7899999997764320000 000  000000112357889999999999999998654

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.57  E-value=1.5e-14  Score=118.39  Aligned_cols=109  Identities=16%  Similarity=0.153  Sum_probs=88.8

Q ss_pred             HhhcccCCCCCcEEEEcCCCCcchHHHHhcCC-----C-eEEEeeCCHHHHHHHHHHHhhcC-----CCCeEEEEcccCC
Q 025039           50 HLVQPHIKPNSSVLELGCGNSRLSEGLYNDGI-----T-AITCIDLSAVAVEKMQERLLLKG-----YKEVKVLEADMLD  118 (259)
Q Consensus        50 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-----~-~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~  118 (259)
                      ..+...+.++.+|||+|||+|..+..+++.+.     . +|+++|+++.+++.+++++...+     .+++.+..+|+.+
T Consensus        72 ~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  151 (227)
T 2pbf_A           72 KRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQ  151 (227)
T ss_dssp             HHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGG
T ss_pred             HHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHh
Confidence            33333467789999999999999999998753     3 89999999999999999988776     4679999999887


Q ss_pred             Cc----CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          119 LP----FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       119 ~~----~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ..    ...++||+|++..+++++                     ++.+.++|+|||++++....
T Consensus       152 ~~~~~~~~~~~fD~I~~~~~~~~~---------------------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          152 VNEEEKKELGLFDAIHVGASASEL---------------------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             CCHHHHHHHCCEEEEEECSBBSSC---------------------CHHHHHHEEEEEEEEEEEEE
T ss_pred             cccccCccCCCcCEEEECCchHHH---------------------HHHHHHhcCCCcEEEEEEcc
Confidence            54    445789999998776543                     47788999999999987543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.57  E-value=2.7e-14  Score=125.71  Aligned_cols=108  Identities=17%  Similarity=0.257  Sum_probs=93.4

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .++.+|||+|||+|..+..+++..+. +++++|+ +.+++.+++++...++. ++++..+|+.+ +.+. .||+|++..+
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~p~-~~D~v~~~~v  277 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TIPD-GADVYLIKHV  277 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCCS-SCSEEEEESC
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CCCC-CceEEEhhhh
Confidence            46789999999999999999998766 9999999 99999999998877753 59999999983 4454 7999999999


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++++             +.....++++++.++|+|||++++.+...
T Consensus       278 lh~~-------------~d~~~~~~L~~~~~~L~pgG~l~i~e~~~  310 (369)
T 3gwz_A          278 LHDW-------------DDDDVVRILRRIATAMKPDSRLLVIDNLI  310 (369)
T ss_dssp             GGGS-------------CHHHHHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred             hccC-------------CHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            9877             44566789999999999999999987643

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.57  E-value=1.6e-14  Score=120.00  Aligned_cols=113  Identities=19%  Similarity=0.344  Sum_probs=86.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhc--------CCCCeEEEEcccCC-Cc--CCC
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLK--------GYKEVKVLEADMLD-LP--FSN  123 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~--------~~~~v~~~~~d~~~-~~--~~~  123 (259)
                      +.++.+|||+|||+|.++..+++.++. +++|+|+|+.+++.+++++...        +++++.++++|+.+ ++  ++.
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence            446789999999999999999999875 8999999999999999988766        67789999999987 44  556


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHH--HHHHHHHHHHhcccCCcEEEEEe
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVT--KVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +++|.|+...         .++|........  ....++.++.++|+|||.+++.+
T Consensus       127 ~~~d~v~~~~---------p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          127 GQLSKMFFCF---------PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             TCEEEEEEES---------CCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccCEEEEEC---------CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence            7899887431         122321100000  01479999999999999999965

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.57  E-value=2e-14  Score=117.61  Aligned_cols=109  Identities=18%  Similarity=0.177  Sum_probs=88.0

Q ss_pred             HhhcccCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcC-----CCCeEEEEcccCCCcCC
Q 025039           50 HLVQPHIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKG-----YKEVKVLEADMLDLPFS  122 (259)
Q Consensus        50 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~  122 (259)
                      ..+...+.++.+|||+|||+|..+..+++. ++. +|+++|+++.+++.+++++...+     .+++.+..+|+......
T Consensus        69 ~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  148 (226)
T 1i1n_A           69 ELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE  148 (226)
T ss_dssp             HHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG
T ss_pred             HHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc
Confidence            333334667899999999999999999887 443 99999999999999999987754     34789999998765544


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .++||+|++..+++++                     ++++.++|+|||++++....
T Consensus       149 ~~~fD~i~~~~~~~~~---------------------~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          149 EAPYDAIHVGAAAPVV---------------------PQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             GCCEEEEEECSBBSSC---------------------CHHHHHTEEEEEEEEEEESC
T ss_pred             CCCcCEEEECCchHHH---------------------HHHHHHhcCCCcEEEEEEec
Confidence            6789999988776543                     46788999999999997654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.56  E-value=8.5e-15  Score=120.69  Aligned_cols=103  Identities=17%  Similarity=0.290  Sum_probs=86.2

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCC-c-CCCCceeEEEec
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-FSNDCFDVVIEK  132 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-~~~~~fD~V~~~  132 (259)
                      .++.+|||+|||+|..+..+++..+. +|+++|+++.+++.|++++...++. +++++++|+.+. + ...++||+|++.
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~  149 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID  149 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence            36789999999999999999996544 9999999999999999999988875 699999999774 2 225789999975


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ...                  .....+++.+.++|+|||++++..
T Consensus       150 ~~~------------------~~~~~~l~~~~~~LkpgG~lv~d~  176 (232)
T 3ntv_A          150 AAK------------------AQSKKFFEIYTPLLKHQGLVITDN  176 (232)
T ss_dssp             TTS------------------SSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CcH------------------HHHHHHHHHHHHhcCCCeEEEEee
Confidence            432                  345679999999999999998843

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.56  E-value=9.1e-15  Score=121.85  Aligned_cols=104  Identities=21%  Similarity=0.326  Sum_probs=88.5

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEec
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      +.++.+|||+|||+|.++..+++. ++. +++++|+++.+++.|+++++..++++ +++.++|+.+. ++.++||+|+++
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~~  169 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDHVILD  169 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEEEEEC
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCEEEEC
Confidence            457889999999999999999998 544 99999999999999999999888877 99999999864 556789999974


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ..                    +...+++++.++|+|||.+++.....
T Consensus       170 ~~--------------------~~~~~l~~~~~~L~~gG~l~~~~~~~  197 (255)
T 3mb5_A          170 LP--------------------QPERVVEHAAKALKPGGFFVAYTPCS  197 (255)
T ss_dssp             SS--------------------CGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             CC--------------------CHHHHHHHHHHHcCCCCEEEEEECCH
Confidence            22                    22468999999999999999987543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.56  E-value=1.1e-14  Score=119.46  Aligned_cols=99  Identities=17%  Similarity=0.288  Sum_probs=82.9

Q ss_pred             HhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEccc-CCCcCC-CCcee
Q 025039           50 HLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM-LDLPFS-NDCFD  127 (259)
Q Consensus        50 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~-~~~fD  127 (259)
                      .++...+.++.+|||+|||+|..+..+++.+. +|+++|+|+.+++.++++     .++++++++|+ ..++++ +++||
T Consensus        40 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~~~~fD  113 (226)
T 3m33_A           40 LWLSRLLTPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAGLGAPFG  113 (226)
T ss_dssp             HHHHHHCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTTCCCCEE
T ss_pred             HHHHhcCCCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCcCCCCEE
Confidence            44444567889999999999999999999976 999999999999999988     24789999999 456766 78999


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                      +|+++.                     +...+++++.++|||||.++.
T Consensus       114 ~v~~~~---------------------~~~~~l~~~~~~LkpgG~l~~  140 (226)
T 3m33_A          114 LIVSRR---------------------GPTSVILRLPELAAPDAHFLY  140 (226)
T ss_dssp             EEEEES---------------------CCSGGGGGHHHHEEEEEEEEE
T ss_pred             EEEeCC---------------------CHHHHHHHHHHHcCCCcEEEE
Confidence            999862                     123678899999999999993

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.56  E-value=1.8e-14  Score=121.81  Aligned_cols=108  Identities=16%  Similarity=0.170  Sum_probs=88.3

Q ss_pred             CCCcEEEEcCCC---CcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----------CC
Q 025039           58 PNSSVLELGCGN---SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----------FS  122 (259)
Q Consensus        58 ~~~~vLDiGcG~---G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----------~~  122 (259)
                      +..+|||+|||+   |..+..+.+..+. +|+++|+|+.|++.+++++...  ++++++++|+.+..           ++
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~--~~v~~~~~D~~~~~~~~~~~~~~~~~d  154 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD--PNTAVFTADVRDPEYILNHPDVRRMID  154 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC--TTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC--CCeEEEEeeCCCchhhhccchhhccCC
Confidence            347999999999   9887777666554 9999999999999999988542  46999999997631           22


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ..+||+|++..++|++             ...+...+++++.++|+|||+|++.++..
T Consensus       155 ~~~~d~v~~~~vlh~~-------------~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          155 FSRPAAIMLVGMLHYL-------------SPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             TTSCCEEEETTTGGGS-------------CTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             CCCCEEEEEechhhhC-------------CcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            3479999999999987             22257899999999999999999987764

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.56  E-value=1.1e-14  Score=126.23  Aligned_cols=117  Identities=17%  Similarity=0.168  Sum_probs=91.1

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCCCcC----CCCceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLPF----SNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~----~~~~fD~V~  130 (259)
                      .++.+|||+|||+|..++.++..|. +|+++|+|+.+++.|++++..+++.+  +.++++|+.+...    ..++||+|+
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            4678999999999999999999888 99999999999999999999888764  8999999877431    146899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++.+....... ...    .....+...++..+.++|+|||.+++....
T Consensus       231 ~dPP~~~~~~~-~~~----~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          231 TDPPKFGRGTH-GEV----WQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             ECCCSEEECTT-CCE----EEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             ECCccccCCch-HHH----HHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence            97663221000 000    023467789999999999999997775543

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.56  E-value=3.7e-14  Score=116.94  Aligned_cols=103  Identities=25%  Similarity=0.226  Sum_probs=85.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC-CceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN-DCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|..+..+++.+..+|+++|+++.+++.+++++...+++++.+..+|+. .+++. ..||+|++..+
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~Ii~~~~  167 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-KGFPPKAPYDVIIVTAG  167 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GCCGGGCCEEEEEECSB
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-cCCCCCCCccEEEECCc
Confidence            45788999999999999999998863489999999999999999998888878999999973 23333 35999999888


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++++                     .+++.++|+|||++++.....
T Consensus       168 ~~~~---------------------~~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          168 APKI---------------------PEPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             BSSC---------------------CHHHHHTEEEEEEEEEEECSS
T ss_pred             HHHH---------------------HHHHHHhcCCCcEEEEEEecC
Confidence            7654                     136789999999999976543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.55  E-value=1.9e-14  Score=124.13  Aligned_cols=102  Identities=17%  Similarity=0.105  Sum_probs=87.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|.++..+++.+..  +|+++|+++.+++.|++++...+++++.+..+|+.+.....++||+|++..
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~  152 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTV  152 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcC
Confidence            457899999999999999999988651  599999999999999999998888789999999987544457899999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +++++             .        +.+.++|||||++++...
T Consensus       153 ~~~~~-------------~--------~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          153 GVDEV-------------P--------ETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             BBSCC-------------C--------HHHHHHEEEEEEEEEEBC
T ss_pred             CHHHH-------------H--------HHHHHhcCCCcEEEEEEC
Confidence            88766             1        467889999999998753

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.55  E-value=3.3e-15  Score=121.66  Aligned_cols=111  Identities=17%  Similarity=0.221  Sum_probs=82.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHH----HHHhhcCCCCeEEEEcccCCCcCCCCceeEEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQ----ERLLLKGYKEVKVLEADMLDLPFSNDCFDVVI  130 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~----~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  130 (259)
                      ..++.+|||+|||+|..+..+++.++. +|+|+|+|+.|++.+.    ++....+.+++.+.++|+.++++.++. |.|+
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~  103 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH  103 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence            457889999999999999999998654 9999999999888643    333445667899999999998877666 8777


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ...+.....          .+...+...+++++.++|||||.+++..
T Consensus       104 ~~~~~~~~~----------~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          104 VLMPWGSLL----------RGVLGSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             EESCCHHHH----------HHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEccchhhh----------hhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence            332211100          0011223689999999999999999853

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.55  E-value=1.5e-14  Score=126.35  Aligned_cols=104  Identities=17%  Similarity=0.293  Sum_probs=87.9

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .++.+|||+|||+|.++..+++.+..+|+++|+|+ +++.|+++++.+++ ++++++.+|+.+++.+ ++||+|++..++
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~  126 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMG  126 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCB
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCch
Confidence            46789999999999999999998766999999996 88999999988887 4699999999887655 689999998877


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                      +++             ..+.....+..+.++|+|||.+++
T Consensus       127 ~~~-------------~~~~~~~~l~~~~~~LkpgG~li~  153 (348)
T 2y1w_A          127 YML-------------FNERMLESYLHAKKYLKPSGNMFP  153 (348)
T ss_dssp             TTB-------------TTTSHHHHHHHGGGGEEEEEEEES
T ss_pred             hcC-------------ChHHHHHHHHHHHhhcCCCeEEEE
Confidence            665             123455677889999999999985

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.55  E-value=2.4e-14  Score=124.94  Aligned_cols=107  Identities=15%  Similarity=0.275  Sum_probs=93.0

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCc-CCCCceeEEEeccee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP-FSNDCFDVVIEKATM  135 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~~~~fD~V~~~~~l  135 (259)
                      +.+|||+|||+|..+..+++..+. +++++|+ +.+++.+++++...+..+ +++..+|+.+.+ +..+.||+|++..++
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl  258 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL  258 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence            789999999999999999998766 9999999 889999999988777654 999999998865 134569999999999


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |++             +.++...+++++.++|+|||++++.++.
T Consensus       259 h~~-------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (352)
T 3mcz_A          259 HYF-------------DAREAREVIGHAAGLVKPGGALLILTMT  289 (352)
T ss_dssp             GGS-------------CHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ccC-------------CHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            877             4566789999999999999999998754

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.55  E-value=4.9e-14  Score=115.89  Aligned_cols=101  Identities=14%  Similarity=0.195  Sum_probs=82.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC----CcCCCCceeEEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----LPFSNDCFDVVI  130 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~V~  130 (259)
                      +.++.+|||+|||+|..+..+++... .+|+++|+|+.+++.+++++...  +++.++.+|+.+    .++. ++||+|+
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~-~~~D~v~  148 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIV-EKVDVIY  148 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTS-CCEEEEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccC-ccEEEEE
Confidence            45778999999999999999998843 39999999999999999987655  579999999987    5555 6899998


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ..     +            ........+++++.++|+|||.+++.
T Consensus       149 ~~-----~------------~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          149 ED-----V------------AQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EC-----C------------CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             Ee-----c------------CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            32     1            02234567899999999999999996

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.55  E-value=2.6e-14  Score=120.56  Aligned_cols=110  Identities=14%  Similarity=0.171  Sum_probs=92.2

Q ss_pred             HhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeE
Q 025039           50 HLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDV  128 (259)
Q Consensus        50 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~  128 (259)
                      ..+...+.++.+|||+|||+|.+++.++..|..+|+++|+++.+++.++++++.+++.+ ++++++|..++. ..+.||.
T Consensus       117 ~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~  195 (278)
T 3k6r_A          117 VRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADR  195 (278)
T ss_dssp             HHHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEE
T ss_pred             HHHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCE
Confidence            34455677899999999999999999999986699999999999999999999999876 999999998876 3468999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |+++.+..                   ..+++..+.++|+|||++.+.++.
T Consensus       196 Vi~~~p~~-------------------~~~~l~~a~~~lk~gG~ih~~~~~  227 (278)
T 3k6r_A          196 ILMGYVVR-------------------THEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             EEECCCSS-------------------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEECCCCc-------------------HHHHHHHHHHHcCCCCEEEEEeee
Confidence            99765432                   135788888999999999876653

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.54  E-value=3.3e-14  Score=111.83  Aligned_cols=103  Identities=14%  Similarity=0.224  Sum_probs=86.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      ..++.+|||+|||+|..+..+++.+. +++++|+++.+++.+++++...+++++.+.++|+.+ +++.++||+|++..+ 
T Consensus        33 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~-  109 (183)
T 2yxd_A           33 LNKDDVVVDVGCGSGGMTVEIAKRCK-FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT-  109 (183)
T ss_dssp             CCTTCEEEEESCCCSHHHHHHHTTSS-EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC-
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc-
Confidence            35678999999999999999998433 999999999999999999998887779999999877 555578999998766 


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      +                  ....+++.+.++  |||.+++..+...
T Consensus       110 ~------------------~~~~~l~~~~~~--~gG~l~~~~~~~~  135 (183)
T 2yxd_A          110 K------------------NIEKIIEILDKK--KINHIVANTIVLE  135 (183)
T ss_dssp             S------------------CHHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred             c------------------cHHHHHHHHhhC--CCCEEEEEecccc
Confidence            2                  235788888888  9999999876543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.54  E-value=2.7e-14  Score=119.94  Aligned_cols=108  Identities=25%  Similarity=0.418  Sum_probs=87.6

Q ss_pred             HHHhhcccC-CCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCc
Q 025039           48 FRHLVQPHI-KPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDC  125 (259)
Q Consensus        48 ~~~~l~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  125 (259)
                      +...+...+ .++.+|||+|||+|..+..+++..+ .+++++|+++.+++.++++.     +++.+..+|+.++++++++
T Consensus        74 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~  148 (269)
T 1p91_A           74 IVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDTS  148 (269)
T ss_dssp             HHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTTC
T ss_pred             HHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCCCCCc
Confidence            344444433 5678999999999999999998732 29999999999999998874     3688999999888877789


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      ||+|++..+.                      ..++++.++|+|||.+++.++...+
T Consensus       149 fD~v~~~~~~----------------------~~l~~~~~~L~pgG~l~~~~~~~~~  183 (269)
T 1p91_A          149 MDAIIRIYAP----------------------CKAEELARVVKPGGWVITATPGPRH  183 (269)
T ss_dssp             EEEEEEESCC----------------------CCHHHHHHHEEEEEEEEEEEECTTT
T ss_pred             eeEEEEeCCh----------------------hhHHHHHHhcCCCcEEEEEEcCHHH
Confidence            9999985432                      2578999999999999999876544

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.54  E-value=2.5e-14  Score=119.13  Aligned_cols=104  Identities=19%  Similarity=0.206  Sum_probs=85.9

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCC-CcC--CCCceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLD-LPF--SNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~-~~~--~~~~fD~V~  130 (259)
                      .++.+|||+|||+|..+..+++..+ . +|+++|+++.+++.|++++...++. ++++.++|+.+ ++.  ..++||+|+
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~  141 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF  141 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence            4678999999999999999998843 2 9999999999999999999988886 59999999866 232  234899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +....                  .....+++++.++|+|||++++...
T Consensus       142 ~d~~~------------------~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          142 IDADK------------------PNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             ECSCG------------------GGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             ECCch------------------HHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            75432                  3456789999999999999998654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.54  E-value=3.4e-14  Score=124.38  Aligned_cols=107  Identities=19%  Similarity=0.299  Sum_probs=92.2

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .++.+|||+|||+|..+..+++.++. +++++|+ +.+++.+++++...++. ++++..+|+.+ +++. .||+|++..+
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v  258 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFV  258 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESC
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEccc
Confidence            46789999999999999999998766 8999999 99999999998887765 59999999876 3333 4999999999


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++++             ...+...+++++.++|+|||++++.++.
T Consensus       259 l~~~-------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          259 LLNW-------------PDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             GGGS-------------CHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ccCC-------------CHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            8876             3455678999999999999999998766

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.54  E-value=1.6e-14  Score=118.63  Aligned_cols=112  Identities=18%  Similarity=0.141  Sum_probs=80.3

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCC-HHHHHHH---HHHHhhcCCCCeEEEEcccCCCcCC-CCceeEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLS-AVAVEKM---QERLLLKGYKEVKVLEADMLDLPFS-NDCFDVV  129 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s-~~~~~~a---~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V  129 (259)
                      ..++.+|||+|||+|..+..+++..+. +|+|+|+| +.|++.|   ++++...+++++.+.++|+.+++.. .+.+|.|
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i  101 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSI  101 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEE
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEE
Confidence            457789999999999999999976555 89999999 6677666   8887777888899999999887521 1345555


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .++.+.....          .....+...+++++.++|||||.++++.
T Consensus       102 ~~~~~~~~~~----------~~~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A          102 SILFPWGTLL----------EYVIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             EEESCCHHHH----------HHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEeCCCcHHh----------hhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            4433221100          0000122468999999999999999843

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.54  E-value=1.6e-14  Score=126.77  Aligned_cols=103  Identities=20%  Similarity=0.310  Sum_probs=86.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ++++|||+|||+|.+++.+++.|..+|+++|.|+ +++.|++.++.+++.+ |+++++++.++.++ ++||+|++...-.
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~  160 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGY  160 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBT
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccc
Confidence            6889999999999999999999987999999996 8899999999999865 99999999988765 6899999854332


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                      .++            ....+..++....++|+|||.++
T Consensus       161 ~l~------------~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          161 GLL------------HESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             TBT------------TTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             ccc------------ccchhhhHHHHHHhhCCCCceEC
Confidence            221            22356788888899999999987

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.54  E-value=1.7e-15  Score=135.26  Aligned_cols=103  Identities=22%  Similarity=0.354  Sum_probs=83.5

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeE--EEEcccCCCcCCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVK--VLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~--~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++    +.+...  +...+...+++++++||+|++..+
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~v  180 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTEGPANVIYAANT  180 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHHCCEEEEEEESC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCCCCEEEEEECCh
Confidence            4678999999999999999999988 999999999999999876    222211  222333344555689999999999


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++|+               .++..+++++.++|||||++++..+.
T Consensus       181 l~h~---------------~d~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          181 LCHI---------------PYVQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             GGGC---------------TTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHhc---------------CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            9887               47889999999999999999997653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.53  E-value=5.1e-14  Score=115.91  Aligned_cols=104  Identities=15%  Similarity=0.193  Sum_probs=83.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC---CcCCCCceeEEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD---LPFSNDCFDVVI  130 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~~~~~~fD~V~  130 (259)
                      +.++.+|||+|||+|..+..+++. ++. +|+++|+++.+++.+.+++..+  +++.++++|+.+   ++...++||+|+
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D~V~  152 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVIF  152 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCEEEEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcEEEEE
Confidence            457889999999999999999987 333 9999999999888888777654  479999999987   334467899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +..+                 .......++.++.++|+|||.+++...
T Consensus       153 ~~~~-----------------~~~~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          153 ADVA-----------------QPDQTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             ECCC-----------------CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EcCC-----------------CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence            8543                 113445678899999999999999543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.53  E-value=3e-14  Score=126.55  Aligned_cols=135  Identities=17%  Similarity=0.203  Sum_probs=101.4

Q ss_pred             ccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCC
Q 025039           41 WLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL  119 (259)
Q Consensus        41 w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~  119 (259)
                      ++........++.....++.+|||+|||+|..+..++..|..+|+++|+++.+++.|++++..+++. +++++++|+.+.
T Consensus       200 ~f~~~~~~~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~  279 (396)
T 2as0_A          200 FFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE  279 (396)
T ss_dssp             CCSTTHHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred             ccCCHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHH
Confidence            3444444445555555578899999999999999999987559999999999999999999998887 699999998764


Q ss_pred             cC----CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          120 PF----SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       120 ~~----~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      ..    ..++||+|++.++.......      ...........++..+.++|+|||.+++++++..
T Consensus       280 ~~~~~~~~~~fD~Vi~dpP~~~~~~~------~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  339 (396)
T 2as0_A          280 MEKLQKKGEKFDIVVLDPPAFVQHEK------DLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  339 (396)
T ss_dssp             HHHHHHTTCCEEEEEECCCCSCSSGG------GHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             HHHHHhhCCCCCEEEECCCCCCCCHH------HHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence            21    24689999987654211000      0001225677899999999999999999887653

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.53  E-value=1.1e-14  Score=119.26  Aligned_cols=101  Identities=17%  Similarity=0.328  Sum_probs=83.3

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEcccCCC-c-CCCCceeEEEec
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDL-P-FSNDCFDVVIEK  132 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~-~-~~~~~fD~V~~~  132 (259)
                      +.+|||+|||+|..+..+++..+ . +|+++|+++.+++.|+++++..++.  +++++++|+.+. + +.+++||+|++.
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d  136 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ  136 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence            34999999999999999998632 3 9999999999999999999998886  599999998763 2 335789999975


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ...                  .....+++.+.++|+|||++++..
T Consensus       137 ~~~------------------~~~~~~l~~~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          137 VSP------------------MDLKALVDAAWPLLRRGGALVLAD  163 (221)
T ss_dssp             CCT------------------TTHHHHHHHHHHHEEEEEEEEETT
T ss_pred             CcH------------------HHHHHHHHHHHHHcCCCcEEEEeC
Confidence            432                  344578999999999999999843

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.53  E-value=3e-14  Score=116.42  Aligned_cols=108  Identities=18%  Similarity=0.185  Sum_probs=85.5

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-Cc-CC----CCcee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-LP-FS----NDCFD  127 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~-~~----~~~fD  127 (259)
                      .++.+|||+|||+|..+..+++... . +|+++|+++.+++.|++++...++.+ ++++++|+.+ ++ ..    .++||
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD  136 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  136 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence            3678999999999999999998632 2 99999999999999999999888764 9999999855 22 12    16899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +|++....++               .....+++..+ ++|+|||++++.....
T Consensus       137 ~V~~d~~~~~---------------~~~~~~~~~~~-~~LkpgG~lv~~~~~~  173 (221)
T 3u81_A          137 MVFLDHWKDR---------------YLPDTLLLEKC-GLLRKGTVLLADNVIV  173 (221)
T ss_dssp             EEEECSCGGG---------------HHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred             EEEEcCCccc---------------chHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence            9998765432               24555677777 9999999999865543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.53  E-value=9.9e-14  Score=117.80  Aligned_cols=116  Identities=13%  Similarity=0.173  Sum_probs=86.1

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCce---eEEEec
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCF---DVVIEK  132 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~f---D~V~~~  132 (259)
                      ++.+|||+|||+|..+..++.. +. +|+++|+|+.+++.|++++..+++.+ ++++++|+.+. ++ ++|   |+|+++
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~-~~f~~~D~Ivsn  199 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK-EKFASIEMILSN  199 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG-GGTTTCCEEEEC
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc-cccCCCCEEEEc
Confidence            5679999999999999999988 43 99999999999999999999888875 99999999873 22 478   999998


Q ss_pred             ceeeeeee--CCCCCCCCCc--hhHHHHHHHHHHHH-hcccCCcEEEEE
Q 025039          133 ATMEVLFV--NSGDPWNPQP--ETVTKVMAMLEGVH-RVLKPDGLFISV  176 (259)
Q Consensus       133 ~~l~~~~~--~~~~~~~~~~--~~~~~~~~~l~~~~-~~LkpgG~l~~~  176 (259)
                      +++...-.  .....|+|..  ....+...+++++. +.|+|||.+++.
T Consensus       200 PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e  248 (284)
T 1nv8_A          200 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  248 (284)
T ss_dssp             CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence            76542210  0000021100  00011127899999 999999999985

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.53  E-value=2.9e-14  Score=126.13  Aligned_cols=135  Identities=14%  Similarity=0.112  Sum_probs=101.1

Q ss_pred             cccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEcccCCC
Q 025039           42 LKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDL  119 (259)
Q Consensus        42 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~  119 (259)
                      +...+....++...+.++.+|||+|||+|.+++.++..+..+|+++|+|+.+++.|+++++.+++.  +++++++|+.+.
T Consensus       196 f~~~~~~~~~~~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~  275 (385)
T 2b78_A          196 FLDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY  275 (385)
T ss_dssp             CGGGHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH
T ss_pred             CCcHHHHHHHHHHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH
Confidence            333344445555443678899999999999999999887668999999999999999999999886  799999998763


Q ss_pred             -c-C--CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          120 -P-F--SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       120 -~-~--~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                       + .  ...+||+|++.++......  +    ..........+++..+.++|+|||.+++.+.....
T Consensus       276 l~~~~~~~~~fD~Ii~DPP~~~~~~--~----~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~  336 (385)
T 2b78_A          276 FKYARRHHLTYDIIIIDPPSFARNK--K----EVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM  336 (385)
T ss_dssp             HHHHHHTTCCEEEEEECCCCC-----------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             HHHHHHhCCCccEEEECCCCCCCCh--h----hHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence             2 1  2458999998766521100  0    00134567788999999999999999998766543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.53  E-value=8.8e-15  Score=132.80  Aligned_cols=104  Identities=17%  Similarity=0.293  Sum_probs=87.5

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .++.+|||+|||+|.++..+++.+..+|+++|+|+ +++.|++++..+++ ++++++.+|+.+++++ ++||+|+++.++
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~  234 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMG  234 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCH
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCch
Confidence            36789999999999999999987655999999998 99999999988887 4599999999887654 589999998776


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                      +++             ..+.....+..+.++|+|||.+++
T Consensus       235 ~~~-------------~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          235 YML-------------FNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             HHH-------------TCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             Hhc-------------CcHHHHHHHHHHHHhcCCCCEEEE
Confidence            554             224556677789999999999984

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.53  E-value=2.4e-14  Score=119.32  Aligned_cols=105  Identities=17%  Similarity=0.219  Sum_probs=89.2

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhc-CCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLK-GYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      +.++.+|||+|||+|.++..+++. ++. +++++|+++.+++.+++++... +.+++.+..+|+.+.++++++||+|++.
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~  173 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD  173 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC
Confidence            467889999999999999999988 543 9999999999999999998877 6567999999998876666789999973


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .                    .+...+++++.++|+|||.+++.....
T Consensus       174 ~--------------------~~~~~~l~~~~~~L~~gG~l~~~~~~~  201 (258)
T 2pwy_A          174 L--------------------MEPWKVLEKAALALKPDRFLVAYLPNI  201 (258)
T ss_dssp             S--------------------SCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred             C--------------------cCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            2                    122378999999999999999988764

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.52  E-value=2.7e-14  Score=120.66  Aligned_cols=125  Identities=12%  Similarity=0.151  Sum_probs=90.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc--CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC----CCCceeEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF----SNDCFDVV  129 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~V  129 (259)
                      ..++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.+++++...+++++.++++|+.+++.    ..++||+|
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence            457889999999999999999985  323899999999999999999999888889999999877543    25689999


Q ss_pred             Eecceeeeeee-CCCCCCCCC--chhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          130 IEKATMEVLFV-NSGDPWNPQ--PETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       130 ~~~~~l~~~~~-~~~~~~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++..+....-. .....|.+.  .+......++++.+.++|||||.+++.+++.
T Consensus       161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            98754322100 000001000  0001234689999999999999999988754

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.52  E-value=1.5e-13  Score=121.06  Aligned_cols=134  Identities=15%  Similarity=0.132  Sum_probs=97.7

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      ..++.+|||+|||+|.+++.++..+.. +++|+|+++.+++.|++++...++ +++++.++|+.+++.++++||+|+++.
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np  294 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL  294 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence            567889999999999999999998865 899999999999999999999887 469999999999887778999999998


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEE
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEW  199 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (259)
                      ++........       .......++++.+.++|  +|.+++++.+...+. ..+...++......
T Consensus       295 Pyg~r~~~~~-------~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~~~-~~~~~~G~~~~~~~  350 (373)
T 3tm4_A          295 PYGLKIGKKS-------MIPDLYMKFFNELAKVL--EKRGVFITTEKKAIE-EAIAENGFEIIHHR  350 (373)
T ss_dssp             CCC------C-------CHHHHHHHHHHHHHHHE--EEEEEEEESCHHHHH-HHHHHTTEEEEEEE
T ss_pred             CCCcccCcch-------hHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHH-HHHHHcCCEEEEEE
Confidence            8754321100       11223478889999988  566666655443332 23334444433333

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.52  E-value=2.1e-14  Score=121.26  Aligned_cols=104  Identities=17%  Similarity=0.276  Sum_probs=87.5

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhc-CCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLK-GYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      +.++.+|||+|||+|..+..+++. ++. +++++|+++.+++.+++++... +.+++.+.++|+.+ ++++++||+|++.
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~  186 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIAD  186 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEEC
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEEc
Confidence            457789999999999999999987 333 9999999999999999999887 76679999999987 4556789999972


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .                    .+...+++++.++|+|||++++.+...
T Consensus       187 ~--------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~  214 (275)
T 1yb2_A          187 I--------------------PDPWNHVQKIASMMKPGSVATFYLPNF  214 (275)
T ss_dssp             C--------------------SCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             C--------------------cCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            1                    122478999999999999999987654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.52  E-value=2.3e-14  Score=132.96  Aligned_cols=109  Identities=14%  Similarity=0.164  Sum_probs=87.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC--cCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|.++..|++.|. +|+|+|+++.+++.|+..+...+..++++.++++.++  ...+++||+|+|..
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e  142 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS  142 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence            45678999999999999999999998 8999999999999999998887755799999999876  34567899999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +++|+            .+ ......+..+.+.|+++|..++...
T Consensus       143 ~~ehv------------~~-~~~~~~~~~~~~tl~~~~~~~~~~~  174 (569)
T 4azs_A          143 VFHHI------------VH-LHGIDEVKRLLSRLADVTQAVILEL  174 (569)
T ss_dssp             CHHHH------------HH-HHCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred             chhcC------------CC-HHHHHHHHHHHHHhccccceeeEEe
Confidence            99887            11 2222334456677788877776554

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.52  E-value=6.3e-14  Score=124.05  Aligned_cols=133  Identities=16%  Similarity=0.192  Sum_probs=98.2

Q ss_pred             ccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc
Q 025039           41 WLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP  120 (259)
Q Consensus        41 w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  120 (259)
                      ++...+.....+...++++.+|||+|||+|..++.++..|. .|+++|+|+.+++.++++++.+++. ..+.++|+.+..
T Consensus       197 ~f~dqr~~r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~~~~l  274 (393)
T 4dmg_A          197 YYLDQRENRRLFEAMVRPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTL  274 (393)
T ss_dssp             SCGGGHHHHHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCHHHHH
T ss_pred             cCCCHHHHHHHHHHHhcCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCC-CcEEEccHHHHH
Confidence            33344445566666666789999999999999999999988 5999999999999999999998875 456688887632


Q ss_pred             -CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          121 -FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       121 -~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                       ...+.||+|+++.+....   ...   ..........+++..+.++|+|||.+++++++..
T Consensus       275 ~~~~~~fD~Ii~dpP~f~~---~~~---~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~  330 (393)
T 4dmg_A          275 RGLEGPFHHVLLDPPTLVK---RPE---ELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH  330 (393)
T ss_dssp             HTCCCCEEEEEECCCCCCS---SGG---GHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             HHhcCCCCEEEECCCcCCC---CHH---HHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence             112349999987654110   000   0001234567899999999999999998887654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.51  E-value=3.7e-14  Score=122.90  Aligned_cols=104  Identities=14%  Similarity=0.205  Sum_probs=89.9

Q ss_pred             CcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           60 SSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      .+|||+|||+|..+..+++..+. +++++|+ +.+++.+++++...++ +++++..+|+.+ +++ ++||+|++..++|+
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~  245 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGD  245 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGG
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccC
Confidence            89999999999999999988655 8999999 9999999998776554 359999999987 544 57999999999987


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +             .......+++++.++|+|||++++.+..
T Consensus       246 ~-------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          246 L-------------DEAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             C-------------CHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             C-------------CHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            6             4456679999999999999999998764

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.51  E-value=4.5e-14  Score=110.85  Aligned_cols=120  Identities=14%  Similarity=0.130  Sum_probs=85.2

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .++.+|||+|||+|.++..+++.+  +++|+|+|+.+++.         .+++++.++|+.+ ++++++||+|+++.+++
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~---------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~   89 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES---------HRGGNLVRADLLC-SINQESVDVVVFNPPYV   89 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT---------CSSSCEEECSTTT-TBCGGGCSEEEECCCCB
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc---------ccCCeEEECChhh-hcccCCCCEEEECCCCc
Confidence            467799999999999999999988  89999999999987         1468999999987 55568999999988775


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc--cccccccCCCCCCc
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP--HFRRPFFNAPQFTW  195 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~~~  195 (259)
                      ..-..  ..|...    .+...++.++.+.+ |||.++++.....  .....++...+|..
T Consensus        90 ~~~~~--~~~~~~----~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~  143 (170)
T 3q87_B           90 PDTDD--PIIGGG----YLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGT  143 (170)
T ss_dssp             TTCCC--TTTBCC----GGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEE
T ss_pred             cCCcc--ccccCC----cchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcE
Confidence            42100  001111    12345777777777 9999999875432  22223444455543

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.51  E-value=1.4e-13  Score=122.75  Aligned_cols=106  Identities=14%  Similarity=0.082  Sum_probs=84.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcC-CCeEEEeeCCHHHHHHH-------HHHHhhcC--CCCeEEEEcccCCC--cC--
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKM-------QERLLLKG--YKEVKVLEADMLDL--PF--  121 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a-------~~~~~~~~--~~~v~~~~~d~~~~--~~--  121 (259)
                      +.++.+|||+|||+|.++..+++.. ..+|+|+|+++.+++.|       ++++...+  +.+++++++|....  ++  
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~  319 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE  319 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccc
Confidence            4578899999999999999999864 33899999999999998       88888877  56799988765431  11  


Q ss_pred             CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       122 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ..++||+|+++..+. .               .+...+|.++.++|||||.+++..
T Consensus       320 ~~~~FDvIvvn~~l~-~---------------~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          320 LIPQCDVILVNNFLF-D---------------EDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             HGGGCSEEEECCTTC-C---------------HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccCCCCEEEEeCccc-c---------------ccHHHHHHHHHHhCCCCeEEEEee
Confidence            246899999865441 1               466788999999999999999874

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.51  E-value=1.1e-13  Score=117.22  Aligned_cols=105  Identities=18%  Similarity=0.216  Sum_probs=81.4

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeC-CHHHHHHHHHHH-----hhcCCC-----CeEEEEcccCCCc--C--
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDL-SAVAVEKMQERL-----LLKGYK-----EVKVLEADMLDLP--F--  121 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~-s~~~~~~a~~~~-----~~~~~~-----~v~~~~~d~~~~~--~--  121 (259)
                      .++.+|||+|||+|.+++.+++.+..+|+++|+ ++.+++.+++++     ...++.     ++.+...++.+..  +  
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            467899999999999999999987658999999 899999999998     555543     5777766654421  1  


Q ss_pred             --CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhccc---C--CcEEEEE
Q 025039          122 --SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLK---P--DGLFISV  176 (259)
Q Consensus       122 --~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk---p--gG~l~~~  176 (259)
                        ..++||+|++..++++.               .....+++.+.++|+   |  ||.++++
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~---------------~~~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFH---------------QAHDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCG---------------GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             hccCCCCCEEEEeCcccCh---------------HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence              35789999987776543               567789999999999   9  9988765

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.50  E-value=5.5e-14  Score=114.76  Aligned_cols=104  Identities=15%  Similarity=0.151  Sum_probs=85.4

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCc--CC---CCceeE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP--FS---NDCFDV  128 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--~~---~~~fD~  128 (259)
                      .++.+|||+|||+|..+..+++..+ . +++++|+++.+++.+++++...++.+ ++++++|+.+..  +.   .++||+
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~  136 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF  136 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence            4678999999999999999999843 2 99999999999999999999888865 999999986531  11   157999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |++....                  .....+++.+.++|+|||++++...
T Consensus       137 v~~d~~~------------------~~~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          137 IFIDADK------------------QNNPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             EEECSCG------------------GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred             EEEcCCc------------------HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            9976542                  3446899999999999999988654

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.50  E-value=3.2e-14  Score=116.26  Aligned_cols=105  Identities=11%  Similarity=0.081  Sum_probs=85.7

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-c-CCC----Ccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-P-FSN----DCFD  127 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~-~~~----~~fD  127 (259)
                      .++.+|||+|||+|..+..+++..+ . +|+++|+++.+++.+++++...++.+ ++++++|+.+. + ...    ++||
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            3678999999999999999998733 2 99999999999999999999888865 99999998653 2 111    6899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +|++....                  .....+++.+.++|+|||++++....
T Consensus       143 ~v~~~~~~------------------~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          143 LIYIDADK------------------ANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             EEEECSCG------------------GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             EEEECCCH------------------HHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            99965432                  34567999999999999999986543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.50  E-value=2.5e-13  Score=111.21  Aligned_cols=102  Identities=20%  Similarity=0.225  Sum_probs=81.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CC-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVI  130 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~  130 (259)
                      +.++.+|||+|||+|..+..+++. ++ .+|+++|+++.+++.++++++..  +++.++++|+.+..   ...++||+|+
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~  148 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVIF  148 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCceEEE
Confidence            457889999999999999999987 44 39999999999999999988765  57999999997732   1235899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      +..+.                 ......++.++.++|+|||.+++.
T Consensus       149 ~~~~~-----------------~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          149 EDVAQ-----------------PTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             ECCCS-----------------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCCC-----------------HhHHHHHHHHHHHhcCCCCEEEEE
Confidence            75431                 123345699999999999999987

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.50  E-value=4e-14  Score=116.08  Aligned_cols=108  Identities=19%  Similarity=0.252  Sum_probs=86.2

Q ss_pred             HhhcccCCCCCcEEEEcCCCCcchHHHHhc-CC------CeEEEeeCCHHHHHHHHHHHhhcC-----CCCeEEEEcccC
Q 025039           50 HLVQPHIKPNSSVLELGCGNSRLSEGLYND-GI------TAITCIDLSAVAVEKMQERLLLKG-----YKEVKVLEADML  117 (259)
Q Consensus        50 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~------~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~  117 (259)
                      ..+...+.++.+|||+|||+|..+..+++. +.      .+|+++|+++.+++.+++++...+     .+++.+..+|+.
T Consensus        76 ~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  155 (227)
T 1r18_A           76 EYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGR  155 (227)
T ss_dssp             HHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGG
T ss_pred             HHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcc
Confidence            333334667899999999999999999885 32      389999999999999999987655     457999999987


Q ss_pred             CCcCCC-CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          118 DLPFSN-DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       118 ~~~~~~-~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      + .++. ++||+|++..+++++                     ++++.++|+|||++++....
T Consensus       156 ~-~~~~~~~fD~I~~~~~~~~~---------------------~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          156 K-GYPPNAPYNAIHVGAAAPDT---------------------PTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             G-CCGGGCSEEEEEECSCBSSC---------------------CHHHHHTEEEEEEEEEEESC
T ss_pred             c-CCCcCCCccEEEECCchHHH---------------------HHHHHHHhcCCCEEEEEEec
Confidence            7 3333 689999998877554                     36789999999999987543

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.49  E-value=5.5e-14  Score=115.67  Aligned_cols=104  Identities=18%  Similarity=0.246  Sum_probs=86.7

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCC-cCC--CCceeEEEe
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-PFS--NDCFDVVIE  131 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~~~--~~~fD~V~~  131 (259)
                      .++.+|||+|||+|..+..+++..+. +++++|+++.+++.|++++...++. ++.+..+|+.+. +..  +++||+|++
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  132 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI  132 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence            36789999999999999999998543 9999999999999999999888875 499999998774 322  468999998


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ..+.                  .+...+++.+.++|+|||++++.+.
T Consensus       133 ~~~~------------------~~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          133 DAAK------------------GQYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             EGGG------------------SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             CCCH------------------HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence            6543                  2456899999999999999998643

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.49  E-value=6.8e-14  Score=124.26  Aligned_cols=135  Identities=14%  Similarity=0.131  Sum_probs=100.5

Q ss_pred             cccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-C-CeEEEEcccC
Q 025039           40 EWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-K-EVKVLEADML  117 (259)
Q Consensus        40 ~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~-~v~~~~~d~~  117 (259)
                      .+++.......++... .++.+|||+|||+|..+..+++.|..+|+++|+++.+++.|++++..+++ + +++++++|+.
T Consensus       203 gff~~~~~~~~~l~~~-~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~  281 (396)
T 3c0k_A          203 GYYLDQRDSRLATRRY-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF  281 (396)
T ss_dssp             SSCGGGHHHHHHHHHH-CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHH
T ss_pred             CcCcCHHHHHHHHHHh-hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHH
Confidence            3444444444444443 57889999999999999999998755999999999999999999999988 6 7999999987


Q ss_pred             CCcC----CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          118 DLPF----SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       118 ~~~~----~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      +...    ...+||+|++.++......  . .+   .........++..+.++|+|||++++.+....
T Consensus       282 ~~~~~~~~~~~~fD~Ii~dpP~~~~~~--~-~~---~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  343 (396)
T 3c0k_A          282 KLLRTYRDRGEKFDVIVMDPPKFVENK--S-QL---MGACRGYKDINMLAIQLLNEGGILLTFSCSGL  343 (396)
T ss_dssp             HHHHHHHHTTCCEEEEEECCSSTTTCS--S-SS---SCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             HHHHHHHhcCCCCCEEEECCCCCCCCh--h-HH---HHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            7421    1468999998765421100  0 00   01225677899999999999999999876653

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.49  E-value=6.7e-14  Score=123.73  Aligned_cols=133  Identities=19%  Similarity=0.167  Sum_probs=99.8

Q ss_pred             cccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 025039           40 EWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL  119 (259)
Q Consensus        40 ~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  119 (259)
                      .|+.........+...  ++.+|||+|||+|..+..++..+ .+|+++|+++.+++.|++++..++++++.++++|+.+.
T Consensus       193 g~f~~~~~~~~~~~~~--~~~~VLDlg~G~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~  269 (382)
T 1wxx_A          193 GAYLDQRENRLYMERF--RGERALDVFSYAGGFALHLALGF-REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDL  269 (382)
T ss_dssp             CCCGGGHHHHHHGGGC--CEEEEEEETCTTTHHHHHHHHHE-EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHH
T ss_pred             ccccchHHHHHHHHhc--CCCeEEEeeeccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHH
Confidence            3554444444455544  78899999999999999999883 39999999999999999999999987799999998764


Q ss_pred             cC----CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          120 PF----SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       120 ~~----~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      ..    ...+||+|++.++.....  ..    ...........++..+.++|+|||.+++.+++..
T Consensus       270 ~~~~~~~~~~fD~Ii~dpP~~~~~--~~----~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  329 (382)
T 1wxx_A          270 LRRLEKEGERFDLVVLDPPAFAKG--KK----DVERAYRAYKEVNLRAIKLLKEGGILATASCSHH  329 (382)
T ss_dssp             HHHHHHTTCCEEEEEECCCCSCCS--TT----SHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             HHHHHhcCCCeeEEEECCCCCCCC--hh----HHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            21    246899999876542110  00    0012235667899999999999999999887653

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.49  E-value=2.6e-13  Score=119.58  Aligned_cols=104  Identities=18%  Similarity=0.230  Sum_probs=87.4

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-CcC-CCCceeEEEecce
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPF-SNDCFDVVIEKAT  134 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~-~~~~fD~V~~~~~  134 (259)
                      ++.+|||+| |+|.++..++..++ .+|+++|+++.+++.|++++...++.+++++++|+.+ ++. .+++||+|+++.+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p  250 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP  250 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence            578999999 99999999999887 4999999999999999999998887789999999988 553 3468999999877


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEE-EEEec
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF-ISVSF  178 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l-~~~~~  178 (259)
                      ++.                .....+++++.++|+|||.+ ++...
T Consensus       251 ~~~----------------~~~~~~l~~~~~~LkpgG~~~~~~~~  279 (373)
T 2qm3_A          251 ETL----------------EAIRAFVGRGIATLKGPRCAGYFGIT  279 (373)
T ss_dssp             SSH----------------HHHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred             Cch----------------HHHHHHHHHHHHHcccCCeEEEEEEe
Confidence            642                23588999999999999954 44433

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.49  E-value=1.5e-13  Score=130.03  Aligned_cols=134  Identities=17%  Similarity=0.193  Sum_probs=101.3

Q ss_pred             ccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEcccCC
Q 025039           41 WLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLD  118 (259)
Q Consensus        41 w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~  118 (259)
                      ++...+.....+... .++.+|||+|||+|.+++.++..|..+|+++|+|+.+++.++++++.+++.  +++++++|+.+
T Consensus       523 ~f~d~r~~r~~l~~~-~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~  601 (703)
T 3v97_A          523 LFLDHRIARRMLGQM-SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLA  601 (703)
T ss_dssp             CCGGGHHHHHHHHHH-CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHH
T ss_pred             CcccHHHHHHHHHHh-cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH
Confidence            444444455555543 368899999999999999999888767999999999999999999999886  59999999987


Q ss_pred             C-cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          119 L-PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       119 ~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      . +...++||+|+++++..........    ..+...+..+++..+.++|+|||++++.+..
T Consensus       602 ~l~~~~~~fD~Ii~DPP~f~~~~~~~~----~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          602 WLREANEQFDLIFIDPPTFSNSKRMED----AFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             HHHHCCCCEEEEEECCCSBC-----------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             HHHhcCCCccEEEECCccccCCccchh----HHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            3 3345789999998764211000000    0134578889999999999999999987655

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.48  E-value=5.2e-14  Score=117.30  Aligned_cols=81  Identities=10%  Similarity=0.096  Sum_probs=66.1

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC---cCC---CCceeEE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL---PFS---NDCFDVV  129 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~---~~~---~~~fD~V  129 (259)
                      ++.+|||+|||+|.++..++...+ .+++|+|+++.+++.|++++...++.+ ++++++|+.+.   +++   +++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            567999999999999998887742 299999999999999999998888765 99999997652   333   2589999


Q ss_pred             Eecceeeee
Q 025039          130 IEKATMEVL  138 (259)
Q Consensus       130 ~~~~~l~~~  138 (259)
                      +++.+++..
T Consensus       145 ~~npp~~~~  153 (254)
T 2h00_A          145 MCNPPFFAN  153 (254)
T ss_dssp             EECCCCC--
T ss_pred             EECCCCccC
Confidence            999887543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.48  E-value=7.1e-14  Score=118.02  Aligned_cols=105  Identities=20%  Similarity=0.290  Sum_probs=87.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhc-C--CCCeEEEEcccCCCcCCCCceeEEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLK-G--YKEVKVLEADMLDLPFSNDCFDVVI  130 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~~~~~~~fD~V~  130 (259)
                      +.++.+|||+|||+|.++..+++. ++. +++++|+++.+++.|++++... +  .+++.+.++|+.+.++++++||+|+
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~  176 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAV  176 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEE
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEE
Confidence            567889999999999999999985 433 9999999999999999998876 5  4579999999988776677899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +...                    +...+++++.++|+|||.+++.+...
T Consensus       177 ~~~~--------------------~~~~~l~~~~~~L~pgG~l~~~~~~~  206 (280)
T 1i9g_A          177 LDML--------------------APWEVLDAVSRLLVAGGVLMVYVATV  206 (280)
T ss_dssp             EESS--------------------CGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             ECCc--------------------CHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            7321                    22368999999999999999987653

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.47  E-value=6e-14  Score=113.59  Aligned_cols=101  Identities=22%  Similarity=0.216  Sum_probs=82.9

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-cCCCCceeEEEecc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-PFSNDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~~~~~~fD~V~~~~  133 (259)
                      ++.+|||+|||+|..+..+++..+ . +++++|+++.+++.|++++...++.+ ++++++|+.+. +...+ ||+|++..
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~  134 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC  134 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence            568999999999999999998743 2 99999999999999999988877654 89999998663 33345 99999753


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ..                  .....+++++.++|+|||++++..
T Consensus       135 ~~------------------~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          135 DV------------------FNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             TT------------------SCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             Ch------------------hhhHHHHHHHHHhcCCCeEEEEEC
Confidence            21                  345689999999999999999854

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.47  E-value=4.6e-13  Score=110.12  Aligned_cols=103  Identities=16%  Similarity=0.100  Sum_probs=77.0

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVI  130 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~  130 (259)
                      +.++.+|||+|||+|..+..+++. ++. +|+++|+++.+++.+.+.....  +++.++++|+....   ...++||+|+
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D~I~  151 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYKSVVENVDVLY  151 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhhccccceEEEE
Confidence            568899999999999999999886 434 9999999999976665544433  47999999987632   1236899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ++.+.                 ......++..+.++|||||.|++..
T Consensus       152 ~d~a~-----------------~~~~~il~~~~~~~LkpGG~lvisi  181 (232)
T 3id6_C          152 VDIAQ-----------------PDQTDIAIYNAKFFLKVNGDMLLVI  181 (232)
T ss_dssp             ECCCC-----------------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ecCCC-----------------hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence            86442                 0223344556667999999999874

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.46  E-value=9.4e-14  Score=117.34  Aligned_cols=104  Identities=15%  Similarity=0.234  Sum_probs=87.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEec
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      +.++.+|||+|||+|.++..+++. ++. +++++|+++.+++.|++++...++ +++.+..+|+.+. ++.++||+|+++
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~  188 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFLD  188 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEEC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEEC
Confidence            457889999999999999999988 544 999999999999999999988776 4689999998875 455789999974


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ..                    +...+++.+.++|+|||.+++.....
T Consensus       189 ~~--------------------~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (277)
T 1o54_A          189 VP--------------------DPWNYIDKCWEALKGGGRFATVCPTT  216 (277)
T ss_dssp             CS--------------------CGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred             Cc--------------------CHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            21                    22368999999999999999987653

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.46  E-value=1.5e-13  Score=120.85  Aligned_cols=102  Identities=15%  Similarity=0.208  Sum_probs=86.3

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.+..+|||+|||+|..+..+++..+. +++++|+ +.+++.++++      ++++++.+|+.+ +++.+  |+|++..+
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~p~~--D~v~~~~v  270 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF------SGVEHLGGDMFD-GVPKG--DAIFIKWI  270 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCCCC--SEEEEESC
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCCC-CCCCC--CEEEEech
Confidence            345689999999999999999998776 8999999 8888776542      479999999987 55543  99999999


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +|++             +.++..++|++++++|+|||++++.+...
T Consensus       271 lh~~-------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  303 (368)
T 3reo_A          271 CHDW-------------SDEHCLKLLKNCYAALPDHGKVIVAEYIL  303 (368)
T ss_dssp             GGGB-------------CHHHHHHHHHHHHHHSCTTCEEEEEECCC
T ss_pred             hhcC-------------CHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            9887             55677899999999999999999987653

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.46  E-value=1.7e-14  Score=119.82  Aligned_cols=104  Identities=17%  Similarity=0.145  Sum_probs=85.7

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCC------CCcee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFS------NDCFD  127 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~------~~~fD  127 (259)
                      .++.+|||+|||+|..+..+++..+ . +|+++|+++.+++.|++++...++. +++++++|+.+....      .++||
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD  138 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD  138 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence            3578999999999999999998643 2 9999999999999999999988875 599999998763211      47899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|++....                  .....+++.+.++|+|||++++...
T Consensus       139 ~V~~d~~~------------------~~~~~~l~~~~~~LkpGG~lv~d~~  171 (242)
T 3r3h_A          139 FIFIDADK------------------TNYLNYYELALKLVTPKGLIAIDNI  171 (242)
T ss_dssp             EEEEESCG------------------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             EEEEcCCh------------------HHhHHHHHHHHHhcCCCeEEEEECC
Confidence            99975432                  3456789999999999999998644

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.46  E-value=3.3e-13  Score=122.32  Aligned_cols=122  Identities=16%  Similarity=0.193  Sum_probs=92.3

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC-CCCceeEEEecce
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKAT  134 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~  134 (259)
                      ++.+|||+|||+|..+..+++...  ..|+++|+++.+++.++++++..+++++.++++|+.+++. ..++||+|++..+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            789999999999999999998732  3899999999999999999999998889999999987653 3568999998543


Q ss_pred             ee---eeeeCCCCCCCCCchhH----HHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          135 ME---VLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       135 l~---~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ..   .+..++...|.-.++..    ....++|.++.++|||||++++.+++
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs  248 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT  248 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence            21   11111222222111121    22457899999999999999998875

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.46  E-value=1.5e-13  Score=119.94  Aligned_cols=106  Identities=19%  Similarity=0.207  Sum_probs=84.2

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..+..+++..+. +++++|+ +.++.  +++....+. +++++..+|+.+ +.+  +||+|++..
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~p--~~D~v~~~~  255 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-EVP--HADVHVLKR  255 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-CCC--CCSEEEEES
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-CCC--CCcEEEEeh
Confidence            356789999999999999999998776 8999999 45554  333333333 359999999973 444  899999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++|++             ...+...+|++++++|||||++++.+...
T Consensus       256 vlh~~-------------~d~~~~~~L~~~~~~LkpgG~l~i~e~~~  289 (348)
T 3lst_A          256 ILHNW-------------GDEDSVRILTNCRRVMPAHGRVLVIDAVV  289 (348)
T ss_dssp             CGGGS-------------CHHHHHHHHHHHHHTCCTTCEEEEEECCB
T ss_pred             hccCC-------------CHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence            99877             44566899999999999999999987643

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.46  E-value=5.1e-14  Score=109.90  Aligned_cols=105  Identities=25%  Similarity=0.280  Sum_probs=82.2

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--------CCCCc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDC  125 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~  125 (259)
                      +.++.+|||+|||+|..+..+++. ++. +++++|+++ +++.          +++.+..+|+.+.+        +++++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCc
Confidence            567889999999999999999988 553 999999998 6432          46899999998765        56678


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHH------HHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTK------VMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      ||+|+++.+++...         . .....      ...+++++.++|+|||.+++.++...
T Consensus        89 ~D~i~~~~~~~~~~---------~-~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  140 (180)
T 1ej0_A           89 VQVVMSDMAPNMSG---------T-PAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             EEEEEECCCCCCCS---------C-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             eeEEEECCCccccC---------C-CccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            99999988776441         0 01111      26899999999999999999877554

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.46  E-value=2.2e-13  Score=112.79  Aligned_cols=104  Identities=19%  Similarity=0.173  Sum_probs=86.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...++ +++.+..+|+.+...++++||+|++...
T Consensus        89 ~~~~~~vldiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  167 (248)
T 2yvl_A           89 LNKEKRVLEFGTGSGALLAVLSEVAG-EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVR  167 (248)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECSS
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCC-EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECCc
Confidence            35788999999999999999998844 999999999999999999988776 4689999998875435568999997321


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                                          +...+++.+.++|+|||.+++.....
T Consensus       168 --------------------~~~~~l~~~~~~L~~gG~l~~~~~~~  193 (248)
T 2yvl_A          168 --------------------EPWHYLEKVHKSLMEGAPVGFLLPTA  193 (248)
T ss_dssp             --------------------CGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred             --------------------CHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence                                22467899999999999999987653

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.46  E-value=2.6e-13  Score=122.39  Aligned_cols=125  Identities=20%  Similarity=0.276  Sum_probs=93.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEe
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIE  131 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~  131 (259)
                      ..++.+|||+|||+|..+..+++...  .+++++|+++.+++.+++++...+++++.+.++|+.+++  +++++||+|++
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence            56788999999999999999998632  389999999999999999999988878999999998765  44468999997


Q ss_pred             cceeeee---eeCCCCCCCCCchhHHH----HHHHHHHHHhcccCCcEEEEEecCC
Q 025039          132 KATMEVL---FVNSGDPWNPQPETVTK----VMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       132 ~~~l~~~---~~~~~~~~~~~~~~~~~----~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ..+....   ...+...|...+.....    ...+++.+.++|||||.+++++++.
T Consensus       337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            5432111   11111112111112211    2678999999999999999988764

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.46  E-value=2.6e-13  Score=116.30  Aligned_cols=110  Identities=22%  Similarity=0.297  Sum_probs=83.2

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhh----cCCCCeEEEEcccCCCcC--CCCceeEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLL----KGYKEVKVLEADMLDLPF--SNDCFDVV  129 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~----~~~~~v~~~~~d~~~~~~--~~~~fD~V  129 (259)
                      +++.+|||+|||+|..+..+++.... +++++|+++.+++.+++++..    ...++++++.+|+.+...  .+++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            56789999999999999999987433 999999999999999998732    122469999999877542  36789999


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHH--HHHHHHHHhcccCCcEEEEEecC
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKV--MAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++..+....             ....+  .++++.+.++|+|||++++...+
T Consensus       174 i~d~~~~~~-------------~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  212 (304)
T 3bwc_A          174 IIDTTDPAG-------------PASKLFGEAFYKDVLRILKPDGICCNQGES  212 (304)
T ss_dssp             EEECC----------------------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EECCCCccc-------------cchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            986543211             11122  58999999999999999987543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.45  E-value=3.8e-13  Score=116.76  Aligned_cols=105  Identities=18%  Similarity=0.167  Sum_probs=81.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcC-----------CCCeEEEEcccCCC--c
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKG-----------YKEVKVLEADMLDL--P  120 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~-----------~~~v~~~~~d~~~~--~  120 (259)
                      +.++.+|||+|||+|.++..+++. |+. +|+++|+++.+++.|++++...+           ..++++..+|+.+.  +
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~  182 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  182 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence            567899999999999999999987 663 99999999999999999987532           24699999999875  3


Q ss_pred             CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +++++||+|++....                    ...++.++.++|+|||.+++.....
T Consensus       183 ~~~~~fD~V~~~~~~--------------------~~~~l~~~~~~LkpgG~lv~~~~~~  222 (336)
T 2b25_A          183 IKSLTFDAVALDMLN--------------------PHVTLPVFYPHLKHGGVCAVYVVNI  222 (336)
T ss_dssp             -----EEEEEECSSS--------------------TTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             cCCCCeeEEEECCCC--------------------HHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            456689999974321                    1137899999999999999877654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.45  E-value=2.3e-13  Score=109.22  Aligned_cols=97  Identities=20%  Similarity=0.252  Sum_probs=75.5

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .++.+|||+|||+|..+..+++.+..+++++|+++.+++.+++++.     +++++++|+.+++   ++||+|+++++++
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~---~~~D~v~~~~p~~  121 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS---GKYDTWIMNPPFG  121 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC---CCEEEEEECCCC-
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC---CCeeEEEECCCch
Confidence            4678999999999999999998865479999999999999999864     6899999998864   6899999999987


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      +.             .......+++++.+++  |+++++.
T Consensus       122 ~~-------------~~~~~~~~l~~~~~~~--g~~~~~~  146 (200)
T 1ne2_A          122 SV-------------VKHSDRAFIDKAFETS--MWIYSIG  146 (200)
T ss_dssp             -------------------CHHHHHHHHHHE--EEEEEEE
T ss_pred             hc-------------cCchhHHHHHHHHHhc--CcEEEEE
Confidence            76             1122357888888888  4544433

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.45  E-value=1.5e-13  Score=123.75  Aligned_cols=123  Identities=18%  Similarity=0.169  Sum_probs=92.4

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-CCCCceeEEEec
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEK  132 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~  132 (259)
                      ..++.+|||+|||+|..+..+++...  .+|+++|+++.+++.+++++...++. +.++++|+.+++ ...++||+|++.
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D  177 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD  177 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence            45789999999999999999998733  28999999999999999999999987 999999987754 235789999975


Q ss_pred             ceee---eeeeCCCCCCCCCchhH----HHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          133 ATME---VLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       133 ~~l~---~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .+..   .+..++...|.-.+...    ....++|+.+.++|||||+|++.+++
T Consensus       178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs  231 (464)
T 3m6w_A          178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT  231 (464)
T ss_dssp             CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence            4421   11111222222222222    23378999999999999999998775

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.45  E-value=4.8e-13  Score=116.98  Aligned_cols=107  Identities=18%  Similarity=0.195  Sum_probs=91.7

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .+..+|||+|||+|..+..++++.+. +++..|. +.+++.+++++...+.++++++.+|+++.+.+  .+|+|++..++
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vl  254 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVL  254 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSG
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeec
Confidence            35679999999999999999999887 8889997 88999999988766666799999999875543  57999999999


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |.+             +.++..++|++++++|+|||++++++.-
T Consensus       255 h~~-------------~d~~~~~iL~~~~~al~pgg~lli~e~~  285 (353)
T 4a6d_A          255 HDW-------------ADGKCSHLLERIYHTCKPGGGILVIESL  285 (353)
T ss_dssp             GGS-------------CHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             ccC-------------CHHHHHHHHHHHHhhCCCCCEEEEEEee
Confidence            887             5577889999999999999999998764

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.44  E-value=5.4e-13  Score=107.48  Aligned_cols=101  Identities=21%  Similarity=0.228  Sum_probs=82.0

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .++.+|||+|||+|..+..+++.+..+++|+|+++.+++.+++++...++ ++.++++|+.+++   ++||+|+++.+++
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~---~~~D~v~~~~p~~  123 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN---SRVDIVIMNPPFG  123 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC---CCCCEEEEcCCCc
Confidence            46789999999999999999998765899999999999999999988876 7999999998864   4899999998876


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ...             ......+++.+.+++  ||.+++.
T Consensus       124 ~~~-------------~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          124 SQR-------------KHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             SSS-------------TTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             ccc-------------CCchHHHHHHHHHhc--CcEEEEE
Confidence            541             122356788888888  5544433

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.44  E-value=2.1e-13  Score=119.74  Aligned_cols=102  Identities=14%  Similarity=0.157  Sum_probs=86.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      ..+..+|||+|||+|..+..+++..+. +++++|+ +.+++.+++.      ++++++.+|+.+ +++.+  |+|++..+
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~--D~v~~~~v  268 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF------PGVTHVGGDMFK-EVPSG--DTILMKWI  268 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCCCC--SEEEEESC
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc------CCeEEEeCCcCC-CCCCC--CEEEehHH
Confidence            446789999999999999999998776 8999999 8888776542      479999999987 66643  99999999


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +|++             +.++...+|++++++|+|||++++.+...
T Consensus       269 lh~~-------------~d~~~~~~L~~~~~~L~pgG~l~i~e~~~  301 (364)
T 3p9c_A          269 LHDW-------------SDQHCATLLKNCYDALPAHGKVVLVQCIL  301 (364)
T ss_dssp             GGGS-------------CHHHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred             hccC-------------CHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            9877             55678899999999999999999987643

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.44  E-value=3.5e-13  Score=118.16  Aligned_cols=109  Identities=18%  Similarity=0.302  Sum_probs=83.3

Q ss_pred             hHHHHhhcccCCCCCcEEEEcCC------CCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccC
Q 025039           46 SHFRHLVQPHIKPNSSVLELGCG------NSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADML  117 (259)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLDiGcG------~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~  117 (259)
                      ..+..++.....++.+|||||||      +|..+..+++. .+. +|+|+|+|+.|.      .   ..++++++++|+.
T Consensus       204 ~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~---~~~rI~fv~GDa~  274 (419)
T 3sso_A          204 PHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V---DELRIRTIQGDQN  274 (419)
T ss_dssp             HHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G---CBTTEEEEECCTT
T ss_pred             HHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h---cCCCcEEEEeccc
Confidence            34555565555678899999999      66666666654 333 999999999872      1   2257999999999


Q ss_pred             CCcCC------CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          118 DLPFS------NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       118 ~~~~~------~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++++.      +++||+|++.+. ++.               .+...+|+++.++|||||++++.+..
T Consensus       275 dlpf~~~l~~~d~sFDlVisdgs-H~~---------------~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          275 DAEFLDRIARRYGPFDIVIDDGS-HIN---------------AHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             CHHHHHHHHHHHCCEEEEEECSC-CCH---------------HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             ccchhhhhhcccCCccEEEECCc-ccc---------------hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            87665      579999998753 322               57789999999999999999997653

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.44  E-value=3.1e-13  Score=117.43  Aligned_cols=104  Identities=14%  Similarity=0.220  Sum_probs=87.4

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEec
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      ..+.++.+|||+|||+|.+++. ++ +..+|+++|+|+.+++.+++++..+++. +++++++|+.+..   ++||+|+++
T Consensus       191 ~~~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~d  265 (336)
T 2yx1_A          191 KKVSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMN  265 (336)
T ss_dssp             HHCCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEEC
T ss_pred             HhcCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEEC
Confidence            3456789999999999999999 77 4449999999999999999999999884 6999999998765   689999986


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      .+..                   ...++..+.++|+|||.+++.+++..
T Consensus       266 pP~~-------------------~~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          266 LPKF-------------------AHKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             CTTT-------------------GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             CcHh-------------------HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence            4321                   12788999999999999999877654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.44  E-value=4.2e-13  Score=107.57  Aligned_cols=110  Identities=12%  Similarity=0.217  Sum_probs=78.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC--C-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc------------
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI--T-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------------  120 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------  120 (259)
                      +.++.+|||+|||+|..+..+++..+  . +|+|+|+++.+           ..+++.++++|+.+.+            
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhcccccccc
Confidence            56788999999999999999998754  3 89999999831           2246899999998765            


Q ss_pred             -------------CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          121 -------------FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       121 -------------~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                                   +++++||+|+++.++++....    .............+++++.++|+|||.+++..+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~----~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  157 (201)
T 2plw_A           89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNK----IDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG  157 (201)
T ss_dssp             ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCH----HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCc----ccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence                         455789999998766542000    00000001112358999999999999999876654

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.43  E-value=1.7e-13  Score=120.70  Aligned_cols=101  Identities=23%  Similarity=0.298  Sum_probs=85.0

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|..+..+++.++. +++++|+ +.+++.+++      .++++++.+|+.+ +++.  ||+|++..+
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~--~D~v~~~~~  276 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA-SVPQ--GDAMILKAV  276 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCCC--EEEEEEESS
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc-CCCC--CCEEEEecc
Confidence            356789999999999999999999876 8999999 988887764      2469999999987 5553  999999999


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +|++             .......+|++++++|+|||++++.++.
T Consensus       277 lh~~-------------~d~~~~~~l~~~~~~L~pgG~l~i~e~~  308 (372)
T 1fp1_D          277 CHNW-------------SDEKCIEFLSNCHKALSPNGKVIIVEFI  308 (372)
T ss_dssp             GGGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccC-------------CHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            9877             3455669999999999999999998653

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.43  E-value=1.6e-13  Score=114.13  Aligned_cols=103  Identities=12%  Similarity=0.097  Sum_probs=84.6

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCC-c-C-----CCCce
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-F-----SNDCF  126 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-~-----~~~~f  126 (259)
                      .++.+|||+|||+|..+..+++..+ . +++++|+++.+++.|++++...++. +++++.+|+.+. + +     ..++|
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            3568999999999999999998743 2 9999999999999999999888874 599999998653 2 1     14789


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      |+|++....                  .....+++.+.++|+|||++++..
T Consensus       158 D~V~~d~~~------------------~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          158 DFIFVDADK------------------DNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             SEEEECSCS------------------TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             EEEEEcCch------------------HHHHHHHHHHHHhCCCCeEEEEec
Confidence            999975431                  345688999999999999999854

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.43  E-value=1.9e-13  Score=112.99  Aligned_cols=104  Identities=17%  Similarity=0.207  Sum_probs=85.1

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-c------------
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-P------------  120 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~------------  120 (259)
                      .++.+|||+|||+|..+..+++..+  .+++++|+++.+++.|++++...++.+ +.+..+|+.+. +            
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  138 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA  138 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence            4678999999999999999998843  299999999999999999998888765 99999987652 2            


Q ss_pred             --CC-C-CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          121 --FS-N-DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       121 --~~-~-~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                        ++ . ++||+|++....                  .....+++.+.++|+|||++++...
T Consensus       139 ~~f~~~~~~fD~I~~~~~~------------------~~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          139 SDFAFGPSSIDLFFLDADK------------------ENYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             TTTCCSTTCEEEEEECSCG------------------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             ccccCCCCCcCEEEEeCCH------------------HHHHHHHHHHHHHcCCCeEEEEEcc
Confidence              11 2 689999976432                  3446889999999999999998653

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.42  E-value=5.1e-13  Score=110.03  Aligned_cols=104  Identities=16%  Similarity=0.105  Sum_probs=84.6

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC----cCCC--Ccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL----PFSN--DCFD  127 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~----~~~~--~~fD  127 (259)
                      .++.+|||+|||+|..+..+++..+ . +++++|+++.+++.|++++...++.+ +++..+|+.+.    +..+  ++||
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            3578999999999999999998743 2 99999999999999999998888754 99999987542    2222  6899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|++....                  .....+++.+.++|+|||++++...
T Consensus       151 ~V~~d~~~------------------~~~~~~l~~~~~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          151 LIFIDADK------------------RNYPRYYEIGLNLLRRGGLMVIDNV  183 (232)
T ss_dssp             EEEECSCG------------------GGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred             EEEECCCH------------------HHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            99975431                  3456789999999999999998654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.41  E-value=1.9e-13  Score=109.41  Aligned_cols=111  Identities=19%  Similarity=0.246  Sum_probs=79.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC--------C---CC
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF--------S---ND  124 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~---~~  124 (259)
                      ++++.+|||+|||+|..+..+++.+. +|+|+|+++..           ..++++++++|+.+...        .   .+
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~~-~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLAR-KIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEGIE   90 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTCS-EEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcCC-cEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence            56789999999999999999999854 99999999741           23578999999987541        1   14


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      +||+|++++.....    +...............+++.+.++|||||.|++..+..+.
T Consensus        91 ~~D~Vlsd~~~~~~----g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~  144 (191)
T 3dou_A           91 KVDDVVSDAMAKVS----GIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM  144 (191)
T ss_dssp             SEEEEEECCCCCCC----SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred             cceEEecCCCcCCC----CCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence            89999997643221    0000000012233467889999999999999998776543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.41  E-value=3.5e-13  Score=117.72  Aligned_cols=101  Identities=14%  Similarity=0.197  Sum_probs=84.7

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|..+..+++..+. +++++|+ +.+++.+++.      +++++..+|+.+ +++  .||+|++..+
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~p--~~D~v~~~~~  255 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------NNLTYVGGDMFT-SIP--NADAVLLKYI  255 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------TTEEEEECCTTT-CCC--CCSEEEEESC
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------CCcEEEeccccC-CCC--CccEEEeehh
Confidence            346789999999999999999988665 8999999 9998877642      469999999976 544  3999999999


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccC---CcEEEEEecC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP---DGLFISVSFG  179 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~  179 (259)
                      +|++             .......++++++++|+|   ||++++.++.
T Consensus       256 lh~~-------------~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  290 (352)
T 1fp2_A          256 LHNW-------------TDKDCLRILKKCKEAVTNDGKRGKVTIIDMV  290 (352)
T ss_dssp             GGGS-------------CHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             hccC-------------CHHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence            9877             344566999999999999   9999998754

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.41  E-value=3e-13  Score=110.72  Aligned_cols=104  Identities=15%  Similarity=0.146  Sum_probs=84.5

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCC-c-CCC----Ccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-FSN----DCFD  127 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-~~~----~~fD  127 (259)
                      .++.+|||+|||+|..+..+++..+ . +++++|+++.+++.+++++...++. +++++++|+.+. + +..    ++||
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  147 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  147 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence            4678999999999999999998743 2 9999999999999999999888774 599999988653 1 111    6899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|++....                  .....+++.+.++|+|||++++...
T Consensus       148 ~v~~d~~~------------------~~~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          148 VAVVDADK------------------ENCSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             EEEECSCS------------------TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEECCCH------------------HHHHHHHHHHHHHcCCCeEEEEECC
Confidence            99985431                  3456789999999999999998643

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.41  E-value=3.9e-13  Score=120.84  Aligned_cols=125  Identities=16%  Similarity=0.112  Sum_probs=91.2

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcC-C-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-CCCCceeEEEec
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDG-I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEK  132 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~  132 (259)
                      ..++.+|||+|||+|..+..+++.. . .+|+++|+++.+++.++++++..++.++.+.++|..++. ...++||+|++.
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence            4678999999999999999998862 2 389999999999999999999999988999999987754 234789999976


Q ss_pred             ceeeee---eeCCCCCCCCCchhH----HHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 ATMEVL---FVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~~~---~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .+-...   ..++...|...+...    ....++|..+.++|||||.|++++++.
T Consensus       183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            542111   000000000001111    233488999999999999999988753

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.41  E-value=4.8e-13  Score=115.99  Aligned_cols=109  Identities=18%  Similarity=0.311  Sum_probs=83.1

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhc--CC--CCeEEEEcccCCC-c-CCCCceeEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLK--GY--KEVKVLEADMLDL-P-FSNDCFDVV  129 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~-~-~~~~~fD~V  129 (259)
                      +++.+|||+|||+|..+..+++..+. +|+++|+++.+++.|++++...  ++  ++++++.+|+.+. + .+.++||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            46789999999999999999987543 9999999999999999987642  22  4699999998763 2 335689999


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ++...-         ++.+  ...-...++++.+.++|+|||++++.
T Consensus       199 i~d~~~---------p~~~--~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          199 IVDSSD---------PIGP--AKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EECCCC---------TTSG--GGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCCC---------ccCc--chhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            985431         1100  01011368999999999999999986

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.41  E-value=3.9e-13  Score=111.10  Aligned_cols=103  Identities=17%  Similarity=0.119  Sum_probs=84.7

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-c-C-----CCCce
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-P-F-----SNDCF  126 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~-~-----~~~~f  126 (259)
                      .++.+|||+|||+|..+..+++..+ . +++++|+++.+++.|++++...++.+ ++++.+|+.+. + +     +.++|
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            3578999999999999999998743 2 99999999999999999998888754 99999998763 2 2     14689


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      |+|++...                  ......+++.+.++|+|||++++..
T Consensus       149 D~I~~d~~------------------~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          149 DFGFVDAD------------------KPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             EEEEECSC------------------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CEEEECCc------------------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence            99997532                  1355789999999999999999864

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.40  E-value=5.6e-13  Score=111.67  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=83.4

Q ss_pred             CcEEEEcCCC--CcchHHHHh-cCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--C--C--CCcee--
Q 025039           60 SSVLELGCGN--SRLSEGLYN-DGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--F--S--NDCFD--  127 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~-~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~--~--~~~fD--  127 (259)
                      .+|||+|||+  +..+..+++ ..+. +|+++|.|+.|++.|++++...+..+++++++|+.+..  +  +  .+.||  
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~  159 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLT  159 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTT
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcC
Confidence            6899999997  444555544 3444 99999999999999999987544335899999998742  0  1  24455  


Q ss_pred             ---EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          128 ---VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       128 ---~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                         .|+++.+||++            ...++...++.++.+.|+|||+|++......
T Consensus       160 ~p~av~~~avLH~l------------~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          160 RPVALTVIAIVHFV------------LDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             SCCEEEEESCGGGS------------CGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             CcchHHhhhhHhcC------------CchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence               58889999988            2223367899999999999999999876643

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.40  E-value=3.9e-13  Score=109.01  Aligned_cols=97  Identities=26%  Similarity=0.502  Sum_probs=77.7

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCcee
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFD  127 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  127 (259)
                      +...+.. ..++.+|||+|||+|..+..++   . +++++|+++.               ++.+.++|+.++++++++||
T Consensus        58 ~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~---~-~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD  117 (215)
T 2zfu_A           58 IARDLRQ-RPASLVVADFGCGDCRLASSIR---N-PVHCFDLASL---------------DPRVTVCDMAQVPLEDESVD  117 (215)
T ss_dssp             HHHHHHT-SCTTSCEEEETCTTCHHHHHCC---S-CEEEEESSCS---------------STTEEESCTTSCSCCTTCEE
T ss_pred             HHHHHhc-cCCCCeEEEECCcCCHHHHHhh---c-cEEEEeCCCC---------------CceEEEeccccCCCCCCCEe
Confidence            3444432 3567899999999999988772   3 8999999986               35678899988887778999


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +|++..++++                .+...+++++.++|+|||.+++.++..
T Consensus       118 ~v~~~~~l~~----------------~~~~~~l~~~~~~L~~gG~l~i~~~~~  154 (215)
T 2zfu_A          118 VAVFCLSLMG----------------TNIRDFLEEANRVLKPGGLLKVAEVSS  154 (215)
T ss_dssp             EEEEESCCCS----------------SCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             EEEEehhccc----------------cCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            9999888752                255789999999999999999987654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.40  E-value=5.8e-13  Score=114.65  Aligned_cols=113  Identities=18%  Similarity=0.189  Sum_probs=84.1

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhc--C---CCCeEEEEcccCCC-cCCCCceeEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLK--G---YKEVKVLEADMLDL-PFSNDCFDVV  129 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~--~---~~~v~~~~~d~~~~-~~~~~~fD~V  129 (259)
                      +++.+|||+|||+|..+..+++.... +++++|+++.+++.|++++...  +   -++++++.+|+.+. +...++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            45689999999999999999987433 9999999999999999987541  1   25699999998763 3345789999


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ++....+..        ...+...-...++++.+.++|+|||++++..
T Consensus       156 i~d~~~~~~--------~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          156 IIDLTDPVG--------EDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             EEECCCCBS--------TTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EECCCCccc--------ccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            986543210        0000000013689999999999999999864

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.40  E-value=5.3e-13  Score=113.12  Aligned_cols=106  Identities=15%  Similarity=0.267  Sum_probs=81.3

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc--C---------CCCeEEEEcccCCC-cCCCC
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK--G---------YKEVKVLEADMLDL-PFSND  124 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~---------~~~v~~~~~d~~~~-~~~~~  124 (259)
                      .++.+|||+|||+|..+..+++.+..+++++|+++.+++.|++++ ..  +         -++++++.+|+.+. .. .+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~  151 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR  151 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence            457899999999999999999884349999999999999999987 33  2         24689999998653 22 56


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHH--HHHHHHHHHhcccCCcEEEEEe
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +||+|++..... .        .    ....  ..++++.+.++|+|||++++..
T Consensus       152 ~fD~Ii~d~~~~-~--------~----~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          152 GFDVIIADSTDP-V--------G----PAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             CEEEEEEECCCC-C-----------------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CeeEEEECCCCC-C--------C----cchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            899999864321 1        0    1112  2678999999999999999864

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.40  E-value=6.9e-13  Score=118.96  Aligned_cols=124  Identities=12%  Similarity=0.187  Sum_probs=92.5

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEec
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEK  132 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~  132 (259)
                      ..++.+|||+|||+|..+..+++.+.. +++++|+++.+++.+++++...++ ++.+.++|+.+++  ++.++||+|++.
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~~~~~~fD~Vl~D  322 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQWCGEQQFDRILLD  322 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhhcccCCCCEEEEe
Confidence            457889999999999999999998754 999999999999999999998886 5788999998765  455789999975


Q ss_pred             ceeeee---eeCCCCCCCCCchhH----HHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 ATMEVL---FVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~~~---~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .+....   ...+...|...+...    ....++++.+.++|||||++++.+++.
T Consensus       323 ~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          323 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             CCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            432211   111111111111111    123688999999999999999988754

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.40  E-value=6.7e-13  Score=112.61  Aligned_cols=109  Identities=18%  Similarity=0.245  Sum_probs=84.2

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcC----CCCeEEEEcccCCC-cCCCCceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL-PFSNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~-~~~~~~fD~V~  130 (259)
                      +++.+|||+|||+|..+..+++..+. +++++|+++.+++.+++++...+    .++++++.+|+.+. +...++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            46789999999999999999987543 99999999999999999876532    25689999998763 22257899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHH--HHHHHHHHhcccCCcEEEEEec
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKV--MAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +.....         +.    .....  .++++.+.++|+|||++++...
T Consensus       157 ~d~~~~---------~~----~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          157 VDSSDP---------IG----PAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             EECCCT---------TT----GGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCCC---------CC----cchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            854321         10    11122  6899999999999999998754

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.39  E-value=7.5e-13  Score=113.40  Aligned_cols=110  Identities=15%  Similarity=0.219  Sum_probs=82.2

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhh--cC--CCCeEEEEcccCC-CcCCCCceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLL--KG--YKEVKVLEADMLD-LPFSNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~--~~--~~~v~~~~~d~~~-~~~~~~~fD~V~  130 (259)
                      ..+.+|||+|||+|..+..+++.... +++++|+++.+++.|++++..  .+  .++++++.+|+.+ ++...++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            46689999999999999999988543 999999999999999998764  12  2469999999866 333457899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +.......         +  .......++++.+.++|+|||++++..
T Consensus       174 ~d~~~~~~---------~--~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          174 TDSSDPMG---------P--AESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EECC----------------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCCCC---------c--chhhhHHHHHHHHHhccCCCeEEEEec
Confidence            85432110         0  000123578999999999999999865

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.38  E-value=1.3e-12  Score=111.58  Aligned_cols=111  Identities=15%  Similarity=0.157  Sum_probs=82.3

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhh----cCCCCeEEEEcccCC-CcCCCCceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLL----KGYKEVKVLEADMLD-LPFSNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~----~~~~~v~~~~~d~~~-~~~~~~~fD~V~  130 (259)
                      +.+.+|||+|||+|..+..+++... .+++++|+++.+++.+++++..    ...++++++.+|+.+ ++...++||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            4568999999999999999998743 4999999999999999998753    122569999999866 333356899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHH--HHHHHHHHHHhcccCCcEEEEEecC
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVT--KVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +...-...            ....  ...++++.+.++|+|||++++...+
T Consensus       169 ~d~~~~~~------------~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          169 IDSTDPTA------------GQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             EEC----------------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCccc------------CchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            75321101            0001  1268899999999999999997543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.38  E-value=8.5e-13  Score=108.99  Aligned_cols=149  Identities=16%  Similarity=0.211  Sum_probs=107.2

Q ss_pred             chHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC
Q 025039           45 YSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN  123 (259)
Q Consensus        45 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  123 (259)
                      ...+...+...+.++.+|||+|||.|-++..+....+. +++++|+++.+++.+++++..++. ..++...|...-+ +.
T Consensus       119 lD~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~-~~~~~v~D~~~~~-p~  196 (281)
T 3lcv_B          119 LDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV-PHRTNVADLLEDR-LD  196 (281)
T ss_dssp             HHHHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC-CEEEEECCTTTSC-CC
T ss_pred             HHHHHHHHHhccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeeecccC-CC
Confidence            33444444455667889999999999999999888665 999999999999999999998886 4788888887644 45


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec---CC--ccccc---cccCC--CCC
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF---GQ--PHFRR---PFFNA--PQF  193 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~--~~~~~---~~~~~--~~~  193 (259)
                      +.+|++++.-+++++             ..+.....+ ++.+.|+|+|+++-..-   +.  +.+..   ..+..  ..-
T Consensus       197 ~~~DvaL~lkti~~L-------------e~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~  262 (281)
T 3lcv_B          197 EPADVTLLLKTLPCL-------------ETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARER  262 (281)
T ss_dssp             SCCSEEEETTCHHHH-------------HHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHh-------------hhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhc
Confidence            789999998888776             233334555 89999999999996543   11  11100   11111  113


Q ss_pred             CcEEEEEEeCCeEEEE
Q 025039          194 TWSVEWITFGDGFHYF  209 (259)
Q Consensus       194 ~~~~~~~~~~~~~~~~  209 (259)
                      +|......+++...|.
T Consensus       263 g~~~~~~~~~nEl~y~  278 (281)
T 3lcv_B          263 SCRIQRLEIGNELIYV  278 (281)
T ss_dssp             TCCEEEEEETTEEEEE
T ss_pred             CCceeeeeecCeeEEE
Confidence            5777778888876654

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.38  E-value=7e-13  Score=114.04  Aligned_cols=108  Identities=17%  Similarity=0.294  Sum_probs=80.7

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhc--C--CCCeEEEEcccCCC-cCCCCceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLK--G--YKEVKVLEADMLDL-PFSNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~--~--~~~v~~~~~d~~~~-~~~~~~fD~V~  130 (259)
                      +.+.+|||+|||+|..+..+++..+. +++++|+++.+++.|++++...  +  -++++++.+|+.+. +...++||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            45689999999999999999987543 9999999999999999988653  2  24689999998762 33457899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHH--HHHHHHHHhcccCCcEEEEEe
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKV--MAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +... +..        .    .....  .++++.+.++|+|||++++..
T Consensus       187 ~d~~-~~~--------~----~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          187 TDSS-DPV--------G----PAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             ECCC--------------------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCC-CCC--------C----cchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            8643 111        0    11111  689999999999999999864

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.38  E-value=6e-13  Score=114.02  Aligned_cols=109  Identities=20%  Similarity=0.264  Sum_probs=83.2

Q ss_pred             CcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEecceee
Q 025039           60 SSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATME  136 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l~  136 (259)
                      .+|||||||+|.++..+++..+. +++++|+++.+++.|++++.....++++++.+|+.+..  .++++||+|++....+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~  170 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG  170 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence            49999999999999999985444 89999999999999999986554457999999987642  3457899999753221


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ..         + +.. -...++++.++++|+|||++++...+
T Consensus       171 ~~---------~-~~~-L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          171 AI---------T-PQN-FTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             SC---------C-CGG-GSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cc---------c-chh-hhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            10         0 000 01258999999999999999987654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.37  E-value=1.4e-12  Score=110.76  Aligned_cols=78  Identities=21%  Similarity=0.400  Sum_probs=67.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++...+. ++++++++|+.+.+++  +||+|+++.+
T Consensus        26 ~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nlp  102 (285)
T 1zq9_A           26 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLP  102 (285)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECC
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEecC
Confidence            35678999999999999999999987 999999999999999999876655 4699999999887654  7999999877


Q ss_pred             ee
Q 025039          135 ME  136 (259)
Q Consensus       135 l~  136 (259)
                      ++
T Consensus       103 y~  104 (285)
T 1zq9_A          103 YQ  104 (285)
T ss_dssp             GG
T ss_pred             cc
Confidence            64

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.36  E-value=1.3e-12  Score=112.73  Aligned_cols=110  Identities=20%  Similarity=0.304  Sum_probs=83.7

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhc--C--CCCeEEEEcccCCC-cCCCCceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLK--G--YKEVKVLEADMLDL-PFSNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~--~--~~~v~~~~~d~~~~-~~~~~~fD~V~  130 (259)
                      +++.+|||+|||+|..+..+++..+ .+++++|+++.+++.|++++...  +  .++++++++|+.+. +...++||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            4568999999999999999998743 39999999999999999987652  2  24699999998663 22356899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHH--HHHHHHHHhcccCCcEEEEEecC
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKV--MAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++.. +        ++.    .....  .++++.+.++|+|||++++...+
T Consensus       195 ~d~~-~--------p~~----~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          195 VDSS-D--------PIG----PAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             EECC-C--------SSS----GGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ECCc-C--------CCC----cchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            8542 1        111    11111  68999999999999999986543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.36  E-value=4.2e-13  Score=113.71  Aligned_cols=96  Identities=9%  Similarity=0.214  Sum_probs=73.0

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEE-EcccCCCc---CCCCceeEEEecc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVL-EADMLDLP---FSNDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~---~~~~~fD~V~~~~  133 (259)
                      ++.+|||+|||||.++..+++.|..+|+|+|+++.|++.+.++-     +++... ..|+..+.   ++..+||+|++..
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~-----~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~  159 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD-----DRVRSMEQYNFRYAEPVDFTEGLPSFASIDV  159 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC-----TTEEEECSCCGGGCCGGGCTTCCCSEEEECC
T ss_pred             cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cccceecccCceecchhhCCCCCCCEEEEEe
Confidence            56799999999999999999997669999999999999855431     233322 23443332   2334599999877


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      +++.+                  ..+|.++.++|+|||.++++
T Consensus       160 sf~sl------------------~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          160 SFISL------------------NLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             SSSCG------------------GGTHHHHHHHSCTTCEEEEE
T ss_pred             eHhhH------------------HHHHHHHHHHcCcCCEEEEE
Confidence            66433                  57899999999999999987

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.35  E-value=1.7e-11  Score=100.33  Aligned_cols=134  Identities=16%  Similarity=0.177  Sum_probs=96.3

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .++.+|||+|||+|.++..+.  +..+++++|+++.+++.+++++..++ .+..+...|....+.+ +++|+|++.-+++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~~~~~~-~~~DvvLllk~lh  179 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVLCAPPA-EAGDLALIFKLLP  179 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTTTSCCC-CBCSEEEEESCHH
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeecccCCCC-CCcchHHHHHHHH
Confidence            568899999999999999887  33399999999999999999988777 4688889998876644 5899999987777


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec---CCc--cc---cccccCC--CCCCcEEEEEEeCCeE
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF---GQP--HF---RRPFFNA--PQFTWSVEWITFGDGF  206 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~--~~---~~~~~~~--~~~~~~~~~~~~~~~~  206 (259)
                      ++             ..+.....+ ++.+.|+++|+++-..-   +.+  .+   -...+..  ..-.|......+++..
T Consensus       180 ~L-------------E~q~~~~~~-~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~~~nEl  245 (253)
T 3frh_A          180 LL-------------EREQAGSAM-ALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTIGTEL  245 (253)
T ss_dssp             HH-------------HHHSTTHHH-HHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEEEETTEE
T ss_pred             Hh-------------hhhchhhHH-HHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhheecCceE
Confidence            66             222233444 88889999999887641   111  11   0111111  3345777778888875


Q ss_pred             EE
Q 025039          207 HY  208 (259)
Q Consensus       207 ~~  208 (259)
                      .|
T Consensus       246 ~~  247 (253)
T 3frh_A          246 IY  247 (253)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.35  E-value=6.9e-13  Score=109.60  Aligned_cols=97  Identities=14%  Similarity=0.171  Sum_probs=76.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhc----CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC---cC-CCCceeE
Q 025039           58 PNSSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL---PF-SNDCFDV  128 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~~-~~~~fD~  128 (259)
                      ++.+|||+|||+|..+..+++.    ++. +|+++|+++.+++.|+. .   . ++++++++|+.+.   +. ...+||+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~---~-~~v~~~~gD~~~~~~l~~~~~~~fD~  155 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D---M-ENITLHQGDCSDLTTFEHLREMAHPL  155 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-G---C-TTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-c---C-CceEEEECcchhHHHHHhhccCCCCE
Confidence            4679999999999999999986    443 99999999999988872 1   1 4699999999874   43 2347999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHh-cccCCcEEEEEe
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHR-VLKPDGLFISVS  177 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~  177 (259)
                      |++... +                 .+...++.++.+ +|+|||++++.+
T Consensus       156 I~~d~~-~-----------------~~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          156 IFIDNA-H-----------------ANTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             EEEESS-C-----------------SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             EEECCc-h-----------------HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence            997543 1                 134578999997 999999999864

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.35  E-value=2.5e-12  Score=102.52  Aligned_cols=112  Identities=16%  Similarity=0.261  Sum_probs=78.4

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhc-CC---------CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEE-EcccCCCc---
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYND-GI---------TAITCIDLSAVAVEKMQERLLLKGYKEVKVL-EADMLDLP---  120 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~---------~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~---  120 (259)
                      .+.++.+|||+|||+|..+..+++. +.         .+|+++|+++.+           ..+++.++ .+|+....   
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHH
Confidence            3567899999999999999999987 42         489999999831           22467888 88876532   


Q ss_pred             -----CCCCceeEEEecceeeeeeeCCCCCCCC-CchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          121 -----FSNDCFDVVIEKATMEVLFVNSGDPWNP-QPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       121 -----~~~~~fD~V~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                           +++++||+|++..+++....     |.. ..........+++++.++|+|||.+++..+....
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~  150 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNATGF-----RDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ  150 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCCCSC-----HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGG
T ss_pred             HHHHhcCCCCCcEEEeCCCCCCCCC-----cccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence                 23468999999765543210     000 0000111258899999999999999998776543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.35  E-value=1.2e-12  Score=110.50  Aligned_cols=112  Identities=20%  Similarity=0.257  Sum_probs=83.5

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhc--C--CCCeEEEEcccCC-CcCCCCceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLK--G--YKEVKVLEADMLD-LPFSNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~--~~~v~~~~~d~~~-~~~~~~~fD~V~  130 (259)
                      +.+.+|||+|||+|..+..+++. +..+++++|+++.+++.|++++...  +  -++++++.+|+.+ ++...++||+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            35789999999999999999987 3349999999999999999987431  2  2469999999876 233357899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +....... .  ...+        ...++++.+.++|+|||++++...+
T Consensus       154 ~d~~~~~~-~--~~~l--------~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          154 VDSTEPVG-P--AVNL--------FTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             ESCSSCCS-C--CCCC--------STTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ECCCCCCC-c--chhh--------hHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            86432110 0  0000        1247899999999999999987543

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.34  E-value=2.1e-12  Score=112.47  Aligned_cols=119  Identities=19%  Similarity=0.198  Sum_probs=88.0

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC------CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEe
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI------TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIE  131 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~------~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  131 (259)
                      ++.+|||+|||+|.++..+++...      .+++|+|+++.+++.|+.++...+. ++.+.++|..... ....||+|++
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~-~~~~fD~Ii~  207 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL-LVDPVDVVIS  207 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC-CCCCEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc-ccCCccEEEE
Confidence            567999999999999998887642      3899999999999999999888776 6889999987633 3568999999


Q ss_pred             cceeeeeeeCC-CCCCCCC-chhHH-HHHHHHHHHHhcccCCcEEEEEec
Q 025039          132 KATMEVLFVNS-GDPWNPQ-PETVT-KVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       132 ~~~l~~~~~~~-~~~~~~~-~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +++++++-.+. ...|.+. +.+.. ....++..+.+.|+|||+++++.+
T Consensus       208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p  257 (344)
T 2f8l_A          208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  257 (344)
T ss_dssp             ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            99986641100 0001110 00011 123689999999999999999874

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.34  E-value=2.1e-12  Score=113.08  Aligned_cols=100  Identities=15%  Similarity=0.227  Sum_probs=83.8

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .++.+|||+|||+|..+..+++..+. +++++|+ +.+++.+++      .+++++..+|+.+ +++  .||+|++..++
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~--~~D~v~~~~vl  261 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-SIP--SADAVLLKWVL  261 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-CCC--CCSEEEEESCG
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-CCC--CceEEEEcccc
Confidence            35689999999999999999998776 8999999 788876653      2469999999987 554  49999999999


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccC---CcEEEEEecC
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP---DGLFISVSFG  179 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~  179 (259)
                      |++             .......+|+++.++|+|   ||++++.++.
T Consensus       262 h~~-------------~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  295 (358)
T 1zg3_A          262 HDW-------------NDEQSLKILKNSKEAISHKGKDGKVIIIDIS  295 (358)
T ss_dssp             GGS-------------CHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred             cCC-------------CHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence            877             345566999999999999   9999998754

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.32  E-value=1.1e-11  Score=105.83  Aligned_cols=78  Identities=29%  Similarity=0.539  Sum_probs=64.4

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.+++++...+.++++++++|+.++++  .+||+|+++.++
T Consensus        40 ~~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~--~~~D~Vv~n~py  116 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF--PKFDVCTANIPY  116 (299)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC--CCCSEEEEECCG
T ss_pred             CCCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc--ccCCEEEEcCCc
Confidence            35678999999999999999999876 999999999999999999877777779999999988764  379999998766


Q ss_pred             e
Q 025039          136 E  136 (259)
Q Consensus       136 ~  136 (259)
                      +
T Consensus       117 ~  117 (299)
T 2h1r_A          117 K  117 (299)
T ss_dssp             G
T ss_pred             c
Confidence            4

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.31  E-value=3.6e-11  Score=103.08  Aligned_cols=124  Identities=15%  Similarity=0.076  Sum_probs=87.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CC-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC---CceeEEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN---DCFDVVI  130 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~V~  130 (259)
                      ..++.+|||+|||+|..+..+++. +. .+|+++|+++.+++.++++++..++.++.++++|+.++....   .+||.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            567899999999999999999886 32 389999999999999999999999888999999988764321   4799999


Q ss_pred             eccee---eeeeeCCCCCCCC--CchhH----HHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          131 EKATM---EVLFVNSGDPWNP--QPETV----TKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       131 ~~~~l---~~~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +..+.   ..+...+...|..  .++..    ....++|..+.++++ ||++++.+++.
T Consensus       180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence            75432   1121112222211  11121    223567888888887 99999887763

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.30  E-value=1.8e-11  Score=109.78  Aligned_cols=100  Identities=20%  Similarity=0.363  Sum_probs=80.0

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC----CcCCCCceeEEEec
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----LPFSNDCFDVVIEK  132 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~V~~~  132 (259)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++..++++++.+.++|+.+    +++.+++||+|+++
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  363 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCCCEEEECCCCCCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence            4678999999999999999999855 999999999999999999998888889999999987    23445689999987


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      .+..-.               .   ++++.+.+ ++|++++++.
T Consensus       364 PPr~g~---------------~---~~~~~l~~-~~p~~ivyvs  388 (433)
T 1uwv_A          364 PARAGA---------------A---GVMQQIIK-LEPIRIVYVS  388 (433)
T ss_dssp             CCTTCC---------------H---HHHHHHHH-HCCSEEEEEE
T ss_pred             CCCccH---------------H---HHHHHHHh-cCCCeEEEEE
Confidence            654221               1   34444443 6888877764

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.29  E-value=1.3e-11  Score=110.31  Aligned_cols=100  Identities=15%  Similarity=0.197  Sum_probs=80.3

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++..++++ +++.++|+.++.. . +||+|+++.+.
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~-~-~fD~Vv~dPPr  363 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV-K-GFDTVIVDPPR  363 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC-T-TCSEEEECCCT
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc-c-CCCEEEEcCCc
Confidence            56788999999999999999999866 9999999999999999999988886 9999999988642 2 89999986553


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ...                 ...+++.+. .|+|+|++++..
T Consensus       364 ~g~-----------------~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          364 AGL-----------------HPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             TCS-----------------CHHHHHHHH-HHCCSEEEEEES
T ss_pred             cch-----------------HHHHHHHHH-hcCCCcEEEEEC
Confidence            211                 123444444 489999988863

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.28  E-value=1.4e-12  Score=109.48  Aligned_cols=108  Identities=17%  Similarity=0.139  Sum_probs=76.1

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh---hcCCCCeEEE--EcccCCCcCCCCceeEE
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL---LKGYKEVKVL--EADMLDLPFSNDCFDVV  129 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~v~~~--~~d~~~~~~~~~~fD~V  129 (259)
                      .+.++.+|||+|||+|..+..+++. . +|+|+|+++ ++..++++..   ..+ .++.++  ++|+.+++  +++||+|
T Consensus        71 ~~~~g~~VLDlGcGtG~~s~~la~~-~-~V~gvD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~--~~~fD~V  144 (265)
T 2oxt_A           71 YVELTGRVVDLGCGRGGWSYYAASR-P-HVMDVRAYT-LGVGGHEVPRITESYG-WNIVKFKSRVDIHTLP--VERTDVI  144 (265)
T ss_dssp             SCCCCEEEEEESCTTSHHHHHHHTS-T-TEEEEEEEC-CCCSSCCCCCCCCBTT-GGGEEEECSCCTTTSC--CCCCSEE
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHc-C-cEEEEECch-hhhhhhhhhhhhhccC-CCeEEEecccCHhHCC--CCCCcEE
Confidence            4567889999999999999999988 4 899999998 4332221100   011 157888  88998865  5789999


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHH--HHHHHHHHhcccCCc--EEEEEecC
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKV--MAMLEGVHRVLKPDG--LFISVSFG  179 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG--~l~~~~~~  179 (259)
                      +|..+ ++.    +.      ...+..  ..+|..+.++|+|||  .+++..+.
T Consensus       145 ~sd~~-~~~----~~------~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          145 MCDVG-ESS----PK------WSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             EECCC-CCC----SC------HHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             EEeCc-ccC----Cc------cchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            99765 322    00      011111  238899999999999  99987776

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.27  E-value=1.7e-12  Score=109.59  Aligned_cols=109  Identities=15%  Similarity=0.167  Sum_probs=76.3

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh-hcCC-CCeEEE--EcccCCCcCCCCceeEEE
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL-LKGY-KEVKVL--EADMLDLPFSNDCFDVVI  130 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~-~~v~~~--~~d~~~~~~~~~~fD~V~  130 (259)
                      .+.++.+|||+|||+|..+..+++. . +|+|+|+++ ++..++++.. .... .++.++  ++|+.+++  +++||+|+
T Consensus        79 ~~~~g~~VLDlGcGtG~~s~~la~~-~-~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vv  153 (276)
T 2wa2_A           79 GVELKGTVVDLGCGRGSWSYYAASQ-P-NVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVL  153 (276)
T ss_dssp             SCCCCEEEEEESCTTCHHHHHHHTS-T-TEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEE
T ss_pred             CCCCCCEEEEeccCCCHHHHHHHHc-C-CEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEE
Confidence            3457889999999999999999988 4 899999998 5433322110 0011 167888  88988765  57899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHH--HHHHHHHHhcccCCc--EEEEEecC
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKV--MAMLEGVHRVLKPDG--LFISVSFG  179 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG--~l~~~~~~  179 (259)
                      |..+ +..    +.      ......  ..+|..+.++|+|||  .+++..+.
T Consensus       154 sd~~-~~~----~~------~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          154 CDIG-ESN----PT------AAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             ECCC-CCC----SC------HHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             ECCC-cCC----Cc------hhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            9765 322    00      011111  237899999999999  99987776

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.27  E-value=4.1e-12  Score=106.56  Aligned_cols=97  Identities=20%  Similarity=0.212  Sum_probs=78.5

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc----CCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      +.+.+|||+|||+|..+..+++.+ .+++++|+++.+++.|++++...    .-+++++..+|..+..   ++||+|++.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d  146 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL  146 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence            356899999999999999998886 69999999999999999876431    2246899999987754   689999975


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ..                    +...+++.+.++|+|||++++..
T Consensus       147 ~~--------------------dp~~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          147 QE--------------------PDIHRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             SC--------------------CCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CC--------------------ChHHHHHHHHHhcCCCcEEEEEc
Confidence            21                    11238999999999999999864

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.26  E-value=6.1e-11  Score=104.74  Aligned_cols=113  Identities=13%  Similarity=0.171  Sum_probs=89.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC---------------------------------------CeEEEeeCCHHHHHH
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI---------------------------------------TAITCIDLSAVAVEK   96 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------------~~v~~vD~s~~~~~~   96 (259)
                      ..++.+|||++||+|.+++.++..+.                                       .+|+|+|+++.+++.
T Consensus       193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~  272 (385)
T 3ldu_A          193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI  272 (385)
T ss_dssp             CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence            34678999999999999999877642                                       269999999999999


Q ss_pred             HHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccC--CcEE
Q 025039           97 MQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP--DGLF  173 (259)
Q Consensus        97 a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp--gG~l  173 (259)
                      |++++...++. .+++.++|+.+++.+ .+||+|++++++..-.           ........+...+.+.|++  ||.+
T Consensus       273 Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl-----------~~~~~l~~ly~~lg~~lk~~~g~~~  340 (385)
T 3ldu_A          273 ARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERL-----------EDKDSVKQLYKELGYAFRKLKNWSY  340 (385)
T ss_dssp             HHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSH-----------HHHHHHHHHHHHHHHHHHTSBSCEE
T ss_pred             HHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCcc-----------CCHHHHHHHHHHHHHHHhhCCCCEE
Confidence            99999999886 499999999987654 5899999998874321           2334566777777777766  8888


Q ss_pred             EEEecCC
Q 025039          174 ISVSFGQ  180 (259)
Q Consensus       174 ~~~~~~~  180 (259)
                      ++++...
T Consensus       341 ~iit~~~  347 (385)
T 3ldu_A          341 YLITSYE  347 (385)
T ss_dssp             EEEESCT
T ss_pred             EEEECCH
Confidence            8887654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.26  E-value=3.1e-11  Score=106.85  Aligned_cols=113  Identities=15%  Similarity=0.168  Sum_probs=88.5

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC---------------------------------------CeEEEeeCCHHHHHH
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI---------------------------------------TAITCIDLSAVAVEK   96 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------------~~v~~vD~s~~~~~~   96 (259)
                      ..++..|||++||+|.+++.++..+.                                       .+|+|+|+++.+++.
T Consensus       199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~  278 (393)
T 3k0b_A          199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI  278 (393)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence            35678999999999999998887543                                       159999999999999


Q ss_pred             HHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccC--CcEE
Q 025039           97 MQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP--DGLF  173 (259)
Q Consensus        97 a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp--gG~l  173 (259)
                      |++++...++.+ +++.++|+.+++.+ .+||+|++++++..-.           ........+...+.+.|++  ||.+
T Consensus       279 Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl-----------~~~~~l~~ly~~lg~~lk~~~g~~~  346 (393)
T 3k0b_A          279 AKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERL-----------EDEEAVRQLYREMGIVYKRMPTWSV  346 (393)
T ss_dssp             HHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSH-----------HHHHHHHHHHHHHHHHHHTCTTCEE
T ss_pred             HHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCcccc-----------CCchhHHHHHHHHHHHHhcCCCCEE
Confidence            999999999865 99999999987754 5899999998874321           1234555666666666655  9999


Q ss_pred             EEEecCC
Q 025039          174 ISVSFGQ  180 (259)
Q Consensus       174 ~~~~~~~  180 (259)
                      ++++...
T Consensus       347 ~iit~~~  353 (393)
T 3k0b_A          347 YVLTSYE  353 (393)
T ss_dssp             EEEECCT
T ss_pred             EEEECCH
Confidence            9887654

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.26  E-value=4.6e-12  Score=108.52  Aligned_cols=111  Identities=15%  Similarity=0.194  Sum_probs=75.9

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeC----CHHHHHHHHHHHhhcCCCCeEEEEc-ccCCCcCCCCceeEE
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDL----SAVAVEKMQERLLLKGYKEVKVLEA-DMLDLPFSNDCFDVV  129 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~----s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~~fD~V  129 (259)
                      .++++.+|||+|||+|..+..+++. . +|+++|+    ++.+++.+  .....+.+++.++++ |+..++  .++||+|
T Consensus        79 ~~~~g~~VLDlGcG~G~~s~~la~~-~-~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V  152 (305)
T 2p41_A           79 LVTPEGKVVDLGCGRGGWSYYCGGL-K-NVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFIP--PERCDTL  152 (305)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTS-T-TEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTSC--CCCCSEE
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHhc-C-CEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccCC--cCCCCEE
Confidence            4567889999999999999999988 3 7999999    55433211  111112246888888 887764  4689999


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +|..+++ .    +. |.   ........+|..+.++|||||.|++..+..
T Consensus       153 ~sd~~~~-~----g~-~~---~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          153 LCDIGES-S----PN-PT---VEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             EECCCCC-C----SS-HH---HHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             EECCccc-c----Cc-ch---hhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            9976653 1    00 00   001111257899999999999999876654

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.26  E-value=4.6e-11  Score=105.34  Aligned_cols=113  Identities=14%  Similarity=0.171  Sum_probs=89.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC---------------------------------------eEEEeeCCHHHHHH
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT---------------------------------------AITCIDLSAVAVEK   96 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---------------------------------------~v~~vD~s~~~~~~   96 (259)
                      ..++..|||++||+|.+++.++..+.+                                       +++|+|+++.+++.
T Consensus       192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~  271 (384)
T 3ldg_A          192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI  271 (384)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence            356789999999999999988875431                                       59999999999999


Q ss_pred             HHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccC--CcEE
Q 025039           97 MQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP--DGLF  173 (259)
Q Consensus        97 a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp--gG~l  173 (259)
                      |++++...++.+ +++.++|+.+++.+ .+||+|++++++..-.           ........+...+.+.||+  ||.+
T Consensus       272 Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl-----------~~~~~l~~ly~~lg~~lk~~~g~~~  339 (384)
T 3ldg_A          272 ARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERL-----------LDDKAVDILYNEMGETFAPLKTWSQ  339 (384)
T ss_dssp             HHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTT-----------SCHHHHHHHHHHHHHHHTTCTTSEE
T ss_pred             HHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhcc-----------CCHHHHHHHHHHHHHHHhhCCCcEE
Confidence            999999999875 99999999987754 4899999998874221           1234566666666666665  9999


Q ss_pred             EEEecCC
Q 025039          174 ISVSFGQ  180 (259)
Q Consensus       174 ~~~~~~~  180 (259)
                      ++++...
T Consensus       340 ~iit~~~  346 (384)
T 3ldg_A          340 FILTNDT  346 (384)
T ss_dssp             EEEESCT
T ss_pred             EEEECCH
Confidence            9887654

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.25  E-value=2.7e-12  Score=100.87  Aligned_cols=91  Identities=16%  Similarity=0.154  Sum_probs=75.4

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC---CCCceeEEE
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF---SNDCFDVVI  130 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~V~  130 (259)
                      ..+.++.+|||+|||.               +++|+|+.|++.|+++...    ++++.++|+.++++   ++++||+|+
T Consensus         8 ~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~V~   68 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKESSFDIIL   68 (176)
T ss_dssp             TTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCSSCEEEEE
T ss_pred             cCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCCCCEeEEE
Confidence            3477899999999986               1399999999999998642    48899999988776   678999999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +..+++++.              .+...++++++++|||||++++..
T Consensus        69 ~~~~l~~~~--------------~~~~~~l~~~~r~LkpgG~l~~~~  101 (176)
T 2ld4_A           69 SGLVPGSTT--------------LHSAEILAEIARILRPGGCLFLKE  101 (176)
T ss_dssp             ECCSTTCCC--------------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECChhhhcc--------------cCHHHHHHHHHHHCCCCEEEEEEc
Confidence            988887651              133689999999999999999954

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.23  E-value=6.4e-12  Score=103.50  Aligned_cols=96  Identities=11%  Similarity=0.195  Sum_probs=65.2

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEE-EcccCCCc---CCCCceeEEEecc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVL-EADMLDLP---FSNDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~---~~~~~fD~V~~~~  133 (259)
                      ++.+|||+|||+|.++..+++.|..+|+|+|+|+.|++.++++..     .+... ..++....   ++...+|.+.+..
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~  111 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE-----RVVVMEQFNFRNAVLADFEQGRPSFTSIDV  111 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT-----TEEEECSCCGGGCCGGGCCSCCCSEEEECC
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc-----cccccccceEEEeCHhHcCcCCCCEEEEEE
Confidence            467999999999999999999976699999999999999877532     22211 11111111   1111234444332


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ++..+                  ..++.++.++|||||.+++.
T Consensus       112 v~~~l------------------~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          112 SFISL------------------DLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             SSSCG------------------GGTHHHHHHHSCTTCEEEEE
T ss_pred             EhhhH------------------HHHHHHHHHhccCCCEEEEE
Confidence            22111                  46899999999999999986

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.21  E-value=4.4e-11  Score=105.12  Aligned_cols=103  Identities=12%  Similarity=0.183  Sum_probs=80.9

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCC------------
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSN------------  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~------------  123 (259)
                      .+.+|||+|||+|.+++.+++.+. +|+++|+++.+++.|+++++.+++++++++++|+.+..  +..            
T Consensus       213 ~~~~vLDl~cG~G~~~l~la~~~~-~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~  291 (369)
T 3bt7_A          213 SKGDLLELYCGNGNFSLALARNFD-RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL  291 (369)
T ss_dssp             CCSEEEEESCTTSHHHHHHGGGSS-EEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence            357899999999999999988654 99999999999999999999999888999999986632  111            


Q ss_pred             --CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          124 --DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       124 --~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                        ..||+|++.++...                     +..++.+.|+++|.++++++++..
T Consensus       292 ~~~~fD~Vv~dPPr~g---------------------~~~~~~~~l~~~g~ivyvsc~p~t  331 (369)
T 3bt7_A          292 KSYQCETIFVDPPRSG---------------------LDSETEKMVQAYPRILYISCNPET  331 (369)
T ss_dssp             GGCCEEEEEECCCTTC---------------------CCHHHHHHHTTSSEEEEEESCHHH
T ss_pred             ccCCCCEEEECcCccc---------------------cHHHHHHHHhCCCEEEEEECCHHH
Confidence              37999997654321                     234455666789999998877543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.21  E-value=6.8e-11  Score=100.59  Aligned_cols=78  Identities=18%  Similarity=0.302  Sum_probs=68.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++.  +.++++++++|+.+++++...||+|+++.++
T Consensus        48 ~~~~~~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy  124 (295)
T 3gru_A           48 LTKDDVVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVDLNKLDFNKVVANLPY  124 (295)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSCGGGSCCSEEEEECCG
T ss_pred             CCCcCEEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCCcccCCccEEEEeCcc
Confidence            45778999999999999999999866 99999999999999999987  3357999999999988777789999988776


Q ss_pred             e
Q 025039          136 E  136 (259)
Q Consensus       136 ~  136 (259)
                      +
T Consensus       125 ~  125 (295)
T 3gru_A          125 Q  125 (295)
T ss_dssp             G
T ss_pred             c
Confidence            4

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.17  E-value=4.5e-11  Score=105.24  Aligned_cols=100  Identities=18%  Similarity=0.126  Sum_probs=81.4

Q ss_pred             CCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhc---------------CCCCeEEEEcccCCCc-
Q 025039           58 PNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLK---------------GYKEVKVLEADMLDLP-  120 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---------------~~~~v~~~~~d~~~~~-  120 (259)
                      ++.+|||+|||+|..++.++.. +..+|+++|+++.+++.++++++.+               ++.+++++++|+.++. 
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            6789999999999999999987 3338999999999999999999988               7766899999987642 


Q ss_pred             CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ...+.||+|+..+..                   ....+++.+.+.|+|||.+++.
T Consensus       127 ~~~~~fD~I~lDP~~-------------------~~~~~l~~a~~~lk~gG~l~vt  163 (378)
T 2dul_A          127 ERHRYFHFIDLDPFG-------------------SPMEFLDTALRSAKRRGILGVT  163 (378)
T ss_dssp             HSTTCEEEEEECCSS-------------------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred             hccCCCCEEEeCCCC-------------------CHHHHHHHHHHhcCCCCEEEEE
Confidence            113579999965421                   1147889999999999987775

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.17  E-value=3e-12  Score=106.28  Aligned_cols=104  Identities=19%  Similarity=0.283  Sum_probs=79.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC-CceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN-DCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fD~V~~~~~  134 (259)
                      +.++.+|||+|||+|.++..+++.+. +++|+|+++.+++.+++++.  ..++++++++|+.+++++. ++| .|+++.+
T Consensus        27 ~~~~~~VLDiG~G~G~~~~~l~~~~~-~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~P  102 (245)
T 1yub_A           27 LKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNKQRY-KIVGNIP  102 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCSSEE-EEEEECC
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcccCCCc-EEEEeCC
Confidence            35678999999999999999999985 99999999999999988765  2346899999999877653 678 7777766


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHH----------H----HHHHhcccCCcEEEEEe
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAM----------L----EGVHRVLKPDGLFISVS  177 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~----------l----~~~~~~LkpgG~l~~~~  177 (259)
                      ++..              ......+          +    +.+.++|+|||.+.+..
T Consensus       103 y~~~--------------~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A          103 YHLS--------------TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             SSSC--------------HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             cccc--------------HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            5421              1122222          2    66889999999987653

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.16  E-value=2.9e-11  Score=108.85  Aligned_cols=118  Identities=19%  Similarity=0.203  Sum_probs=88.1

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcC--------------CCeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEcccCCCc
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDG--------------ITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDLP  120 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~--------------~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~  120 (259)
                      .++.+|||+|||+|.++..+++..              ..+++|+|+++.+++.|+.++..+++.  ++.+.++|....+
T Consensus       170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~  249 (445)
T 2okc_A          170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE  249 (445)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred             CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence            356799999999999998887641              127999999999999999998888875  5788999987765


Q ss_pred             CCCCceeEEEecceeeeeeeCCCC-----CCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          121 FSNDCFDVVIEKATMEVLFVNSGD-----PWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       121 ~~~~~fD~V~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .. .+||+|++++++.........     .+.+   .......+++.+.++|+|||++.++.+
T Consensus       250 ~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~---~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          250 PS-TLVDVILANPPFGTRPAGSVDINRPDFYVE---TKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             CS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSC---CSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cc-CCcCEEEECCCCCCcccccchhhHhhcCCC---CcchHHHHHHHHHHHhccCCEEEEEEC
Confidence            33 489999999988653211000     0001   111235789999999999999998874

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.15  E-value=5.5e-11  Score=105.98  Aligned_cols=110  Identities=19%  Similarity=0.256  Sum_probs=79.2

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcC--CCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDG--ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      ++.+|||+|||+|.++..+++..  ..+++|+|+++.+++.|         .++.+.++|+.+.. ..++||+|++++++
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy  108 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWE-PGEAFDLILGNPPY  108 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCC-CSSCEEEEEECCCC
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcC-ccCCCCEEEECcCc
Confidence            46799999999999999998752  23999999999988766         36889999998765 34689999999887


Q ss_pred             eeeeeCCCCCCCC-CchhHH---------------HHHHHHHHHHhcccCCcEEEEEecC
Q 025039          136 EVLFVNSGDPWNP-QPETVT---------------KVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       136 ~~~~~~~~~~~~~-~~~~~~---------------~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .......  .+.. ......               ....+++.+.++|+|||.++++.+.
T Consensus       109 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~  166 (421)
T 2ih2_A          109 GIVGEAS--KYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  166 (421)
T ss_dssp             CCBSCTT--TCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             cCccccc--ccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence            5431100  0000 000111               1236799999999999999998754

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.15  E-value=6.2e-11  Score=104.54  Aligned_cols=101  Identities=16%  Similarity=0.108  Sum_probs=82.1

Q ss_pred             CCCcEEEEcCCCCcchHHHHhc--CCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCCCc--CCCCceeEEEe
Q 025039           58 PNSSVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLP--FSNDCFDVVIE  131 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~--~~~~~fD~V~~  131 (259)
                      ++.+|||++||+|..++.++..  |..+|+++|+++.+++.++++++.+++.+  ++++++|+.++.  ...+.||+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            5789999999999999999985  33489999999999999999999999876  899999986632  12357999997


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .+ +.                  ....+++.+.++|+|||++++..
T Consensus       132 DP-~g------------------~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          132 DP-FG------------------TPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             CC-SS------------------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC-Cc------------------CHHHHHHHHHHHhCCCCEEEEEe
Confidence            65 21                  11358889999999999887754

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.14  E-value=1e-10  Score=103.54  Aligned_cols=155  Identities=11%  Similarity=0.029  Sum_probs=97.0

Q ss_pred             cccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc--CCCCeEEEEcccCCC-cC-CCCceeE
Q 025039           53 QPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK--GYKEVKVLEADMLDL-PF-SNDCFDV  128 (259)
Q Consensus        53 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~v~~~~~d~~~~-~~-~~~~fD~  128 (259)
                      ...+.++.+|||+|||+|..+..+++.+. +|+++|+|+.+++.|++++...  ++.+++++++|+.+. +. ++++||+
T Consensus        88 a~~l~~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDv  166 (410)
T 3ll7_A           88 SRFIREGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDY  166 (410)
T ss_dssp             GGGSCTTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSE
T ss_pred             HHhcCCCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceE
Confidence            34455589999999999999999998876 9999999999999999999887  776799999999874 31 2358999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCCCCcEEEEEEeCCeEEE
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHY  208 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (259)
                      |+++++...-  ..+.-|.     .++...-+..+.+.|...+..+++-.++..-....+..........|...+++...
T Consensus       167 V~lDPPrr~~--~~grv~~-----led~~P~l~~~~~~l~~~~~~~~vK~sP~ld~~~~~~~l~~~~ev~~vSv~ge~kE  239 (410)
T 3ll7_A          167 IYVDPARRSG--ADKRVYA-----IADCEPDLIPLATELLPFCSSILAKLSPMIDLWDTLQSLLHVQELHVVAAHGEVKE  239 (410)
T ss_dssp             EEECCEEC-------CCCC-----GGGEESCHHHHHHHHGGGSSEEEEEECTTSCHHHHHHHCSSEEEEEEEEETTEEEE
T ss_pred             EEECCCCcCC--CCceEEe-----hhhcCCCHHHHHHHHHhhCCcEEEEcCCCCChHHHHhhCCCCcEEEEEEeCCeEEE
Confidence            9998776421  0011111     11111123334443333223333333332211111111124567788888888766


Q ss_pred             EEEEEEe
Q 025039          209 FFYILRK  215 (259)
Q Consensus       209 ~~~~~~~  215 (259)
                      ...++..
T Consensus       240 ~~l~~~~  246 (410)
T 3ll7_A          240 LLVRMSL  246 (410)
T ss_dssp             EEEEECT
T ss_pred             EEEEecC
Confidence            5555543

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.11  E-value=2e-10  Score=100.13  Aligned_cols=126  Identities=17%  Similarity=0.163  Sum_probs=91.4

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCC------CCeEEEEcccCCCc-CCCCce
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY------KEVKVLEADMLDLP-FSNDCF  126 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~-~~~~~f  126 (259)
                      ...++.+|||+|||+|.-+.++++.+.. .++++|+++..++.+++++...+.      .++.+...|...++ ...+.|
T Consensus       145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f  224 (359)
T 4fzv_A          145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY  224 (359)
T ss_dssp             CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred             CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence            4568999999999999999999998765 899999999999999999887654      35778888877654 345689


Q ss_pred             eEEEeccee-e----eeeeCCCCCCCCCchhH----HHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          127 DVVIEKATM-E----VLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       127 D~V~~~~~l-~----~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      |.|++..+= .    ..-.++...|...+...    ....++|..+.++|||||+|+.++++.
T Consensus       225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence            999954321 1    11111222232222222    223578999999999999999998874

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.11  E-value=9.4e-10  Score=91.68  Aligned_cols=76  Identities=17%  Similarity=0.324  Sum_probs=64.4

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC----CCceeEEEe
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS----NDCFDVVIE  131 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~fD~V~~  131 (259)
                      +.++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++..  .++++++++|+.+++++    .+.|| |++
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~  102 (255)
T 3tqs_A           27 PQKTDTLVEIGPGRGALTDYLLTECD-NLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFSSVKTDKPLR-VVG  102 (255)
T ss_dssp             CCTTCEEEEECCTTTTTHHHHTTTSS-EEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGGGSCCSSCEE-EEE
T ss_pred             CCCcCEEEEEcccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHHHhccCCCeE-EEe
Confidence            45678999999999999999999985 999999999999999999865  35799999999987653    24688 677


Q ss_pred             ccee
Q 025039          132 KATM  135 (259)
Q Consensus       132 ~~~l  135 (259)
                      +.++
T Consensus       103 NlPY  106 (255)
T 3tqs_A          103 NLPY  106 (255)
T ss_dssp             ECCH
T ss_pred             cCCc
Confidence            7665

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.08  E-value=1.3e-09  Score=90.32  Aligned_cols=75  Identities=16%  Similarity=0.386  Sum_probs=62.6

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC-CceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN-DCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fD~V~~~~~l  135 (259)
                      .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++...  ++++++++|+.++++++ ..| .|+++.++
T Consensus        29 ~~~~~VLDiG~G~G~lt~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~--~~v~~~~~D~~~~~~~~~~~~-~vv~nlPy  104 (244)
T 1qam_A           29 NEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH--DNFQVLNKDILQFKFPKNQSY-KIFGNIPY  104 (244)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC--CSEEEECCCGGGCCCCSSCCC-EEEEECCG
T ss_pred             CCCCEEEEEeCCchHHHHHHHHcCC-eEEEEECCHHHHHHHHHhhccC--CCeEEEEChHHhCCcccCCCe-EEEEeCCc
Confidence            4678999999999999999999985 9999999999999999987642  47999999999887653 345 56666555

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.08  E-value=1.1e-09  Score=103.71  Aligned_cols=116  Identities=13%  Similarity=0.128  Sum_probs=86.4

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcC------------------------------------------C-CeEEEeeCCHHH
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDG------------------------------------------I-TAITCIDLSAVA   93 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~------------------------------------------~-~~v~~vD~s~~~   93 (259)
                      .++..|||++||+|.+++.++..+                                          . .+++|+|+++.+
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            467899999999999999887652                                          1 279999999999


Q ss_pred             HHHHHHHHhhcCCCC-eEEEEcccCCCcCC--CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC
Q 025039           94 VEKMQERLLLKGYKE-VKVLEADMLDLPFS--NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD  170 (259)
Q Consensus        94 ~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~--~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  170 (259)
                      ++.|++++...|+.+ +++.++|+.++..+  .++||+|++++++..-..+        ........+.+.++.+.+.||
T Consensus       269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~--------~~~l~~ly~~l~~~lk~~~~g  340 (703)
T 3v97_A          269 IQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDS--------EPALIALHSLLGRIMKNQFGG  340 (703)
T ss_dssp             HHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---C--------CHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccc--------hhHHHHHHHHHHHHHHhhCCC
Confidence            999999999999876 89999999886422  3389999999987532110        012233344455555666689


Q ss_pred             cEEEEEecCC
Q 025039          171 GLFISVSFGQ  180 (259)
Q Consensus       171 G~l~~~~~~~  180 (259)
                      |.+++++...
T Consensus       341 ~~~~ilt~~~  350 (703)
T 3v97_A          341 WNLSLFSASP  350 (703)
T ss_dssp             CEEEEEESCH
T ss_pred             CeEEEEeCCH
Confidence            9999987654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.08  E-value=8e-10  Score=92.85  Aligned_cols=77  Identities=19%  Similarity=0.256  Sum_probs=66.0

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC-CceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN-DCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fD~V~~~~~  134 (259)
                      +.++ +|||+|||+|.++..+++.+. +|+++|+++.+++.+++++..   .+++++++|+.++++++ ..+|.|+++.+
T Consensus        45 ~~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~~~~~~~~iv~NlP  119 (271)
T 3fut_A           45 PFTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWEEVPQGSLLVANLP  119 (271)
T ss_dssp             CCCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGGGSCTTEEEEEEEC
T ss_pred             CCCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChhhccCccEEEecCc
Confidence            4567 999999999999999999986 899999999999999998762   47999999999877653 26899999877


Q ss_pred             eee
Q 025039          135 MEV  137 (259)
Q Consensus       135 l~~  137 (259)
                      ++.
T Consensus       120 y~i  122 (271)
T 3fut_A          120 YHI  122 (271)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.08  E-value=2.4e-10  Score=96.90  Aligned_cols=106  Identities=12%  Similarity=0.061  Sum_probs=72.0

Q ss_pred             cCCCCCcEEEEcCCC------CcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEE-EEcccCCCcCCCCc
Q 025039           55 HIKPNSSVLELGCGN------SRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKV-LEADMLDLPFSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~------G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~-~~~d~~~~~~~~~~  125 (259)
                      .++++.+|||+|||+      |.  ..+++. +.. +|+|+|+++.             ++++++ +++|+.+++++ ++
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~~~-~~  123 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVHTA-NK  123 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCCCS-SC
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCCcc-Cc
Confidence            456789999999955      55  434444 322 8999999987             135788 99999887654 68


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ||+|+++...+..    +..-............+++.+.++|||||.|++..+..
T Consensus       124 fD~Vvsn~~~~~~----g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~  174 (290)
T 2xyq_A          124 WDLIISDMYDPRT----KHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  174 (290)
T ss_dssp             EEEEEECCCCCC-------CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             ccEEEEcCCcccc----ccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            9999987532211    00000011122345689999999999999999976654

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.00  E-value=9.4e-11  Score=97.99  Aligned_cols=80  Identities=13%  Similarity=0.109  Sum_probs=66.2

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCH-------HHHHHHHHHHhhcCCCC-eEEEEcccCCC-c-CCC--C
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSA-------VAVEKMQERLLLKGYKE-VKVLEADMLDL-P-FSN--D  124 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~-------~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~-~~~--~  124 (259)
                      .++.+|||+|||+|..++.+++.+. +|+++|+++       .+++.+++++..+++.+ ++++++|+.++ + +++  +
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~  160 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG  160 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence            3568999999999999999999876 899999999       99999999887776655 99999998774 2 333  6


Q ss_pred             ceeEEEecceeee
Q 025039          125 CFDVVIEKATMEV  137 (259)
Q Consensus       125 ~fD~V~~~~~l~~  137 (259)
                      +||+|++++++.+
T Consensus       161 ~fD~V~~dP~~~~  173 (258)
T 2r6z_A          161 KPDIVYLDPMYPE  173 (258)
T ss_dssp             CCSEEEECCCC--
T ss_pred             CccEEEECCCCCC
Confidence            8999999877654

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.99  E-value=2.7e-09  Score=85.45  Aligned_cols=109  Identities=12%  Similarity=0.022  Sum_probs=79.6

Q ss_pred             HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC---CCeEEEEcccCCC----
Q 025039           47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY---KEVKVLEADMLDL----  119 (259)
Q Consensus        47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~----  119 (259)
                      ....++...+.+..+|||+||  |..++++++....+|+.+|.+++..+.|+++++..++   .+++++.+|+.+.    
T Consensus        19 ~~~~~L~~~l~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg   96 (202)
T 3cvo_A           19 AEAEALRMAYEEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWG   96 (202)
T ss_dssp             HHHHHHHHHHHHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGG
T ss_pred             HHHHHHHHHhhCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhccc
Confidence            334444444556789999998  4688888875223999999999999999999998885   3599999986542    


Q ss_pred             -----------c--------C-CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          120 -----------P--------F-SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       120 -----------~--------~-~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                                 +        . ..++||+|+..+-.                    ....+..+.++|+|||++++-.
T Consensus        97 ~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k--------------------~~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A           97 HPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF--------------------RVGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             CBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS--------------------HHHHHHHHHHHCSSCEEEEETT
T ss_pred             ccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC--------------------chhHHHHHHHhcCCCeEEEEeC
Confidence                       1        1 23679999965421                    1356666789999999997643

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.97  E-value=3.5e-09  Score=97.22  Aligned_cols=122  Identities=17%  Similarity=0.159  Sum_probs=88.5

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcC----CCeEEEeeCCHHHHHHHHHHHhhcCC--CCeEEEEcccCCC--c-CCCCceeE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDG----ITAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLDL--P-FSNDCFDV  128 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~--~-~~~~~fD~  128 (259)
                      ++.+|||+|||+|.++..+++..    ...++|+|+++.++..|+.++..+++  +++.+.++|....  + .....||+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            56799999999999998887762    22899999999999999999988887  4578999998765  3 34578999


Q ss_pred             EEecceeeeeeeCC-----CCCCCC---CchhHHHHHHHHHHHHhccc-CCcEEEEEecC
Q 025039          129 VIEKATMEVLFVNS-----GDPWNP---QPETVTKVMAMLEGVHRVLK-PDGLFISVSFG  179 (259)
Q Consensus       129 V~~~~~l~~~~~~~-----~~~~~~---~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  179 (259)
                      |++++++..-....     ...|.+   .+........++..+.+.|+ |||++.++.+.
T Consensus       301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~  360 (542)
T 3lkd_A          301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH  360 (542)
T ss_dssp             EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred             EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence            99999985321000     000100   00001111258999999999 99999988754

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.96  E-value=1e-09  Score=100.97  Aligned_cols=121  Identities=12%  Similarity=0.034  Sum_probs=86.9

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhc----C---------------CCeEEEeeCCHHHHHHHHHHHhhcCCCC-----eEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYND----G---------------ITAITCIDLSAVAVEKMQERLLLKGYKE-----VKVL  112 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~----~---------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~-----v~~~  112 (259)
                      .++.+|||+|||+|.++..+++.    +               ...++|+|+++.+++.|+.++..+++..     +.+.
T Consensus       168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~  247 (541)
T 2ar0_A          168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR  247 (541)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred             CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence            35679999999999998887654    1               1279999999999999999988888765     7888


Q ss_pred             EcccCCCc-CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          113 EADMLDLP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       113 ~~d~~~~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ++|....+ .....||+|++++++....... ..+............++..+.+.|+|||++.++.+
T Consensus       248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~-~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p  313 (541)
T 2ar0_A          248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTN-ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP  313 (541)
T ss_dssp             ESCTTSHHHHTSCCEEEEEECCCCTTCSSCC-CCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eCCCcccccccccCCeEEEECCCcccccchh-hHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence            99887643 3346899999999885431100 00000000011234789999999999999998865

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.91  E-value=1.5e-09  Score=92.50  Aligned_cols=77  Identities=13%  Similarity=0.166  Sum_probs=64.7

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CC---CCceeEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FS---NDCFDVV  129 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~---~~~fD~V  129 (259)
                      +.++.+|||+|||+|..+..+++..+. +|+|+|+|+.+++.|++++...+ .+++++++|+.+++  +.   ..+||.|
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~g~~~~D~V  102 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLGIEKVDGI  102 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhcCCCCCCEE
Confidence            357789999999999999999998533 99999999999999999998877 67999999988764  11   1579999


Q ss_pred             Eecc
Q 025039          130 IEKA  133 (259)
Q Consensus       130 ~~~~  133 (259)
                      ++..
T Consensus       103 l~D~  106 (301)
T 1m6y_A          103 LMDL  106 (301)
T ss_dssp             EEEC
T ss_pred             EEcC
Confidence            8753

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.89  E-value=1.6e-08  Score=85.33  Aligned_cols=75  Identities=13%  Similarity=0.205  Sum_probs=61.0

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCe----EEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCC------c
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITA----ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSND------C  125 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~----v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~------~  125 (259)
                      +.++.+|||+|||+|.++..+++.+. .    |+++|+++.+++.++++.    .++++++++|+.++++++-      .
T Consensus        40 ~~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~~~~~~~~~~~~  114 (279)
T 3uzu_A           40 PERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDFGSIARPGDEP  114 (279)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCCGGGGSCSSSSC
T ss_pred             CCCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCChhHhcccccCC
Confidence            45788999999999999999999876 5    999999999999999984    2479999999998765421      2


Q ss_pred             eeEEEeccee
Q 025039          126 FDVVIEKATM  135 (259)
Q Consensus       126 fD~V~~~~~l  135 (259)
                      .+.|+++.++
T Consensus       115 ~~~vv~NlPY  124 (279)
T 3uzu_A          115 SLRIIGNLPY  124 (279)
T ss_dssp             CEEEEEECCH
T ss_pred             ceEEEEccCc
Confidence            3467776655

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.86  E-value=3.1e-09  Score=97.67  Aligned_cols=134  Identities=11%  Similarity=0.067  Sum_probs=87.8

Q ss_pred             hHHHHhhcccCC-CCCcEEEEcCCCCcchHHHHhcC----------------CCeEEEeeCCHHHHHHHHHHHhhcCCCC
Q 025039           46 SHFRHLVQPHIK-PNSSVLELGCGNSRLSEGLYNDG----------------ITAITCIDLSAVAVEKMQERLLLKGYKE  108 (259)
Q Consensus        46 ~~~~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~~----------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~  108 (259)
                      +.+..++...+. ...+|||+|||+|.+++.+++..                ...++|+|+++.++..|+.++..+++..
T Consensus       231 ~~Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~  310 (544)
T 3khk_A          231 KSIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF  310 (544)
T ss_dssp             HHHHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence            444444443332 23499999999999888775421                1279999999999999999998887643


Q ss_pred             -eEEEEcccCCCc-CCCCceeEEEecceeeeee-eC----CCCCCCC---------CchhHHHHHHHHHHHHhcccCCcE
Q 025039          109 -VKVLEADMLDLP-FSNDCFDVVIEKATMEVLF-VN----SGDPWNP---------QPETVTKVMAMLEGVHRVLKPDGL  172 (259)
Q Consensus       109 -v~~~~~d~~~~~-~~~~~fD~V~~~~~l~~~~-~~----~~~~~~~---------~~~~~~~~~~~l~~~~~~LkpgG~  172 (259)
                       +.+.++|....+ .....||+|++++++..-- ..    ....|..         .+........+++.+.+.|+|||+
T Consensus       311 ~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr  390 (544)
T 3khk_A          311 NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGS  390 (544)
T ss_dssp             BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEE
T ss_pred             ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCce
Confidence             334677766543 3457899999999986310 00    0000000         000111123689999999999999


Q ss_pred             EEEEecC
Q 025039          173 FISVSFG  179 (259)
Q Consensus       173 l~~~~~~  179 (259)
                      +.++.+.
T Consensus       391 ~aiVlP~  397 (544)
T 3khk_A          391 MALLLAN  397 (544)
T ss_dssp             EEEEEET
T ss_pred             EEEEecc
Confidence            9988653

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.85  E-value=9.8e-09  Score=85.25  Aligned_cols=76  Identities=21%  Similarity=0.321  Sum_probs=60.4

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCc-eeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDC-FDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~V~~~~~  134 (259)
                      ..++.+|||+|||+|.++..+++.+..+|+++|+++.+++.++++ .   ..+++++++|+.++++++.. ...|+++.+
T Consensus        29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~---~~~v~~i~~D~~~~~~~~~~~~~~vv~NlP  104 (249)
T 3ftd_A           29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G---DERLEVINEDASKFPFCSLGKELKVVGNLP  104 (249)
T ss_dssp             CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C---CTTEEEECSCTTTCCGGGSCSSEEEEEECC
T ss_pred             CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c---CCCeEEEEcchhhCChhHccCCcEEEEECc
Confidence            346789999999999999999999644999999999999999887 2   24799999999987754321 236666655


Q ss_pred             e
Q 025039          135 M  135 (259)
Q Consensus       135 l  135 (259)
                      +
T Consensus       105 y  105 (249)
T 3ftd_A          105 Y  105 (249)
T ss_dssp             T
T ss_pred             h
Confidence            5

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.85  E-value=3.6e-09  Score=98.21  Aligned_cols=101  Identities=17%  Similarity=0.232  Sum_probs=75.4

Q ss_pred             CCcEEEEcCCCCcchHHHHhc---CCC--eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEec
Q 025039           59 NSSVLELGCGNSRLSEGLYND---GIT--AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~---~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      ...|||+|||+|-+....+++   +..  +|++||.|+ +...+++..+.+++.+ |+++++|+.++..+ +++|+|++-
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE  435 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE  435 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence            357999999999985554443   332  789999997 5667888888888876 99999999998765 689999975


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                      .+=..++            . +...+++....+.|||||+++
T Consensus       436 wMG~fLl------------~-E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          436 LLGSFAD------------N-ELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CCBTTBG------------G-GCHHHHHHHHGGGEEEEEEEE
T ss_pred             cCccccc------------c-cCCHHHHHHHHHhcCCCcEEc
Confidence            3211111            1 122367888889999999987

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.81  E-value=3.9e-08  Score=83.08  Aligned_cols=111  Identities=23%  Similarity=0.351  Sum_probs=82.3

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhc-----CCCCeEEEEcccCCC-cCCCCceeE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLK-----GYKEVKVLEADMLDL-PFSNDCFDV  128 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~~-~~~~~~fD~  128 (259)
                      .+.+.+||-+|.|.|..+..+++... .+++.+|+++.+++.+++.+...     .-++++++.+|.... ....++||+
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv  160 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV  160 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence            35678999999999999999998743 39999999999999999876432     225699999999874 334578999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      |+.... +-..  +...+        --.++++.++++|+|||+++.-.
T Consensus       161 Ii~D~~-dp~~--~~~~L--------~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          161 IISDCT-DPIG--PGESL--------FTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             EEESCC-CCCC--TTCCS--------SCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEeCC-CcCC--Cchhh--------cCHHHHHHHHHHhCCCCEEEEec
Confidence            996432 1000  00000        11478999999999999999853

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.80  E-value=2.5e-08  Score=94.07  Aligned_cols=123  Identities=12%  Similarity=0.077  Sum_probs=80.4

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC----CeEEEeeCCHHHHHHH--HHHHhh----cCCCCeEEEEcccCCCc-CCCCc
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI----TAITCIDLSAVAVEKM--QERLLL----KGYKEVKVLEADMLDLP-FSNDC  125 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~----~~v~~vD~s~~~~~~a--~~~~~~----~~~~~v~~~~~d~~~~~-~~~~~  125 (259)
                      .++.+|||+|||+|.++..+++...    .+++|+|+++.+++.|  +.++..    .+.....+...|+.... .....
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k  399 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN  399 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence            4578999999999999999987642    2799999999999999  554433    23333455555665532 23468


Q ss_pred             eeEEEecceeeeeeeCCCC------------CCCC--CchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          126 FDVVIEKATMEVLFVNSGD------------PWNP--QPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~------------~~~~--~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ||+|++++++.........            +..+  ..........+++.+.++|+|||++.++.+.
T Consensus       400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~  467 (878)
T 3s1s_A          400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK  467 (878)
T ss_dssp             EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred             CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence            9999999988321000000            0000  0000012345788899999999999998764

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.76  E-value=3.5e-09  Score=98.38  Aligned_cols=102  Identities=19%  Similarity=0.281  Sum_probs=73.7

Q ss_pred             CCcEEEEcCCCCcchHHHHh----cC---------CC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCC-
Q 025039           59 NSSVLELGCGNSRLSEGLYN----DG---------IT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFS-  122 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~----~~---------~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-  122 (259)
                      +..|||+|||+|-++...+.    .+         .. +|++||.++.++..++.+.. +++.+ |+++.+|+.++..+ 
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            46899999999999753322    22         22 89999999988766665543 67665 99999999987652 


Q ss_pred             ----CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          123 ----NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       123 ----~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                          .+++|+|++-.. ..+.            ..+...+.|..+.+.|||||+++
T Consensus       489 ~~~~~ekVDIIVSElm-Gsfl------------~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          489 KDRGFEQPDIIVSELL-GSFG------------DNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHTTCCCCSEEEECCC-BTTB------------GGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccCCCCcccEEEEecc-cccc------------chhccHHHHHHHHHhCCCCcEEE
Confidence                478999998533 1110            11334568888889999999887

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.75  E-value=8.9e-09  Score=85.63  Aligned_cols=75  Identities=17%  Similarity=0.253  Sum_probs=59.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCe--EEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC-----CceeE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITA--ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN-----DCFDV  128 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~--v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~fD~  128 (259)
                      +.++.+|||+|||+|.++. +.. +. +  |+++|+++.+++.+++++...  ++++++++|+.++++++     +..|.
T Consensus        19 ~~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~~~~~~~~~   93 (252)
T 1qyr_A           19 PQKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAEKMGQPLR   93 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHHHHTSCEE
T ss_pred             CCCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhhcccCCceE
Confidence            4567899999999999999 654 54 6  999999999999999887543  47999999998876432     23478


Q ss_pred             EEeccee
Q 025039          129 VIEKATM  135 (259)
Q Consensus       129 V~~~~~l  135 (259)
                      |+++.++
T Consensus        94 vvsNlPY  100 (252)
T 1qyr_A           94 VFGNLPY  100 (252)
T ss_dssp             EEEECCT
T ss_pred             EEECCCC
Confidence            8887665

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.68  E-value=6.7e-08  Score=72.56  Aligned_cols=99  Identities=11%  Similarity=0.162  Sum_probs=69.0

Q ss_pred             hHHHHhhcccCCCCCcEEEEcCCCC-cchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC
Q 025039           46 SHFRHLVQPHIKPNSSVLELGCGNS-RLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN  123 (259)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLDiGcG~G-~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  123 (259)
                      ..+...+.....++.+|||+|||.| ..+..|++ .|. .|+++|+++.+++               +++.|+++.....
T Consensus        23 e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~---------------~v~dDiF~P~~~~   86 (153)
T 2k4m_A           23 NDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG---------------IVRDDITSPRMEI   86 (153)
T ss_dssp             HHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT---------------EECCCSSSCCHHH
T ss_pred             HHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc---------------eEEccCCCCcccc
Confidence            4566666666667789999999999 59999997 888 8999999986443               7888888744321


Q ss_pred             -CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          124 -DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       124 -~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                       ..||+|++..+                  ..+++..+-++++.+  |.-+++..++.
T Consensus        87 Y~~~DLIYsirP------------------P~El~~~i~~lA~~v--~adliI~pL~~  124 (153)
T 2k4m_A           87 YRGAALIYSIRP------------------PAEIHSSLMRVADAV--GARLIIKPLTG  124 (153)
T ss_dssp             HTTEEEEEEESC------------------CTTTHHHHHHHHHHH--TCEEEEECBTT
T ss_pred             cCCcCEEEEcCC------------------CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence             37999987432                  234444444455433  56777766554

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.67  E-value=1.7e-08  Score=84.10  Aligned_cols=79  Identities=16%  Similarity=0.175  Sum_probs=60.4

Q ss_pred             CCC--CcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh-------cC-C-CCeEEEEcccCCC-cCCCC
Q 025039           57 KPN--SSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-------KG-Y-KEVKVLEADMLDL-PFSND  124 (259)
Q Consensus        57 ~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~-~-~~v~~~~~d~~~~-~~~~~  124 (259)
                      .++  .+|||+|||+|..+..+++.|. +|+++|.++.+.+.++++++.       ++ + .+++++++|..++ +....
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~  163 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP  163 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSS
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcc
Confidence            456  8999999999999999999987 899999999876666655432       22 3 3589999998763 31124


Q ss_pred             ceeEEEecceee
Q 025039          125 CFDVVIEKATME  136 (259)
Q Consensus       125 ~fD~V~~~~~l~  136 (259)
                      .||+|++.+++.
T Consensus       164 ~fDvV~lDP~y~  175 (258)
T 2oyr_A          164 RPQVVYLDPMFP  175 (258)
T ss_dssp             CCSEEEECCCCC
T ss_pred             cCCEEEEcCCCC
Confidence            799999887764

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.59  E-value=5.9e-08  Score=80.61  Aligned_cols=121  Identities=13%  Similarity=0.156  Sum_probs=74.9

Q ss_pred             HHHhhc-ccCCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCc
Q 025039           48 FRHLVQ-PHIKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDC  125 (259)
Q Consensus        48 ~~~~l~-~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  125 (259)
                      +.++.. ..+.++.+|||+|||+|..+..+++. +...++++|+...+...... ....+. ++.....++....++.+.
T Consensus        63 L~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-~~~~g~-~ii~~~~~~dv~~l~~~~  140 (277)
T 3evf_A           63 LRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-VQSLGW-NIITFKDKTDIHRLEPVK  140 (277)
T ss_dssp             HHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-CCBTTG-GGEEEECSCCTTTSCCCC
T ss_pred             HHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-cCcCCC-CeEEEeccceehhcCCCC
Confidence            334333 34567889999999999999988876 33378888887432100000 000111 444455655444556778


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEecC
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSFG  179 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  179 (259)
                      ||+|+|....+ .    +.+|.    +......+|+.+.++|+|| |.|++-.|.
T Consensus       141 ~DlVlsD~apn-s----G~~~~----D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          141 CDTLLCDIGES-S----SSSVT----EGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             CSEEEECCCCC-C----SCHHH----HHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             ccEEEecCccC-c----CchHH----HHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            99999976544 2    21110    1112224578889999999 999997776

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.45  E-value=3.7e-07  Score=79.83  Aligned_cols=124  Identities=14%  Similarity=0.175  Sum_probs=78.6

Q ss_pred             CCcEEEEcCCCCcchHHHHh--------c----C---CC-eEEEeeCCHHHHHHHHHHHhhcC-------------CCC-
Q 025039           59 NSSVLELGCGNSRLSEGLYN--------D----G---IT-AITCIDLSAVAVEKMQERLLLKG-------------YKE-  108 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~--------~----~---~~-~v~~vD~s~~~~~~a~~~~~~~~-------------~~~-  108 (259)
                      +.+|+|+|||+|..+..+..        .    +   +. +|+..|+-.......-+.+....             .+. 
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            57899999999998887732        1    1   33 78888877666555444433210             011 


Q ss_pred             -eEEEEcccCCCcCCCCceeEEEecceeeeeeeCC-------CCCCCCC--------ch--------hHHHHHHHHHHHH
Q 025039          109 -VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNS-------GDPWNPQ--------PE--------TVTKVMAMLEGVH  164 (259)
Q Consensus       109 -v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~-------~~~~~~~--------~~--------~~~~~~~~l~~~~  164 (259)
                       +..+.+.+..-.++++++|+|+++.++|.+-..+       +..|+..        |.        -..+...+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2333455555457889999999999998763111       0111110        00        0125667899999


Q ss_pred             hcccCCcEEEEEecCCcc
Q 025039          165 RVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       165 ~~LkpgG~l~~~~~~~~~  182 (259)
                      +.|+|||++++...+.+.
T Consensus       213 ~eL~pGG~mvl~~~gr~~  230 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRTS  230 (374)
T ss_dssp             HHEEEEEEEEEEEEECCC
T ss_pred             HHhCCCCEEEEEEecCCC
Confidence            999999999998776543

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.41  E-value=1.1e-06  Score=76.96  Aligned_cols=122  Identities=12%  Similarity=0.059  Sum_probs=78.2

Q ss_pred             CCcEEEEcCCCCcchHHHHhc-----------------CCC-eEEEeeCC-----------HHHHHHHHHHHhhcCCCCe
Q 025039           59 NSSVLELGCGNSRLSEGLYND-----------------GIT-AITCIDLS-----------AVAVEKMQERLLLKGYKEV  109 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~-----------------~~~-~v~~vD~s-----------~~~~~~a~~~~~~~~~~~v  109 (259)
                      ..+|+|+||++|..+..+...                 .+. +|+..|+-           +.+.+.+++... ... +.
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g-~~~-~~  130 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENG-RKI-GS  130 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTC-CCT-TS
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhcc-CCC-Cc
Confidence            578999999999988877664                 133 78888977           555544433211 011 22


Q ss_pred             EEE---EcccCCCcCCCCceeEEEecceeeeeeeCCC-------CCCCCC--------chh---------HHHHHHHHHH
Q 025039          110 KVL---EADMLDLPFSNDCFDVVIEKATMEVLFVNSG-------DPWNPQ--------PET---------VTKVMAMLEG  162 (259)
Q Consensus       110 ~~~---~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~-------~~~~~~--------~~~---------~~~~~~~l~~  162 (259)
                      .+.   .+.+..-.++++++|+|+++.++|.+-..+.       .+|+..        |..         ..|...+|+.
T Consensus       131 ~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~  210 (384)
T 2efj_A          131 CLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRI  210 (384)
T ss_dssp             EEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            333   3444455578899999999999987632211       112221        111         1244556888


Q ss_pred             HHhcccCCcEEEEEecCCcc
Q 025039          163 VHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       163 ~~~~LkpgG~l~~~~~~~~~  182 (259)
                      .++.|+|||++++...+.+.
T Consensus       211 Ra~eL~pGG~mvl~~~gr~~  230 (384)
T 2efj_A          211 HSEELISRGRMLLTFICKED  230 (384)
T ss_dssp             HHHHEEEEEEEEEEEECCCT
T ss_pred             HHHHhccCCeEEEEEecCCC
Confidence            99999999999999887654

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.41  E-value=1.1e-07  Score=79.08  Aligned_cols=114  Identities=14%  Similarity=0.075  Sum_probs=70.6

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      .+.++.+|||+|||+|..+..+++. +...++|+|+...+...+.. ....+ .++.....++....++...+|+|+|..
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~~~~g-~~ii~~~~~~dv~~l~~~~~DvVLSDm  164 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-RTTLG-WNLIRFKDKTDVFNMEVIPGDTLLCDI  164 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT-GGGEEEECSCCGGGSCCCCCSEEEECC
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-cccCC-CceEEeeCCcchhhcCCCCcCEEEecC
Confidence            4567889999999999999988865 43389999998653221111 00112 133333333222234567899999976


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC--cEEEEEecC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD--GLFISVSFG  179 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~~  179 (259)
                      ..+ .    +.++.    +......+|+-+.++|+||  |.|++-.|.
T Consensus       165 Apn-s----G~~~~----D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          165 GES-S----PSIAV----EEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             CCC-C----SCHHH----HHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             ccC-C----CChHH----HHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            654 2    11110    1112224688888999999  999998777

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.40  E-value=1.1e-06  Score=73.87  Aligned_cols=105  Identities=13%  Similarity=0.094  Sum_probs=79.6

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhc----C-CC-eEEEeeCCHH--------------------------HHHHHHHHHhhc
Q 025039           57 KPNSSVLELGCGNSRLSEGLYND----G-IT-AITCIDLSAV--------------------------AVEKMQERLLLK  104 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~----~-~~-~v~~vD~s~~--------------------------~~~~a~~~~~~~  104 (259)
                      ..+..|||+|+..|..++.++..    + .. +++++|..+.                          .++.++++++..
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            34679999999999999887654    2 13 8999996421                          467789999988


Q ss_pred             CC--CCeEEEEcccCC-Cc-CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          105 GY--KEVKVLEADMLD-LP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       105 ~~--~~v~~~~~d~~~-~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ++  ++++++.+++.+ ++ .+.++||+|+...-                 ..+.....++.+...|+|||++++-++
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD-----------------~y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD-----------------LYESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC-----------------SHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC-----------------ccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            87  469999999865 33 33568999985432                 113456889999999999999998665

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.39  E-value=9.5e-07  Score=76.93  Aligned_cols=115  Identities=20%  Similarity=0.227  Sum_probs=78.7

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC--------CCCeEEEEcccCCCc----CCCC
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG--------YKEVKVLEADMLDLP----FSND  124 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--------~~~v~~~~~d~~~~~----~~~~  124 (259)
                      .++.+||-+|.|.|..+.++++....+++.+|+++.+++.+++.+....        .++++++.+|....-    ...+
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            3568999999999999999998765699999999999999999764321        124788888886532    1345


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      .||+|+....-...   ...+.  .+....-.+++++.++++|+|||+++.-
T Consensus       284 ~yDvIIvDl~D~~~---s~~p~--g~a~~Lft~eFy~~~~~~L~p~GVlv~Q  330 (381)
T 3c6k_A          284 EFDYVINDLTAVPI---STSPE--EDSTWEFLRLILDLSMKVLKQDGKYFTQ  330 (381)
T ss_dssp             CEEEEEEECCSSCC---CCC------CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceeEEEECCCCCcc---cCccc--CcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            79999964210000   00000  0011122367899999999999999874

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.39  E-value=2.8e-07  Score=76.77  Aligned_cols=105  Identities=12%  Similarity=0.154  Sum_probs=68.4

Q ss_pred             CCCcEEEEcCCCCcchHHHHhc-------CC-----C-eEEEeeCCH---HHHH-----------HHHHHHhhc------
Q 025039           58 PNSSVLELGCGNSRLSEGLYND-------GI-----T-AITCIDLSA---VAVE-----------KMQERLLLK------  104 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~-------~~-----~-~v~~vD~s~---~~~~-----------~a~~~~~~~------  104 (259)
                      ++.+|||+|+|+|..+..+++.       ++     . +++++|..+   +.+.           .+++.+...      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            5579999999999988876553       33     2 799999876   4444           445554431      


Q ss_pred             --------CCCCeEEEEcccCC-CcC-CC---CceeEEEecceeeeeeeCCCCCCCCCchhHHH-HHHHHHHHHhcccCC
Q 025039          105 --------GYKEVKVLEADMLD-LPF-SN---DCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-VMAMLEGVHRVLKPD  170 (259)
Q Consensus       105 --------~~~~v~~~~~d~~~-~~~-~~---~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~Lkpg  170 (259)
                              +..++++..+|+.+ ++. +.   ..||+|+..+    +        .|.. +.+. ..++++.+.++|+||
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~----f--------sp~~-~p~lw~~~~l~~l~~~L~pG  206 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG----F--------APAK-NPDMWTQNLFNAMARLARPG  206 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS----S--------CTTT-CGGGCCHHHHHHHHHHEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC----C--------Cccc-ChhhcCHHHHHHHHHHcCCC
Confidence                    11246788899876 332 22   2799999532    1        1100 0011 257999999999999


Q ss_pred             cEEEE
Q 025039          171 GLFIS  175 (259)
Q Consensus       171 G~l~~  175 (259)
                      |+|+.
T Consensus       207 G~l~t  211 (257)
T 2qy6_A          207 GTLAT  211 (257)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            99885

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.36  E-value=1.2e-06  Score=80.38  Aligned_cols=133  Identities=18%  Similarity=0.210  Sum_probs=86.2

Q ss_pred             hHHHHhhcccC--CCCCcEEEEcCCCCcchHHHHhc----C----------CCeEEEeeCCHHHHHHHHHHHhhcCCCCe
Q 025039           46 SHFRHLVQPHI--KPNSSVLELGCGNSRLSEGLYND----G----------ITAITCIDLSAVAVEKMQERLLLKGYKEV  109 (259)
Q Consensus        46 ~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~----~----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v  109 (259)
                      +.+..++...+  .++.+|+|.+||+|.++..+.+.    +          ...++|+|+++.+...|+-++..++....
T Consensus       203 ~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~  282 (530)
T 3ufb_A          203 RPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYP  282 (530)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCC
T ss_pred             HHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccc
Confidence            44555554333  35679999999999998876542    1          12699999999999999999888887667


Q ss_pred             EEEEcccCCCcC----CCCceeEEEecceeeeeeeCCC-CCCCCCchhHHHHHHHHHHHHhccc-------CCcEEEEEe
Q 025039          110 KVLEADMLDLPF----SNDCFDVVIEKATMEVLFVNSG-DPWNPQPETVTKVMAMLEGVHRVLK-------PDGLFISVS  177 (259)
Q Consensus       110 ~~~~~d~~~~~~----~~~~fD~V~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~Lk-------pgG~l~~~~  177 (259)
                      .+..+|....+.    ....||+|++++++..-..... ..+...+........+++.+.+.|+       |||++.++.
T Consensus       283 ~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl  362 (530)
T 3ufb_A          283 RIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV  362 (530)
T ss_dssp             EEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred             cccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence            788888765432    2357999999999843210000 0000000011122345666666665       799999886


Q ss_pred             c
Q 025039          178 F  178 (259)
Q Consensus       178 ~  178 (259)
                      +
T Consensus       363 P  363 (530)
T 3ufb_A          363 P  363 (530)
T ss_dssp             E
T ss_pred             c
Confidence            5

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.34  E-value=2.3e-06  Score=74.26  Aligned_cols=100  Identities=11%  Similarity=0.094  Sum_probs=70.3

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .+.+|.+|||+||++|..+..++++|. +|++||+.+- -..    +.  ..++|+++.+|......+...+|+|+|..+
T Consensus       208 ~l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l-~~~----l~--~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~  279 (375)
T 4auk_A          208 RLANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPM-AQS----LM--DTGQVTWLREDGFKFRPTRSNISWMVCDMV  279 (375)
T ss_dssp             HSCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCC-CHH----HH--TTTCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred             cCCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhc-Chh----hc--cCCCeEEEeCccccccCCCCCcCEEEEcCC
Confidence            357899999999999999999999987 9999998642 111    11  225799999999887766678999999765


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .                ......+++.........++.++.+-+
T Consensus       280 ~----------------~p~~~~~l~~~wl~~~~~~~aI~~lKL  307 (375)
T 4auk_A          280 E----------------KPAKVAALMAQWLVNGWCRETIFNLKL  307 (375)
T ss_dssp             S----------------CHHHHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred             C----------------ChHHhHHHHHHHHhccccceEEEEEEe
Confidence            3                223344444444444444566555544

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.27  E-value=2.2e-06  Score=74.51  Aligned_cols=125  Identities=11%  Similarity=0.125  Sum_probs=85.3

Q ss_pred             CCCcEEEEcCCCCcchHHHHhc------------C----CC-eEEEeeCCHHHHHHHHHHHhhcCC--CC--eEEEEccc
Q 025039           58 PNSSVLELGCGNSRLSEGLYND------------G----IT-AITCIDLSAVAVEKMQERLLLKGY--KE--VKVLEADM  116 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~------------~----~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~--v~~~~~d~  116 (259)
                      ...+|+|+||++|..+..+...            +    +. +|+..|+-......+-+.+....-  ..  +.-+.+.+
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            4478999999999887766554            2    23 899999988888887776643110  11  23344556


Q ss_pred             CCCcCCCCceeEEEecceeeeeeeCCCC-------CCCC-----------CchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          117 LDLPFSNDCFDVVIEKATMEVLFVNSGD-------PWNP-----------QPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       117 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~-------~~~~-----------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ....++.+++|+|+++.++|.+-.-+..       -|..           ...-..|...+|+..++.|+|||++++...
T Consensus       131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~  210 (359)
T 1m6e_X          131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred             hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence            5556788999999999999876322211       0000           001235777889999999999999999877


Q ss_pred             CCcc
Q 025039          179 GQPH  182 (259)
Q Consensus       179 ~~~~  182 (259)
                      +.+.
T Consensus       211 gr~~  214 (359)
T 1m6e_X          211 GRRS  214 (359)
T ss_dssp             ECSS
T ss_pred             cCCC
Confidence            6644

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.20  E-value=3.5e-06  Score=70.35  Aligned_cols=72  Identities=17%  Similarity=0.338  Sum_probs=60.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----CCCCceeEEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVVI  130 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~V~  130 (259)
                      +.++..+||.+||.|..+..+++.+. +|+|+|.++.+++.+++ +..   ++++++++++.++.     ...+++|.|+
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~~g-~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~~g~~~vDgIL   94 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAALGVERVDGIL   94 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHCCC-EEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHHcCCCCcCEEE
Confidence            45788999999999999999999844 99999999999999998 654   47999999998753     1225799998


Q ss_pred             ec
Q 025039          131 EK  132 (259)
Q Consensus       131 ~~  132 (259)
                      +.
T Consensus        95 ~D   96 (285)
T 1wg8_A           95 AD   96 (285)
T ss_dssp             EE
T ss_pred             eC
Confidence            63

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.14  E-value=1.2e-05  Score=67.39  Aligned_cols=113  Identities=16%  Similarity=0.177  Sum_probs=69.5

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      ..+.++.+|||+||++|..+..+++. +...|+|+|+...+...... ....+ .++.....++.-..+..+.+|+|+|.
T Consensus        77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~-~~iv~~~~~~di~~l~~~~~DlVlsD  154 (300)
T 3eld_A           77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLG-WNIVKFKDKSNVFTMPTEPSDTLLCD  154 (300)
T ss_dssp             TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT-GGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred             CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccC-CceEEeecCceeeecCCCCcCEEeec
Confidence            34568899999999999999999986 43378999997532110000 00001 12332332222223345789999997


Q ss_pred             ceeeeeeeCCCCCCCCCchhHH--HHHHHHHHHHhcccCC-cEEEEEecC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVT--KVMAMLEGVHRVLKPD-GLFISVSFG  179 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~Lkpg-G~l~~~~~~  179 (259)
                      ...+ .    +.      ...+  ....+|+-+.++|+|| |.|++-.|.
T Consensus       155 ~APn-s----G~------~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          155 IGES-S----SN------PLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             CCCC-C----SS------HHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             CcCC-C----CC------HHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            5543 2    11      0111  2235688888999999 999998776

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.08  E-value=7.7e-06  Score=69.41  Aligned_cols=56  Identities=16%  Similarity=0.048  Sum_probs=47.7

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK  104 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~  104 (259)
                      +..++.....++..|||++||+|..++.+++.|. +++|+|+++.+++.|++++...
T Consensus       225 ~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          225 AERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            3344444446789999999999999999999987 9999999999999999998654

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.82  E-value=4e-05  Score=62.00  Aligned_cols=114  Identities=20%  Similarity=0.272  Sum_probs=73.8

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc-ccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~~fD~V~~~  132 (259)
                      .+.++.+|||+||++|..+..++.. +..+|+++|+-..--+.- ......|++.++|+.+ |+..++  ...+|+|+|.
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gwn~v~fk~gvDv~~~~--~~~~DtllcD  151 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGWNIVKLMSGKDVFYLP--PEKCDTLLCD  151 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTTTSEEEECSCCGGGCC--CCCCSEEEEC
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCcCceEEEeccceeecC--CccccEEEEe
Confidence            4568889999999999999977766 444899999875322100 0123446666999988 876654  2579999985


Q ss_pred             ceeeeeeeCCCCCCCCCchhHH-HHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          133 ATMEVLFVNSGDPWNPQPETVT-KVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      ..=          .-+.|.-.. ...++|+-+.++|++ |-+++-.+.+.+
T Consensus       152 Ige----------Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~  191 (267)
T 3p8z_A          152 IGE----------SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM  191 (267)
T ss_dssp             CCC----------CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred             cCC----------CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence            221          011111111 123477777899998 788876665544

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.82  E-value=2.8e-05  Score=64.58  Aligned_cols=57  Identities=18%  Similarity=0.120  Sum_probs=48.0

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG  105 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~  105 (259)
                      +..++.....++..|||+.||+|..+..+.+.|. +++|+|+++..++.+++++...+
T Consensus       202 ~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          202 IERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcc
Confidence            3445555567889999999999999999999987 99999999999999999987654

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.80  E-value=1.1e-05  Score=66.15  Aligned_cols=107  Identities=18%  Similarity=0.144  Sum_probs=64.9

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhc--CC---CeEEEeeC--CHHHHHHHHHHHhh-cCCCCeEEEEc-ccCCCcCCCCc
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYND--GI---TAITCIDL--SAVAVEKMQERLLL-KGYKEVKVLEA-DMLDLPFSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~---~~v~~vD~--s~~~~~~a~~~~~~-~~~~~v~~~~~-d~~~~~~~~~~  125 (259)
                      .++++.+|||+||++|..+..+++.  ..   ..++++|+  .|-        ... .++.-+.++.+ |+.++.  ...
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~--------~~~~~Gv~~i~~~~G~Df~~~~--~~~  139 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPM--------LMQSYGWNIVTMKSGVDVFYKP--SEI  139 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCC--------CCCSTTGGGEEEECSCCGGGSC--CCC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCC--------cccCCCceEEEeeccCCccCCC--CCC
Confidence            5678999999999999999999887  21   13445552  110        000 12111355556 888744  457


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCc-EEEEEecCC
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG-LFISVSFGQ  180 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~  180 (259)
                      +|+|+|...-. .    +++.   .+..... .+|+-+.++|+||| .|++-.|..
T Consensus       140 ~DvVLSDMAPn-S----G~~~---vD~~Rs~-~aL~~A~~~Lk~gG~~FvvKVFqg  186 (269)
T 2px2_A          140 SDTLLCDIGES-S----PSAE---IEEQRTL-RILEMVSDWLSRGPKEFCIKILCP  186 (269)
T ss_dssp             CSEEEECCCCC-C----SCHH---HHHHHHH-HHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             CCEEEeCCCCC-C----CccH---HHHHHHH-HHHHHHHHHhhcCCcEEEEEECCC
Confidence            99999864321 1    1100   0111111 26777779999999 999877764

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.70  E-value=0.00022  Score=59.50  Aligned_cols=111  Identities=17%  Similarity=0.260  Sum_probs=71.4

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc-ccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~~fD~V~~~  132 (259)
                      .+.++..|||+||++|..+..++.. |...|+|+|+-..--+.- ......+...+.++.+ |+..++.  ..+|+|+|.
T Consensus        91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcD  167 (321)
T 3lkz_A           91 FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCD  167 (321)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEEC
T ss_pred             CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCCcceEEEeccCHhhCCC--CCCCEEEEE
Confidence            4567889999999999999977766 444899999875311000 0001223334778776 8776653  569999985


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHH---HHHHHHHHhcccCC-cEEEEEecCC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKV---MAMLEGVHRVLKPD-GLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~Lkpg-G~l~~~~~~~  180 (259)
                      -. ...           +....+.   ..+|+-+.++|++| |-+++-.+.+
T Consensus       168 ig-eSs-----------~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p  207 (321)
T 3lkz_A          168 IG-ESS-----------SSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP  207 (321)
T ss_dssp             CC-CCC-----------SCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             Cc-cCC-----------CChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence            33 111           1111122   33677778999999 8888866665

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.57  E-value=3.6e-05  Score=64.29  Aligned_cols=100  Identities=12%  Similarity=0.064  Sum_probs=76.0

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-Cc---CCCCceeEEEecc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LP---FSNDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~---~~~~~fD~V~~~~  133 (259)
                      .+..+||+-+|+|.+++.+.+.+ .+++.+|.++..++..+++++.  .+++++...|... +.   .+...||+|++.+
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP  167 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  167 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             cCCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence            35678999999999999999865 5999999999999999999875  2468999999754 21   2335799999887


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHh--cccCCcEEEE
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHR--VLKPDGLFIS  175 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~  175 (259)
                      ++..               ..+..++++.+.+  .+.|+|++++
T Consensus       168 PYe~---------------k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          168 SYER---------------KEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             CCCS---------------TTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCC---------------CcHHHHHHHHHHHhCccCCCeEEEE
Confidence            7642               1355566666654  4568888886

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.35  E-value=7e-05  Score=79.76  Aligned_cols=103  Identities=19%  Similarity=0.174  Sum_probs=54.6

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcC------CCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-cCCCCceeEEE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDG------ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-PFSNDCFDVVI  130 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~  130 (259)
                      +..+|||+|.|+|..+..+.+..      ..+++..|+|+...+.++++++..   ++.....|..+. ++...+||+|+
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---di~~~~~d~~~~~~~~~~~ydlvi 1316 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---HVTQGQWDPANPAPGSLGKADLLV 1316 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---TEEEECCCSSCCCC-----CCEEE
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---ccccccccccccccCCCCceeEEE
Confidence            56799999999998766554431      127899999998888888877542   233221233221 22345799999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +..++|..               .+....+.+++++|||||.+++.+.
T Consensus      1317 a~~vl~~t---------------~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1317 CNCALATL---------------GDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             EECC-----------------------------------CCEEEEEEC
T ss_pred             Eccccccc---------------ccHHHHHHHHHHhcCCCcEEEEEec
Confidence            99888654               5677899999999999999998753

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.32  E-value=0.00086  Score=58.04  Aligned_cols=58  Identities=17%  Similarity=0.163  Sum_probs=49.8

Q ss_pred             CCcEEEEcCCCCcchHHHHhcC-CCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 025039           59 NSSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL  119 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  119 (259)
                      +..|||||.|.|.++..|++.+ +.+++++|+++..+...++.+ .  .++++++.+|+.++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--GSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--TSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--CCCEEEEECCccch
Confidence            5889999999999999999863 348999999999999998876 2  35799999999764

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.28  E-value=0.0027  Score=54.58  Aligned_cols=108  Identities=19%  Similarity=0.202  Sum_probs=80.1

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcC---------------------CCCeEEEEc
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG---------------------YKEVKVLEA  114 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---------------------~~~v~~~~~  114 (259)
                      .+...|+.+|||.......+...+.. .++-+|. |++++.-++.+...+                     -++..++..
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~  174 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  174 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence            35688999999999999988876443 6777776 888887777765531                     135788888


Q ss_pred             ccCCCc--------C-CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          115 DMLDLP--------F-SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       115 d~~~~~--------~-~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |+.+..        . ..+...++++-+++.++             ..+...++++.+.+.. |+|.+++.+.-
T Consensus       175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL-------------~~~~~~~ll~~ia~~~-~~~~~v~~e~i  234 (334)
T 1rjd_A          175 DLNDITETTRLLDVCTKREIPTIVISECLLCYM-------------HNNESQLLINTIMSKF-SHGLWISYDPI  234 (334)
T ss_dssp             CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-------------CHHHHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred             CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCC-------------CHHHHHHHHHHHHhhC-CCcEEEEEecc
Confidence            887632        1 22456788888999888             6678889999998877 78887766543

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.22  E-value=0.00039  Score=59.46  Aligned_cols=73  Identities=14%  Similarity=0.190  Sum_probs=57.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CC----CCcee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FS----NDCFD  127 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~----~~~fD  127 (259)
                      +.++..++|..||.|..+..+++. ++. +|+|+|.++.+++.++ ++.   -++++++++++.++.  ++    .+++|
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~---~~Rv~lv~~nF~~l~~~L~~~g~~~~vD  130 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID---DPRFSIIHGPFSALGEYVAERDLIGKID  130 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC---CTTEEEEESCGGGHHHHHHHTTCTTCEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc---CCcEEEEeCCHHHHHHHHHhcCCCCccc
Confidence            357899999999999999999987 454 9999999999999984 442   246899999887753  11    13689


Q ss_pred             EEEec
Q 025039          128 VVIEK  132 (259)
Q Consensus       128 ~V~~~  132 (259)
                      .|+..
T Consensus       131 gILfD  135 (347)
T 3tka_A          131 GILLD  135 (347)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            88864

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.20  E-value=0.00064  Score=59.47  Aligned_cols=70  Identities=17%  Similarity=0.184  Sum_probs=57.2

Q ss_pred             CcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC--------CCCceeEEEe
Q 025039           60 SSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF--------SNDCFDVVIE  131 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~fD~V~~  131 (259)
                      .+++|+.||.|.++..+.++|...+.++|+++.+++..+.++     ++..++++|+.++..        ....+|+|+.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~g   77 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIG   77 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeEEEe
Confidence            479999999999999999999867789999999999888775     356778889887531        2357999997


Q ss_pred             cce
Q 025039          132 KAT  134 (259)
Q Consensus       132 ~~~  134 (259)
                      ..+
T Consensus        78 gpP   80 (376)
T 3g7u_A           78 GPP   80 (376)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            654

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.18  E-value=0.00088  Score=55.96  Aligned_cols=117  Identities=11%  Similarity=0.036  Sum_probs=71.2

Q ss_pred             HHHHhhc---ccCCCCCcEEEEcC------CCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc
Q 025039           47 HFRHLVQ---PHIKPNSSVLELGC------GNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD  115 (259)
Q Consensus        47 ~~~~~l~---~~~~~~~~vLDiGc------G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d  115 (259)
                      .+-+.+.   ..++.+.+|||+|+      -+|.  ..+.+.++.  .|+++|+.+-.           ...+ .++++|
T Consensus        95 qlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~-----------sda~-~~IqGD  160 (344)
T 3r24_A           95 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV-----------SDAD-STLIGD  160 (344)
T ss_dssp             HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB-----------CSSS-EEEESC
T ss_pred             HHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcccc-----------cCCC-eEEEcc
Confidence            3445553   22457899999997      4565  334444553  89999998631           1113 448899


Q ss_pred             cCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          116 MLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       116 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      ...... ...||+|++...-..    .|..-.+..+...-.+.+++-+.+.|+|||.|++-.|....
T Consensus       161 ~~~~~~-~~k~DLVISDMAPNt----TG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg  222 (344)
T 3r24_A          161 CATVHT-ANKWDLIISDMYDPR----TKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW  222 (344)
T ss_dssp             GGGEEE-SSCEEEEEECCCCTT----SCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred             cccccc-CCCCCEEEecCCCCc----CCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence            766443 478999998543211    11100111112335567788888999999999997775543

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.06  E-value=0.00038  Score=60.19  Aligned_cols=71  Identities=21%  Similarity=0.320  Sum_probs=56.6

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC---CCCceeEEEecc
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF---SNDCFDVVIEKA  133 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~V~~~~  133 (259)
                      ..+|+|+.||.|.+...+.+.|.  ..+.++|+++.+++..+.++.     +..++++|+.++..   +...+|+|+...
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~~~~~D~l~~gp   76 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcCcCCcCEEEEcC
Confidence            35799999999999999999994  379999999999999998864     34567888877541   112589999876


Q ss_pred             e
Q 025039          134 T  134 (259)
Q Consensus       134 ~  134 (259)
                      +
T Consensus        77 P   77 (343)
T 1g55_A           77 P   77 (343)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.96  E-value=0.001  Score=56.87  Aligned_cols=70  Identities=9%  Similarity=0.027  Sum_probs=54.2

Q ss_pred             HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 025039           47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD  118 (259)
Q Consensus        47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~  118 (259)
                      .+..++.....++..|||..||+|..+....+.|. +.+|+|+++..++.+++++...+. ....++.|+.+
T Consensus       241 l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~  310 (323)
T 1boo_A          241 LPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNI-SEEKITDIYNR  310 (323)
T ss_dssp             HHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCS-CHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhccc-chHHHHHHHHH
Confidence            34455555567899999999999999999999987 999999999999999999876543 23334444444

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.88  E-value=0.0023  Score=54.86  Aligned_cols=71  Identities=14%  Similarity=0.085  Sum_probs=55.9

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC-CCCceeEEEecceee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKATME  136 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~l~  136 (259)
                      +.+++|+.||.|.+...+.+.|...+.++|+++.+++..+.++...    .   ++|+.++.. .-..+|+|+...+-.
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~----~---~~Di~~~~~~~~~~~D~l~~gpPCQ   82 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK----P---EGDITQVNEKTIPDHDILCAGFPCQ   82 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC----C---BSCGGGSCGGGSCCCSEEEEECCCT
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC----C---cCCHHHcCHhhCCCCCEEEECCCCC
Confidence            5689999999999999999999877889999999999999887432    1   577776531 113589999876544

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.74  E-value=0.0015  Score=55.78  Aligned_cols=57  Identities=21%  Similarity=0.233  Sum_probs=47.0

Q ss_pred             HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCH---HHHHHHHHHHhhc
Q 025039           47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSA---VAVEKMQERLLLK  104 (259)
Q Consensus        47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~---~~~~~a~~~~~~~  104 (259)
                      .+..++.....++..|||..||+|..+....+.|. +.+|+|+++   ..++.+++++...
T Consensus       231 l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          231 VIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             HHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHc
Confidence            34455555567899999999999999999999987 999999999   9999999987644

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.66  E-value=0.0073  Score=52.40  Aligned_cols=97  Identities=18%  Similarity=0.226  Sum_probs=65.5

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC----C-cCCCCcee
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----L-PFSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~-~~~~~~fD  127 (259)
                      .+.++.+||.+|||. |..+..+++. |..+|+++|.+++.++.+++.    |.+  .++..+-.+    + ....+.+|
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~~~~~~~gg~D  260 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT--HVINSKTQDPVAAIKEITDGGVN  260 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC--EEecCCccCHHHHHHHhcCCCCc
Confidence            466889999999987 8888888775 554799999999988888654    322  222211111    1 11123799


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+.....                     ...+..+.+.|+++|.++++..
T Consensus       261 ~vid~~g~---------------------~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          261 FALESTGS---------------------PEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             EEEECSCC---------------------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEEECCCC---------------------HHHHHHHHHHHhcCCEEEEeCC
Confidence            99853211                     2467888999999999998654

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.51  E-value=0.021  Score=47.05  Aligned_cols=107  Identities=13%  Similarity=0.134  Sum_probs=71.6

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhc-------CCC-eEEEee-----CCH----------------------HHHHHH---H
Q 025039           57 KPNSSVLELGCGNSRLSEGLYND-------GIT-AITCID-----LSA----------------------VAVEKM---Q   98 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~-------~~~-~v~~vD-----~s~----------------------~~~~~a---~   98 (259)
                      .-+..|+|+||-.|..+..++..       +.. +++++|     +.+                      +.++..   .
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            44679999999999988886652       333 899999     321                      112211   1


Q ss_pred             HHHhhcCC--CCeEEEEcccCC-Cc-----CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC
Q 025039           99 ERLLLKGY--KEVKVLEADMLD-LP-----FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD  170 (259)
Q Consensus        99 ~~~~~~~~--~~v~~~~~d~~~-~~-----~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  170 (259)
                      ++.+..+.  +++.++.+++.+ ++     .+..++|+|+..+-                 ........++.+...|+||
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D-----------------~Y~~t~~~le~~~p~l~~G  210 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD-----------------LYEPTKAVLEAIRPYLTKG  210 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC-----------------CHHHHHHHHHHHGGGEEEE
T ss_pred             hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc-----------------ccchHHHHHHHHHHHhCCC
Confidence            22233443  469999999865 22     23457999986442                 1145567889999999999


Q ss_pred             cEEEEEecCC
Q 025039          171 GLFISVSFGQ  180 (259)
Q Consensus       171 G~l~~~~~~~  180 (259)
                      |++++-++..
T Consensus       211 GvIv~DD~~~  220 (257)
T 3tos_A          211 SIVAFDELDN  220 (257)
T ss_dssp             EEEEESSTTC
T ss_pred             cEEEEcCCCC
Confidence            9999977753

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.37  E-value=0.01  Score=50.08  Aligned_cols=77  Identities=17%  Similarity=0.070  Sum_probs=58.8

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhcCCCe--EEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC---C-CCcee
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYNDGITA--ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF---S-NDCFD  127 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~--v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~-~~~fD  127 (259)
                      .....+.+++|+.||.|.+...+.+.|...  +.++|+++.+++.-+.+.     +...+..+|+.++..   + ...+|
T Consensus        11 ~~~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i~~~~~~D   85 (295)
T 2qrv_A           11 AEKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHIQEWGPFD   85 (295)
T ss_dssp             CCCCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHHHHTCCCS
T ss_pred             cccCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHhcccCCcC
Confidence            334456789999999999999999999863  699999999988877765     245677889887641   1 13689


Q ss_pred             EEEeccee
Q 025039          128 VVIEKATM  135 (259)
Q Consensus       128 ~V~~~~~l  135 (259)
                      +++...+=
T Consensus        86 ll~ggpPC   93 (295)
T 2qrv_A           86 LVIGGSPC   93 (295)
T ss_dssp             EEEECCCC
T ss_pred             EEEecCCC
Confidence            99976543

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.35  E-value=0.0082  Score=53.03  Aligned_cols=61  Identities=11%  Similarity=0.178  Sum_probs=49.0

Q ss_pred             CCCCCcEEEEcCCCCcchHHHH-hcCC--CeEEEeeCCHHHHHHHHHHHhh---cCC-CCeEEEEccc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLY-NDGI--TAITCIDLSAVAVEKMQERLLL---KGY-KEVKVLEADM  116 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~-~~~~--~~v~~vD~s~~~~~~a~~~~~~---~~~-~~v~~~~~d~  116 (259)
                      +.++..|+|+||+.|..+..++ +.+.  .+|+++|+++...+.++++++.   ++. +++.++..-+
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al  291 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA  291 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence            3678999999999999999887 4443  3899999999999999999887   234 5677765443

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.27  E-value=0.013  Score=50.38  Aligned_cols=99  Identities=17%  Similarity=0.185  Sum_probs=66.8

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-----c-CCCCc
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----P-FSNDC  125 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~  125 (259)
                      ..+.++.+||-+|+|. |..+..+++. |..+|+++|.+++.++.+++.    |.+  .++..+-.++     . .....
T Consensus       162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~v~~~t~g~g  235 (352)
T 3fpc_A          162 ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT--DIINYKNGDIVEQILKATDGKG  235 (352)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC--EEECGGGSCHHHHHHHHTTTCC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc--eEEcCCCcCHHHHHHHHcCCCC
Confidence            3467899999999987 8888888876 443899999999988888764    321  2222111111     0 12346


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +|+|+....-                     ...+..+.+.|+|+|.++++...
T Consensus       236 ~D~v~d~~g~---------------------~~~~~~~~~~l~~~G~~v~~G~~  268 (352)
T 3fpc_A          236 VDKVVIAGGD---------------------VHTFAQAVKMIKPGSDIGNVNYL  268 (352)
T ss_dssp             EEEEEECSSC---------------------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             CCEEEECCCC---------------------hHHHHHHHHHHhcCCEEEEeccc
Confidence            9999853211                     14678888999999999987543

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.26  E-value=0.0048  Score=53.00  Aligned_cols=70  Identities=17%  Similarity=0.306  Sum_probs=54.7

Q ss_pred             CcEEEEcCCCCcchHHHHhcCC--CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEEecce
Q 025039           60 SSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKAT  134 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~  134 (259)
                      .+++|+.||.|.+...+.+.|.  ..+.++|+++.+++.-+.++.     ...+..+|+.++.   ++...+|+++...+
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~~~~D~l~ggpP   78 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKKWNVDTILMSPP   78 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhccCCCCEEEecCC
Confidence            4799999999999999999886  368899999999998888763     3456678887754   22236899987643

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.21  E-value=0.008  Score=51.25  Aligned_cols=67  Identities=15%  Similarity=0.202  Sum_probs=53.8

Q ss_pred             cEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC-CCCceeEEEecc
Q 025039           61 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKA  133 (259)
Q Consensus        61 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~  133 (259)
                      +|||+-||.|.+...+.+.|+.-+.++|+++.+++.-+.++.      -.++.+|+.++.. .-..+|+++...
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~~~~~D~l~ggp   69 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEFPKCDGIIGGP   69 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGGSCCCSEEECCC
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhhCCcccEEEecC
Confidence            699999999999999999998777899999999988887752      3567889887642 123689988654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.18  E-value=0.012  Score=50.50  Aligned_cols=94  Identities=14%  Similarity=0.170  Sum_probs=65.4

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      .+.++.+||-+|+|. |..+..+++. |. +|++++.+++.++.+++.    |.+.  ++ .+...+  . ..+|+|+..
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~~--v~-~~~~~~--~-~~~D~vid~  241 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSM----GVKH--FY-TDPKQC--K-EELDFIIST  241 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHT----TCSE--EE-SSGGGC--C-SCEEEEEEC
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhc----CCCe--ec-CCHHHH--h-cCCCEEEEC
Confidence            567899999999987 7888877775 55 999999999888877653    4322  22 332222  2 279999853


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ..-.                     ..+..+.+.|+|+|.++++....
T Consensus       242 ~g~~---------------------~~~~~~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          242 IPTH---------------------YDLKDYLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             CCSC---------------------CCHHHHHTTEEEEEEEEECCCCC
T ss_pred             CCcH---------------------HHHHHHHHHHhcCCEEEEECCCC
Confidence            2210                     24677889999999999875443

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.11  E-value=0.0082  Score=51.38  Aligned_cols=71  Identities=13%  Similarity=0.109  Sum_probs=54.9

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC--CeE-EEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEEe
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI--TAI-TCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIE  131 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v-~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~  131 (259)
                      ...+++|+.||.|.+...+.+.|.  ..+ .++|+++.+++.-+.++..     . ++++|+.++.   ++...+|+++.
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i~~~~~Dil~g   82 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQIESLNCNTWFM   82 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHhccCCCCEEEe
Confidence            356899999999999999999985  356 7999999999999988742     2 4577887764   22236899997


Q ss_pred             cce
Q 025039          132 KAT  134 (259)
Q Consensus       132 ~~~  134 (259)
                      ..+
T Consensus        83 gpP   85 (327)
T 3qv2_A           83 SPP   85 (327)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.03  E-value=0.0092  Score=51.45  Aligned_cols=97  Identities=21%  Similarity=0.219  Sum_probs=64.7

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc------cC-CCc-CCCC
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD------ML-DLP-FSND  124 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d------~~-~~~-~~~~  124 (259)
                      .+.++.+||.+|+|. |..+..+++. |..+|+++|.+++.++.+++.    |.+  .++..+      .. .+. ....
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~~~~i~~~~~~  241 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD--LVLQISKESPQEIARKVEGQLGC  241 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS--EEEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC--EEEcCcccccchHHHHHHHHhCC
Confidence            467889999999986 8888888775 444899999999888887643    432  222211      11 010 0114


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .+|+|+.....                     ...+....++|+|+|.++++..
T Consensus       242 g~D~vid~~g~---------------------~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          242 KPEVTIECTGA---------------------EASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             CCSEEEECSCC---------------------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCEEEECCCC---------------------hHHHHHHHHHhcCCCEEEEEec
Confidence            69999853211                     2356778899999999998754

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.03  E-value=0.047  Score=47.03  Aligned_cols=100  Identities=14%  Similarity=0.136  Sum_probs=67.1

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE-----cccCC-C--cCCCC
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-----ADMLD-L--PFSND  124 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-----~d~~~-~--~~~~~  124 (259)
                      .+.++.+||-+|+|. |..+..+++. |...|+++|.+++.++.+++. ...   .+....     .++.+ +  .....
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~---~~~~~~~~~~~~~~~~~v~~~t~g~  251 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE---VVTHKVERLSAEESAKKIVESFGGI  251 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT---CEEEECCSCCHHHHHHHHHHHTSSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh---cccccccccchHHHHHHHHHHhCCC
Confidence            467899999999977 8888888776 553599999999999998875 211   122221     11111 0  01234


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .+|+|+....-                     ...+..+.++|++||.++++...
T Consensus       252 g~Dvvid~~g~---------------------~~~~~~~~~~l~~~G~iv~~G~~  285 (363)
T 3m6i_A          252 EPAVALECTGV---------------------ESSIAAAIWAVKFGGKVFVIGVG  285 (363)
T ss_dssp             CCSEEEECSCC---------------------HHHHHHHHHHSCTTCEEEECCCC
T ss_pred             CCCEEEECCCC---------------------hHHHHHHHHHhcCCCEEEEEccC
Confidence            79999853211                     24677888999999999987653

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.02  E-value=0.016  Score=48.91  Aligned_cols=121  Identities=17%  Similarity=0.179  Sum_probs=68.3

Q ss_pred             CCCcEEEEcCCCCcchHHHH----hcCCC---eEEEeeCC------------HHHHHHHHHHHhhcCCCC--eEEEEccc
Q 025039           58 PNSSVLELGCGNSRLSEGLY----NDGIT---AITCIDLS------------AVAVEKMQERLLLKGYKE--VKVLEADM  116 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~----~~~~~---~v~~vD~s------------~~~~~~a~~~~~~~~~~~--v~~~~~d~  116 (259)
                      +.-+|||+|=|+|.......    +.++.   +++.+|..            ....+...+........+  .++..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            34679999999998764332    22433   45666631            111222222211111123  35667887


Q ss_pred             CC-Cc-CCCCceeEEEecceeeeeeeCCCC--CCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCccccccccCCCC
Q 025039          117 LD-LP-FSNDCFDVVIEKATMEVLFVNSGD--PWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQ  192 (259)
Q Consensus       117 ~~-~~-~~~~~fD~V~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  192 (259)
                      .+ ++ +....||+|+.    |.+ ....+  .|.         .++++.++++++|||.+.  +++.....+.-+...+
T Consensus       176 ~~~l~~l~~~~~Da~fl----DgF-sP~kNPeLWs---------~e~f~~l~~~~~pgg~la--TYtaag~VRR~L~~aG  239 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFH----DAF-SPYKNPELWT---------LDFLSLIKERIDEKGYWV--SYSSSLSVRKSLLTLG  239 (308)
T ss_dssp             HHHGGGCCSCCEEEEEE----CCS-CTTTSGGGGS---------HHHHHHHHTTEEEEEEEE--ESCCCHHHHHHHHHTT
T ss_pred             HHHHhhhcccceeEEEe----CCC-CcccCcccCC---------HHHHHHHHHHhCCCcEEE--EEeCcHHHHHHHHHCC
Confidence            65 32 34457999984    332 11111  122         589999999999999887  5666555555555566


Q ss_pred             CC
Q 025039          193 FT  194 (259)
Q Consensus       193 ~~  194 (259)
                      |.
T Consensus       240 F~  241 (308)
T 3vyw_A          240 FK  241 (308)
T ss_dssp             CE
T ss_pred             CE
Confidence            54

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.95  E-value=0.028  Score=47.95  Aligned_cols=97  Identities=12%  Similarity=0.152  Sum_probs=65.0

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeE
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDV  128 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~  128 (259)
                      .+.++.+||-.|+|. |..+..+++. |. +|+++|.+++.++.+++.    |.+  .++...-.+..    ...+.+|+
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~~i~~~~~~~~~~~~~~~g~~d~  235 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRL----GAE--VAVNARDTDPAAWLQKEIGGAHG  235 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TCS--EEEETTTSCHHHHHHHHHSSEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHc----CCC--EEEeCCCcCHHHHHHHhCCCCCE
Confidence            456889999999986 8888888775 55 999999999988887653    322  22221111110    01136888


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |+....-                     ...++.+.+.|+|+|.++++...
T Consensus       236 vid~~g~---------------------~~~~~~~~~~l~~~G~iv~~G~~  265 (340)
T 3s2e_A          236 VLVTAVS---------------------PKAFSQAIGMVRRGGTIALNGLP  265 (340)
T ss_dssp             EEESSCC---------------------HHHHHHHHHHEEEEEEEEECSCC
T ss_pred             EEEeCCC---------------------HHHHHHHHHHhccCCEEEEeCCC
Confidence            8753211                     24678888999999999986543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.92  E-value=0.02  Score=49.78  Aligned_cols=97  Identities=15%  Similarity=0.222  Sum_probs=65.1

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc--cCCC-----cCCCCc
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD--MLDL-----PFSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d--~~~~-----~~~~~~  125 (259)
                      .+.++.+||-+|+|. |..+..+++. |..+|+++|.+++.++.+++.    |.+  .++...  -.++     ....+.
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~~~i~~~~~gg  263 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF----GVN--EFVNPKDHDKPIQEVIVDLTDGG  263 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT----TCC--EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc--EEEccccCchhHHHHHHHhcCCC
Confidence            456889999999986 8888877775 554899999999888877642    432  222211  0111     012237


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  178 (259)
                      +|+|+....-                     ...+..+.+.|++| |.++++..
T Consensus       264 ~D~vid~~g~---------------------~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          264 VDYSFECIGN---------------------VSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             BSEEEECSCC---------------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CCEEEECCCC---------------------HHHHHHHHHHhhccCCEEEEEcc
Confidence            9999853211                     24678889999997 99998754

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.90  E-value=0.037  Score=47.98  Aligned_cols=99  Identities=24%  Similarity=0.273  Sum_probs=66.7

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE---cccCC-C-c---CCC
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE---ADMLD-L-P---FSN  123 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~~-~-~---~~~  123 (259)
                      ..+.++.+||-.|+|. |..+..+++. |..+|+++|.+++..+.+++.    |.+  .++.   .|+.+ + .   ...
T Consensus       178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~i~~~~~~~~  251 (370)
T 4ej6_A          178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GAT--ATVDPSAGDVVEAIAGPVGLVP  251 (370)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS--EEECTTSSCHHHHHHSTTSSST
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC--EEECCCCcCHHHHHHhhhhccC
Confidence            3467899999999976 7788888776 444899999999988887764    432  1221   11111 0 0   123


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +.+|+|+.....                     ...+..+.++|++||.++++...
T Consensus       252 gg~Dvvid~~G~---------------------~~~~~~~~~~l~~~G~vv~~G~~  286 (370)
T 4ej6_A          252 GGVDVVIECAGV---------------------AETVKQSTRLAKAGGTVVILGVL  286 (370)
T ss_dssp             TCEEEEEECSCC---------------------HHHHHHHHHHEEEEEEEEECSCC
T ss_pred             CCCCEEEECCCC---------------------HHHHHHHHHHhccCCEEEEEecc
Confidence            479999853211                     24678888999999999987543

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.89  E-value=0.0028  Score=54.97  Aligned_cols=92  Identities=11%  Similarity=0.199  Sum_probs=62.5

Q ss_pred             CCCcEEEEc-CCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc--ccCC-C-cCCCCceeEEE
Q 025039           58 PNSSVLELG-CGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA--DMLD-L-PFSNDCFDVVI  130 (259)
Q Consensus        58 ~~~~vLDiG-cG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~--d~~~-~-~~~~~~fD~V~  130 (259)
                      ++.+||-.| +|. |..+..+++. +..+|++++.+++.++.+++.    |.+  .++..  ++.+ + ....+.+|+|+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l----Gad--~vi~~~~~~~~~v~~~~~~g~Dvvi  244 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL----GAH--HVIDHSKPLAAEVAALGLGAPAFVF  244 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT----TCS--EEECTTSCHHHHHHTTCSCCEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc----CCC--EEEeCCCCHHHHHHHhcCCCceEEE
Confidence            678999999 665 8899999886 444999999999888887652    432  22211  1100 0 12235799988


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ....                     ....++.+.++|+++|.++++
T Consensus       245 d~~g---------------------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          245 STTH---------------------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             ECSC---------------------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             ECCC---------------------chhhHHHHHHHhcCCCEEEEE
Confidence            5321                     124678888999999999986

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.87  E-value=0.017  Score=49.67  Aligned_cols=96  Identities=18%  Similarity=0.199  Sum_probs=63.8

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEccc-CCCc------CC---
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM-LDLP------FS---  122 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~------~~---  122 (259)
                      .+.++.+||-+|+|. |..+..+++. |. +|+++|.+++.++.+++.    |.+  .++..+- .+..      ..   
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~~~~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----GAD--VTLVVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TCS--EEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh----CCC--EEEcCcccccHHHHHHHHhcccc
Confidence            467889999999876 7777777764 55 799999999988887643    432  2222110 1110      11   


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ...+|+|+.....                     ...++.+.++|+|+|.++.+..
T Consensus       238 g~g~D~vid~~g~---------------------~~~~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          238 GDLPNVTIDCSGN---------------------EKCITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             SSCCSEEEECSCC---------------------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCCCEEEECCCC---------------------HHHHHHHHHHHhcCCEEEEEec
Confidence            2469999853211                     2357778899999999998654

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.85  E-value=0.015  Score=50.87  Aligned_cols=110  Identities=14%  Similarity=0.170  Sum_probs=65.5

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-c------CCCCc
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-P------FSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~------~~~~~  125 (259)
                      .+.++.+||.+|||. |..+..+++. |..+|+++|.+++.++.+++    .|.   .++...-.+. .      .....
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa---~~i~~~~~~~~~~~~~~~~~g~g  254 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF---ETIDLRNSAPLRDQIDQILGKPE  254 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC---EEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC---cEEcCCCcchHHHHHHHHhCCCC
Confidence            456889999999987 8888888775 54489999999998887764    243   2332111111 0      11236


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+|+....-..........+       ......+..+.++|++||.++++..
T Consensus       255 ~Dvvid~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          255 VDCGVDAVGFEAHGLGDEANT-------ETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             EEEEEECSCTTCBCSGGGTTS-------BCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             CCEEEECCCCccccccccccc-------cccHHHHHHHHHHHhcCCEEEEecc
Confidence            999985422110000000000       0012367888899999999987643

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.84  E-value=0.029  Score=49.05  Aligned_cols=111  Identities=13%  Similarity=0.194  Sum_probs=66.5

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-----Cc--CCCCc
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-----LP--FSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----~~--~~~~~  125 (259)
                      .+.++.+||.+|||. |..+..+++. |..+|+++|.+++.++.+++.    |.   ..+...-.+     +.  .....
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----Ga---~~i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF---EIADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC---EEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----CC---cEEccCCcchHHHHHHHHhCCCC
Confidence            466889999999987 8888888875 544799999999988888653    43   222211101     10  12246


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+|+...........    +.  ..+.......++.+.++|++||.++++..
T Consensus       255 ~Dvvid~~G~~~~~~~----~~--~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          255 VDCAVDAVGFEARGHG----HE--GAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             EEEEEECCCTTCBCSS----TT--GGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCEEEECCCCcccccc----cc--cccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            9999864221100000    00  00000112467888899999999987653

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.82  E-value=0.022  Score=49.28  Aligned_cols=97  Identities=16%  Similarity=0.175  Sum_probs=65.3

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc------CCCCc
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDC  125 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~  125 (259)
                      ..++++.+||-+|+|. |..+..+++. |. +|+++|.+++.++.+++.    |.+  .++..+-.++.      .....
T Consensus       185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~v~~~~~g~g  257 (363)
T 3uog_A          185 GHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFAL----GAD--HGINRLEEDWVERVYALTGDRG  257 (363)
T ss_dssp             TCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHHTTCC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHc----CCC--EEEcCCcccHHHHHHHHhCCCC
Confidence            3456889999999887 7777777775 55 999999999988887653    432  22222111110      12337


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +|+|+....                      ...+..+.+.|+|+|.++++...
T Consensus       258 ~D~vid~~g----------------------~~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          258 ADHILEIAG----------------------GAGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             EEEEEEETT----------------------SSCHHHHHHHEEEEEEEEEECCC
T ss_pred             ceEEEECCC----------------------hHHHHHHHHHhhcCCEEEEEecC
Confidence            999985321                      12467788899999999987643

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=95.71  E-value=0.12  Score=43.72  Aligned_cols=105  Identities=10%  Similarity=0.047  Sum_probs=75.0

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCC---CCeEEEEcccCCCc---------CCCCc
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY---KEVKVLEADMLDLP---------FSNDC  125 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~---------~~~~~  125 (259)
                      ...|+++|||-=.....+.. ... +++-+| .|.+++..++.+...+.   .+..++..|+.+ .         +....
T Consensus       103 ~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~  179 (310)
T 2uyo_A          103 IRQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSA  179 (310)
T ss_dssp             CCEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTS
T ss_pred             CCeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCC
Confidence            35799999997665544432 222 788899 59999998888864321   347788888876 2         11123


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .=++++-++++++             ..+....+++.+...+.||+.+++....
T Consensus       180 Pt~~i~Egvl~Yl-------------~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          180 RTAWLAEGLLMYL-------------PATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             CEEEEECSCGGGS-------------CHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CEEEEEechHhhC-------------CHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            4467778888887             4568889999999999999998886544

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.63  E-value=0.03  Score=49.17  Aligned_cols=103  Identities=16%  Similarity=0.158  Sum_probs=63.6

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc------CCCCce
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDCF  126 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~f  126 (259)
                      .+.++.+||-+|+|. |..+..+++. |..+|+++|.+++.++.+++.    |.+  .++..+-.++.      .....+
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~i~~~t~g~g~  283 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD--HVIDPTKENFVEAVLDYTNGLGA  283 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS--EEECTTTSCHHHHHHHHTTTCCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC--EEEcCCCCCHHHHHHHHhCCCCC
Confidence            467889999999976 7788888776 444899999999988888754    321  22221111110      123469


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |+|+....-                .......+++.+.+.++++|.++++...
T Consensus       284 D~vid~~g~----------------~~~~~~~~~~~l~~~~~~~G~iv~~G~~  320 (404)
T 3ip1_A          284 KLFLEATGV----------------PQLVWPQIEEVIWRARGINATVAIVARA  320 (404)
T ss_dssp             SEEEECSSC----------------HHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred             CEEEECCCC----------------cHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence            999853211                0012233334444556999999987543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.62  E-value=0.01  Score=50.16  Aligned_cols=89  Identities=15%  Similarity=0.298  Sum_probs=59.7

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      .++++.+||-.|+|. |..+..+++. |. +|++++ +++.++.+++.    |.  -.++ .|...+   ...+|+|+..
T Consensus       139 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l----Ga--~~v~-~d~~~v---~~g~Dvv~d~  206 (315)
T 3goh_A          139 PLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR----GV--RHLY-REPSQV---TQKYFAIFDA  206 (315)
T ss_dssp             CCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH----TE--EEEE-SSGGGC---CSCEEEEECC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc----CC--CEEE-cCHHHh---CCCccEEEEC
Confidence            456889999999975 8888877775 66 999999 88888887663    32  1222 232222   4679998842


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ..                    .  ..+....++|+++|.++.+.
T Consensus       207 ~g--------------------~--~~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          207 VN--------------------S--QNAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             -----------------------------TTGGGEEEEEEEEEEC
T ss_pred             CC--------------------c--hhHHHHHHHhcCCCEEEEEe
Confidence            11                    0  12356789999999999874

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.62  E-value=0.014  Score=50.06  Aligned_cols=98  Identities=14%  Similarity=0.260  Sum_probs=66.5

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc--cCC-C-c-CCCCcee
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD--MLD-L-P-FSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d--~~~-~-~-~~~~~fD  127 (259)
                      .+.++.+||-+|+|. |..+..+++. |..+|+++|.+++.++.+++.    |.+.  ++..+  ..+ + . .....+|
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l----Ga~~--~i~~~~~~~~~v~~~t~g~g~d  241 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV----GADA--AVKSGAGAADAIRELTGGQGAT  241 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT----TCSE--EEECSTTHHHHHHHHHGGGCEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCCE--EEcCCCcHHHHHHHHhCCCCCe
Confidence            467889999999987 8888888875 344999999999988888653    4322  22211  111 0 0 1223799


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +|+....-                     ...++.+.+.|+++|.++++...
T Consensus       242 ~v~d~~G~---------------------~~~~~~~~~~l~~~G~iv~~G~~  272 (345)
T 3jv7_A          242 AVFDFVGA---------------------QSTIDTAQQVVAVDGHISVVGIH  272 (345)
T ss_dssp             EEEESSCC---------------------HHHHHHHHHHEEEEEEEEECSCC
T ss_pred             EEEECCCC---------------------HHHHHHHHHHHhcCCEEEEECCC
Confidence            98853211                     24678889999999999987543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.57  E-value=0.013  Score=50.80  Aligned_cols=94  Identities=20%  Similarity=0.311  Sum_probs=62.8

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc---ccCCCcCCCCceeEE
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DMLDLPFSNDCFDVV  129 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~~~~~~~fD~V  129 (259)
                      .+.++.+||.+|+|. |..+..+++. |. +|++++.+++.++.+++.    |.+  .++..   +..+ ... ..+|+|
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~-~~~-~g~Dvv  261 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----GAD--EVVNSRNADEMA-AHL-KSFDFI  261 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS--EEEETTCHHHHH-TTT-TCEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCc--EEeccccHHHHH-Hhh-cCCCEE
Confidence            467889999999986 7777777765 55 899999999888888753    332  22211   1111 111 479998


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +....-                     ...++.+.+.|+++|.++.+..
T Consensus       262 id~~g~---------------------~~~~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          262 LNTVAA---------------------PHNLDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             EECCSS---------------------CCCHHHHHTTEEEEEEEEECCC
T ss_pred             EECCCC---------------------HHHHHHHHHHhccCCEEEEecc
Confidence            853221                     0235677889999999987644

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.57  E-value=0.038  Score=47.83  Aligned_cols=97  Identities=15%  Similarity=0.188  Sum_probs=64.5

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc-----cCC-C-cCCCCc
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-----MLD-L-PFSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-----~~~-~-~~~~~~  125 (259)
                      .+.++.+||-+|+|. |..+..+++. |..+|+++|.+++.++.+++.    |.+  .++..+     +.+ + ....+.
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~~~i~~~t~gg  261 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GAT--ECLNPKDYDKPIYEVICEKTNGG  261 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCS--EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc--EEEecccccchHHHHHHHHhCCC
Confidence            456889999999986 7778777775 544799999999888887643    432  222111     111 0 011237


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  178 (259)
                      +|+|+.....                     ...+..+.++|+++ |.++++..
T Consensus       262 ~Dvvid~~g~---------------------~~~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          262 VDYAVECAGR---------------------IETMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             BSEEEECSCC---------------------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             CCEEEECCCC---------------------HHHHHHHHHHHhcCCCEEEEEcc
Confidence            9999853211                     24678888999999 99987654

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.49  E-value=0.0063  Score=52.22  Aligned_cols=94  Identities=18%  Similarity=0.206  Sum_probs=63.3

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc---CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE----cccC-CCcCCCCc
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND---GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE----ADML-DLPFSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~----~d~~-~~~~~~~~  125 (259)
                      .+ ++.+||-+|+|. |..+..+++.   |. +|+++|.+++.++.+++.    |.+  .++.    .+.. .+. ....
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~~-~g~g  238 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL----GAD--YVSEMKDAESLINKLT-DGLG  238 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH----TCS--EEECHHHHHHHHHHHH-TTCC
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh----CCC--EEeccccchHHHHHhh-cCCC
Confidence            45 889999999976 7777777765   55 899999999988888753    322  2221    1111 111 1236


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+|+.....                     ...++.+.++|+|+|.++.+..
T Consensus       239 ~D~vid~~g~---------------------~~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          239 ASIAIDLVGT---------------------EETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             EEEEEESSCC---------------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             ccEEEECCCC---------------------hHHHHHHHHHhhcCCEEEEeCC
Confidence            9999864221                     2367788899999999988654

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.40  E-value=0.052  Score=46.90  Aligned_cols=97  Identities=15%  Similarity=0.236  Sum_probs=64.3

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc-c----cCC-C-cCCCCc
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-D----MLD-L-PFSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d----~~~-~-~~~~~~  125 (259)
                      .+.++.+||-+|+|. |..+..+++. |..+|+++|.+++.++.+++.    |.+  .++.. +    +.+ + ....+.
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~v~~~~~~g  260 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT--ECINPQDFSKPIQEVLIEMTDGG  260 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS--EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc--eEeccccccccHHHHHHHHhCCC
Confidence            456889999999876 7777777775 544799999999888888653    332  22211 1    111 0 011237


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  178 (259)
                      +|+|+.....                     ...+..+.++|+++ |.++++..
T Consensus       261 ~D~vid~~g~---------------------~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          261 VDYSFECIGN---------------------VKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             BSEEEECSCC---------------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CCEEEECCCc---------------------HHHHHHHHHhhccCCcEEEEEec
Confidence            9998853211                     24678888999999 99998654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.37  E-value=0.17  Score=37.14  Aligned_cols=95  Identities=20%  Similarity=0.262  Sum_probs=60.3

Q ss_pred             CCcEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEec
Q 025039           59 NSSVLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEK  132 (259)
Q Consensus        59 ~~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~  132 (259)
                      ..+|+-+|||. |. ++..|.+.|. +|+++|.+++.++.+++.       .+.++.+|..+..    ..-..+|+|++.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~-------g~~~i~gd~~~~~~l~~a~i~~ad~vi~~   78 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRER-------GVRAVLGNAANEEIMQLAHLECAKWLILT   78 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-------TCEEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHc-------CCCEEECCCCCHHHHHhcCcccCCEEEEE
Confidence            45799999986 54 3445555677 899999999988877652       4677888876532    123468888753


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ..                 +... ...+-...+.+.|+..++.....
T Consensus        79 ~~-----------------~~~~-n~~~~~~a~~~~~~~~iiar~~~  107 (140)
T 3fwz_A           79 IP-----------------NGYE-AGEIVASARAKNPDIEIIARAHY  107 (140)
T ss_dssp             CS-----------------CHHH-HHHHHHHHHHHCSSSEEEEEESS
T ss_pred             CC-----------------ChHH-HHHHHHHHHHHCCCCeEEEEECC
Confidence            21                 1112 22233355667788887765443

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.22  E-value=0.044  Score=46.63  Aligned_cols=95  Identities=20%  Similarity=0.259  Sum_probs=62.4

Q ss_pred             cCCCCCcEEEEcC-CC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc------CCCCc
Q 025039           55 HIKPNSSVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~  125 (259)
                      .+.++.+||-.|+ |. |..+..+++. |. +|++++.+++.++.+++.    +. . .++..+-.+..      .....
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga-~-~~~~~~~~~~~~~~~~~~~~~g  217 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEY----GA-E-YLINASKEDILRQVLKFTNGKG  217 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT----TC-S-EEEETTTSCHHHHHHHHTTTSC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC-c-EEEeCCCchHHHHHHHHhCCCC
Confidence            4568899999994 43 7777777665 55 999999999888877653    32 1 22221111110      12346


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+|+....-                      ..+..+.+.|+++|.++.+..
T Consensus       218 ~D~vid~~g~----------------------~~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          218 VDASFDSVGK----------------------DTFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             EEEEEECCGG----------------------GGHHHHHHHEEEEEEEEECCC
T ss_pred             ceEEEECCCh----------------------HHHHHHHHHhccCCEEEEEcC
Confidence            9999864211                      356778889999999998754

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.20  E-value=0.04  Score=46.70  Aligned_cols=96  Identities=16%  Similarity=0.151  Sum_probs=63.5

Q ss_pred             cCCCCCcEEEEc-CCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc------CCCCc
Q 025039           55 HIKPNSSVLELG-CGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiG-cG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~  125 (259)
                      .++++.+||-.| +|. |..+..+++. |. +|++++.+++.++.+++.    +. . .++...-.+..      .....
T Consensus       137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga-~-~~~~~~~~~~~~~~~~~~~~~g  209 (325)
T 3jyn_A          137 QVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKAL----GA-W-ETIDYSHEDVAKRVLELTDGKK  209 (325)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TC-S-EEEETTTSCHHHHHHHHTTTCC
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC-C-EEEeCCCccHHHHHHHHhCCCC
Confidence            456889999999 444 7777777664 66 999999999988888753    32 1 22221111110      12347


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +|+|+....-                      ..+..+.+.|+++|.++++...
T Consensus       210 ~Dvvid~~g~----------------------~~~~~~~~~l~~~G~iv~~g~~  241 (325)
T 3jyn_A          210 CPVVYDGVGQ----------------------DTWLTSLDSVAPRGLVVSFGNA  241 (325)
T ss_dssp             EEEEEESSCG----------------------GGHHHHHTTEEEEEEEEECCCT
T ss_pred             ceEEEECCCh----------------------HHHHHHHHHhcCCCEEEEEecC
Confidence            9998864221                      3567788999999999987543

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.18  E-value=0.15  Score=43.41  Aligned_cols=99  Identities=18%  Similarity=0.201  Sum_probs=64.1

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc------CCCCc
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDC  125 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~  125 (259)
                      ..+.++.+||-.|+|. |..+..+++. |...++++|.+++.++.+++.    |.+  .++...-.+..      .....
T Consensus       156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l----Ga~--~~i~~~~~~~~~~~~~~~~~~g  229 (346)
T 4a2c_A          156 AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF----GAM--QTFNSSEMSAPQMQSVLRELRF  229 (346)
T ss_dssp             TTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS--EEEETTTSCHHHHHHHHGGGCS
T ss_pred             hccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc----CCe--EEEeCCCCCHHHHHHhhcccCC
Confidence            3456889999999987 6666666665 554788999999988887753    422  22221111100      12345


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +|+|+....                     ....++...++|++||.+++....
T Consensus       230 ~d~v~d~~G---------------------~~~~~~~~~~~l~~~G~~v~~g~~  262 (346)
T 4a2c_A          230 NQLILETAG---------------------VPQTVELAVEIAGPHAQLALVGTL  262 (346)
T ss_dssp             SEEEEECSC---------------------SHHHHHHHHHHCCTTCEEEECCCC
T ss_pred             ccccccccc---------------------ccchhhhhhheecCCeEEEEEecc
Confidence            788775321                     125677888999999999986543

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=95.15  E-value=0.02  Score=51.54  Aligned_cols=59  Identities=14%  Similarity=0.177  Sum_probs=46.8

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL  119 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  119 (259)
                      ..+++|+.||.|.+...+.+.|...+.++|+++.+++.-+.++...  +...++++|+.++
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~--p~~~~~~~DI~~i  146 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD--PATHHFNEDIRDI  146 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC--TTTCEEESCTHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC--CCcceeccchhhh
Confidence            3579999999999999999999867899999999998888776321  2345667787654

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.15  E-value=0.042  Score=47.29  Aligned_cols=93  Identities=19%  Similarity=0.289  Sum_probs=61.0

Q ss_pred             CCCC------CcEEEEcCCC-Ccch-HHHH-hc-CCCeEEEeeCCHH---HHHHHHHHHhhcCCCCeEEEEcccCCCcCC
Q 025039           56 IKPN------SSVLELGCGN-SRLS-EGLY-ND-GITAITCIDLSAV---AVEKMQERLLLKGYKEVKVLEADMLDLPFS  122 (259)
Q Consensus        56 ~~~~------~~vLDiGcG~-G~~~-~~l~-~~-~~~~v~~vD~s~~---~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~  122 (259)
                      +.++      .+||-+|+|. |..+ ..++ +. |..+|++++.+++   .++.+++.    |.   ...  |..+..+.
T Consensus       164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l----Ga---~~v--~~~~~~~~  234 (357)
T 2b5w_A          164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL----DA---TYV--DSRQTPVE  234 (357)
T ss_dssp             HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT----TC---EEE--ETTTSCGG
T ss_pred             CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc----CC---ccc--CCCccCHH
Confidence            4577      8999999976 7777 7777 54 5524999999887   77777642    32   211  22211100


Q ss_pred             -----CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          123 -----NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       123 -----~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                           .+.+|+|+....-                     ...++.+.++|+++|.++.+..
T Consensus       235 ~i~~~~gg~Dvvid~~g~---------------------~~~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          235 DVPDVYEQMDFIYEATGF---------------------PKHAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             GHHHHSCCEEEEEECSCC---------------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             HHHHhCCCCCEEEECCCC---------------------hHHHHHHHHHHhcCCEEEEEeC
Confidence                 2368998853211                     2357788899999999998654

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.11  E-value=0.071  Score=45.63  Aligned_cols=96  Identities=21%  Similarity=0.200  Sum_probs=62.8

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC----c--CCCCce
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----P--FSNDCF  126 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~--~~~~~f  126 (259)
                      .+ ++.+||-+|+|. |..+..+++. |..+|++++.+++.++.+++.    +.+  .++..+-.++    .  .....+
T Consensus       165 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~--~~~~~~~~~~~~~v~~~~~g~g~  237 (348)
T 2d8a_A          165 PI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GAD--YVINPFEEDVVKEVMDITDGNGV  237 (348)
T ss_dssp             CC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCS--EEECTTTSCHHHHHHHHTTTSCE
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC--EEECCCCcCHHHHHHHHcCCCCC
Confidence            45 789999999975 7777777765 443899999999888887653    321  1221111111    0  112369


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |+|+.....                     ...++.+.+.|+++|.++.+..
T Consensus       238 D~vid~~g~---------------------~~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          238 DVFLEFSGA---------------------PKALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             EEEEECSCC---------------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCC---------------------HHHHHHHHHHHhcCCEEEEEcc
Confidence            999854221                     2467788899999999988654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.09  E-value=0.042  Score=42.84  Aligned_cols=93  Identities=20%  Similarity=0.192  Sum_probs=59.2

Q ss_pred             cCCCCCcEEEEcCC--CCcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--------CCC
Q 025039           55 HIKPNSSVLELGCG--NSRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSN  123 (259)
Q Consensus        55 ~~~~~~~vLDiGcG--~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~  123 (259)
                      .+.++.+||..|++  .|..+..++. .|. +|+++|.+++..+.+++    .+. . ...  |..+..        ...
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~-~-~~~--d~~~~~~~~~~~~~~~~  105 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGV-E-YVG--DSRSVDFADEILELTDG  105 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCC-S-EEE--ETTCSTHHHHHHHHTTT
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCC-C-EEe--eCCcHHHHHHHHHHhCC
Confidence            45688999999953  3655555544 476 89999999887776643    232 1 112  222110        122


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ..+|+++.+..                      ...+..+.+.|+|+|.++.+..
T Consensus       106 ~~~D~vi~~~g----------------------~~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          106 YGVDVVLNSLA----------------------GEAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             CCEEEEEECCC----------------------THHHHHHHHTEEEEEEEEECSC
T ss_pred             CCCeEEEECCc----------------------hHHHHHHHHHhccCCEEEEEcC
Confidence            36999885421                      1357788899999999987643

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.08  E-value=0.036  Score=48.23  Aligned_cols=96  Identities=14%  Similarity=0.087  Sum_probs=63.9

Q ss_pred             CCCCCcEEEEcCCC-CcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc------cCC-Cc--CCCC
Q 025039           56 IKPNSSVLELGCGN-SRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD------MLD-LP--FSND  124 (259)
Q Consensus        56 ~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d------~~~-~~--~~~~  124 (259)
                      +.++.+||-+|+|. |..+..+++... .+|++++.+++.++.+++.    |.+  .++..+      +.+ +.  ....
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~~v~~~~~g~  266 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD--LTLNRRETSVEERRKAIMDITHGR  266 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS--EEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc----CCc--EEEeccccCcchHHHHHHHHhCCC
Confidence            66789999999876 778887777643 3999999999988887642    432  222211      111 10  1223


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .+|+|+.....                     ...+..+.++|+++|.++.+..
T Consensus       267 g~Dvvid~~g~---------------------~~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          267 GADFILEATGD---------------------SRALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             CEEEEEECSSC---------------------TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CCcEEEECCCC---------------------HHHHHHHHHHHhcCCEEEEEec
Confidence            69999854211                     1357778899999999998654

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=95.01  E-value=0.051  Score=46.38  Aligned_cols=99  Identities=16%  Similarity=0.185  Sum_probs=61.5

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCC-Cc--CCCCceeE
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-LP--FSNDCFDV  128 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~--~~~~~fD~  128 (259)
                      .+.++.+||-+|+|. |.++..+++ .+..+|+++|.+++.++.+++.    +.+. +.....|..+ +.  .....+|.
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----Ga~~~i~~~~~~~~~~v~~~t~g~g~d~  235 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----GADVTINSGDVNPVDEIKKITGGLGVQS  235 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----TCSEEEEC-CCCHHHHHHHHTTSSCEEE
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----CCeEEEeCCCCCHHHHhhhhcCCCCceE
Confidence            457889999999987 455555554 4444999999999888777654    3221 1111222211 00  12335777


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ++....-                     ...+....+.|+++|.++++..
T Consensus       236 ~~~~~~~---------------------~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          236 AIVCAVA---------------------RIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             EEECCSC---------------------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEEeccC---------------------cchhheeheeecCCceEEEEec
Confidence            6642211                     2567888899999999988654

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.93  E-value=0.048  Score=46.64  Aligned_cols=94  Identities=19%  Similarity=0.312  Sum_probs=61.8

Q ss_pred             cCCCCCcEEEEcC-CC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc------CCCCc
Q 025039           55 HIKPNSSVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~  125 (259)
                      .+.++.+||-.|+ |. |..+..+++. |. +|++++.+++.++.+++.    +.+  .++..+ .++.      .....
T Consensus       156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga~--~v~~~~-~~~~~~v~~~~~~~g  227 (342)
T 4eye_A          156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV----GAD--IVLPLE-EGWAKAVREATGGAG  227 (342)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS--EEEESS-TTHHHHHHHHTTTSC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc--EEecCc-hhHHHHHHHHhCCCC
Confidence            4568899999998 43 7777777765 55 999999999888877763    322  222222 1111      12336


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+|+....-                      ..+..+.+.|+++|.++++..
T Consensus       228 ~Dvvid~~g~----------------------~~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          228 VDMVVDPIGG----------------------PAFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             EEEEEESCC------------------------CHHHHHHTEEEEEEEEEC--
T ss_pred             ceEEEECCch----------------------hHHHHHHHhhcCCCEEEEEEc
Confidence            9999864221                      246778899999999998654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=94.92  E-value=0.064  Score=46.40  Aligned_cols=97  Identities=16%  Similarity=0.239  Sum_probs=63.9

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEccc--CCCc-----CCCCc
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM--LDLP-----FSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~-----~~~~~  125 (259)
                      .+.++.+||-+|+|. |..+..+++. |..+|+++|.+++.++.+++.    |.+  .++...-  .++.     ...+.
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~~~~~~~~g  262 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----GAT--DFVNPNDHSEPISQVLSKMTNGG  262 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCC--EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc--eEEeccccchhHHHHHHHHhCCC
Confidence            456889999999876 7777777775 443799999999888887643    332  2221110  0110     11236


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  178 (259)
                      +|+|+.....                     ...+..+.++|+++ |.++++..
T Consensus       263 ~D~vid~~g~---------------------~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          263 VDFSLECVGN---------------------VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             BSEEEECSCC---------------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CCEEEECCCC---------------------HHHHHHHHHHhhcCCcEEEEEcC
Confidence            9998853211                     24678888999999 99988654

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.91  E-value=0.064  Score=46.45  Aligned_cols=97  Identities=18%  Similarity=0.186  Sum_probs=64.1

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc-----cCC-C-cCCCCc
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-----MLD-L-PFSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-----~~~-~-~~~~~~  125 (259)
                      .+.++.+||-+|+|. |..+..+++. |..+|+++|.+++.++.+++.    |.+  .++...     +.+ + ....+.
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~~~v~~~~~~g  265 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT--DCLNPRELDKPVQDVITELTAGG  265 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS--EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCc--EEEccccccchHHHHHHHHhCCC
Confidence            456889999999876 7788887776 443799999999888877643    332  222111     111 0 011237


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  178 (259)
                      +|+|+....-                     ...++.+.++|+++ |.++++..
T Consensus       266 ~Dvvid~~G~---------------------~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          266 VDYSLDCAGT---------------------AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             BSEEEESSCC---------------------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             ccEEEECCCC---------------------HHHHHHHHHHhhcCCCEEEEECC
Confidence            9998853211                     24678889999999 99987654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.90  E-value=0.064  Score=45.59  Aligned_cols=96  Identities=17%  Similarity=0.187  Sum_probs=62.2

Q ss_pred             cCCCCCcEEEEcC-C-CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-----cCCCCce
Q 025039           55 HIKPNSSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSNDCF  126 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~f  126 (259)
                      .+.++.+||-.|+ | .|..+..+++. |. +|++++.+++.++.+.+.+   +. . .++...-.+.     ....+.+
T Consensus       146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~---g~-~-~~~~~~~~~~~~~~~~~~~~~~  219 (336)
T 4b7c_A          146 QPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEEL---GF-D-GAIDYKNEDLAAGLKRECPKGI  219 (336)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTT---CC-S-EEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CC-C-EEEECCCHHHHHHHHHhcCCCc
Confidence            4678899999998 3 37777776654 66 9999999998887773332   32 1 1221111111     0112469


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |+|+....                      ...+..+.+.|+++|.++++..
T Consensus       220 d~vi~~~g----------------------~~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          220 DVFFDNVG----------------------GEILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             EEEEESSC----------------------HHHHHHHHTTEEEEEEEEECCC
T ss_pred             eEEEECCC----------------------cchHHHHHHHHhhCCEEEEEee
Confidence            99885321                      1367888899999999998643

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.89  E-value=0.078  Score=45.20  Aligned_cols=93  Identities=16%  Similarity=0.235  Sum_probs=62.2

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-------CCCCc
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-------FSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~  125 (259)
                      .+.++.+||-+|+|. |..+..+++. |. +|++++.+++.++.+++    .+.+  .++  |..+..       .. +.
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~--~~~--d~~~~~~~~~~~~~~-~~  230 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD--LVV--NPLKEDAAKFMKEKV-GG  230 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS--EEE--CTTTSCHHHHHHHHH-SS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCC--EEe--cCCCccHHHHHHHHh-CC
Confidence            467889999999965 6666666654 55 99999999998887764    2322  122  222111       01 36


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+|+.....                     ...++.+.++|+++|.++.+..
T Consensus       231 ~d~vid~~g~---------------------~~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          231 VHAAVVTAVS---------------------KPAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             EEEEEESSCC---------------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCEEEECCCC---------------------HHHHHHHHHHhhcCCEEEEecc
Confidence            8998853221                     2467788899999999987654

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.81  E-value=0.082  Score=45.70  Aligned_cols=97  Identities=16%  Similarity=0.205  Sum_probs=63.8

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc-----cCC-C-cCCCCc
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-----MLD-L-PFSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-----~~~-~-~~~~~~  125 (259)
                      .+.++.+||-+|+|. |..+..+++. |..+|+++|.+++.++.+++.    |.+  .++..+     +.+ + ....+.
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~~~~~~~~g  261 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GAT--ECVNPQDYKKPIQEVLTEMSNGG  261 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS--EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCc--eEecccccchhHHHHHHHHhCCC
Confidence            456889999999876 7777777775 443799999999888887642    332  222111     111 0 011237


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  178 (259)
                      +|+|+....-                     ...+..+.++|+++ |.++++..
T Consensus       262 ~D~vid~~g~---------------------~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          262 VDFSFEVIGR---------------------LDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             BSEEEECSCC---------------------HHHHHHHHHHBCTTTCEEEECSC
T ss_pred             CcEEEECCCC---------------------HHHHHHHHHHhhcCCcEEEEecc
Confidence            9998853211                     24677888999999 99988654

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.76  E-value=0.05  Score=46.45  Aligned_cols=95  Identities=17%  Similarity=0.250  Sum_probs=60.9

Q ss_pred             cCCCCCcEEEEcCCC--CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc------CCCCc
Q 025039           55 HIKPNSSVLELGCGN--SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~--G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~  125 (259)
                      .++++.+||-.|+|.  |..+..+++. |. +|++++.+++.++.+++.    +. . .++...-.+..      .....
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----ga-~-~~~~~~~~~~~~~~~~~~~~~g  213 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRL----GA-A-YVIDTSTAPLYETVMELTNGIG  213 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TC-S-EEEETTTSCHHHHHHHHTTTSC
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhC----CC-c-EEEeCCcccHHHHHHHHhCCCC
Confidence            457889999999984  6777766664 66 999999999888888763    32 2 22221111110      12347


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+|+....-                  .    .+....+.|+++|.++++..
T Consensus       214 ~Dvvid~~g~------------------~----~~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          214 ADAAIDSIGG------------------P----DGNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             EEEEEESSCH------------------H----HHHHHHHTEEEEEEEEECCC
T ss_pred             CcEEEECCCC------------------h----hHHHHHHHhcCCCEEEEEee
Confidence            9999864221                  1    12334479999999998754

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.73  E-value=0.021  Score=48.06  Aligned_cols=70  Identities=16%  Similarity=0.258  Sum_probs=43.1

Q ss_pred             CeEEEEcccCC-Cc-CCCCceeEEEecceeeee--eeCCCCCCCC---CchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          108 EVKVLEADMLD-LP-FSNDCFDVVIEKATMEVL--FVNSGDPWNP---QPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       108 ~v~~~~~d~~~-~~-~~~~~fD~V~~~~~l~~~--~~~~~~~~~~---~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .+.++++|..+ +. +++++||+|++++++...  +......+..   ..........++.++.++|+|||.+++..
T Consensus        21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~   97 (297)
T 2zig_A           21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV   97 (297)
T ss_dssp             CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            46889999876 22 456899999999887432  1000000000   00011234567889999999999998864

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=94.71  E-value=0.042  Score=46.44  Aligned_cols=90  Identities=12%  Similarity=0.231  Sum_probs=59.8

Q ss_pred             cEEEEcC-CC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-cCCCCceeEEEecceee
Q 025039           61 SVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-PFSNDCFDVVIEKATME  136 (259)
Q Consensus        61 ~vLDiGc-G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~l~  136 (259)
                      +||-.|+ |. |..+..+++. |. +|++++.+++.++.+++.    |.+. .+-..+.... ....+.+|+|+...   
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~~-vi~~~~~~~~~~~~~~~~d~v~d~~---  219 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSL----GANR-ILSRDEFAESRPLEKQLWAGAIDTV---  219 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TCSE-EEEGGGSSCCCSSCCCCEEEEEESS---
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCCE-EEecCCHHHHHhhcCCCccEEEECC---
Confidence            4999998 44 8888888776 55 999999999888888763    4322 1111221111 12235789887521   


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                                     +  .  ..+..+.+.|+|+|.++.+..
T Consensus       220 ---------------g--~--~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          220 ---------------G--D--KVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             ---------------C--H--HHHHHHHHTEEEEEEEEECCC
T ss_pred             ---------------C--c--HHHHHHHHHHhcCCEEEEEec
Confidence                           1  1  278888999999999998754

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=94.65  E-value=0.095  Score=45.15  Aligned_cols=95  Identities=17%  Similarity=0.179  Sum_probs=62.1

Q ss_pred             cCCCCCcEEEEc-CCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC----c-CCCCce
Q 025039           55 HIKPNSSVLELG-CGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----P-FSNDCF  126 (259)
Q Consensus        55 ~~~~~~~vLDiG-cG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~-~~~~~f  126 (259)
                      .++++.+||-.| +|. |..+..+++. |. +|++++.+++.++.+++    .+.+  .++..+-.++    . .....+
T Consensus       160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~--~~~~~~~~~~~~~~~~~~~~g~  232 (362)
T 2c0c_A          160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGCD--RPINYKTEPVGTVLKQEYPEGV  232 (362)
T ss_dssp             CCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCCc--EEEecCChhHHHHHHHhcCCCC
Confidence            466889999999 344 7777777765 55 89999999888887765    2322  2222111111    0 112469


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |+|+....                 .     ..++.+.+.|+++|.++++..
T Consensus       233 D~vid~~g-----------------~-----~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          233 DVVYESVG-----------------G-----AMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             EEEEECSC-----------------T-----HHHHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCC-----------------H-----HHHHHHHHHHhcCCEEEEEeC
Confidence            99885321                 1     467788899999999987653

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.52  E-value=0.025  Score=48.54  Aligned_cols=92  Identities=15%  Similarity=0.288  Sum_probs=60.4

Q ss_pred             CCCcEEEE-cCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc--ccCC-C-cCCCCceeEEE
Q 025039           58 PNSSVLEL-GCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA--DMLD-L-PFSNDCFDVVI  130 (259)
Q Consensus        58 ~~~~vLDi-GcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~--d~~~-~-~~~~~~fD~V~  130 (259)
                      ++.+||-. |+|. |..+..+++. |. +|++++.+++.++.+++.    |.+  .++..  ++.+ + ......+|+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~~~~~g~Dvv~  222 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKM----GAD--IVLNHKESLLNQFKTQGIELVDYVF  222 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHH----TCS--EEECTTSCHHHHHHHHTCCCEEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc--EEEECCccHHHHHHHhCCCCccEEE
Confidence            78899999 5665 7777777765 55 999999999988888763    322  12211  1100 0 01234699988


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ....                     ....++.+.++|+++|.++.+.
T Consensus       223 d~~g---------------------~~~~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          223 CTFN---------------------TDMYYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             ESSC---------------------HHHHHHHHHHHEEEEEEEEESS
T ss_pred             ECCC---------------------chHHHHHHHHHhccCCEEEEEC
Confidence            5321                     1346778889999999998653

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=94.42  E-value=0.16  Score=45.24  Aligned_cols=96  Identities=16%  Similarity=0.223  Sum_probs=62.7

Q ss_pred             cCCCCCcEEEEcC-CC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-------------
Q 025039           55 HIKPNSSVLELGC-GN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-------------  119 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-------------  119 (259)
                      .+.++.+||-+|+ |. |..+..+++....++++++.+++.++.+++.    |.+  .++...-.+.             
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~d~~~~~~~~~~~~~~  298 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM----GAE--AIIDRNAEGYRFWKDENTQDPKE  298 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCC--EEEETTTTTCCSEEETTEECHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh----CCc--EEEecCcCcccccccccccchHH
Confidence            4578899999998 54 7888877775333899999999888888653    322  1221110000             


Q ss_pred             --------c--CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          120 --------P--FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       120 --------~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                              .  .....+|+|+....                    .  ..+..+.++|+++|.++++..
T Consensus       299 ~~~~~~~i~~~t~g~g~Dvvid~~G--------------------~--~~~~~~~~~l~~~G~iv~~G~  345 (456)
T 3krt_A          299 WKRFGKRIRELTGGEDIDIVFEHPG--------------------R--ETFGASVFVTRKGGTITTCAS  345 (456)
T ss_dssp             HHHHHHHHHHHHTSCCEEEEEECSC--------------------H--HHHHHHHHHEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEcCC--------------------c--hhHHHHHHHhhCCcEEEEEec
Confidence                    0  12247999885321                    1  467788889999999998643

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=94.41  E-value=0.078  Score=45.20  Aligned_cols=96  Identities=18%  Similarity=0.234  Sum_probs=61.8

Q ss_pred             cCCCCCcEEEEcC-C-CCcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE-cccCCCc-----CCCCc
Q 025039           55 HIKPNSSVLELGC-G-NSRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLDLP-----FSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G-~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~-----~~~~~  125 (259)
                      .+.++.+||..|| | .|..+..+++ .|. +|++++.+++.++.+++.+   +. . .++. .+..++.     ...+.
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~---g~-~-~~~d~~~~~~~~~~~~~~~~~~  225 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKF---GF-D-DAFNYKEESDLTAALKRCFPNG  225 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTS---CC-S-EEEETTSCSCSHHHHHHHCTTC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CC-c-eEEecCCHHHHHHHHHHHhCCC
Confidence            4567899999997 3 3777766665 466 8999999998888776432   32 1 1121 1111110     11246


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+|+....                    .  ..+..+.+.|+++|.++++..
T Consensus       226 ~d~vi~~~g--------------------~--~~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          226 IDIYFENVG--------------------G--KMLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             EEEEEESSC--------------------H--HHHHHHHTTEEEEEEEEECCC
T ss_pred             CcEEEECCC--------------------H--HHHHHHHHHHhcCCEEEEEcc
Confidence            999885421                    1  367888899999999987643

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=94.32  E-value=0.014  Score=50.47  Aligned_cols=98  Identities=18%  Similarity=0.207  Sum_probs=62.8

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccC-CC--cCCCCceeE
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADML-DL--PFSNDCFDV  128 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~--~~~~~~fD~  128 (259)
                      ..+.++.+||-+|+|. |..+..+++. |. +|++++.+++.++.+++.    |.+  .++...-. +.  ... +.+|+
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~v~~~~~~~~~~~~~~-~~~D~  246 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GAD--HYIATLEEGDWGEKYF-DTFDL  246 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS--EEEEGGGTSCHHHHSC-SCEEE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHc----CCC--EEEcCcCchHHHHHhh-cCCCE
Confidence            3467889999999976 7777777764 66 899999998888887753    322  22221111 11  111 47999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |+......                   ....++.+.++|+++|.++.+..
T Consensus       247 vid~~g~~-------------------~~~~~~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          247 IVVCASSL-------------------TDIDFNIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             EEECCSCS-------------------TTCCTTTGGGGEEEEEEEEECCC
T ss_pred             EEECCCCC-------------------cHHHHHHHHHHhcCCCEEEEecC
Confidence            98642210                   00235567789999999987654

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.21  E-value=0.11  Score=44.12  Aligned_cols=96  Identities=15%  Similarity=0.157  Sum_probs=60.2

Q ss_pred             cCCCCCcEEEEcCC--CCcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-----cCCCCce
Q 025039           55 HIKPNSSVLELGCG--NSRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSNDCF  126 (259)
Q Consensus        55 ~~~~~~~vLDiGcG--~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~f  126 (259)
                      .+.++.+||..||+  .|..+..++. .|. +|+++|.+++.++.+++.    +. ...+-..+..+.     ....+.+
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~----g~-~~~~d~~~~~~~~~~~~~~~~~~~  215 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQI----GF-DAAFNYKTVNSLEEALKKASPDGY  215 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT----TC-SEEEETTSCSCHHHHHHHHCTTCE
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc----CC-cEEEecCCHHHHHHHHHHHhCCCC
Confidence            45678999999983  3666665555 466 999999999888877432    32 211111110111     0112469


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |+++.+..                    .  ..+..+.+.|++||.++++..
T Consensus       216 d~vi~~~g--------------------~--~~~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          216 DCYFDNVG--------------------G--EFLNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             EEEEESSC--------------------H--HHHHHHHTTEEEEEEEEECCC
T ss_pred             eEEEECCC--------------------h--HHHHHHHHHHhcCCEEEEEec
Confidence            99886432                    1  247788899999999988653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.13  E-value=0.39  Score=36.75  Aligned_cols=95  Identities=15%  Similarity=0.129  Sum_probs=57.2

Q ss_pred             CCcEEEEcCCC-Cc-chHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----C-CCCceeEEE
Q 025039           59 NSSVLELGCGN-SR-LSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----F-SNDCFDVVI  130 (259)
Q Consensus        59 ~~~vLDiGcG~-G~-~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~V~  130 (259)
                      +.+|+-+|||. |. ++..|.+. |. +|+++|.+++.++.+++.       .+.+..+|..+..    . ....+|+|+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~-------g~~~~~gd~~~~~~l~~~~~~~~ad~vi  110 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSE-------GRNVISGDATDPDFWERILDTGHVKLVL  110 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHT-------TCCEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHC-------CCCEEEcCCCCHHHHHhccCCCCCCEEE
Confidence            56899999886 54 34455556 77 899999999887766542       3455666664421    1 234689888


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ....                 +......+ -...+.+.|++.++....+
T Consensus       111 ~~~~-----------------~~~~~~~~-~~~~~~~~~~~~ii~~~~~  141 (183)
T 3c85_A          111 LAMP-----------------HHQGNQTA-LEQLQRRNYKGQIAAIAEY  141 (183)
T ss_dssp             ECCS-----------------SHHHHHHH-HHHHHHTTCCSEEEEEESS
T ss_pred             EeCC-----------------ChHHHHHH-HHHHHHHCCCCEEEEEECC
Confidence            5321                 11222223 3355566777887775443

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=94.06  E-value=0.17  Score=42.73  Aligned_cols=94  Identities=20%  Similarity=0.186  Sum_probs=58.6

Q ss_pred             ccCCCCCcEEEEc-CCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-CcCCCCceeEE
Q 025039           54 PHIKPNSSVLELG-CGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVV  129 (259)
Q Consensus        54 ~~~~~~~~vLDiG-cG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V  129 (259)
                      ..+.++.+||-+| +|. |..+..+++. |. ++++++ ++...+.+++    .|.+.  ++..+-.+ +...-..+|+|
T Consensus       148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~----lGa~~--~i~~~~~~~~~~~~~g~D~v  219 (321)
T 3tqh_A          148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKA----LGAEQ--CINYHEEDFLLAISTPVDAV  219 (321)
T ss_dssp             TTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHH----HTCSE--EEETTTSCHHHHCCSCEEEE
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHH----cCCCE--EEeCCCcchhhhhccCCCEE
Confidence            3567899999997 665 8888888776 55 899887 5554665554    34322  22211111 11111468998


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +....                      ...+..+.++|+++|.++.+.
T Consensus       220 ~d~~g----------------------~~~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          220 IDLVG----------------------GDVGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             EESSC----------------------HHHHHHHGGGEEEEEEEEECC
T ss_pred             EECCC----------------------cHHHHHHHHhccCCCEEEEeC
Confidence            85321                      022377889999999999764

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=93.98  E-value=0.035  Score=47.82  Aligned_cols=98  Identities=24%  Similarity=0.302  Sum_probs=60.6

Q ss_pred             cCC-CCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEe
Q 025039           55 HIK-PNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIE  131 (259)
Q Consensus        55 ~~~-~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  131 (259)
                      .+. ++.+||-+|+|. |..+..+++. |. +|++++.+++.++.+++.   .|.+.+ +...+...+....+.+|+|+.
T Consensus       176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~---lGa~~v-i~~~~~~~~~~~~~g~D~vid  250 (357)
T 2cf5_A          176 GLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQD---LGADDY-VIGSDQAKMSELADSLDYVID  250 (357)
T ss_dssp             STTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTT---SCCSCE-EETTCHHHHHHSTTTEEEEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHH---cCCcee-eccccHHHHHHhcCCCCEEEE
Confidence            455 889999999876 7777777665 66 899999998777766532   243221 111111011101136999885


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ...-.                     ..++...++|+++|.++.+..
T Consensus       251 ~~g~~---------------------~~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          251 TVPVH---------------------HALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             CCCSC---------------------CCSHHHHTTEEEEEEEEECSC
T ss_pred             CCCCh---------------------HHHHHHHHHhccCCEEEEeCC
Confidence            42211                     134567789999999988654

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=93.93  E-value=0.15  Score=43.49  Aligned_cols=97  Identities=20%  Similarity=0.321  Sum_probs=62.4

Q ss_pred             ccCCCCCcEEEEcCCC--CcchHHHHh-c-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-----cCCC-
Q 025039           54 PHIKPNSSVLELGCGN--SRLSEGLYN-D-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSN-  123 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~--G~~~~~l~~-~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~-  123 (259)
                      ..+.++.+||..|+|.  |..+..+++ . |. +|+++|.+++.++.+++.    +. ...+...+ .+.     .... 
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~----g~-~~~~~~~~-~~~~~~~~~~~~~  238 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA----GA-DYVINASM-QDPLAEIRRITES  238 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH----TC-SEEEETTT-SCHHHHHHHHTTT
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh----CC-CEEecCCC-ccHHHHHHHHhcC
Confidence            3466889999999984  555555554 4 66 899999999888877643    32 21111111 110     0111 


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +.+|+|+....-                     ...++.+.++|+++|.++++..
T Consensus       239 ~~~d~vi~~~g~---------------------~~~~~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          239 KGVDAVIDLNNS---------------------EKTLSVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             SCEEEEEESCCC---------------------HHHHTTGGGGEEEEEEEEECCS
T ss_pred             CCceEEEECCCC---------------------HHHHHHHHHHHhcCCEEEEECC
Confidence            479998864321                     2467788899999999988654

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=93.92  E-value=0.14  Score=43.96  Aligned_cols=95  Identities=19%  Similarity=0.208  Sum_probs=61.6

Q ss_pred             cCCCCCcEEEEc-CCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----CCCCce
Q 025039           55 HIKPNSSVLELG-CGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCF  126 (259)
Q Consensus        55 ~~~~~~~vLDiG-cG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~f  126 (259)
                      .++++.+||-.| +|. |..+..+++. |. +|++++.+++.++.+++.    +.+  .++..+-.+..     .....+
T Consensus       164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~~~~~~~~~~~~~~~~~~~~g~  236 (353)
T 4dup_A          164 GLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERL----GAK--RGINYRSEDFAAVIKAETGQGV  236 (353)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHHSSCE
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCC--EEEeCCchHHHHHHHHHhCCCc
Confidence            456889999995 343 7777777665 55 899999999988888763    322  22221111110     113469


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |+|+....-                      ..+....+.|+++|.++++..
T Consensus       237 Dvvid~~g~----------------------~~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          237 DIILDMIGA----------------------AYFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             EEEEESCCG----------------------GGHHHHHHTEEEEEEEEECCC
T ss_pred             eEEEECCCH----------------------HHHHHHHHHhccCCEEEEEEe
Confidence            998864321                      256778889999999998654

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=93.89  E-value=0.17  Score=43.31  Aligned_cols=95  Identities=19%  Similarity=0.221  Sum_probs=60.2

Q ss_pred             cCCCCCcEEEEcC-C-CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC----c--CCCCc
Q 025039           55 HIKPNSSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----P--FSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~--~~~~~  125 (259)
                      .+.++.+||-.|+ | .|..+..+++. |. +|++++.+++.++.+++.    +..  .++..+-.+.    .  .....
T Consensus       167 ~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga~--~~~d~~~~~~~~~~~~~~~~~~  239 (351)
T 1yb5_A          167 CVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQN----GAH--EVFNHREVNYIDKIKKYVGEKG  239 (351)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT----TCS--EEEETTSTTHHHHHHHHHCTTC
T ss_pred             CCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHc----CCC--EEEeCCCchHHHHHHHHcCCCC
Confidence            4568899999997 3 36666666554 65 899999999888766542    321  1221111110    0  12236


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+|+....                    .  ..+....+.|+++|.++++..
T Consensus       240 ~D~vi~~~G--------------------~--~~~~~~~~~l~~~G~iv~~g~  270 (351)
T 1yb5_A          240 IDIIIEMLA--------------------N--VNLSKDLSLLSHGGRVIVVGS  270 (351)
T ss_dssp             EEEEEESCH--------------------H--HHHHHHHHHEEEEEEEEECCC
T ss_pred             cEEEEECCC--------------------h--HHHHHHHHhccCCCEEEEEec
Confidence            999885321                    1  246778899999999998653

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=93.83  E-value=0.63  Score=40.33  Aligned_cols=114  Identities=23%  Similarity=0.211  Sum_probs=76.0

Q ss_pred             ccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCC
Q 025039           41 WLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLD  118 (259)
Q Consensus        41 w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~  118 (259)
                      |-...+.+.+.+... ..+.+||.++.+.|.++..++..++   +.+.=|--....++.|+..++++.  +++... ...
T Consensus        22 ~da~d~~ll~~~~~~-~~~~~~~~~~d~~gal~~~~~~~~~---~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~   96 (375)
T 4dcm_A           22 WEAADEYLLQQLDDT-EIRGPVLILNDAFGALSCALAEHKP---YSIGDSYISELATRENLRLNGIDESSVKFLDS-TAD   96 (375)
T ss_dssp             CCHHHHHHHHTTTTC-CCCSCEEEECCSSSHHHHHTGGGCC---EEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSC
T ss_pred             cchHHHHHHHhhhhc-cCCCCEEEECCCCCHHHHhhccCCc---eEEEhHHHHHHHHHHHHHHcCCCccceEeccc-ccc
Confidence            444444444443332 2457899999999999998876543   344336556677778888888754  555422 222


Q ss_pred             CcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          119 LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       119 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                         ....+|+|+..-+                .........|..+...|+||+.+++..-
T Consensus        97 ---~~~~~~~v~~~lp----------------k~~~~l~~~L~~l~~~l~~~~~i~~~g~  137 (375)
T 4dcm_A           97 ---YPQQPGVVLIKVP----------------KTLALLEQQLRALRKVVTSDTRIIAGAK  137 (375)
T ss_dssp             ---CCSSCSEEEEECC----------------SCHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred             ---cccCCCEEEEEcC----------------CCHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence               2357999885321                3557788899999999999999987654

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=93.80  E-value=0.2  Score=42.78  Aligned_cols=91  Identities=15%  Similarity=0.226  Sum_probs=60.0

Q ss_pred             cCCCCCcEEEEcC-CC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc------CCCCc
Q 025039           55 HIKPNSSVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~  125 (259)
                      .+.++.+||-+|+ |. |..+..+++. |. +|+++ .+++.++.+++.    +.+ .  +. +-.+..      .....
T Consensus       147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~l----Ga~-~--i~-~~~~~~~~~~~~~~~~g  216 (343)
T 3gaz_A          147 QVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDL----GAT-P--ID-ASREPEDYAAEHTAGQG  216 (343)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHH----TSE-E--EE-TTSCHHHHHHHHHTTSC
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHc----CCC-E--ec-cCCCHHHHHHHHhcCCC
Confidence            4568899999994 44 7777777765 55 89999 888887777653    321 1  22 111111      12346


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +|+|+....                      ...+..+.+.|+++|.++.+.
T Consensus       217 ~D~vid~~g----------------------~~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          217 FDLVYDTLG----------------------GPVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             EEEEEESSC----------------------THHHHHHHHHEEEEEEEEESC
T ss_pred             ceEEEECCC----------------------cHHHHHHHHHHhcCCeEEEEc
Confidence            999885321                      146778888999999999754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.77  E-value=0.63  Score=33.80  Aligned_cols=66  Identities=17%  Similarity=0.215  Sum_probs=45.1

Q ss_pred             CCcEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEec
Q 025039           59 NSSVLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEK  132 (259)
Q Consensus        59 ~~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~  132 (259)
                      ..+|+-+|||. |. ++..|.+.|. +|+++|.+++.++.+++.       .+.++.+|..+..    .....+|+|+..
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDE-------GFDAVIADPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-------TCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC-------CCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence            45799999976 33 4445555677 899999999888776642       3567788876632    122468888753

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=93.77  E-value=0.66  Score=37.64  Aligned_cols=120  Identities=10%  Similarity=0.155  Sum_probs=69.4

Q ss_pred             CCCcEEEEcCC--CCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----C
Q 025039           58 PNSSVLELGCG--NSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----S  122 (259)
Q Consensus        58 ~~~~vLDiGcG--~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~  122 (259)
                      .++++|-.|++  .|.   ++..|++.|. +|+.++.++...+.+.+.....+-.++.++..|+.+..     +     .
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            46789999976  332   5566777788 89999988766666665555444335888889987742     0     1


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHH--------HHHHHHHHHHhcccCCcEEEEEec
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVT--------KVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .+.+|+++.+..+...-..........++...        ....+++.+...++++|.++.+..
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  148 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY  148 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence            13689888764432100000000000011111        112356677788888899888653

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.69  E-value=0.3  Score=41.56  Aligned_cols=93  Identities=15%  Similarity=0.190  Sum_probs=61.7

Q ss_pred             cCCCCCcEEEEcC--CCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--------CCC
Q 025039           55 HIKPNSSVLELGC--GNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSN  123 (259)
Q Consensus        55 ~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~  123 (259)
                      .+.++.+||..|+  |.|..+..+++. |. +|++++.+++.++.+++.    +..  .++  |..+..        ...
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----ga~--~~~--d~~~~~~~~~~~~~~~~  233 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKAL----GAD--ETV--NYTHPDWPKEVRRLTGG  233 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS--EEE--ETTSTTHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc----CCC--EEE--cCCcccHHHHHHHHhCC
Confidence            4567899999998  347777766664 66 999999999988887642    322  122  221110        122


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ..+|+|+.... .                     ..++.+.+.|+++|.++.+..
T Consensus       234 ~~~d~vi~~~g-~---------------------~~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          234 KGADKVVDHTG-A---------------------LYFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             TCEEEEEESSC-S---------------------SSHHHHHHHEEEEEEEEESSC
T ss_pred             CCceEEEECCC-H---------------------HHHHHHHHhhccCCEEEEEec
Confidence            46999986432 1                     246778889999999987654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=93.67  E-value=0.18  Score=43.15  Aligned_cols=95  Identities=12%  Similarity=0.064  Sum_probs=59.7

Q ss_pred             cCCCCCcEEEEcC-C-CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-----c-CCCCc
Q 025039           55 HIKPNSSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----P-FSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~  125 (259)
                      .+.++.+||-.|+ | .|..+..++.. |. +|++++.+++.++.+++.    +. . .++..+-.+.     . .....
T Consensus       159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----g~-~-~~~~~~~~~~~~~~~~~~~~~~  231 (354)
T 2j8z_A          159 NVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL----GA-A-AGFNYKKEDFSEATLKFTKGAG  231 (354)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TC-S-EEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CC-c-EEEecCChHHHHHHHHHhcCCC
Confidence            4567899999984 3 36666666554 55 899999999888887543    32 1 1121111110     0 12246


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+++....-                      ..+....++|+++|.++++..
T Consensus       232 ~d~vi~~~G~----------------------~~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          232 VNLILDCIGG----------------------SYWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             EEEEEESSCG----------------------GGHHHHHHHEEEEEEEEECCC
T ss_pred             ceEEEECCCc----------------------hHHHHHHHhccCCCEEEEEec
Confidence            9998864321                      145667889999999998654

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=93.64  E-value=0.067  Score=46.20  Aligned_cols=97  Identities=20%  Similarity=0.274  Sum_probs=59.7

Q ss_pred             cCC-CCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc-ccCCCcCCCCceeEEE
Q 025039           55 HIK-PNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDLPFSNDCFDVVI  130 (259)
Q Consensus        55 ~~~-~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~~fD~V~  130 (259)
                      .+. ++.+||-+|+|. |..+..+++. |. +|++++.+++.++.+++.+   |.+  .++.. +...+....+.+|+|+
T Consensus       183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~l---Ga~--~v~~~~~~~~~~~~~~~~D~vi  256 (366)
T 1yqd_A          183 GLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNF---GAD--SFLVSRDQEQMQAAAGTLDGII  256 (366)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTS---CCS--EEEETTCHHHHHHTTTCEEEEE
T ss_pred             CcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc---CCc--eEEeccCHHHHHHhhCCCCEEE
Confidence            355 789999999876 7777766665 55 8999999988777665332   322  22211 1001110113699998


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ......                     ..++.+.++|+++|.++.+..
T Consensus       257 d~~g~~---------------------~~~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          257 DTVSAV---------------------HPLLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             ECCSSC---------------------CCSHHHHHHEEEEEEEEECCC
T ss_pred             ECCCcH---------------------HHHHHHHHHHhcCCEEEEEcc
Confidence            642211                     124566788999999987654

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=93.61  E-value=0.18  Score=43.40  Aligned_cols=89  Identities=20%  Similarity=0.235  Sum_probs=57.6

Q ss_pred             CCcEEEEcCCC-CcchHHHHh-cCCCeEEEeeCCH---HHHHHHHHHHhhcCCCCeEEEEcccCCCc--C--CCCceeEE
Q 025039           59 NSSVLELGCGN-SRLSEGLYN-DGITAITCIDLSA---VAVEKMQERLLLKGYKEVKVLEADMLDLP--F--SNDCFDVV  129 (259)
Q Consensus        59 ~~~vLDiGcG~-G~~~~~l~~-~~~~~v~~vD~s~---~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~--~~~~fD~V  129 (259)
                      +.+||-+|+|. |..+..+++ .|. +|++++.++   +.++.+++.    +.+.+   ..+  ++.  .  ....+|+|
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~----ga~~v---~~~--~~~~~~~~~~~~~d~v  250 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEET----KTNYY---NSS--NGYDKLKDSVGKFDVI  250 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHH----TCEEE---ECT--TCSHHHHHHHCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHh----CCcee---chH--HHHHHHHHhCCCCCEE
Confidence            89999999954 666666655 466 999999987   777766543    32112   111  111  0  01469998


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHH-HHHHhcccCCcEEEEEec
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAML-EGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~  178 (259)
                      +.....                     ...+ +.+.+.|+++|.++++..
T Consensus       251 id~~g~---------------------~~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          251 IDATGA---------------------DVNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             EECCCC---------------------CTHHHHHHGGGEEEEEEEEECSC
T ss_pred             EECCCC---------------------hHHHHHHHHHHHhcCCEEEEEec
Confidence            864321                     1245 788999999999988654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.23  E-value=0.015  Score=49.80  Aligned_cols=95  Identities=17%  Similarity=0.164  Sum_probs=60.7

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----CCCCcee
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD  127 (259)
                      .+ ++.+||-+|+|. |..+..+++. |..+|++++.+++.++.+++. .     . .++..+-.++.     .....+|
T Consensus       162 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-----~-~v~~~~~~~~~~~~~~~~~~g~D  233 (343)
T 2dq4_A          162 GV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-----D-RLVNPLEEDLLEVVRRVTGSGVE  233 (343)
T ss_dssp             CC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-----S-EEECTTTSCHHHHHHHHHSSCEE
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-----H-hccCcCccCHHHHHHHhcCCCCC
Confidence            45 889999999965 7777777775 443899999998877666442 1     1 11211101100     0124699


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+....-                     ...++.+.++|+++|.++.+..
T Consensus       234 ~vid~~g~---------------------~~~~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          234 VLLEFSGN---------------------EAAIHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             EEEECSCC---------------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCC---------------------HHHHHHHHHHHhcCCEEEEEec
Confidence            99853211                     2457788899999999988654

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=93.05  E-value=0.61  Score=38.51  Aligned_cols=77  Identities=14%  Similarity=0.176  Sum_probs=53.8

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-c--------C--CC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-P--------F--SN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~--------~--~~  123 (259)
                      .+++||-.|++.|.   ++..|++.|. +|++++.++...+.+.+.+...+-.++.++..|+.+. .        .  ..
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            45678888876652   4555666787 8999999998887777776655544688889998775 2        0  11


Q ss_pred             CceeEEEeccee
Q 025039          124 DCFDVVIEKATM  135 (259)
Q Consensus       124 ~~fD~V~~~~~l  135 (259)
                      +..|+++.+..+
T Consensus        90 g~iD~lv~nAg~  101 (311)
T 3o26_A           90 GKLDILVNNAGV  101 (311)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            468999877543

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=93.03  E-value=0.056  Score=45.28  Aligned_cols=93  Identities=13%  Similarity=0.130  Sum_probs=59.3

Q ss_pred             CCCCCcEEEEcC-CC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEccc-CCCcCCCCceeEEEe
Q 025039           56 IKPNSSVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM-LDLPFSNDCFDVVIE  131 (259)
Q Consensus        56 ~~~~~~vLDiGc-G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~~  131 (259)
                      +.++.+||-.|+ |. |..+..+++. |. +|++++.+++.++.+++    .+.+  .++..+- .+....-..+|+|+.
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~--~~~~~~~~~~~~~~~~~~d~vid  195 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAE--EAATYAEVPERAKAWGGLDLVLE  195 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCS--EEEEGGGHHHHHHHTTSEEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC--EEEECCcchhHHHHhcCceEEEE
Confidence            678899999998 43 7777777664 55 99999999888777754    2322  2222110 111000046899885


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                       ..-                      ..++.+.+.|+++|.++.+..
T Consensus       196 -~g~----------------------~~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          196 -VRG----------------------KEVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             -CSC----------------------TTHHHHHTTEEEEEEEEEC--
T ss_pred             -CCH----------------------HHHHHHHHhhccCCEEEEEeC
Confidence             221                      246778899999999987643

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=92.99  E-value=0.21  Score=42.65  Aligned_cols=94  Identities=19%  Similarity=0.181  Sum_probs=61.3

Q ss_pred             cCCCCCcEEEEcCC--CCcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccC---CCc-----CCC
Q 025039           55 HIKPNSSVLELGCG--NSRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADML---DLP-----FSN  123 (259)
Q Consensus        55 ~~~~~~~vLDiGcG--~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~---~~~-----~~~  123 (259)
                      .+.++.+||..|++  .|..+..++. .|. +|++++.+++.++.+++.    +. . .++  |..   ++.     ...
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~----g~-~-~~~--d~~~~~~~~~~~~~~~~  236 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSI----GG-E-VFI--DFTKEKDIVGAVLKATD  236 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHT----TC-C-EEE--ETTTCSCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHc----CC-c-eEE--ecCccHhHHHHHHHHhC
Confidence            45688999999983  3666666665 466 999999998877766542    32 1 122  322   110     111


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +.+|+|+.....                     ...++.+.+.|+++|.++.+..
T Consensus       237 ~~~D~vi~~~g~---------------------~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          237 GGAHGVINVSVS---------------------EAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             SCEEEEEECSSC---------------------HHHHHHHTTSEEEEEEEEECCC
T ss_pred             CCCCEEEECCCc---------------------HHHHHHHHHHHhcCCEEEEEeC
Confidence            268998864321                     2467888999999999987654

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=92.90  E-value=0.094  Score=44.42  Aligned_cols=96  Identities=18%  Similarity=0.286  Sum_probs=60.8

Q ss_pred             cCCCCC-cEEEEcC-CC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEccc-CC-C-cCCCCcee
Q 025039           55 HIKPNS-SVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM-LD-L-PFSNDCFD  127 (259)
Q Consensus        55 ~~~~~~-~vLDiGc-G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~-~-~~~~~~fD  127 (259)
                      .+.++. +||-.|+ |. |..+..+++. |. ++++++.+++.++.+++.    |.+.+ +-..+. .+ . ......+|
T Consensus       146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~l----Ga~~v-~~~~~~~~~~~~~~~~~~~d  219 (330)
T 1tt7_A          146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GASEV-ISREDVYDGTLKALSKQQWQ  219 (330)
T ss_dssp             TCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCSEE-EEHHHHCSSCCCSSCCCCEE
T ss_pred             CcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCcEE-EECCCchHHHHHHhhcCCcc
Confidence            355664 8999998 44 7777777664 66 899999988777777652    33221 111111 11 1 12234689


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+....                    .  ..+....+.|+++|.++++..
T Consensus       220 ~vid~~g--------------------~--~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          220 GAVDPVG--------------------G--KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             EEEESCC--------------------T--HHHHHHHTTEEEEEEEEECCC
T ss_pred             EEEECCc--------------------H--HHHHHHHHhhcCCCEEEEEec
Confidence            9885321                    1  257788899999999998654

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=92.87  E-value=0.088  Score=44.58  Aligned_cols=96  Identities=18%  Similarity=0.320  Sum_probs=59.5

Q ss_pred             cCCCCC-cEEEEcC-CC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEccc-CC-C-cCCCCcee
Q 025039           55 HIKPNS-SVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM-LD-L-PFSNDCFD  127 (259)
Q Consensus        55 ~~~~~~-~vLDiGc-G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~-~-~~~~~~fD  127 (259)
                      .+.++. +||-.|+ |. |..+..+++. |. ++++++.+++.++.+++    .|.+.+ +-..+. .+ . ......+|
T Consensus       145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~~~-i~~~~~~~~~~~~~~~~~~d  218 (328)
T 1xa0_A          145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAKEV-LAREDVMAERIRPLDKQRWA  218 (328)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCSEE-EECC---------CCSCCEE
T ss_pred             CCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCCcEE-EecCCcHHHHHHHhcCCccc
Confidence            355664 8999997 44 7777777765 55 89999999887777764    243221 111111 01 1 11234689


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+....                    .  ..+..+.+.|+++|.++++..
T Consensus       219 ~vid~~g--------------------~--~~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          219 AAVDPVG--------------------G--RTLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             EEEECST--------------------T--TTHHHHHHTEEEEEEEEECSC
T ss_pred             EEEECCc--------------------H--HHHHHHHHhhccCCEEEEEee
Confidence            8875321                    0  246778889999999998654

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=92.62  E-value=0.14  Score=50.02  Aligned_cols=72  Identities=19%  Similarity=0.249  Sum_probs=52.8

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC---------------cC
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL---------------PF  121 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---------------~~  121 (259)
                      ...+++|+.||.|.++..+.++|. ..+.++|+++.+++.-+.++     ++..++..|+.++               .+
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~~l  613 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQRL  613 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhhhc
Confidence            345899999999999999999997 47889999999998887775     3455555554221               01


Q ss_pred             -CCCceeEEEecce
Q 025039          122 -SNDCFDVVIEKAT  134 (259)
Q Consensus       122 -~~~~fD~V~~~~~  134 (259)
                       ..+.+|+|+...+
T Consensus       614 p~~~~vDll~GGpP  627 (1002)
T 3swr_A          614 PQKGDVEMLCGGPP  627 (1002)
T ss_dssp             CCTTTCSEEEECCC
T ss_pred             ccCCCeeEEEEcCC
Confidence             1346899987644

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=92.61  E-value=1.1  Score=36.41  Aligned_cols=76  Identities=14%  Similarity=0.100  Sum_probs=55.2

Q ss_pred             CCCcEEEEcCCC--C---cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CC
Q 025039           58 PNSSVLELGCGN--S---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FS  122 (259)
Q Consensus        58 ~~~~vLDiGcG~--G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~  122 (259)
                      +++++|--|++.  |   ..+..|++.|. +|+.++.+++.++.+.+.+...+-..+.++..|+.+..          ..
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKD   83 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            578899999643  3   25666777888 89999999988888888777665456788888887622          11


Q ss_pred             CCceeEEEecce
Q 025039          123 NDCFDVVIEKAT  134 (259)
Q Consensus       123 ~~~fD~V~~~~~  134 (259)
                      -+..|+++.+..
T Consensus        84 ~G~iD~lvnnAg   95 (256)
T 4fs3_A           84 VGNIDGVYHSIA   95 (256)
T ss_dssp             HCCCSEEEECCC
T ss_pred             hCCCCEEEeccc
Confidence            257898887644

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=92.56  E-value=0.97  Score=37.34  Aligned_cols=111  Identities=11%  Similarity=0.077  Sum_probs=70.0

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      +++.+|--|++.|.   .+..|++.|. +|+.+|.+++.++.+.+.+   + .++..+..|+.+..          ..-+
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~G  102 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---G-GGAVGIQADSANLAELDRLYEKVKAEAG  102 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C-TTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C-CCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            57788888888763   5666777888 8999999998888776554   3 24667788887632          1125


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHH--------HHHHHHHHHhcccCCcEEEEEe
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTK--------VMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ..|+++.+......    ...+.-.++..+.        .-.+.+.+.+.|+.+|.++.+.
T Consensus       103 ~iDiLVNNAG~~~~----~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis  159 (273)
T 4fgs_A          103 RIDVLFVNAGGGSM----LPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG  159 (273)
T ss_dssp             CEEEEEECCCCCCC----CCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             CCCEEEECCCCCCC----CChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            78998877543221    1111111112111        1235566778888888887764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=92.56  E-value=0.38  Score=42.54  Aligned_cols=97  Identities=15%  Similarity=0.153  Sum_probs=61.9

Q ss_pred             cCCCCCcEEEEcC-CC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE--cccCC------------
Q 025039           55 HIKPNSSVLELGC-GN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE--ADMLD------------  118 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~--~d~~~------------  118 (259)
                      .+.++.+||-.|+ |. |..+..+++....++++++.+++.++.+++.    |.+. .+..  .+..+            
T Consensus       217 ~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~l----Ga~~-~i~~~~~~~~~~~~~~~~~~~~~  291 (447)
T 4a0s_A          217 QMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRAL----GCDL-VINRAELGITDDIADDPRRVVET  291 (447)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCCC-EEEHHHHTCCTTGGGCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCCE-EEecccccccccccccccccchh
Confidence            4678899999998 44 7777777765333899999999888877542    4322 1111  11100            


Q ss_pred             -------C-cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          119 -------L-PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       119 -------~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                             + ......+|+|+....                    .  ..++...+.|+++|.++++..
T Consensus       292 ~~~~~~~v~~~~g~g~Dvvid~~G--------------------~--~~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          292 GRKLAKLVVEKAGREPDIVFEHTG--------------------R--VTFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHHHHHHHHHSSCCSEEEECSC--------------------H--HHHHHHHHHSCTTCEEEESCC
T ss_pred             hhHHHHHHHHHhCCCceEEEECCC--------------------c--hHHHHHHHHHhcCCEEEEEec
Confidence                   0 001246899885321                    1  356778889999999998653

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=92.51  E-value=0.038  Score=47.93  Aligned_cols=94  Identities=15%  Similarity=0.142  Sum_probs=57.2

Q ss_pred             CCCCCcEEEEc-CCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEE
Q 025039           56 IKPNSSVLELG-CGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVV  129 (259)
Q Consensus        56 ~~~~~~vLDiG-cG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V  129 (259)
                      +.++.+||-.| +|. |..+..+++. |. +|++++ +++..+.+++    .|.+  .++..+-.+..   .....+|+|
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~--~v~~~~~~~~~~~~~~~~g~D~v  252 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRK----LGAD--DVIDYKSGSVEEQLKSLKPFDFI  252 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCS--EEEETTSSCHHHHHHTSCCBSEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHH----cCCC--EEEECCchHHHHHHhhcCCCCEE
Confidence            56789999999 454 7777777765 55 899998 6666666543    3432  22221111110   112468998


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +....-                    ....+....+.|+++|.++.+.
T Consensus       253 id~~g~--------------------~~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          253 LDNVGG--------------------STETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             EESSCT--------------------THHHHGGGGBCSSSCCEEEESC
T ss_pred             EECCCC--------------------hhhhhHHHHHhhcCCcEEEEeC
Confidence            853211                    1124567788999999998764

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=92.39  E-value=0.3  Score=42.56  Aligned_cols=53  Identities=13%  Similarity=0.199  Sum_probs=37.3

Q ss_pred             CCCcEEEEcCCCCcchHHHHhc-------CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEE
Q 025039           58 PNSSVLELGCGNSRLSEGLYND-------GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVL  112 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~-------~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~  112 (259)
                      .+..|+|+|+|.|.++.-+.+.       ... +++.||+|+...+.=++++...  .++.+.
T Consensus        80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~--~~v~W~  140 (387)
T 1zkd_A           80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI--RNIHWH  140 (387)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC--SSEEEE
T ss_pred             CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC--CCeEEe
Confidence            3457999999999998877643       122 7999999998887666655432  245554

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=92.32  E-value=0.37  Score=40.76  Aligned_cols=93  Identities=16%  Similarity=0.192  Sum_probs=60.5

Q ss_pred             cCCCCCcEEEEcC--CCCcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--------CCC
Q 025039           55 HIKPNSSVLELGC--GNSRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSN  123 (259)
Q Consensus        55 ~~~~~~~vLDiGc--G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~  123 (259)
                      .+.++.+||-.|+  |.|..+..++. .|. +|++++.+++.++.+++.    +. .. ++  |..+..        ...
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----g~-~~-~~--d~~~~~~~~~i~~~~~~  212 (333)
T 1wly_A          142 KVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKL----GC-HH-TI--NYSTQDFAEVVREITGG  212 (333)
T ss_dssp             CCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TC-SE-EE--ETTTSCHHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC-CE-EE--ECCCHHHHHHHHHHhCC
Confidence            4568899999996  34666665555 466 999999999888877652    32 21 12  221110        112


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ..+|+++....-                      ..++.+.++|+++|.++.+..
T Consensus       213 ~~~d~vi~~~g~----------------------~~~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          213 KGVDVVYDSIGK----------------------DTLQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             CCEEEEEECSCT----------------------TTHHHHHHTEEEEEEEEECCC
T ss_pred             CCCeEEEECCcH----------------------HHHHHHHHhhccCCEEEEEec
Confidence            368998854221                      356788899999999987654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.28  E-value=1.3  Score=32.59  Aligned_cols=98  Identities=13%  Similarity=0.076  Sum_probs=58.3

Q ss_pred             CCcEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCC-HHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEe
Q 025039           59 NSSVLELGCGN-SR-LSEGLYNDGITAITCIDLS-AVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE  131 (259)
Q Consensus        59 ~~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~  131 (259)
                      ..+|+-+|+|. |. ++..|.+.|. +|+++|.+ ++..+...+...    ..+.++.+|..+..    ..-...|+|++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~----~~~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhc----CCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence            45788888865 33 3334455576 89999997 455555444322    24788888886522    12346888886


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ...                  .......+....+.+.|...++....+
T Consensus        78 ~~~------------------~d~~n~~~~~~a~~~~~~~~ii~~~~~  107 (153)
T 1id1_A           78 LSD------------------NDADNAFVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             CSS------------------CHHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred             ecC------------------ChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence            321                  123344555566667777777765433

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.21  E-value=0.27  Score=41.48  Aligned_cols=95  Identities=19%  Similarity=0.150  Sum_probs=60.7

Q ss_pred             cCCCCCcEEEEcC-C-CCcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC----c--CCCCc
Q 025039           55 HIKPNSSVLELGC-G-NSRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----P--FSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G-~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~--~~~~~  125 (259)
                      .+.++.+||-.|+ | .|..+..++. .|. +|++++.+++.++.+++.    +. . .++..+-.+.    .  .....
T Consensus       137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~----g~-~-~~~~~~~~~~~~~~~~~~~~~~  209 (327)
T 1qor_A          137 EIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GA-W-QVINYREEDLVERLKEITGGKK  209 (327)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TC-S-EEEETTTSCHHHHHHHHTTTCC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CC-C-EEEECCCccHHHHHHHHhCCCC
Confidence            4567899999994 3 3666665555 466 899999999888877652    32 2 1121111110    0  11236


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+++.+..                      ...++.+.++|+++|.++++..
T Consensus       210 ~D~vi~~~g----------------------~~~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          210 VRVVYDSVG----------------------RDTWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             EEEEEECSC----------------------GGGHHHHHHTEEEEEEEEECCC
T ss_pred             ceEEEECCc----------------------hHHHHHHHHHhcCCCEEEEEec
Confidence            999886432                      1357788899999999987654

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=92.20  E-value=1.6  Score=36.16  Aligned_cols=118  Identities=11%  Similarity=0.149  Sum_probs=67.7

Q ss_pred             CCCcEEEEcCCCC-----cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----C
Q 025039           58 PNSSVLELGCGNS-----RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----S  122 (259)
Q Consensus        58 ~~~~vLDiGcG~G-----~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~  122 (259)
                      .++++|-.|++.|     .++..|++.|. +|+.++.++...+.+++.....+  .+.++..|+.+..     +     .
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEKK  106 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHHh
Confidence            4678999998743     25566677787 89999998766665555444333  5778888887632     0     1


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhH--------HHHHHHHHHHHhcccCCcEEEEEec
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETV--------TKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .+..|+++.+..+..........+...++..        .....+++.+.+.++.+|.++.+..
T Consensus       107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence            1468999876543210000000000001111        1122356667777888898887653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=92.19  E-value=1.8  Score=30.78  Aligned_cols=67  Identities=19%  Similarity=0.277  Sum_probs=41.3

Q ss_pred             CCcEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEec
Q 025039           59 NSSVLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEK  132 (259)
Q Consensus        59 ~~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~  132 (259)
                      +.+|+-+|+|. |. ++..|.+.|. +|+++|.+++.++.+++..      .+.+..+|..+..    .....+|+|+..
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~------~~~~~~~d~~~~~~l~~~~~~~~d~vi~~   76 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI------DALVINGDCTKIKTLEDAGIEDADMYIAV   76 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhc------CcEEEEcCCCCHHHHHHcCcccCCEEEEe
Confidence            35789998865 33 3344555676 8999999988776655431      3455666654321    112468988864

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.18  E-value=0.64  Score=40.86  Aligned_cols=94  Identities=16%  Similarity=0.211  Sum_probs=61.9

Q ss_pred             CCcEEEEcCCC-Ccc-hHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEec
Q 025039           59 NSSVLELGCGN-SRL-SEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEK  132 (259)
Q Consensus        59 ~~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~  132 (259)
                      ..+|+-+|+|. |.. +..|.+.|. .|+++|.+++.++.+++.       .+.++.+|..+..    ..-..+|+|++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~-------g~~vi~GDat~~~~L~~agi~~A~~viv~   75 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKF-------GMKVFYGDATRMDLLESAGAAKAEVLINA   75 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHT-------TCCCEESCTTCHHHHHHTTTTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhC-------CCeEEEcCCCCHHHHHhcCCCccCEEEEC
Confidence            46799999976 443 334445576 899999999999888742       3567888887632    223568888753


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      -.                 + ......+-...+.+.|+..++....
T Consensus        76 ~~-----------------~-~~~n~~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           76 ID-----------------D-PQTNLQLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             CS-----------------S-HHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             CC-----------------C-hHHHHHHHHHHHHhCCCCeEEEEEC
Confidence            21                 1 2334445556677788878877543

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.17  E-value=0.097  Score=44.51  Aligned_cols=68  Identities=21%  Similarity=0.300  Sum_probs=44.6

Q ss_pred             CeEEEEcccCC-Cc-CCCCceeEEEecceeeeeeeCCCCCCCCC--chhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          108 EVKVLEADMLD-LP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQ--PETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       108 ~v~~~~~d~~~-~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ...++++|..+ +. +++++||+|++.+++.....   ..|...  .+-.......+.++.++|+|||.+++..-
T Consensus        14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~---~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~   85 (323)
T 1boo_A           14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRK---KEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG   85 (323)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCS---CSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcc---cccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence            46788898765 33 55789999999988743210   001000  01123567888999999999999998643

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=92.17  E-value=0.55  Score=39.64  Aligned_cols=91  Identities=15%  Similarity=0.245  Sum_probs=59.3

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .+|.-||+|.  +.++..+.+.|.. +|+++|.+++.++.+.+.    |.  +.....+..+.  .-...|+|+..-+. 
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~----G~--~~~~~~~~~~~--~~~~aDvVilavp~-  104 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI--IDEGTTSIAKV--EDFSPDFVMLSSPV-  104 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS--CSEEESCTTGG--GGGCCSEEEECSCG-
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC----CC--cchhcCCHHHH--hhccCCEEEEeCCH-
Confidence            6899999997  4566677777865 899999999888776542    32  11112233220  11357998854322 


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                                       ....++++++...++|+.+++-+
T Consensus       105 -----------------~~~~~vl~~l~~~l~~~~iv~d~  127 (314)
T 3ggo_A          105 -----------------RTFREIAKKLSYILSEDATVTDQ  127 (314)
T ss_dssp             -----------------GGHHHHHHHHHHHSCTTCEEEEC
T ss_pred             -----------------HHHHHHHHHHhhccCCCcEEEEC
Confidence                             23457788888899998866543

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=92.08  E-value=0.37  Score=41.20  Aligned_cols=95  Identities=13%  Similarity=0.159  Sum_probs=60.9

Q ss_pred             cCCCC--CcEEEEcC-C-CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-------CC
Q 025039           55 HIKPN--SSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-------FS  122 (259)
Q Consensus        55 ~~~~~--~~vLDiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------~~  122 (259)
                      .+.++  .+||-.|+ | .|..+..++.. |..+|++++.+++.++.+++.+   +. . .++  |..+..       ..
T Consensus       155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~---g~-~-~~~--d~~~~~~~~~~~~~~  227 (357)
T 2zb4_A          155 HITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL---GF-D-AAI--NYKKDNVAEQLRESC  227 (357)
T ss_dssp             CCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS---CC-S-EEE--ETTTSCHHHHHHHHC
T ss_pred             CCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc---CC-c-eEE--ecCchHHHHHHHHhc
Confidence            45678  99999998 3 36666666654 4438999999988777776532   32 1 112  221110       11


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .+.+|+++.+..                      ...+..+.++|+++|.++++..
T Consensus       228 ~~~~d~vi~~~G----------------------~~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          228 PAGVDVYFDNVG----------------------GNISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             TTCEEEEEESCC----------------------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCCCEEEECCC----------------------HHHHHHHHHHhccCcEEEEECC
Confidence            126899885421                      1467888899999999997643

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=91.93  E-value=1.5  Score=35.82  Aligned_cols=112  Identities=19%  Similarity=0.236  Sum_probs=69.2

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCC------------HHHHHHHHHHHhhcCCCCeEEEEcccCCCc--
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLS------------AVAVEKMQERLLLKGYKEVKVLEADMLDLP--  120 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s------------~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--  120 (259)
                      .++++|-.|++.|.   ++..|++.|. +|+.+|.+            ...++.+...+...+ .++.++..|+.+..  
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v   86 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG-RKAYTAEVDVRDRAAV   86 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT-SCEEEEECCTTCHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcC-CceEEEEccCCCHHHH
Confidence            46788888887653   5556677787 89999987            666776666655544 36788888887632  


Q ss_pred             ---C-----CCCceeEEEecceeeeeeeCCCCCCCCCchhHH--------HHHHHHHHHHhcccCCcEEEEEe
Q 025039          121 ---F-----SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVT--------KVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       121 ---~-----~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                         +     ..+..|+++.+..+...    .  .....+...        ....+++.+.+.|+.+|.++.+.
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~~~~----~--~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           87 SRELANAVAEFGKLDVVVANAGICPL----G--AHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCC----C--TTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCcc----c--CcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence               0     11368999877543211    0  000111111        12235666777888888888764

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.87  E-value=0.98  Score=36.55  Aligned_cols=111  Identities=13%  Similarity=0.174  Sum_probs=67.7

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      .++++|-.|++.|.   ++..|++.|. +|+.++.++..++...+.+.    .++.++..|+.+..          ...+
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFG----PRVHALRSDIADLNEIAVLGAAAGQTLG   81 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG----GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----CcceEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46788888887653   5556677788 89999999988777766542    35788888887632          0114


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHH--------HHHHHHHHHHhcccCCcEEEEEe
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVT--------KVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ..|+++.+......    .......++...        ....+++.+.+.++.+|.++.+.
T Consensus        82 ~id~lv~nAg~~~~----~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  138 (255)
T 4eso_A           82 AIDLLHINAGVSEL----EPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS  138 (255)
T ss_dssp             SEEEEEECCCCCCC----BCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCEEEECCCCCCC----CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence            68998876443211    000000011111        11235566777778888888764

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=91.82  E-value=1  Score=36.80  Aligned_cols=76  Identities=22%  Similarity=0.310  Sum_probs=56.1

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      .++.+|--|++.|.   .+..|++.|. +|+.+|.+++.++.+.+.+...+. ++..+..|+.+..          ..-+
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~G   85 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDELAIEAAFSKLDAEGI   85 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            57778888877763   5566777788 899999999998888877776663 5777788887621          1235


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+..+
T Consensus        86 ~iDiLVNNAG~   96 (255)
T 4g81_D           86 HVDILINNAGI   96 (255)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            78999987544

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=91.11  E-value=0.66  Score=39.30  Aligned_cols=100  Identities=14%  Similarity=0.192  Sum_probs=66.2

Q ss_pred             CCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------CC-C----------CeEEEEcccCC
Q 025039           59 NSSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------GY-K----------EVKVLEADMLD  118 (259)
Q Consensus        59 ~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~-~----------~v~~~~~d~~~  118 (259)
                      ..+|.-+|+|+ | ..+..++..|. +|+..|++++.++.+.+++...       +. .          .++. ..|+.+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~-~~~l~~   83 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS-CTNLAE   83 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE-ECCHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc-ccchHh
Confidence            46899999998 4 46667788888 8999999999988887655321       10 0          0111 112111


Q ss_pred             CcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          119 LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       119 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                         .-...|+|+-     ..           +++.+-.++++.++-++++|+.+|.-.+.+
T Consensus        84 ---a~~~ad~ViE-----av-----------~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs  125 (319)
T 3ado_A           84 ---AVEGVVHIQE-----CV-----------PENLDLKRKIFAQLDSIVDDRVVLSSSSSC  125 (319)
T ss_dssp             ---HTTTEEEEEE-----CC-----------CSCHHHHHHHHHHHHTTCCSSSEEEECCSS
T ss_pred             ---HhccCcEEee-----cc-----------ccHHHHHHHHHHHHHHHhhhcceeehhhhh
Confidence               0124677663     22           256678889999999999999988765544

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=90.78  E-value=0.94  Score=38.94  Aligned_cols=92  Identities=13%  Similarity=0.202  Sum_probs=57.7

Q ss_pred             CCCCcEEEEcCC--CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-----cCCCCceeE
Q 025039           57 KPNSSVLELGCG--NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSNDCFDV  128 (259)
Q Consensus        57 ~~~~~vLDiGcG--~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~  128 (259)
                      .++.+||-+|++  .|..+..+++. |. +|+++. +++.++.+++.    |.+  .++...-.++     ....+.+|+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~v~~~t~g~~d~  234 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKSR----GAE--EVFDYRAPNLAQTIRTYTKNNLRY  234 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHT----TCS--EEEETTSTTHHHHHHHHTTTCCCE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHHc----CCc--EEEECCCchHHHHHHHHccCCccE
Confidence            678999999993  48888888776 55 888885 77777766543    432  2222111111     012245999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcc-cCCcEEEEEe
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVL-KPDGLFISVS  177 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~  177 (259)
                      |+..-.-                     ...+..+.+.| +++|.++.+.
T Consensus       235 v~d~~g~---------------------~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          235 ALDCITN---------------------VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             EEESSCS---------------------HHHHHHHHHHSCTTCEEEEESS
T ss_pred             EEECCCc---------------------hHHHHHHHHHhhcCCCEEEEEe
Confidence            8853211                     24567777788 6999998764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=90.66  E-value=2.1  Score=35.37  Aligned_cols=92  Identities=17%  Similarity=0.266  Sum_probs=57.3

Q ss_pred             CcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE--------c---ccCCCcCCCCce
Q 025039           60 SSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE--------A---DMLDLPFSNDCF  126 (259)
Q Consensus        60 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~--------~---d~~~~~~~~~~f  126 (259)
                      .+|.-+|+|. | .++..|++.|. +|+++|.+++.++..++.    +   +....        .   +..+....-...
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~----g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKN----G---LIADFNGEEVVANLPIFSPEEIDHQNEQV   75 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHH----C---EEEEETTEEEEECCCEECGGGCCTTSCCC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhC----C---EEEEeCCCeeEecceeecchhhcccCCCC
Confidence            4789999987 4 45556677777 899999999887776654    2   11111        0   111111001258


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      |+|+..-                  ......++++.+...++|+..++.+.
T Consensus        76 d~vi~~v------------------~~~~~~~v~~~l~~~l~~~~~iv~~~  108 (316)
T 2ew2_A           76 DLIIALT------------------KAQQLDAMFKAIQPMITEKTYVLCLL  108 (316)
T ss_dssp             SEEEECS------------------CHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred             CEEEEEe------------------ccccHHHHHHHHHHhcCCCCEEEEec
Confidence            9888532                  12356788888999999888776553

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=90.62  E-value=0.25  Score=46.44  Aligned_cols=104  Identities=18%  Similarity=0.281  Sum_probs=61.9

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcC------------CC-eEEEeeC---CHHHHHHHHHH-----------Hhhc-----C
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDG------------IT-AITCIDL---SAVAVEKMQER-----------LLLK-----G  105 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~------------~~-~v~~vD~---s~~~~~~a~~~-----------~~~~-----~  105 (259)
                      +..+|+|+|-|+|...+.+.+..            .. +++.+|.   +.+.+..+-+.           +...     +
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            45689999999999877665531            11 6899998   44444433211           1111     1


Q ss_pred             -----CC----CeEEEEcccCC-Cc-CC---CCceeEEEecceeeeeeeCCC--CCCCCCchhHHHHHHHHHHHHhcccC
Q 025039          106 -----YK----EVKVLEADMLD-LP-FS---NDCFDVVIEKATMEVLFVNSG--DPWNPQPETVTKVMAMLEGVHRVLKP  169 (259)
Q Consensus       106 -----~~----~v~~~~~d~~~-~~-~~---~~~fD~V~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~Lkp  169 (259)
                           ++    .+++..+|+.+ ++ +.   ...+|.++..+    + ....  ..|.         .+++..+.++++|
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~----f-~p~~np~~w~---------~~~~~~l~~~~~~  203 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDG----F-APAKNPDMWN---------EQLFNAMARMTRP  203 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECS----S-CC--CCTTCS---------HHHHHHHHHHEEE
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECC----C-CCCCChhhhh---------HHHHHHHHHHhCC
Confidence                 01    24566677754 22 21   35799988543    1 1111  1232         5789999999999


Q ss_pred             CcEEEE
Q 025039          170 DGLFIS  175 (259)
Q Consensus       170 gG~l~~  175 (259)
                      ||.+..
T Consensus       204 g~~~~t  209 (689)
T 3pvc_A          204 GGTFST  209 (689)
T ss_dssp             EEEEEE
T ss_pred             CCEEEe
Confidence            998775

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=90.50  E-value=1.1  Score=36.34  Aligned_cols=115  Identities=10%  Similarity=0.085  Sum_probs=67.3

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEe-eCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCI-DLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~  123 (259)
                      .++++|-.|++.|.   ++..|++.|. +|+.+ +.++...+.+.+.+...+ ..+.++..|+.+..     +     ..
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLG-RSALAIKADLTNAAEVEAAISAAADKF   84 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTT-SCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            46788888887753   5556677788 78877 667776666666655544 35788888887632     0     11


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHH--------HHHHHHHHHHhcccCCcEEEEEe
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVT--------KVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +..|+++.+.......   .......++...        ....+++.+.+.++++|.++.+.
T Consensus        85 g~id~lv~nAg~~~~~---~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  143 (259)
T 3edm_A           85 GEIHGLVHVAGGLIAR---KTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS  143 (259)
T ss_dssp             CSEEEEEECCCCCCCC---CCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCCEEEECCCccCCC---CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence            3689988765321110   000111111111        12245666777777788888764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=90.44  E-value=0.57  Score=34.79  Aligned_cols=97  Identities=12%  Similarity=0.155  Sum_probs=54.3

Q ss_pred             CCCCcEEEEcCCC-Ccc-hHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEE
Q 025039           57 KPNSSVLELGCGN-SRL-SEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~  130 (259)
                      .++.+|+-+|||. |.. +..|.+.|. +|+++|.+++.++.+++   ..   ...++.+|..+..    .....+|+|+
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~---~~---g~~~~~~d~~~~~~l~~~~~~~ad~Vi   89 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS---EF---SGFTVVGDAAEFETLKECGMEKADMVF   89 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT---TC---CSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh---cC---CCcEEEecCCCHHHHHHcCcccCCEEE
Confidence            3578999999976 543 344455676 89999999865443321   11   3455566654311    1124689888


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ..-.-                  ......+..+.+.+.+...++....
T Consensus        90 ~~~~~------------------~~~~~~~~~~~~~~~~~~~iv~~~~  119 (155)
T 2g1u_A           90 AFTND------------------DSTNFFISMNARYMFNVENVIARVY  119 (155)
T ss_dssp             ECSSC------------------HHHHHHHHHHHHHTSCCSEEEEECS
T ss_pred             EEeCC------------------cHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            53211                  2233444445555566666665443

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=90.27  E-value=2.5  Score=34.32  Aligned_cols=62  Identities=13%  Similarity=0.075  Sum_probs=43.8

Q ss_pred             CcEEEEcCCCCcchHHHH----hcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           60 SSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      .+||-.||  |.++..++    +.|. +|++++-++...+....       .+++++.+|+.++.  ...+|+|+...
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~--~~~~d~vi~~a   71 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA-------SGAEPLLWPGEEPS--LDGVTHLLIST   71 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH-------TTEEEEESSSSCCC--CTTCCEEEECC
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh-------CCCeEEEecccccc--cCCCCEEEECC
Confidence            57999996  66555554    4566 89999988765544332       25888899998865  45789988654

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=90.17  E-value=0.42  Score=40.88  Aligned_cols=95  Identities=12%  Similarity=0.179  Sum_probs=53.4

Q ss_pred             cCCCCCcEEEEcC-CC-CcchHHHHhc-CCCeEEEeeCCHH---HHHHHHHHHhhcCCCCeEEEEc------ccCCCcCC
Q 025039           55 HIKPNSSVLELGC-GN-SRLSEGLYND-GITAITCIDLSAV---AVEKMQERLLLKGYKEVKVLEA------DMLDLPFS  122 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G~-G~~~~~l~~~-~~~~v~~vD~s~~---~~~~a~~~~~~~~~~~v~~~~~------d~~~~~~~  122 (259)
                      .+.++.+||-.|+ |. |..++.+++. |...+..++.++.   ..+.++    ..|.+.  ++..      ++.+....
T Consensus       164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~lGa~~--vi~~~~~~~~~~~~~~~~  237 (357)
T 1zsy_A          164 QLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK----SLGAEH--VITEEELRRPEMKNFFKD  237 (357)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH----HTTCSE--EEEHHHHHSGGGGGTTSS
T ss_pred             ccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH----hcCCcE--EEecCcchHHHHHHHHhC
Confidence            4678899999997 44 8888888775 5524445555432   234443    334322  2221      11121111


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ...+|+|+..-.                 . .    .+....++|+++|.++.+.
T Consensus       238 ~~~~Dvvid~~g-----------------~-~----~~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          238 MPQPRLALNCVG-----------------G-K----SSTELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SCCCSEEEESSC-----------------H-H----HHHHHHTTSCTTCEEEECC
T ss_pred             CCCceEEEECCC-----------------c-H----HHHHHHHhhCCCCEEEEEe
Confidence            124899885321                 0 1    1235679999999998864

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=89.97  E-value=2.3  Score=34.59  Aligned_cols=115  Identities=17%  Similarity=0.212  Sum_probs=67.4

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeC-CHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDL-SAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~  123 (259)
                      .++++|-.|++.|.   ++..|++.|. +|+.++. ++...+...+.+...+ .++.++..|+.+..     +     ..
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   94 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALG-SDAIAIKADIRQVPEIVKLFDQAVAHF   94 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46788888877653   4556677787 8888765 4556666666555544 36788888987632     0     11


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHH--------HHHHHHHHHHhcccCCcEEEEEec
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVT--------KVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +..|+++.+......    +......++...        ....+++.+.+.|+.+|.++.+..
T Consensus        95 g~id~lvnnAg~~~~----~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           95 GHLDIAVSNSGVVSF----GHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             SCCCEEECCCCCCCC----CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             CCCCEEEECCCCCCC----CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            368998876443211    100000111111        122356677788888998887654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=89.94  E-value=2.1  Score=33.53  Aligned_cols=91  Identities=13%  Similarity=0.119  Sum_probs=56.1

Q ss_pred             cEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEecce
Q 025039           61 SVLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEKAT  134 (259)
Q Consensus        61 ~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~~~  134 (259)
                      +|+-+|+|. |. ++..|.+.|. .++++|.+++.++...+..      ++.++.+|..+..    ..-..+|+|++...
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~------~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   74 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKL------KATIIHGDGSHKEILRDAEVSKNDVVVILTP   74 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHS------SSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHc------CCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence            577888765 32 3444455676 8999999998887655431      4677888887632    12246888886321


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                                        .......+..+.+.+.|...++..
T Consensus        75 ------------------~d~~n~~~~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           75 ------------------RDEVNLFIAQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             ------------------CHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred             ------------------CcHHHHHHHHHHHHHcCCCeEEEE
Confidence                              123344555556666666666653

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=89.93  E-value=2.2  Score=34.40  Aligned_cols=118  Identities=15%  Similarity=0.147  Sum_probs=65.6

Q ss_pred             CCCCcEEEEcCC-CCc----chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------C
Q 025039           57 KPNSSVLELGCG-NSR----LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------F  121 (259)
Q Consensus        57 ~~~~~vLDiGcG-~G~----~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~  121 (259)
                      .++++||-.|++ +|.    ++..|++.|. +|+.++.+....+.+++.....+  .+.++..|+.+..          .
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDALFASLKT   88 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHHHHHHHHH
Confidence            357889999975 233    4445566687 89999888655555554444333  4677888887632          0


Q ss_pred             CCCceeEEEecceeeeeeeCCCCCCC-CCchhHH--------HHHHHHHHHHhcccCCcEEEEEe
Q 025039          122 SNDCFDVVIEKATMEVLFVNSGDPWN-PQPETVT--------KVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       122 ~~~~fD~V~~~~~l~~~~~~~~~~~~-~~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ..+..|+++.+..+.......+..+. ..++...        ....+++.+.+.++++|.++.+.
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  153 (271)
T 3ek2_A           89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS  153 (271)
T ss_dssp             HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence            12468999876543211000011111 1111111        11235566777777788888764

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=89.88  E-value=0.19  Score=43.46  Aligned_cols=101  Identities=17%  Similarity=0.233  Sum_probs=55.4

Q ss_pred             CCCcEEEEcCCC-CcchHHH-HhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           58 PNSSVLELGCGN-SRLSEGL-YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        58 ~~~~vLDiGcG~-G~~~~~l-~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      ++.+|+-+|+|. |..+..+ ...|. +|+++|.++..++.+++.+   +. .+.....+..++...-..+|+|+.....
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~---g~-~~~~~~~~~~~l~~~~~~~DvVi~~~g~  239 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVF---GG-RVITLTATEANIKKSVQHADLLIGAVLV  239 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---TT-SEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhc---Cc-eEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence            458999999965 5444433 34466 9999999998877766533   21 2222211111111001358998864332


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ...               ....-+.+...+.|++||.++.+..
T Consensus       240 ~~~---------------~~~~li~~~~l~~mk~gg~iV~v~~  267 (369)
T 2eez_A          240 PGA---------------KAPKLVTRDMLSLMKEGAVIVDVAV  267 (369)
T ss_dssp             ---------------------CCSCHHHHTTSCTTCEEEECC-
T ss_pred             Ccc---------------ccchhHHHHHHHhhcCCCEEEEEec
Confidence            110               0111124667788999999886543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=89.88  E-value=0.95  Score=37.71  Aligned_cols=90  Identities=18%  Similarity=0.262  Sum_probs=56.6

Q ss_pred             CCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           59 NSSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        59 ~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ..+|.-||+|. | .++..|++.|. +|++.|.+++.++.+.+.    +.   .....+..+..   ...|+|+..-+  
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~----g~---~~~~~~~~e~~---~~aDvvi~~vp--   73 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAE----GA---CGAAASAREFA---GVVDALVILVV--   73 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----TC---SEEESSSTTTT---TTCSEEEECCS--
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHc----CC---ccccCCHHHHH---hcCCEEEEECC--
Confidence            35799999987 4 45666777787 899999999887776653    32   11123333321   34688885321  


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHH---HHHHhcccCCcEEEEE
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAML---EGVHRVLKPDGLFISV  176 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~LkpgG~l~~~  176 (259)
                                     .......++   +.+...++||..++-.
T Consensus        74 ---------------~~~~~~~v~~~~~~l~~~l~~g~ivv~~  101 (303)
T 3g0o_A           74 ---------------NAAQVRQVLFGEDGVAHLMKPGSAVMVS  101 (303)
T ss_dssp             ---------------SHHHHHHHHC--CCCGGGSCTTCEEEEC
T ss_pred             ---------------CHHHHHHHHhChhhHHhhCCCCCEEEec
Confidence                           123344555   6667788888776644

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=89.83  E-value=2.3  Score=37.81  Aligned_cols=95  Identities=15%  Similarity=0.277  Sum_probs=60.9

Q ss_pred             CcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh-------cC------CCC--eEEEEcccCCCcCC
Q 025039           60 SSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-------KG------YKE--VKVLEADMLDLPFS  122 (259)
Q Consensus        60 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~------~~~--v~~~~~d~~~~~~~  122 (259)
                      .+|.-||+|. | .++..++..|. +|+++|.+++.++.+++....       .+      ...  ..+ ..|...    
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~----  111 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE----  111 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGG----
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHH----
Confidence            5799999998 4 46667777787 899999999988887653221       00      001  222 333311    


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      -...|+|+..-+                +.......++.++...++|+.+++..
T Consensus       112 ~~~aDlVIeaVp----------------e~~~~k~~v~~~l~~~~~~~~ii~sn  149 (463)
T 1zcj_A          112 LSTVDLVVEAVF----------------EDMNLKKKVFAELSALCKPGAFLCTN  149 (463)
T ss_dssp             GTTCSEEEECCC----------------SCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             HCCCCEEEEcCC----------------CCHHHHHHHHHHHHhhCCCCeEEEeC
Confidence            135788885321                23344567888898999988877653

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=89.72  E-value=0.099  Score=44.94  Aligned_cols=95  Identities=12%  Similarity=0.185  Sum_probs=54.9

Q ss_pred             cCCCC-CcEEEEcC-CC-CcchHHHHhc-CCCeEEEeeCCHHH----HHHHHHHHhhcCCCCeEEEEc------ccCC-C
Q 025039           55 HIKPN-SSVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVA----VEKMQERLLLKGYKEVKVLEA------DMLD-L  119 (259)
Q Consensus        55 ~~~~~-~~vLDiGc-G~-G~~~~~l~~~-~~~~v~~vD~s~~~----~~~a~~~~~~~~~~~v~~~~~------d~~~-~  119 (259)
                      .++++ .+||-.|+ |. |..+..+++. |. +++++.-++..    .+.++    ..|.+.  ++..      ++.+ +
T Consensus       163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~----~lGa~~--vi~~~~~~~~~~~~~i  235 (364)
T 1gu7_A          163 KLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLK----ELGATQ--VITEDQNNSREFGPTI  235 (364)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHH----HHTCSE--EEEHHHHHCGGGHHHH
T ss_pred             ccCCCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHH----hcCCeE--EEecCccchHHHHHHH
Confidence            46678 99999997 54 7788877775 55 77777644432    33333    334322  2221      2111 1


Q ss_pred             c-C---CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          120 P-F---SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       120 ~-~---~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      . .   ....+|+|+....                    . .... ...++|+++|.++.+..
T Consensus       236 ~~~t~~~~~g~Dvvid~~G--------------------~-~~~~-~~~~~l~~~G~~v~~g~  276 (364)
T 1gu7_A          236 KEWIKQSGGEAKLALNCVG--------------------G-KSST-GIARKLNNNGLMLTYGG  276 (364)
T ss_dssp             HHHHHHHTCCEEEEEESSC--------------------H-HHHH-HHHHTSCTTCEEEECCC
T ss_pred             HHHhhccCCCceEEEECCC--------------------c-hhHH-HHHHHhccCCEEEEecC
Confidence            0 1   1246999985321                    0 1223 56799999999988653

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=89.37  E-value=1.9  Score=35.15  Aligned_cols=86  Identities=16%  Similarity=0.234  Sum_probs=54.9

Q ss_pred             cEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeee
Q 025039           61 SVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL  138 (259)
Q Consensus        61 ~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~  138 (259)
                      +|.-+|||. | .++..+.+.|. +|+++|.+++.++.+.+    .+... .. ..+..+.    ...|+|+..-     
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~----~g~~~-~~-~~~~~~~----~~~D~vi~av-----   65 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVE----RQLVD-EA-GQDLSLL----QTAKIIFLCT-----   65 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTSCS-EE-ESCGGGG----TTCSEEEECS-----
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHh----CCCCc-cc-cCCHHHh----CCCCEEEEEC-----
Confidence            578899987 3 35556666777 89999999987776643    23211 11 2233222    3579988532     


Q ss_pred             eeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          139 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                                   .......+++.+...++++..++-
T Consensus        66 -------------~~~~~~~~~~~l~~~~~~~~~vv~   89 (279)
T 2f1k_A           66 -------------PIQLILPTLEKLIPHLSPTAIVTD   89 (279)
T ss_dssp             -------------CHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             -------------CHHHHHHHHHHHHhhCCCCCEEEE
Confidence                         224556788888888988876653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=89.29  E-value=1.4  Score=36.40  Aligned_cols=96  Identities=19%  Similarity=0.257  Sum_probs=61.0

Q ss_pred             CcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc---------CC---------CCeEEEEcccCCC
Q 025039           60 SSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK---------GY---------KEVKVLEADMLDL  119 (259)
Q Consensus        60 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------~~---------~~v~~~~~d~~~~  119 (259)
                      .+|.-+|+|. | .++..++..|. +|+++|.+++.++.+.+.+...         ++         .++.. ..|..+.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~   82 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQA   82 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHH
Confidence            4788899987 3 45666677788 8999999999988887653211         00         01222 2222211


Q ss_pred             cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          120 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       120 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                         -...|+|+..-+                +..+....+++++...++|+.+++-.
T Consensus        83 ---~~~aDlVi~av~----------------~~~~~~~~v~~~l~~~~~~~~il~s~  120 (283)
T 4e12_A           83 ---VKDADLVIEAVP----------------ESLDLKRDIYTKLGELAPAKTIFATN  120 (283)
T ss_dssp             ---TTTCSEEEECCC----------------SCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             ---hccCCEEEEecc----------------CcHHHHHHHHHHHHhhCCCCcEEEEC
Confidence               135798885322                23346678889999999998876543

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=89.10  E-value=1.5  Score=35.34  Aligned_cols=114  Identities=15%  Similarity=0.126  Sum_probs=64.3

Q ss_pred             CCCcEEEEcCCCC---cchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----CC-----C
Q 025039           58 PNSSVLELGCGNS---RLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FS-----N  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G---~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~  123 (259)
                      ++++||-.|++.|   .++..|++ .|. +|++++.++...+.+.+.+...+ .++.++..|+.+..     +.     .
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRALRDFLRKEY   80 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcC-CeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence            3567777765543   23344555 676 89999999887777666655444 35788888887632     00     1


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhH--------HHHHHHHHHHHhcccCCcEEEEEe
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETV--------TKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +.+|+|+.+......    .....+.++..        .....+++.+.+.++++|.++++.
T Consensus        81 g~id~li~~Ag~~~~----~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s  138 (276)
T 1wma_A           81 GGLDVLVNNAGIAFK----VADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  138 (276)
T ss_dssp             SSEEEEEECCCCCCC----TTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCCEEEECCccccc----CCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence            368998876433211    00000000111        111235666777777778888764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=88.97  E-value=2.5  Score=34.89  Aligned_cols=118  Identities=13%  Similarity=0.157  Sum_probs=66.7

Q ss_pred             CCCcEEEEcCCC--Cc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----C
Q 025039           58 PNSSVLELGCGN--SR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----S  122 (259)
Q Consensus        58 ~~~~vLDiGcG~--G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~  122 (259)
                      .++++|-.|++.  |.   ++..|++.|. +|+.++.++...+.+.+.....+  .+.++..|+.+..     +     .
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            467899999864  32   5566677788 89999998765555555444333  4677888887632     0     1


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhH--------HHHHHHHHHHHhcccCCcEEEEEec
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETV--------TKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      -+..|+++.+..+..........+....+..        .....+++.+.+.++.+|.++.+..
T Consensus       106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS  169 (296)
T 3k31_A          106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY  169 (296)
T ss_dssp             HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence            1468999876543210000000000000111        1122356667778888898887653

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=88.77  E-value=3.8  Score=33.33  Aligned_cols=114  Identities=13%  Similarity=0.164  Sum_probs=67.1

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCC-HHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLS-AVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~  123 (259)
                      .++++|-.|++.|.   ++..|++.|. +|+.++.. ....+...+.+...+ ..+.++..|+.+..     +     ..
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAG-GRAVAIRADNRDAEAIEQAIRETVEAL  107 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            56789999887753   5556677788 78888654 455665555555444 35778888887632     0     11


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhH--------HHHHHHHHHHHhcccCCcEEEEEe
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETV--------TKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +..|+++.+..+...    .......++..        .....+++.+.+.|+++|.++.+.
T Consensus       108 g~iD~lvnnAg~~~~----~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is  165 (271)
T 3v2g_A          108 GGLDILVNSAGIWHS----APLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG  165 (271)
T ss_dssp             SCCCEEEECCCCCCC----CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             CCCcEEEECCCCCCC----CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            368998876543211    00000011111        112235666778888889888764

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=88.74  E-value=2.1  Score=35.38  Aligned_cols=115  Identities=12%  Similarity=0.116  Sum_probs=66.6

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCC--HHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----C
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLS--AVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----S  122 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~  122 (259)
                      .++++|-.|++.|.   ++..|++.|. +|+.++.+  +...+.+.+.+...+ .++.++..|+.+..     +     .
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~  125 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECG-RKAVLLPGDLSDESFARSLVHKAREA  125 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTT-CCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcC-CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            46788888887653   4556667788 89988876  344555555554444 35777888887632     0     1


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhH--------HHHHHHHHHHHhcccCCcEEEEEe
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETV--------TKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .+..|+++.+.........   .....++..        .....+++.+.+.++.+|.++.+.
T Consensus       126 ~g~iD~lv~nAg~~~~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is  185 (294)
T 3r3s_A          126 LGGLDILALVAGKQTAIPE---IKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS  185 (294)
T ss_dssp             HTCCCEEEECCCCCCCCSS---GGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             cCCCCEEEECCCCcCCCCC---cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence            1468998876543211000   000001111        112245667778888889988764

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=88.41  E-value=0.81  Score=42.76  Aligned_cols=105  Identities=13%  Similarity=0.197  Sum_probs=62.2

Q ss_pred             CCCcEEEEcCCCCcchHHHHhc------------CCC-eEEEeeC---CHHHHHHHHHH-----------HhhcC--CC-
Q 025039           58 PNSSVLELGCGNSRLSEGLYND------------GIT-AITCIDL---SAVAVEKMQER-----------LLLKG--YK-  107 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~------------~~~-~v~~vD~---s~~~~~~a~~~-----------~~~~~--~~-  107 (259)
                      +.-+|||+|-|+|.......+.            ... +++++|.   +++.+..+-..           +....  ++ 
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            3468999999999877765443            112 6899998   77766644331           11111  00 


Q ss_pred             -----------CeEEEEcccCC-Cc-CC---CCceeEEEecceeeeeeeCCC--CCCCCCchhHHHHHHHHHHHHhcccC
Q 025039          108 -----------EVKVLEADMLD-LP-FS---NDCFDVVIEKATMEVLFVNSG--DPWNPQPETVTKVMAMLEGVHRVLKP  169 (259)
Q Consensus       108 -----------~v~~~~~d~~~-~~-~~---~~~fD~V~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~Lkp  169 (259)
                                 .+++..+|+.+ ++ +.   ...||+|+..+    + ....  ..|         -.+++..+.++++|
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~----f-~p~~np~~w---------~~~~~~~l~~~~~~  211 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDG----F-APAKNPDMW---------TQNLFNAMARLARP  211 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECC----S-CGGGCGGGS---------CHHHHHHHHHHEEE
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECC----C-CCcCChhhh---------hHHHHHHHHHHhCC
Confidence                       13345566644 22 11   35799988533    2 1111  112         25789999999999


Q ss_pred             CcEEEEE
Q 025039          170 DGLFISV  176 (259)
Q Consensus       170 gG~l~~~  176 (259)
                      ||.+...
T Consensus       212 g~~~~t~  218 (676)
T 3ps9_A          212 GGTLATF  218 (676)
T ss_dssp             EEEEEES
T ss_pred             CCEEEec
Confidence            9998753

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=88.21  E-value=2  Score=36.00  Aligned_cols=101  Identities=16%  Similarity=0.118  Sum_probs=59.9

Q ss_pred             CCCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE-ccc-CCCcCCCCceeEEEecc
Q 025039           58 PNSSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADM-LDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~-~~~~~~~~~fD~V~~~~  133 (259)
                      ...+|.-+|+|. | .++..|++.|. +|+.+ .+++.++..++.-.....+...+.. ... .+.. ....+|+|+..-
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vilav   94 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPS-AVQGADLVLFCV   94 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGG-GGTTCSEEEECC
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHH-HcCCCCEEEEEc
Confidence            457899999997 4 56667777787 89999 8888887776541100001111110 000 0111 124689887532


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .-                  .....+++.+...++|+..++...-+
T Consensus        95 k~------------------~~~~~~l~~l~~~l~~~~~iv~~~nG  122 (318)
T 3hwr_A           95 KS------------------TDTQSAALAMKPALAKSALVLSLQNG  122 (318)
T ss_dssp             CG------------------GGHHHHHHHHTTTSCTTCEEEEECSS
T ss_pred             cc------------------ccHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            21                  24578889999999999887766444

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=88.19  E-value=3.7  Score=33.75  Aligned_cols=115  Identities=13%  Similarity=0.152  Sum_probs=66.2

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHH-HHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAV-AVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~-~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~  123 (259)
                      .++++|-.|++.|.   ++..|++.|. +|+.++.++. ..+.+.+.+...+ .++.++..|+.+..     +     ..
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~  123 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEG-VKCVLLPGDLSDEQHCKDIVQETVRQL  123 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTT-CCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            46788988887653   5556677787 8999988754 4444444444444 35788888987632     0     11


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhH--------HHHHHHHHHHHhcccCCcEEEEEe
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETV--------TKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +..|+++.+.......   ........+..        .....+++.+.+.|+.+|.++.+.
T Consensus       124 g~iD~lvnnAg~~~~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          124 GSLNILVNNVAQQYPQ---QGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             SSCCEEEECCCCCCCC---SSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             CCCCEEEECCCCcCCC---CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence            3689988764321110   00000000111        112245667778888889888764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=88.13  E-value=2.8  Score=34.45  Aligned_cols=85  Identities=18%  Similarity=0.291  Sum_probs=55.4

Q ss_pred             CcEEEEcC-CC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           60 SSVLELGC-GN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        60 ~~vLDiGc-G~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .+|.-+|+ |. | .++..+++.|. +|+++|.+++.++.+.+    .++   ..  .+..+.   -...|+|+..-.  
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~----~g~---~~--~~~~~~---~~~aDvVi~av~--   76 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQG----MGI---PL--TDGDGW---IDEADVVVLALP--   76 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHH----TTC---CC--CCSSGG---GGTCSEEEECSC--
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHh----cCC---Cc--CCHHHH---hcCCCEEEEcCC--
Confidence            47999999 87 4 45566677777 89999999887776654    232   11  122221   135799885321  


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                                      .....++++.+...++++..++-
T Consensus        77 ----------------~~~~~~v~~~l~~~l~~~~ivv~   99 (286)
T 3c24_A           77 ----------------DNIIEKVAEDIVPRVRPGTIVLI   99 (286)
T ss_dssp             ----------------HHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             ----------------chHHHHHHHHHHHhCCCCCEEEE
Confidence                            23467888888888888775553

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=88.11  E-value=0.68  Score=39.44  Aligned_cols=94  Identities=16%  Similarity=0.210  Sum_probs=53.7

Q ss_pred             cCCCCCcEEEEcC-CC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcc--cCC-C-cCCCCcee
Q 025039           55 HIKPNSSVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD--MLD-L-PFSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d--~~~-~-~~~~~~fD  127 (259)
                      .++++.+||-.|+ |. |..+..+++. |..+|++++ ++...+.++     .+.+  .++..+  +.+ + ....+.+|
T Consensus       139 ~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~--~~~~~~~~~~~~~~~~~~~g~D  210 (349)
T 4a27_A          139 NLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVT--HLFDRNADYVQEVKRISAEGVD  210 (349)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSS--EEEETTSCHHHHHHHHCTTCEE
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCc--EEEcCCccHHHHHHHhcCCCce
Confidence            4678899999998 43 7777788775 333899888 554444443     2332  222211  111 0 01235799


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+....-                      ..+....++|+++|.++++..
T Consensus       211 vv~d~~g~----------------------~~~~~~~~~l~~~G~~v~~G~  239 (349)
T 4a27_A          211 IVLDCLCG----------------------DNTGKGLSLLKPLGTYILYGS  239 (349)
T ss_dssp             EEEEECC-----------------------------CTTEEEEEEEEEEC-
T ss_pred             EEEECCCc----------------------hhHHHHHHHhhcCCEEEEECC
Confidence            98853210                      123678899999999998754

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=88.08  E-value=1.8  Score=35.26  Aligned_cols=75  Identities=20%  Similarity=0.249  Sum_probs=56.7

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      +++.+|--|++.|.   .+..+++.|. +|+.+|.+++.++.+.+.+...+ .++..+..|+.+..          ..-+
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   83 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMG-KEVLGVKADVSKKKDVEEFVRRTFETYS   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            47788888888764   5566777788 89999999999998888887766 36778888987632          1125


Q ss_pred             ceeEEEecce
Q 025039          125 CFDVVIEKAT  134 (259)
Q Consensus       125 ~fD~V~~~~~  134 (259)
                      ..|+++.+..
T Consensus        84 ~iDiLVNNAG   93 (254)
T 4fn4_A           84 RIDVLCNNAG   93 (254)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            7899987754

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=88.07  E-value=2.3  Score=34.58  Aligned_cols=114  Identities=19%  Similarity=0.244  Sum_probs=66.2

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEe-eCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCI-DLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~  123 (259)
                      .++++|-.|++.|.   ++..|++.|. +|+.+ .-++...+...+.+...+ ..+.++..|+.+..     +     ..
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAG-GKALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46788888887753   5556677788 77776 445666666665555544 35778888887632     0     11


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhH--------HHHHHHHHHHHhcccCCcEEEEEe
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETV--------TKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +..|+++.+..+...    .......++..        .....+++.+.+.++++|.++.+.
T Consensus       104 g~iD~lvnnAG~~~~----~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  161 (267)
T 3u5t_A          104 GGVDVLVNNAGIMPL----TTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS  161 (267)
T ss_dssp             SCEEEEEECCCCCCC----CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCEEEECCCCCCC----CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            468998876543211    00000011111        112235666777788889888765

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=87.73  E-value=0.59  Score=39.80  Aligned_cols=92  Identities=12%  Similarity=0.191  Sum_probs=54.2

Q ss_pred             CC-CcEEEE-cCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc------CCCCcee
Q 025039           58 PN-SSVLEL-GCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDCFD  127 (259)
Q Consensus        58 ~~-~~vLDi-GcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD  127 (259)
                      ++ .+||-. |+|. |..+..+++. |. +|++++.+++.++.+++.    |.+  .++..+-.++.      .....+|
T Consensus       163 ~g~~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga~--~~~~~~~~~~~~~v~~~~~~~g~D  235 (349)
T 3pi7_A          163 EGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKDI----GAA--HVLNEKAPDFEATLREVMKAEQPR  235 (349)
T ss_dssp             HCCSEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHH----TCS--EEEETTSTTHHHHHHHHHHHHCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC--EEEECCcHHHHHHHHHHhcCCCCc
Confidence            44 455544 4443 6666666554 66 999999999888887653    322  22222111110      0113699


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+....-                      ..+..+.+.|+++|.++++..
T Consensus       236 ~vid~~g~----------------------~~~~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          236 IFLDAVTG----------------------PLASAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             EEEESSCH----------------------HHHHHHHHHSCTTCEEEECCC
T ss_pred             EEEECCCC----------------------hhHHHHHhhhcCCCEEEEEec
Confidence            98853211                      224667889999999998753

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=87.66  E-value=0.16  Score=43.93  Aligned_cols=102  Identities=13%  Similarity=0.184  Sum_probs=57.8

Q ss_pred             CCcEEEEcCCC-CcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           59 NSSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        59 ~~~vLDiGcG~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      +.+|+-+|+|. |..+..++. .|. +|+++|.+++.++.+++....    .+.....+..++...-..+|+|+......
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~DvVI~~~~~~  241 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS----RVELLYSNSAEIETAVAEADLLIGAVLVP  241 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG----GSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc----eeEeeeCCHHHHHHHHcCCCEEEECCCcC
Confidence            48999999976 555544443 476 999999999888887765432    22222211111110012589988543221


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ..         +.|      .-+.+...+.|+|||+++.+.+.+
T Consensus       242 ~~---------~~~------~li~~~~~~~~~~g~~ivdv~~~~  270 (361)
T 1pjc_A          242 GR---------RAP------ILVPASLVEQMRTGSVIVDVAVDQ  270 (361)
T ss_dssp             TS---------SCC------CCBCHHHHTTSCTTCEEEETTCTT
T ss_pred             CC---------CCC------eecCHHHHhhCCCCCEEEEEecCC
Confidence            00         000      001344567889999888765543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=87.60  E-value=0.7  Score=41.62  Aligned_cols=91  Identities=11%  Similarity=0.213  Sum_probs=56.7

Q ss_pred             CCCCCcEEEEcCCC-CcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      ..++.+|+-+|+|. |......++ .|. +|+++|.++...+.+++.    |+   .+  .++.+. .  ...|+|+...
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~----Ga---~~--~~l~e~-l--~~aDvVi~at  337 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMME----GF---DV--VTVEEA-I--GDADIVVTAT  337 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----TC---EE--CCHHHH-G--GGCSEEEECS
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC---EE--ecHHHH-H--hCCCEEEECC
Confidence            45789999999987 655544444 466 999999999877666532    32   22  222221 1  3589988642


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHH-HHHHhcccCCcEEEEEecCC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAML-EGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .-..                     ++ ....+.|||||+++.+....
T Consensus       338 gt~~---------------------~i~~~~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          338 GNKD---------------------IIMLEHIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             SSSC---------------------SBCHHHHHHSCTTCEEEECSSSG
T ss_pred             CCHH---------------------HHHHHHHHhcCCCcEEEEeCCCC
Confidence            1111                     12 24567799999998765543

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=87.54  E-value=2.8  Score=34.23  Aligned_cols=89  Identities=18%  Similarity=0.290  Sum_probs=54.9

Q ss_pred             cEEEEcCCC-C-cchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCC-ceeEEEecceee
Q 025039           61 SVLELGCGN-S-RLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSND-CFDVVIEKATME  136 (259)
Q Consensus        61 ~vLDiGcG~-G-~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~fD~V~~~~~l~  136 (259)
                      +|.-+|+|. | .++..+.+.|.. +|+++|.+++.++.+++    .+... .. ..+..+.   -. ..|+|+..-+  
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~-~~-~~~~~~~---~~~~aDvVilavp--   71 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID-EG-TTSIAKV---EDFSPDFVMLSSP--   71 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS-EE-ESCGGGG---GGTCCSEEEECSC--
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH----CCCcc-cc-cCCHHHH---hcCCCCEEEEcCC--
Confidence            688899987 4 345556666653 79999999988776653    23211 11 2222221   13 5799885322  


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                                      ......++.++...++++.+++.+
T Consensus        72 ----------------~~~~~~v~~~l~~~l~~~~iv~~~   95 (281)
T 2g5c_A           72 ----------------VRTFREIAKKLSYILSEDATVTDQ   95 (281)
T ss_dssp             ----------------HHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             ----------------HHHHHHHHHHHHhhCCCCcEEEEC
Confidence                            234557788888889988866543

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=87.46  E-value=1  Score=45.40  Aligned_cols=53  Identities=23%  Similarity=0.297  Sum_probs=42.4

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEccc
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM  116 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~  116 (259)
                      ..+++|+.||.|.+...+..+|. ..+.++|+++.+++.-+.++     +...+...|+
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI  904 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDC  904 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC-----TTSEEECSCH
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CCCcEeeccH
Confidence            46799999999999999999997 46889999999998887775     3444555543

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=87.41  E-value=2.8  Score=34.91  Aligned_cols=93  Identities=17%  Similarity=0.247  Sum_probs=59.7

Q ss_pred             CCcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           59 NSSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        59 ~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .++|--||+|.  +.++..++ .|. +|++.|.+++.++.+.+.+......++++ ..|...    -...|+|+..-+  
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~~~~~~~~~~l~~~~~~~i~~-~~~~~~----~~~aDlVieavp--   82 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSEKALEAAREQIPEELLSKIEF-TTTLEK----VKDCDIVMEAVF--   82 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHHSCGGGGGGEEE-ESSCTT----GGGCSEEEECCC--
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCHHHHHHHHHHHHHHHhCCeEE-eCCHHH----HcCCCEEEEcCc--
Confidence            56899999997  45777788 888 89999999999998887621111112332 233322    235799885322  


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                                    ++......++.++..+  ||.++...
T Consensus        83 --------------e~~~vk~~l~~~l~~~--~~~Ilasn  106 (293)
T 1zej_A           83 --------------EDLNTKVEVLREVERL--TNAPLCSN  106 (293)
T ss_dssp             --------------SCHHHHHHHHHHHHTT--CCSCEEEC
T ss_pred             --------------CCHHHHHHHHHHHhcC--CCCEEEEE
Confidence                          2334456677777665  77766543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=87.36  E-value=0.14  Score=44.42  Aligned_cols=101  Identities=13%  Similarity=0.215  Sum_probs=56.4

Q ss_pred             CCCcEEEEcCCC-CcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           58 PNSSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        58 ~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      ++.+|+-+|+|. |..+..++. .|. +|+++|.++..++.+++.+   +. .+.....+..++...-..+|+|+.....
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~---g~-~~~~~~~~~~~l~~~l~~aDvVi~~~~~  241 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEF---CG-RIHTRYSSAYELEGAVKRADLVIGAVLV  241 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---TT-SSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhc---CC-eeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence            578999999976 554444443 466 8999999998887776543   21 2222111111111001257998863211


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ...               ....-+.+...+.|+|||+++.+..
T Consensus       242 p~~---------------~t~~li~~~~l~~mk~g~~iV~va~  269 (377)
T 2vhw_A          242 PGA---------------KAPKLVSNSLVAHMKPGAVLVDIAI  269 (377)
T ss_dssp             TTS---------------CCCCCBCHHHHTTSCTTCEEEEGGG
T ss_pred             CCC---------------CCcceecHHHHhcCCCCcEEEEEec
Confidence            000               0000124566778999999887653

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=87.24  E-value=0.25  Score=40.50  Aligned_cols=67  Identities=12%  Similarity=0.202  Sum_probs=39.9

Q ss_pred             eEEEEcccCCC--cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          109 VKVLEADMLDL--PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       109 v~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ..++++|..+.  .+++++||+|++.+++..-..+.. .+....+-.......+..+.++|+|+|.+++.
T Consensus         5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d-~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWD-SFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGG-CCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeEEechHHHHHHhccccccCEEEECCCCCCCccccc-ccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            45677776542  144678999999888743200000 00000011124567788889999999999886

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=87.21  E-value=3.9  Score=33.05  Aligned_cols=76  Identities=12%  Similarity=0.079  Sum_probs=50.3

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCc------CCCCcee
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP------FSNDCFD  127 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~------~~~~~fD  127 (259)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.++..++.+.+.+...+. ..+.++..|+.+..      ..-+..|
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            45678888876652   4556666787 899999998887777666554431 23667778876522      1124689


Q ss_pred             EEEecce
Q 025039          128 VVIEKAT  134 (259)
Q Consensus       128 ~V~~~~~  134 (259)
                      +++.+..
T Consensus        88 ~lv~nAg   94 (267)
T 3t4x_A           88 ILINNLG   94 (267)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9887644

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=86.94  E-value=0.73  Score=40.69  Aligned_cols=45  Identities=29%  Similarity=0.502  Sum_probs=35.0

Q ss_pred             CCcEEEEcCCCCcchHHHHhc----C--CCeEEEeeCCHHHHHHHHHHHhh
Q 025039           59 NSSVLELGCGNSRLSEGLYND----G--ITAITCIDLSAVAVEKMQERLLL  103 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~----~--~~~v~~vD~s~~~~~~a~~~~~~  103 (259)
                      ...|+|+|+|+|.++.-+++.    +  ..+++.||+|+...+.=++++..
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            468999999999988776543    2  22799999999888777776653

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=86.69  E-value=6.2  Score=35.08  Aligned_cols=98  Identities=14%  Similarity=0.165  Sum_probs=60.7

Q ss_pred             CCcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHH-HHHHH---HHhhcCC----------CCeEEEEcccCCCcCC
Q 025039           59 NSSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAV-EKMQE---RLLLKGY----------KEVKVLEADMLDLPFS  122 (259)
Q Consensus        59 ~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~---~~~~~~~----------~~v~~~~~d~~~~~~~  122 (259)
                      -.+|.-||+|.  +.++..+++.|. +|++.|.+++.. +..++   ++...+.          .++++ ..|...    
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~-t~dl~a----  127 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI-TSDFHK----  127 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE-ESCGGG----
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE-eCCHHH----
Confidence            36799999997  557778888888 999999998721 11111   1112221          12333 233321    


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      -...|+|+..-+                ++......++.++...++|+.++...+.
T Consensus       128 l~~aDlVIeAVp----------------e~~~vk~~v~~~l~~~~~~~aIlasnTS  167 (460)
T 3k6j_A          128 LSNCDLIVESVI----------------EDMKLKKELFANLENICKSTCIFGTNTS  167 (460)
T ss_dssp             CTTCSEEEECCC----------------SCHHHHHHHHHHHHTTSCTTCEEEECCS
T ss_pred             HccCCEEEEcCC----------------CCHHHHHHHHHHHHhhCCCCCEEEecCC
Confidence            235798885321                2345567888999999999988865443

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=86.60  E-value=4.5  Score=38.34  Aligned_cols=98  Identities=16%  Similarity=0.300  Sum_probs=66.5

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-----------CC----CCeEEEEcccCCCcCC
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-----------GY----KEVKVLEADMLDLPFS  122 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~----~~v~~~~~d~~~~~~~  122 (259)
                      .+|--+|+|+  +.++..++..|. .|+..|++++.++.+++.+...           ..    ..+.+ ..+..++   
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l---  391 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL---  391 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE-ESCGGGG---
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc-cCcHHHH---
Confidence            5899999998  456667777888 9999999999998887654321           00    01111 1222221   


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                       ...|+|+-.     +           +++.+-.+++++++-.+++|+.+|.-.+.+
T Consensus       392 -~~aDlVIEA-----V-----------~E~l~iK~~vf~~le~~~~~~aIlASNTSs  431 (742)
T 3zwc_A          392 -STVDLVVEA-----V-----------FEDMNLKKKVFAELSALCKPGAFLCTNTSA  431 (742)
T ss_dssp             -GSCSEEEEC-----C-----------CSCHHHHHHHHHHHHHHSCTTCEEEECCSS
T ss_pred             -hhCCEEEEe-----c-----------cccHHHHHHHHHHHhhcCCCCceEEecCCc
Confidence             246777732     2           146678889999999999999988865543

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=86.40  E-value=2.6  Score=34.03  Aligned_cols=77  Identities=16%  Similarity=0.230  Sum_probs=54.7

Q ss_pred             CCCcEEEEcC-CCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CC
Q 025039           58 PNSSVLELGC-GNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN  123 (259)
Q Consensus        58 ~~~~vLDiGc-G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~  123 (259)
                      .++++|-.|+ |.|.   ++..|++.|. +|+.++.++..++.+.+.+...+-.++.++..|+.+..     +     ..
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   99 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA   99 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            4678888887 5543   5556777787 89999999988888777775554346888999987632     0     11


Q ss_pred             CceeEEEeccee
Q 025039          124 DCFDVVIEKATM  135 (259)
Q Consensus       124 ~~fD~V~~~~~l  135 (259)
                      +..|+++.+..+
T Consensus       100 g~id~li~~Ag~  111 (266)
T 3o38_A          100 GRLDVLVNNAGL  111 (266)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCcEEEECCCc
Confidence            368999876543

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=86.30  E-value=4.1  Score=32.86  Aligned_cols=91  Identities=13%  Similarity=0.361  Sum_probs=56.8

Q ss_pred             CCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           59 NSSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        59 ~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      +.+|.-+|||. | .++..+++.|...|+++|.+++.++.+.+..   +   +.. ..+..+..   ...|+|+..-+  
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~---g---~~~-~~~~~~~~---~~~Dvvi~av~--   77 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV---E---AEY-TTDLAEVN---PYAKLYIVSLK--   77 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT---T---CEE-ESCGGGSC---SCCSEEEECCC--
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc---C---Cce-eCCHHHHh---cCCCEEEEecC--
Confidence            35799999986 4 3455566667623899999998877665542   2   222 22332221   35799885321  


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                                      .....++++.+...+++|..++-..
T Consensus        78 ----------------~~~~~~v~~~l~~~~~~~~ivv~~s  102 (266)
T 3d1l_A           78 ----------------DSAFAELLQGIVEGKREEALMVHTA  102 (266)
T ss_dssp             ----------------HHHHHHHHHHHHTTCCTTCEEEECC
T ss_pred             ----------------HHHHHHHHHHHHhhcCCCcEEEECC
Confidence                            1244678888888888877666543

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=85.99  E-value=4.7  Score=32.88  Aligned_cols=114  Identities=15%  Similarity=0.200  Sum_probs=62.2

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHH-HHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAV-AVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~-~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~  123 (259)
                      .++++|-.|++.|.   ++..|++.|. +|++++.++. ..+.+.+.+...+ .++.++..|+.+..     +     ..
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~  105 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNG-SDAACVKANVGVVEDIVRMFEEAVKIF  105 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45678877776542   4445566677 8999988754 3444444444333 25777888886622     0     01


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHH--------HHHHHHHHHHhcccCCcEEEEEe
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVT--------KVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +..|+++.+..+...    +..+...++...        ....+++.+.+.|+.+|.++.+.
T Consensus       106 g~iD~lv~~Ag~~~~----~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  163 (283)
T 1g0o_A          106 GKLDIVCSNSGVVSF----GHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  163 (283)
T ss_dssp             SCCCEEEECCCCCCC----CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             CCCCEEEECCCcCCC----CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            368998876543211    000000111111        11234566677777788888764

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=85.96  E-value=0.7  Score=44.04  Aligned_cols=54  Identities=17%  Similarity=0.265  Sum_probs=43.0

Q ss_pred             CCcEEEEcCCCCcchHHHHhcC------CCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccC
Q 025039           59 NSSVLELGCGNSRLSEGLYNDG------ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADML  117 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~  117 (259)
                      ..+|+|+-||.|.++.-+.+.|      +..+.++|+++.+++.-+.|+     ++..+.+.|+.
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh-----p~~~~~~~di~  271 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH-----PQTEVRNEKAD  271 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC-----TTSEEEESCHH
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC-----CCCceecCcHH
Confidence            4679999999999999988876      446789999999999888775     34566666654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=85.81  E-value=0.53  Score=39.90  Aligned_cols=66  Identities=20%  Similarity=0.350  Sum_probs=43.3

Q ss_pred             eEEE-EcccCCC--cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          109 VKVL-EADMLDL--PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       109 v~~~-~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ..++ ++|..+.  .+++++||+|+..+++..-..    .|.....-.......+.++.++|+|||.+++..-
T Consensus        39 ~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d----~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~  107 (319)
T 1eg2_A           39 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLA----DWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG  107 (319)
T ss_dssp             EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGG----GGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCC----CccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence            5677 8888652  245678999999888753210    0100011224567888899999999999998643

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=85.73  E-value=2.5  Score=37.92  Aligned_cols=96  Identities=23%  Similarity=0.319  Sum_probs=62.7

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh-------cCC----------CCeEEEEcccCCCc
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-------KGY----------KEVKVLEADMLDLP  120 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~----------~~v~~~~~d~~~~~  120 (259)
                      .+|.-||+|.  +.++..+++.|. +|++.|.+++.++.+.+.+..       .+.          .++++ ..|...  
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--   81 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGH-QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP-VTDIHA--   81 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE-ECCGGG--
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE-eCCHHH--
Confidence            4688899997  456777788888 899999999999988764311       111          01222 223221  


Q ss_pred             CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                        -...|+|+..-+                ++......++.++...++|+.+++..+
T Consensus        82 --~~~aDlVIeAVp----------------e~~~vk~~v~~~l~~~~~~~~Ilasnt  120 (483)
T 3mog_A           82 --LAAADLVIEAAS----------------ERLEVKKALFAQLAEVCPPQTLLTTNT  120 (483)
T ss_dssp             --GGGCSEEEECCC----------------CCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             --hcCCCEEEEcCC----------------CcHHHHHHHHHHHHHhhccCcEEEecC
Confidence              135788885321                233455788999999999988776533

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=85.58  E-value=3.1  Score=33.63  Aligned_cols=114  Identities=11%  Similarity=0.181  Sum_probs=64.5

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCC---HHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLS---AVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----  121 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s---~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----  121 (259)
                      .++++|-.|++.|.   ++..|++.|. +|+.++.+   .+.++.+.+.+...+ .++.++..|+.+..     +     
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~   87 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQG-AKVALYQSDLSNEEEVAKLFDFAEK   87 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTT-CEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            46788888887653   4445556677 88887654   445555555555444 35778888887632     0     


Q ss_pred             CCCceeEEEecceeeeeeeCCCCCCCCCchhH--------HHHHHHHHHHHhcccCCcEEEEEe
Q 025039          122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETV--------TKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       122 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ..+..|+++.+..+...    .......++..        .....+++.+.+.|+++|.++.+.
T Consensus        88 ~~g~iD~lvnnAg~~~~----~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is  147 (262)
T 3ksu_A           88 EFGKVDIAINTVGKVLK----KPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA  147 (262)
T ss_dssp             HHCSEEEEEECCCCCCS----SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             HcCCCCEEEECCCCCCC----CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence            11468998876543211    00000011111        112235566677777888888764

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=85.43  E-value=3.5  Score=34.13  Aligned_cols=94  Identities=14%  Similarity=0.227  Sum_probs=59.0

Q ss_pred             CcEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHh-------hcCC---------------CCeEEEEcc
Q 025039           60 SSVLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLL-------LKGY---------------KEVKVLEAD  115 (259)
Q Consensus        60 ~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~~---------------~~v~~~~~d  115 (259)
                      .+|.-+|+|. |. ++..+++.|. +|+++|.+++.++.+++.+.       ..+.               .++.+ ..|
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~-~~~   93 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-STD   93 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-ESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE-ecC
Confidence            5799999998 44 6777788887 89999999998887654322       1121               01222 122


Q ss_pred             cCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          116 MLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       116 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                      ..+ .  -...|+|+..-+                +.......++.++...++|+.+++
T Consensus        94 ~~~-~--~~~aD~Vi~avp----------------~~~~~~~~v~~~l~~~~~~~~iv~  133 (302)
T 1f0y_A           94 AAS-V--VHSTDLVVEAIV----------------ENLKVKNELFKRLDKFAAEHTIFA  133 (302)
T ss_dssp             HHH-H--TTSCSEEEECCC----------------SCHHHHHHHHHHHTTTSCTTCEEE
T ss_pred             HHH-h--hcCCCEEEEcCc----------------CcHHHHHHHHHHHHhhCCCCeEEE
Confidence            221 1  135788885321                122345678888888898887654

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=85.41  E-value=1.6  Score=36.68  Aligned_cols=99  Identities=14%  Similarity=0.151  Sum_probs=55.7

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHH-Hhhc--CCCCeEEEEccc-CCCcCCCCceeEEEecc
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQER-LLLK--GYKEVKVLEADM-LDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~-~~~~--~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~  133 (259)
                      .+|+-+|+|.  +.++..|++.|. +|+.++-++  .+..++. +...  ......+..... .+.......+|+|+..-
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilav   79 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCI   79 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC-EEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEec
Confidence            4789999997  456666777777 899999876  2444432 1000  011222210111 11111113689988642


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ...                  ....+++.+...++++..++.+.-+
T Consensus        80 K~~------------------~~~~~l~~l~~~l~~~t~Iv~~~nG  107 (320)
T 3i83_A           80 KVV------------------EGADRVGLLRDAVAPDTGIVLISNG  107 (320)
T ss_dssp             CCC------------------TTCCHHHHHTTSCCTTCEEEEECSS
T ss_pred             CCC------------------ChHHHHHHHHhhcCCCCEEEEeCCC
Confidence            221                  2235788899999999887766443

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=85.29  E-value=8.8  Score=32.55  Aligned_cols=106  Identities=17%  Similarity=0.260  Sum_probs=68.8

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcC-CC-eEEEeeCCHHHHHHHHHHHhhc-----------------------CCCCeEEE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLK-----------------------GYKEVKVL  112 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~-----------------------~~~~v~~~  112 (259)
                      +...|+-+|||.=.....+...+ .. .++=+|+ |+.++.=++.+...                       .-++...+
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v  168 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI  168 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence            45789999999877777676543 22 6777776 66655444443321                       01346788


Q ss_pred             EcccCCCc----------CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          113 EADMLDLP----------FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       113 ~~d~~~~~----------~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      ..|+.+..          +.....-++++-+++-++             ..+....+|+.+.+... +|.+++.+.
T Consensus       169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL-------------~~~~~~~ll~~ia~~f~-~~~~i~yE~  230 (334)
T 3iei_A          169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYM-------------TPEQSANLLKWAANSFE-RAMFINYEQ  230 (334)
T ss_dssp             ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGS-------------CHHHHHHHHHHHHHHCS-SEEEEEEEE
T ss_pred             ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCC-------------CHHHHHHHHHHHHHhCC-CceEEEEec
Confidence            88887621          223345577888888877             56788899999988774 555555554

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=84.86  E-value=4.9  Score=32.85  Aligned_cols=88  Identities=20%  Similarity=0.260  Sum_probs=54.5

Q ss_pred             CcEEEEcCCC-C-cchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           60 SSVLELGCGN-S-RLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        60 ~~vLDiGcG~-G-~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .+|.-||+|. | .++..+++.|.. +|+++|.+++.++.+.+    .+... . ...+..+.   -...|+|+..-+  
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~-~-~~~~~~~~---~~~aDvVilavp--   75 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIVD-E-ATADFKVF---AALADVIILAVP--   75 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSCS-E-EESCTTTT---GGGCSEEEECSC--
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCcc-c-ccCCHHHh---hcCCCEEEEcCC--
Confidence            4789999997 3 455566666432 89999999987776654    23211 1 12233221   135798885322  


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhc-ccCCcEEE
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRV-LKPDGLFI  174 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-LkpgG~l~  174 (259)
                                      ......+++.+... ++++.+++
T Consensus        76 ----------------~~~~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           76 ----------------IKKTIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             ----------------HHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             ----------------HHHHHHHHHHHHhcCCCCCCEEE
Confidence                            23446788888888 88876655

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=84.60  E-value=3.6  Score=33.58  Aligned_cols=85  Identities=14%  Similarity=0.071  Sum_probs=52.9

Q ss_pred             cEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeee
Q 025039           61 SVLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL  138 (259)
Q Consensus        61 ~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~  138 (259)
                      +|.-+|+|. |. ++..+++ |. +|+++|.+++..+.+.+.    +.   ...  +..+.   -...|+|+..-.    
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~~~~~~~~~~----g~---~~~--~~~~~---~~~~D~vi~~v~----   64 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTFEKALRHQEE----FG---SEA--VPLER---VAEARVIFTCLP----   64 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TS-CEEEECSSTHHHHHHHHH----HC---CEE--CCGGG---GGGCSEEEECCS----
T ss_pred             eEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHC----CC---ccc--CHHHH---HhCCCEEEEeCC----
Confidence            588899987 54 4556666 76 899999998877766543    22   111  11111   135798885321    


Q ss_pred             eeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          139 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                                   .......+++.+...+++|..++.+
T Consensus        65 -------------~~~~~~~v~~~l~~~l~~~~~vv~~   89 (289)
T 2cvz_A           65 -------------TTREVYEVAEALYPYLREGTYWVDA   89 (289)
T ss_dssp             -------------SHHHHHHHHHHHTTTCCTTEEEEEC
T ss_pred             -------------ChHHHHHHHHHHHhhCCCCCEEEEC
Confidence                         1223556778888888888766644

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=84.35  E-value=3.8  Score=35.05  Aligned_cols=95  Identities=12%  Similarity=0.097  Sum_probs=60.1

Q ss_pred             CCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-CCCC------eEEEEcccCCCcCCCCceeEE
Q 025039           59 NSSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-GYKE------VKVLEADMLDLPFSNDCFDVV  129 (259)
Q Consensus        59 ~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~------v~~~~~d~~~~~~~~~~fD~V  129 (259)
                      ..+|.-+|+|. | .++..|++.|. +|+..|.+++.++..++.-... -.+.      +.+ ..|..+.   -...|+|
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~ea---~~~aDvV  103 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKAS---LEGVTDI  103 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHHH---HTTCCEE
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHHH---HhcCCEE
Confidence            45899999997 4 46667777777 8999999998888776642110 0111      221 1122110   1347888


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      +..-                  ......++++.+...++|+..++.+
T Consensus       104 ilaV------------------p~~~~~~vl~~i~~~l~~~~ivvs~  132 (356)
T 3k96_A          104 LIVV------------------PSFAFHEVITRMKPLIDAKTRIAWG  132 (356)
T ss_dssp             EECC------------------CHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             EECC------------------CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            7532                  2246678899999999988876654

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=84.23  E-value=4.2  Score=32.78  Aligned_cols=74  Identities=19%  Similarity=0.260  Sum_probs=54.1

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~  124 (259)
                      .++++|-.|++.|.   ++..|++.|. +|+.++.++..++.+.+.+...+ .++.++..|+.+..     +     ..+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTG-RRALSVGTDITDDAQVAHLVDETMKAYG   87 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46788988887763   5566677788 89999999988888877766555 36788888987632     0     124


Q ss_pred             ceeEEEecc
Q 025039          125 CFDVVIEKA  133 (259)
Q Consensus       125 ~fD~V~~~~  133 (259)
                      ..|+++.+.
T Consensus        88 ~id~lv~nA   96 (264)
T 3ucx_A           88 RVDVVINNA   96 (264)
T ss_dssp             CCSEEEECC
T ss_pred             CCcEEEECC
Confidence            689988765

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=84.06  E-value=3.4  Score=32.96  Aligned_cols=75  Identities=21%  Similarity=0.325  Sum_probs=53.5

Q ss_pred             CCCcEEEEcCCCC---cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039           58 PNSSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~  124 (259)
                      .++++|-.|++.|   .++..|++.|. +|+.++.++..++.+.+.+...+ ..+.++..|+.+..     +     ..+
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG-GTAISVAVDVSDPESAKAMADRTLAEFG   85 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4678888888765   35566677787 89999999988888777766544 35778888887632     0     113


Q ss_pred             ceeEEEecce
Q 025039          125 CFDVVIEKAT  134 (259)
Q Consensus       125 ~fD~V~~~~~  134 (259)
                      ..|+++.+..
T Consensus        86 ~id~li~~Ag   95 (253)
T 3qiv_A           86 GIDYLVNNAA   95 (253)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899887654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=83.47  E-value=3.9  Score=33.84  Aligned_cols=76  Identities=17%  Similarity=0.166  Sum_probs=54.8

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~  124 (259)
                      .+++||-.|++.|.   ++..|++.|. +|++++.++..++.+.+.+...+ .++.++..|+.+..     +     ..+
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQG-FDAHGVVCDVRHLDEMVRLADEAFRLLG  107 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            46789988888752   5556677787 89999999998888877776555 36788888987632     0     013


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+..+
T Consensus       108 ~id~lvnnAg~  118 (301)
T 3tjr_A          108 GVDVVFSNAGI  118 (301)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            68998877543

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=83.21  E-value=3.6  Score=32.70  Aligned_cols=74  Identities=9%  Similarity=0.124  Sum_probs=50.8

Q ss_pred             CCCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc------CCCCcee
Q 025039           57 KPNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDCFD  127 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD  127 (259)
                      .++++||-.|++.|.   ++..|++.|. +|+.++.++..++...+.+.    ..+.+...|+.+..      ...+..|
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~id   86 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALK----DNYTIEVCNLANKEECSNLISKTSNLD   86 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC----SSEEEEECCTTSHHHHHHHHHTCSCCS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhc----cCccEEEcCCCCHHHHHHHHHhcCCCC
Confidence            357788888887652   4556666787 89999999988777766553    35778888886622      1224689


Q ss_pred             EEEeccee
Q 025039          128 VVIEKATM  135 (259)
Q Consensus       128 ~V~~~~~l  135 (259)
                      +++.+...
T Consensus        87 ~li~~Ag~   94 (249)
T 3f9i_A           87 ILVCNAGI   94 (249)
T ss_dssp             EEEECCC-
T ss_pred             EEEECCCC
Confidence            98876543

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=83.20  E-value=3.4  Score=33.36  Aligned_cols=77  Identities=18%  Similarity=0.161  Sum_probs=53.5

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~  124 (259)
                      .++++|-.|++.|.   ++..|++.|. +|+.++.++..++.+.+.+...+-.++.++..|+.+..     +     ..+
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            45678877776642   4555666788 89999999988888777766554346888888987632     0     113


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+..+
T Consensus        88 ~id~lvnnAg~   98 (262)
T 3pk0_A           88 GIDVVCANAGV   98 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68998876543

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=82.80  E-value=10  Score=30.43  Aligned_cols=76  Identities=17%  Similarity=0.226  Sum_probs=48.5

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC-CCCeEEEEcccCCCc-----C-----CC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLP-----F-----SN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~-----~-----~~  123 (259)
                      .++++|-.|++.|.   ++..|++.|. +|++++.++...+.+.+.+.... -.++.++..|+.+..     +     ..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            35678888876642   4455666787 89999999877666555443221 124777888887632     0     01


Q ss_pred             CceeEEEecce
Q 025039          124 DCFDVVIEKAT  134 (259)
Q Consensus       124 ~~fD~V~~~~~  134 (259)
                      +..|+++.+..
T Consensus        85 g~id~lv~~Ag   95 (267)
T 2gdz_A           85 GRLDILVNNAG   95 (267)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            35799887654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=82.77  E-value=1.9  Score=35.33  Aligned_cols=76  Identities=17%  Similarity=0.280  Sum_probs=52.4

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC---------CCCc
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF---------SNDC  125 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~  125 (259)
                      .++++|-.|++.|.   ++..|++.|. +|+.++.++...+.+.+.+...+ ..+.++..|+.+...         ..+.
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~~~~~~~~~~~~g~  109 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASG-GTAQELAGDLSEAGAGTDLIERAEAIAP  109 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTT-CCEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            46778888877653   4556667787 89999998877777766665544 367888888876420         1146


Q ss_pred             eeEEEeccee
Q 025039          126 FDVVIEKATM  135 (259)
Q Consensus       126 fD~V~~~~~l  135 (259)
                      .|+++.+...
T Consensus       110 iD~lvnnAg~  119 (275)
T 4imr_A          110 VDILVINASA  119 (275)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8998876543

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=82.75  E-value=2.4  Score=34.10  Aligned_cols=76  Identities=12%  Similarity=0.187  Sum_probs=54.1

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C----CCCc
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F----SNDC  125 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~----~~~~  125 (259)
                      .++++|-.|++.|.   ++..|++.|. +|++++.++..++.+.+.+...+ .++.++..|+.+..     +    ..+.
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~g~   83 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG-GRIVARSLDARNEDEVTAFLNAADAHAP   83 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence            46778888887753   5556677788 89999999888887777766554 36788888987632     0    0147


Q ss_pred             eeEEEeccee
Q 025039          126 FDVVIEKATM  135 (259)
Q Consensus       126 fD~V~~~~~l  135 (259)
                      .|+++.+..+
T Consensus        84 id~lv~nAg~   93 (252)
T 3h7a_A           84 LEVTIFNVGA   93 (252)
T ss_dssp             EEEEEECCCC
T ss_pred             ceEEEECCCc
Confidence            8998876543

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=82.66  E-value=1.3  Score=36.90  Aligned_cols=54  Identities=20%  Similarity=0.172  Sum_probs=38.5

Q ss_pred             CCCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCH------------------HHHHHHHHHHhhcCCCCeEEE
Q 025039           58 PNSSVLELGCGN-S-RLSEGLYNDGITAITCIDLSA------------------VAVEKMQERLLLKGYKEVKVL  112 (259)
Q Consensus        58 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~------------------~~~~~a~~~~~~~~~~~v~~~  112 (259)
                      ...+||-+|||. | ..+..|+..|..+++.+|.+.                  .-.+.+++++...+ +.+.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iN-P~v~v~  108 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNIN-PDVLFE  108 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHC-TTSEEE
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhC-CCcEEE
Confidence            467999999996 4 466778888988999999765                  44566667666655 344443

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=82.11  E-value=2.4  Score=35.10  Aligned_cols=88  Identities=16%  Similarity=0.187  Sum_probs=57.0

Q ss_pred             CcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           60 SSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        60 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      .+|.-||+|. | .++..+++.|. +|++.|.+++.++.+.+.    +   +.+ ..+..+.   -. .|+|+..-+   
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~----g---~~~-~~~~~~~---~~-aDvvi~~vp---   79 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIEAMTPLAEA----G---ATL-ADSVADV---AA-ADLIHITVL---   79 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTTTSHHHHHT----T---CEE-CSSHHHH---TT-SSEEEECCS---
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHC----C---CEE-cCCHHHH---Hh-CCEEEEECC---
Confidence            5799999987 4 35666677777 899999998877766542    2   222 1222221   13 788875321   


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                                    .......+++.+...+++|..++-..
T Consensus        80 --------------~~~~~~~v~~~l~~~l~~g~ivv~~s  105 (296)
T 3qha_A           80 --------------DDAQVREVVGELAGHAKPGTVIAIHS  105 (296)
T ss_dssp             --------------SHHHHHHHHHHHHTTCCTTCEEEECS
T ss_pred             --------------ChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence                          22455677888889999887776543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=82.00  E-value=4.8  Score=28.61  Aligned_cols=66  Identities=17%  Similarity=0.238  Sum_probs=39.0

Q ss_pred             CCcEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEec
Q 025039           59 NSSVLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEK  132 (259)
Q Consensus        59 ~~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~  132 (259)
                      ..+|+-+|+|. |. ++..+.+.|. +|+++|.++..++.+++    .   ...+..+|..+..    .....+|+|+..
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~----~---~~~~~~~d~~~~~~l~~~~~~~~d~vi~~   77 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYAS----Y---ATHAVIANATEENELLSLGIRNFEYVIVA   77 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTT----T---CSEEEECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----h---CCEEEEeCCCCHHHHHhcCCCCCCEEEEC
Confidence            45799999865 33 2334445566 89999999865543321    1   2355666664421    112468988864

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=81.73  E-value=1.7  Score=38.77  Aligned_cols=67  Identities=13%  Similarity=0.215  Sum_probs=0.0

Q ss_pred             CCcEEEEcCCC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEe
Q 025039           59 NSSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE  131 (259)
Q Consensus        59 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~  131 (259)
                      ..+|+-+|||. |......+..-...|+.+|.+++.++.+.+.+      ++.++++|..+..    ..-+..|++++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~------~~~~i~Gd~~~~~~L~~Agi~~ad~~ia   74 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY------DLRVVNGHASHPDVLHEAGAQDADMLVA   74 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS------SCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc------CcEEEEEcCCCHHHHHhcCCCcCCEEEE

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=81.64  E-value=10  Score=32.73  Aligned_cols=96  Identities=19%  Similarity=0.170  Sum_probs=60.8

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      .+.+||.++-+-|.++..+... . +++.+.-|......    +..++++. .. ...   .......||+|+..-+   
T Consensus        45 ~~~~~l~~n~~~g~~~~~~~~~-~-~~~~~~~~~~~~~~----l~~~~~~~-~~-~~~---~~~~~~~~d~v~~~~P---  110 (381)
T 3dmg_A           45 FGERALDLNPGVGWGSLPLEGR-M-AVERLETSRAAFRC----LTASGLQA-RL-ALP---WEAAAGAYDLVVLALP---  110 (381)
T ss_dssp             CSSEEEESSCTTSTTTGGGBTT-B-EEEEEECBHHHHHH----HHHTTCCC-EE-CCG---GGSCTTCEEEEEEECC---
T ss_pred             hCCcEEEecCCCCccccccCCC-C-ceEEEeCcHHHHHH----HHHcCCCc-cc-cCC---ccCCcCCCCEEEEECC---
Confidence            4578999999999888766422 3 67777656544443    44446533 22 111   1123467999885321   


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                                 ...........|..+.+.|+|||.++++.-
T Consensus       111 -----------k~k~~~~~~~~l~~~~~~l~~g~~i~~~g~  140 (381)
T 3dmg_A          111 -----------AGRGTAYVQASLVAAARALRMGGRLYLAGD  140 (381)
T ss_dssp             -----------GGGCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----------cchhHHHHHHHHHHHHHhCCCCCEEEEEEc
Confidence                       001224567889999999999999998763

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=81.60  E-value=9.4  Score=36.03  Aligned_cols=95  Identities=18%  Similarity=0.174  Sum_probs=60.0

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh-------cC----------CCCeEEEEcccCCCc
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-------KG----------YKEVKVLEADMLDLP  120 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~----------~~~v~~~~~d~~~~~  120 (259)
                      .+|--||+|.  +.++..++..|. +|++.|.+++.++.+++.+..       .+          ..+++.. .|...  
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~d~~~--  388 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGS-LDYES--  388 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTC-CEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEE-SSSGG--
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEe-CCHHH--
Confidence            4699999997  456677778888 899999999988876543211       11          0123322 23211  


Q ss_pred             CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                        -...|+|+..-+                ++......++.++...++|+.++...
T Consensus       389 --~~~aDlVIeaVp----------------e~~~vk~~v~~~l~~~~~~~~Ilasn  426 (725)
T 2wtb_A          389 --FRDVDMVIEAVI----------------ENISLKQQIFADLEKYCPQHCILASN  426 (725)
T ss_dssp             --GTTCSEEEECCC----------------SCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             --HCCCCEEEEcCc----------------CCHHHHHHHHHHHHhhCCCCcEEEeC
Confidence              135788885321                23344567888899999988866543

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=81.52  E-value=4.2  Score=32.69  Aligned_cols=76  Identities=14%  Similarity=0.209  Sum_probs=53.6

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~  124 (259)
                      .++++|-.|++.|.   ++..|++.|. +|+.+|.++..++.+.+.+...+ .++.++..|+.+..     +     ..+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   88 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAG-GKAIGLECNVTDEQHREAVIKAALDQFG   88 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46778888877653   4556667788 89999999988888777666554 36788888887632     0     113


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+...
T Consensus        89 ~id~lv~nAg~   99 (256)
T 3gaf_A           89 KITVLVNNAGG   99 (256)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68998876543

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=81.45  E-value=3.8  Score=34.54  Aligned_cols=95  Identities=18%  Similarity=0.226  Sum_probs=55.6

Q ss_pred             CcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh--cC--CCC---eEEEEcccCCCcCCCCceeEEE
Q 025039           60 SSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLL--KG--YKE---VKVLEADMLDLPFSNDCFDVVI  130 (259)
Q Consensus        60 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~--~~~---v~~~~~d~~~~~~~~~~fD~V~  130 (259)
                      .+|.-+|+|. | .++..|++.|. +|+++|.+++.++..++....  .+  ...   +.....+..+.   ...+|+|+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~D~vi   80 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDADVIL   80 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCSEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHH---HhcCCEEE
Confidence            5799999987 4 35556666777 899999999887776654210  00  000   00011111110   13579887


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ..-.-                  ....++++.+...++++..++..
T Consensus        81 ~~v~~------------------~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           81 IVVPA------------------IHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             ECSCG------------------GGHHHHHHHHGGGCCTTCEEEES
T ss_pred             EeCCc------------------hHHHHHHHHHHHhCCCCCEEEEc
Confidence            53221                  12357788888899988766654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=81.42  E-value=4.9  Score=32.77  Aligned_cols=76  Identities=16%  Similarity=0.163  Sum_probs=53.2

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~  124 (259)
                      .++++|-.|++.|.   ++..|++.|. +|++++.++..++.+.+.+...+ ..+.++..|+.+..     +     ..+
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAG-HDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT-CCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46789988887653   5556677788 89999999988888777766554 36888888887632     0     113


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+...
T Consensus       101 ~id~lv~nAg~  111 (279)
T 3sju_A          101 PIGILVNSAGR  111 (279)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            68998876543

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=81.40  E-value=3.9  Score=32.85  Aligned_cols=75  Identities=11%  Similarity=0.171  Sum_probs=52.6

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~  124 (259)
                      .++++|-.|++.|.   ++..|++.|. +|+.++.++..++.+.+.+...+ ..+.++..|+.+..     +     ..+
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFP-GQILTVQMDVRNTDDIQKMIEQIDEKFG   82 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCST-TCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            35678887776652   4556667787 89999999998888877776544 35788888987632     0     113


Q ss_pred             ceeEEEecce
Q 025039          125 CFDVVIEKAT  134 (259)
Q Consensus       125 ~fD~V~~~~~  134 (259)
                      ..|+++.+..
T Consensus        83 ~id~lv~nAg   92 (257)
T 3imf_A           83 RIDILINNAA   92 (257)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899887654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=81.31  E-value=2.5  Score=35.26  Aligned_cols=92  Identities=15%  Similarity=0.177  Sum_probs=53.8

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE--ccc-------CCCcCCCCceeE
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE--ADM-------LDLPFSNDCFDV  128 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~--~d~-------~~~~~~~~~fD~  128 (259)
                      .+|+-+|+|.  +.++..|++.|. +|+.++-++  .+..++    .+   +.+..  ++.       ..-+.....+|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~--~~~i~~----~g---~~~~~~~g~~~~~~~~~~~~~~~~~~~D~   72 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE-DVHFLLRRD--YEAIAG----NG---LKVFSINGDFTLPHVKGYRAPEEIGPMDL   72 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC-CEEEECSTT--HHHHHH----TC---EEEEETTCCEEESCCCEESCHHHHCCCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcCc--HHHHHh----CC---CEEEcCCCeEEEeeceeecCHHHcCCCCE
Confidence            4789999998  345666777777 899999876  243332    22   11111  000       000001136898


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |+..-..                  ....++++.+...++|+..++.+.-+
T Consensus        73 vilavk~------------------~~~~~~l~~l~~~l~~~~~iv~l~nG  105 (312)
T 3hn2_A           73 VLVGLKT------------------FANSRYEELIRPLVEEGTQILTLQNG  105 (312)
T ss_dssp             EEECCCG------------------GGGGGHHHHHGGGCCTTCEEEECCSS
T ss_pred             EEEecCC------------------CCcHHHHHHHHhhcCCCCEEEEecCC
Confidence            8853221                  23357888999999999877765433

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=81.29  E-value=5.8  Score=31.98  Aligned_cols=77  Identities=14%  Similarity=0.122  Sum_probs=53.5

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh-cCCCCeEEEEcccCCCc-----C-----CC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLL-KGYKEVKVLEADMLDLP-----F-----SN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~-----~-----~~  123 (259)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.++..++.+.+.+.. .+..++.++..|+.+..     +     ..
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            46788888887753   5556677788 899999999888877776654 33234788888887632     0     11


Q ss_pred             CceeEEEeccee
Q 025039          124 DCFDVVIEKATM  135 (259)
Q Consensus       124 ~~fD~V~~~~~l  135 (259)
                      +..|+++.+..+
T Consensus        86 g~id~lvnnAg~   97 (265)
T 3lf2_A           86 GCASILVNNAGQ   97 (265)
T ss_dssp             CSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            468998876543

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=81.21  E-value=4  Score=32.86  Aligned_cols=76  Identities=12%  Similarity=0.191  Sum_probs=52.7

Q ss_pred             CCCcEEEEcCCCC---cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039           58 PNSSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~  124 (259)
                      .+++||-.|++.|   .++..|++.|. +|+.++.++..++...+.+...+ ..+.++..|+.+..     +     ..+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAG-GEAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhC-CceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            4667888887654   24455566787 89999999988888777766554 35788888887632     0     114


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+...
T Consensus       106 ~id~lv~~Ag~  116 (262)
T 3rkr_A          106 RCDVLVNNAGV  116 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            68998876543

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=81.02  E-value=4  Score=33.31  Aligned_cols=74  Identities=16%  Similarity=0.206  Sum_probs=49.6

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----CC-----CC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FS-----ND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~  124 (259)
                      .+.+||-.|++.|.   ++..+++.|. +|++++.++..++...+.+...+...+.++..|+.+..     +.     .+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  105 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG  105 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            35678888876542   3445566687 89999999888877666555444335778888887632     00     13


Q ss_pred             ceeEEEec
Q 025039          125 CFDVVIEK  132 (259)
Q Consensus       125 ~fD~V~~~  132 (259)
                      .+|+++.+
T Consensus       106 ~iD~li~n  113 (286)
T 1xu9_A          106 GLDMLILN  113 (286)
T ss_dssp             SCSEEEEC
T ss_pred             CCCEEEEC
Confidence            68998876

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=80.88  E-value=5.7  Score=32.47  Aligned_cols=76  Identities=24%  Similarity=0.383  Sum_probs=53.6

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~  124 (259)
                      +++++|-.|++.|.   ++..|++.|. +|+.++.++..++.+.+.+...+ ..+.++..|+.+..     +     ..+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAG-GQAIALEADVSDELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46678888887653   4556667788 89999999988888777766544 35778888887632     0     114


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+..+
T Consensus       105 ~iD~lVnnAg~  115 (283)
T 3v8b_A          105 HLDIVVANAGI  115 (283)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68998876543

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=80.69  E-value=3.2  Score=37.14  Aligned_cols=105  Identities=13%  Similarity=0.197  Sum_probs=60.5

Q ss_pred             CCCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc---CC----------CCeEEEEcccCCCcCC
Q 025039           58 PNSSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK---GY----------KEVKVLEADMLDLPFS  122 (259)
Q Consensus        58 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~----------~~v~~~~~d~~~~~~~  122 (259)
                      ...+|.-+|+|. | .++..+++.|. +|+++|.+++.++..++.....   ++          .++.+ ..|..+   .
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~---a   81 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEA---A   81 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHH---H
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHH---H
Confidence            457899999997 4 46667788888 8999999999888776531100   00          01222 111111   0


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                      -...|+|+..-+-.  ....+      ..+.....++++.+.+.|+||..++.
T Consensus        82 ~~~aDvviiaVptp--~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~  126 (478)
T 2y0c_A           82 VAHGDVQFIAVGTP--PDEDG------SADLQYVLAAARNIGRYMTGFKVIVD  126 (478)
T ss_dssp             HHHCSEEEECCCCC--BCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             hhcCCEEEEEeCCC--cccCC------CccHHHHHHHHHHHHHhcCCCCEEEE
Confidence            12468877531100  00000      01235677888889999998776654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=80.61  E-value=2.8  Score=37.19  Aligned_cols=104  Identities=13%  Similarity=0.196  Sum_probs=59.0

Q ss_pred             CcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc---C----------CCCeEEEEcccCCCcCCCC
Q 025039           60 SSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK---G----------YKEVKVLEADMLDLPFSND  124 (259)
Q Consensus        60 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~----------~~~v~~~~~d~~~~~~~~~  124 (259)
                      .+|.-+|+|. | .++..+++.|. +|+++|.+++.++..++.....   +          -.++.+. .|..+.   -.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~d~~ea---~~   77 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-TEIEQA---VP   77 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-SCHHHH---GG
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-CCHHHH---Hh
Confidence            4688899987 3 45566777787 9999999999888776531100   0          0122221 222110   12


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ..|+|+..-+-..  ...+      ..+......+++.+.+.|++|..++..
T Consensus        78 ~aDvViiaVptp~--~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~  121 (450)
T 3gg2_A           78 EADIIFIAVGTPA--GEDG------SADMSYVLDAARSIGRAMSRYILIVTK  121 (450)
T ss_dssp             GCSEEEECCCCCB--CTTS------SBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             cCCEEEEEcCCCc--ccCC------CcChHHHHHHHHHHHhhCCCCCEEEEe
Confidence            4688775321100  0000      012246678888999999887766654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=80.57  E-value=1.9  Score=36.98  Aligned_cols=93  Identities=17%  Similarity=0.177  Sum_probs=57.3

Q ss_pred             CCCcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           58 PNSSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        58 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      ...+|.-||+|. | .++..|++.|. +|++.|.+++.++.+.+.    ++   .. ..+..+........|+|+..-+-
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~----g~---~~-~~s~~e~~~~a~~~DvVi~~vp~   91 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALERE----GI---AG-ARSIEEFCAKLVKPRVVWLMVPA   91 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT----TC---BC-CSSHHHHHHHSCSSCEEEECSCG
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHC----CC---EE-eCCHHHHHhcCCCCCEEEEeCCH
Confidence            356899999987 4 45667777787 899999999877765532    21   11 11221111011235888753221


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                                      .  ....+++.+...|++|.+++-..
T Consensus        92 ----------------~--~v~~vl~~l~~~l~~g~iiId~s  115 (358)
T 4e21_A           92 ----------------A--VVDSMLQRMTPLLAANDIVIDGG  115 (358)
T ss_dssp             ----------------G--GHHHHHHHHGGGCCTTCEEEECS
T ss_pred             ----------------H--HHHHHHHHHHhhCCCCCEEEeCC
Confidence                            1  45677888999999887766543

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=80.34  E-value=4.4  Score=32.90  Aligned_cols=75  Identities=16%  Similarity=0.146  Sum_probs=52.2

Q ss_pred             CCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----C-----CCCc
Q 025039           59 NSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC  125 (259)
Q Consensus        59 ~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~~  125 (259)
                      ++++|-.|++.|.   ++..|++.|. +|+.++.++..++.+.+.+...+ ..+.++..|+.+..     +     ..+.
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   81 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAG-GTALAQVLDVTDRHSVAAFAQAAVDTWGR   81 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5678888877653   4556666787 89999999988888877766554 35777788887632     0     1146


Q ss_pred             eeEEEeccee
Q 025039          126 FDVVIEKATM  135 (259)
Q Consensus       126 fD~V~~~~~l  135 (259)
                      .|+++.+..+
T Consensus        82 iD~lVnnAG~   91 (264)
T 3tfo_A           82 IDVLVNNAGV   91 (264)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8998876543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=80.27  E-value=5.2  Score=31.71  Aligned_cols=74  Identities=19%  Similarity=0.301  Sum_probs=52.4

Q ss_pred             CCcEEEEcCCCC---cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCCc
Q 025039           59 NSSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC  125 (259)
Q Consensus        59 ~~~vLDiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~~  125 (259)
                      ++++|-.|++.|   .++..|++.|. +|++++.++...+...+.+...+ ..+.++..|+.+..          ...+.
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKG-FKARGLVLNISDIESIQNFFAEIKAENLA   82 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            567888887665   24556667787 89999999988888777766655 36888888887632          11246


Q ss_pred             eeEEEecce
Q 025039          126 FDVVIEKAT  134 (259)
Q Consensus       126 fD~V~~~~~  134 (259)
                      .|+++.+..
T Consensus        83 id~li~~Ag   91 (247)
T 3lyl_A           83 IDILVNNAG   91 (247)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899887654

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=80.17  E-value=2.5  Score=35.92  Aligned_cols=86  Identities=22%  Similarity=0.212  Sum_probs=53.3

Q ss_pred             CCcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHH-HHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           59 NSSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVA-VEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        59 ~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~-~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.+|.-||+|.  +.++..+.+.|. +|++.|.++.. .+.+++    .|   +.+.  +..+. .  ...|+|+..-+ 
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~~~~~~~a~~----~G---~~~~--~~~e~-~--~~aDvVilavp-   81 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEA----HG---LKVA--DVKTA-V--AAADVVMILTP-   81 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTCHHHHHHHH----TT---CEEE--CHHHH-H--HTCSEEEECSC-
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcC-EEEEEECChHHHHHHHHH----CC---CEEc--cHHHH-H--hcCCEEEEeCC-
Confidence            45799999997  445566677777 78999987643 444432    23   2322  32221 1  24798885322 


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHH-HHHhcccCCcEEEE
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLE-GVHRVLKPDGLFIS  175 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~  175 (259)
                                       ......++. ++...++||..++.
T Consensus        82 -----------------~~~~~~v~~~~i~~~l~~~~ivi~  105 (338)
T 1np3_A           82 -----------------DEFQGRLYKEEIEPNLKKGATLAF  105 (338)
T ss_dssp             -----------------HHHHHHHHHHHTGGGCCTTCEEEE
T ss_pred             -----------------cHHHHHHHHHHHHhhCCCCCEEEE
Confidence                             234467777 88888988876663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	1e-09
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	1e-09
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	3e-08
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	4e-08
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	8e-08
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	8e-08
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	7e-07
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	1e-06
d2bzga1	229	c.66.1.36 (A:17-245) Thiopurine S-methyltransferas	2e-06
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	2e-06
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	4e-06
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	9e-06
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	1e-05
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	2e-05
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	2e-05
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	3e-05
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	4e-05
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	5e-05
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	6e-05
d1ve3a1	226	c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A	8e-05
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	8e-05
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	3e-04
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	4e-04
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	0.001
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	0.001
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	0.004
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	0.004

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 55.0 bits (131), Expect = 1e-09
 Identities = 31/221 (14%), Positives = 68/221 (30%), Gaps = 19/221 (8%)

Query: 42  LKDYSHF--RHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQE 99
           +++ ++F    L++ + K   SVL+LGCG           GI     +D++ V++   + 
Sbjct: 6   IRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARV 65

Query: 100 RLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMA 158
           R      + +V     D                        ++S   ++    T   +  
Sbjct: 66  RARNMKRRFKVFFRAQDSYGRHMDLGKEFD----------VISSQFSFHYAFSTSESLDI 115

Query: 159 MLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKR 218
               + R L+P G FI     +      +            I            +R+ + 
Sbjct: 116 AQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMS-NDFYKIELEKMEDVPMESVREYRF 174

Query: 219 SSADEELSQSHDKPLVPTISMFHEELE--GEDYIFRTNIDE 257
           +  D   S ++        +   +  +  G   + R    +
Sbjct: 175 TLLD---SVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFID 212

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.3 bits (132), Expect = 1e-09
 Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 38/224 (16%)

Query: 23  YLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGIT 82
               +  D R    E+  WL        L++ H      VL++ CG    S  L  +G +
Sbjct: 29  VWQLYIGDTRSRTAEYKAWLLG------LLRQH--GCHRVLDVACGTGVDSIMLVEEGFS 80

Query: 83  AITCI---DLSAVAVEKMQERLLLKGYKEVKVLEADML----DLPFSNDCFDVVIEKATM 135
             +      +   A+++   R     + +  + EA+ L    D+P  +    V+    + 
Sbjct: 81  VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSF 140

Query: 136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF----------ISVSFGQPHFRR 185
             L  + GD    +          L+ +  +++P GL           +S     P    
Sbjct: 141 AHLPDSKGDQSEHR--------LALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNI 192

Query: 186 PFFNAPQFTWSVEWITFGDG-----FHYFFYILRKGKRSSADEE 224
            + +      +   +T  +        Y   +   G+  +    
Sbjct: 193 YYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFS 236

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.3 bits (122), Expect = 3e-08
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 17/142 (11%)

Query: 38  HYEWLKD---YSHFRHLVQ--PHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAV 92
           H E LKD      +R+ +    H+  +  VL++G G   L       G   +  I+ S++
Sbjct: 8   HEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI 67

Query: 93  AVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPET 152
           +   ++     K    V +++  + ++    +  D++I +     LF  S          
Sbjct: 68  SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES---------- 117

Query: 153 VTKVMAMLEGVHRVLKPDGLFI 174
              +  +L    + L PDGL  
Sbjct: 118 --MLNTVLHARDKWLAPDGLIF 137

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 50.4 bits (119), Expect = 4e-08
 Identities = 22/182 (12%), Positives = 44/182 (24%), Gaps = 17/182 (9%)

Query: 27  HYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITC 86
           H +D+    +  Y+   D+         +       L+L CG   L+E L          
Sbjct: 8   HIYDKLIRADVDYKKWSDF--IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAV 65

Query: 87  IDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPW 146
                          L +        +     L     C D+       +   +      
Sbjct: 66  D--------------LSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDS 111

Query: 147 NPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGF 206
                    +    + V   LK  G+FI       +          F +  + + +    
Sbjct: 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFI-FDINSYYKLSQVLGNNDFNYDDDEVFYYWEN 170

Query: 207 HY 208
            +
Sbjct: 171 QF 172

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 8e-08
 Identities = 28/206 (13%), Positives = 59/206 (28%), Gaps = 42/206 (20%)

Query: 31  ERFSDEEHYEWLKDYSHFRHLVQ-PHIKPNSSVLELGCGNSRLSEGLYNDGITA-ITCID 88
           E FS E + E    +     ++    +  +   ++LG G  ++   +           ++
Sbjct: 125 EPFSPEVYGE--TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVE 182

Query: 89  LSAVAVEKMQE---------RLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF 139
            + +  +  +          +   K + E  +   D L   +     +         V+F
Sbjct: 183 KADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTS-------VIF 235

Query: 140 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRP----------FFN 189
           VN+             V   L+     +K  G  +S     P   R              
Sbjct: 236 VNNFAFGPE-------VDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMR 288

Query: 190 APQFTW---SVEWITFGDGFHYFFYI 212
             + +    SV W   G    Y+ + 
Sbjct: 289 VVELSPLKGSVSW--TGKPVSYYLHT 312

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 8e-08
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 17/142 (11%)

Query: 38  HYEWLKD---YSHFRHLVQ--PHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAV 92
           H E LKD      +R  +   PHI  +  VL++GCG   LS      G   +  +D S +
Sbjct: 10  HEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEI 69

Query: 93  AVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPET 152
             + M    L K    + +++  + ++    +  DV+I +     L   S          
Sbjct: 70  LYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDS------ 123

Query: 153 VTKVMAMLEGVHRVLKPDGLFI 174
                 +L   ++ L   G   
Sbjct: 124 ------VLYAKNKYLAKGGSVY 139

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 46.2 bits (108), Expect = 7e-07
 Identities = 20/161 (12%), Positives = 45/161 (27%), Gaps = 6/161 (3%)

Query: 49  RHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE 108
           ++    ++ P + VL   CG S+    L   G   +   +LS  AVE+       + +  
Sbjct: 11  QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYH-VVGAELSEAAVERYFTERGEQPHIT 69

Query: 109 VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLK 168
            +              C D     A          D               ++ +  ++ 
Sbjct: 70  SQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMP 129

Query: 169 PDGLFISVSFGQPHFRRPFFNAPQFTWSVEWIT--FGDGFH 207
                + ++     + +     P F+    W+       + 
Sbjct: 130 QACSGLLITL---EYDQALLEGPPFSVPQTWLHRVMSGNWE 167

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 36/204 (17%)

Query: 27  HYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYND-GITAIT 85
           HY  + FS+  + E L ++       Q  +K   + ++LG G          + G     
Sbjct: 188 HY--KAFSNYVYGELLPNFLS-DVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSF 244

Query: 86  CIDLSAVAVE-------KMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 138
             ++   A +       ++++R  L G +   V  +        N+    +I +    V+
Sbjct: 245 GCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF-VDNNRVAELIPQCD--VI 301

Query: 139 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV-SFGQPHFRRPFFNAPQF---- 193
            VN+             +   +E + +  K     IS+ S     ++  F+N        
Sbjct: 302 LVNNFLFD-------EDLNKKVEKILQTAKVGCKIISLKSLRSLTYQINFYNVENIFNRL 354

Query: 194 --------TWSVEWITFGDGFHYF 209
                     SV W     G  Y+
Sbjct: 355 KVQRYDLKEDSVSW--THSGGEYY 376

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 21/198 (10%), Positives = 51/198 (25%), Gaps = 22/198 (11%)

Query: 24  LDPHYWDERFSD-------EEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGL 76
           L    W +++ +       E+ ++ LK +           K    V    CG +   +  
Sbjct: 8   LTLEEWQDKWVNGKTAFHQEQGHQLLKKHLD----TFLKGKSGLRVFFPLCGKAVEMKWF 63

Query: 77  YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 136
            + G + +  +++S + +++      L   +E             S+    +        
Sbjct: 64  ADRGHS-VVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL 122

Query: 137 VLFVNSGDP-----WNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAP 191
                                        + +  +L     ++         + P    P
Sbjct: 123 PRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP---GP 179

Query: 192 QFTWSVEWIT--FGDGFH 207
            F      I   FG   +
Sbjct: 180 PFYVPHAEIERLFGKICN 197

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 32/183 (17%), Positives = 55/183 (30%), Gaps = 18/183 (9%)

Query: 29  WDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCID 88
            DE +  E+ Y   + +S         + P    L+LGCGN R S  LY           
Sbjct: 4   RDENYFTEK-YGLTRTHSDVLAAA-KVVAP-GRTLDLGCGNGRNS--LYLAANGYDVTAW 58

Query: 89  LSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNP 148
               A     ER+      +    +   L+    +  +D ++    M  L          
Sbjct: 59  DKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFL---------- 108

Query: 149 QPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHY 208
                  +  ++  + R  KP G  + V+             P      E   + +G+  
Sbjct: 109 ---EAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELRRYYEGWDM 165

Query: 209 FFY 211
             Y
Sbjct: 166 LKY 168

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 4e-06
 Identities = 23/216 (10%), Positives = 53/216 (24%), Gaps = 51/216 (23%)

Query: 21  SAYLDPHYWDERFSDEEHYEWLKDY-SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYND 79
            AYL  +Y   R                             +++++G G +         
Sbjct: 16  RAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACS 75

Query: 80  GITAITCIDLSAVAVEKMQERL-----------------LLKGYKE----------VKVL 112
               IT  D   V  +++   L                 L++G  E           +V 
Sbjct: 76  HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVK 135

Query: 113 EADMLDL---------PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGV 163
               +D+           +    D ++    +E +  +                  L+ +
Sbjct: 136 RVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASF-----------QRALDHI 184

Query: 164 HRVLKPDGLFISVSFGQPHFRRPF---FNAPQFTWS 196
             +L+P G  + +   +  +             +  
Sbjct: 185 TTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEE 220

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 9e-06
 Identities = 24/204 (11%), Positives = 49/204 (24%), Gaps = 49/204 (24%)

Query: 20  TSAYLDPHY--WDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLY 77
              YL  +Y        + E  ++  +         P      +++++G G +       
Sbjct: 13  PRDYLATYYSFDGSPSPEAEMLKFNLE--CLHKTFGPGGLQGDTLIDIGSGPTIYQVLAA 70

Query: 78  NDGITAITCIDLSAVAVEKMQERLLLKG-------------------------------- 105
            D    IT  D +    E++++ L  +                                 
Sbjct: 71  CDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 130

Query: 106 --YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGV 163
                   +       P      D V+    ME    +                A L  +
Sbjct: 131 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYR-----------AALCNL 179

Query: 164 HRVLKPDGLFISVSFGQPHFRRPF 187
             +LKP G  ++    +       
Sbjct: 180 ASLLKPGGHLVTTVTLRLPSYMVG 203

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 30/156 (19%), Positives = 47/156 (30%), Gaps = 22/156 (14%)

Query: 56  IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD 115
            +    VL++G G    +             +D +   VE        KG + V+  +  
Sbjct: 14  CRAEHRVLDIGAGAGHTALAFSPYVQE-CIGVDATKEMVEVASSFAQEKGVENVRFQQGT 72

Query: 116 MLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175
              LPF +D FD++                        + V   +  V RVLK DG F+ 
Sbjct: 73  AESLPFPDDSFDIIT---------------CRYAAHHFSDVRKAVREVARVLKQDGRFLL 117

Query: 176 VSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFY 211
           V    P    P  +     +        D  H    
Sbjct: 118 VDHYAPE--DPVLD----EFVNHLNRLRDPSHVRES 147

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 17/153 (11%), Positives = 42/153 (27%), Gaps = 22/153 (14%)

Query: 27  HYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITC 86
           +    +    +   +       R  +    KP+  V+++  G   LS  +   G   +  
Sbjct: 77  NGIKYKLDVAKIM-FSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIA 135

Query: 87  IDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDP 145
           I+      + + E + L   ++ +     D  D P   +  D ++            G  
Sbjct: 136 IEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRIL-----------MGYV 183

Query: 146 WNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 178
                         +     + K   +    + 
Sbjct: 184 VRTHE--------FIPKALSIAKDGAIIHYHNT 208

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 20/153 (13%)

Query: 55  HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA 114
            +KP + +L+LG G+  +      D     T ID+S++   + + R    G  E      
Sbjct: 30  RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH 89

Query: 115 DMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174
           +      +N+  DV        +     G     +             + + LKP G+ +
Sbjct: 90  NDAAGYVANEKCDVAACVGATWIA----GGFAGAEEL-----------LAQSLKPGGIML 134

Query: 175 SVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFH 207
               G+P++R+    A +       ++    F 
Sbjct: 135 ---IGEPYWRQL--PATEEIAQACGVSSTSDFL 162

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 22/157 (14%)

Query: 32  RFSDEEHYEWLKDYSH-----FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITA-IT 85
           +  DEE+  W  + S       + L    IK +S +L LG         + +      + 
Sbjct: 43  KIGDEEYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVY 102

Query: 86  CIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDP 145
            I+ +   + ++ +    +    + +L        ++N    V           +     
Sbjct: 103 AIEYAPRIMRELLDA-CAERENIIPILGDANKPQEYANIVEKVD---------VIYEDVA 152

Query: 146 WNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 182
              Q E       +++     LK  G  +     +  
Sbjct: 153 QPNQAEI------LIKNAKWFLKKGGYGMIAIKARSI 183

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 56  IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEA 114
              N   +++GCG   ++  L       +  ID +  A+   +  L   G    V ++E 
Sbjct: 31  PGKNDVAVDVGCGTGGVTLELAGRVRR-VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG 89

Query: 115 DMLDLPFSNDCFDVVI 130
           D  +        D+ +
Sbjct: 90  DAPEALCKIPDIDIAV 105

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 41.2 bits (95), Expect = 5e-05
 Identities = 20/157 (12%), Positives = 41/157 (26%), Gaps = 24/157 (15%)

Query: 56  IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD 115
           +K N  VL++  G   ++          +   DL+   ++  +                 
Sbjct: 13  LKGNEEVLDVATGGGHVANAFAPFVKK-VVAFDLTEDILKVARAF---------IEGNGH 62

Query: 116 MLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 175
                   D   +        ++         P P       + +   +RVLK  G  + 
Sbjct: 63  QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPA------SFVSEAYRVLKKGGQLLL 116

Query: 176 VSFGQPHFRRPFFNAPQFTWSVEWI-TFGDGFHYFFY 211
           V    P           F     ++    D  H+  +
Sbjct: 117 VDNSAP-------ENDAFDVFYNYVEKERDYSHHRAW 146

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (96), Expect = 6e-05
 Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 17/156 (10%)

Query: 27  HYWDERFSDEEHYEWLKD---YSHFRHLV--QPHIKPNSSVLELGCGNSRLSEGLYNDGI 81
           +Y+D       H E L+D      +R+ +     +  +  VL++GCG   LS      G 
Sbjct: 2   YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGA 61

Query: 82  TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVN 141
             +  +D+S++     +   L     ++ +L   + D+       D++I +     L   
Sbjct: 62  KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYE 121

Query: 142 SGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 177
           S                +L      L   GL     
Sbjct: 122 SMMDT------------VLYARDHYLVEGGLIFPDK 145

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.5 bits (93), Expect = 8e-05
 Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 24/193 (12%)

Query: 31  ERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLS 90
             ++D    E+         L+  ++K    VL+L CG    S  L + G   +      
Sbjct: 10  PTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISE 69

Query: 91  AVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQP 150
            +  +  +          V+ +  D   L F +  FD VI      ++     +      
Sbjct: 70  DMIRKAREYA--KSRESNVEFIVGDARKLSFEDKTFDYVI--FIDSIVHFEPLEL----- 120

Query: 151 ETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFF 210
                   + + V RVLKP G FI + F       P           E +  G  +    
Sbjct: 121 ------NQVFKEVRRVLKPSGKFI-MYFTDLRELLPRL--------KESLVVGQKYWISK 165

Query: 211 YILRKGKRSSADE 223
            I  + +R+   E
Sbjct: 166 VIPDQEERTVVIE 178

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 40.5 bits (94), Expect = 8e-05
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 17/121 (14%)

Query: 55  HIKPNSSVLELGCGNSRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE 113
            ++ +  VL LG  +      L +      I  ++ SA   EK+ E   ++    +  L 
Sbjct: 53  KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLEL--VRERNNIIPLL 110

Query: 114 ADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF 173
            D       +   + V       +++ +                 +       LK  G  
Sbjct: 111 FDASKPWKYSGIVEKVD------LIYQDIAQKNQI--------EILKANAEFFLKEKGEV 156

Query: 174 I 174
           +
Sbjct: 157 V 157

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 11/155 (7%)

Query: 20  TSAYLDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYND 79
            +AY                 W   Y H   L          VLE+G G +  +  +   
Sbjct: 17  PAAYDAADTHLRILGKPVMERWETPYMH--ALAAAASSKGGRVLEVGFGMAIAASKVQEA 74

Query: 80  GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF 139
            I     I+ +    +++++                ++ L    +     +     + + 
Sbjct: 75  PIDEHWIIECNDGVFQRLRDWA--------PRQTHKVIPLKGLWEDVAPTLPDGHFDGIL 126

Query: 140 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 174
            ++         T            R+LKP G+  
Sbjct: 127 YDTYPLSEETWHTHQFNFIKNH-AFRLLKPGGVLT 160

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 15/168 (8%), Positives = 37/168 (22%), Gaps = 13/168 (7%)

Query: 28  YWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSE-------GLYNDG 80
           + +     +   E++              K    +L +G G   +           Y   
Sbjct: 10  FLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGV 69

Query: 81  ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFV 140
                 ++ SA  + K +E +      E                      E    + + +
Sbjct: 70  CINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHM 129

Query: 141 NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFF 188
                +        K        H +L  +   + +           +
Sbjct: 130 IQMLYYVKDIPATLKFF------HSLLGTNAKMLIIVVSGSSGWDKLW 171

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 19/136 (13%)

Query: 41  WLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGL--YNDGITAITCIDLSAVAVEKMQ 98
           +  DY  F       I     +++ GCG   L   L       +  T ID     + + +
Sbjct: 10  YNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR 69

Query: 99  ERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMA 158
           E   L  Y    +      ++  ++     +        L           PET+     
Sbjct: 70  ELFRLLPYDSEFLEGDAT-EIELNDKYDIAIC----HAFLL------HMTTPETM----- 113

Query: 159 MLEGVHRVLKPDGLFI 174
            L+ +   +K  G  I
Sbjct: 114 -LQKMIHSVKKGGKII 128

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 23/190 (12%), Positives = 45/190 (23%), Gaps = 18/190 (9%)

Query: 27  HYWDERFSDE-EHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAIT 85
            Y+D  +    E  +   D+       +   +    VL+L CG    +  L   G   + 
Sbjct: 10  EYYDTIYRRRIERVKAEIDFVE-EIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVG 68

Query: 86  CIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDP 145
                 +     ++        E    +   +      D   +                 
Sbjct: 69  LDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMF---------------F 113

Query: 146 WNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDG 205
                     +  +   V   LKP G+FI   F    +              E       
Sbjct: 114 STIMYFDEEDLRKLFSKVAEALKPGGVFI-TDFPCWFYGGRDGPVVWNEQKGEEKLVIMD 172

Query: 206 FHYFFYILRK 215
           +      ++K
Sbjct: 173 WREVEPAVQK 182

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.7 bits (82), Expect = 0.004
 Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 31/142 (21%)

Query: 43  KDYSHFRHLVQPHIKPNSSVLELGCGN----SRLSEGLYNDGITAITCIDLSAVAVEKMQ 98
           KD +   H     I P + VLE G G+      L   +   G   +   +  A   E  +
Sbjct: 83  KDAAQIVHEG--DIFPGARVLEAGAGSGALTLSLLRAVGPAGQ--VISYEQRADHAEHAR 138

Query: 99  E---RLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTK 155
                   +     +++ +D+ D    +   D            ++   PW         
Sbjct: 139 RNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRA---------VLDMLAPW--------- 180

Query: 156 VMAMLEGVHRVLKPDGLFISVS 177
              +L+ V R+L   G+ +   
Sbjct: 181 --EVLDAVSRLLVAGGVLMVYV 200

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 30/140 (21%)

Query: 43  KDYSHFRHLVQPHIKPNSSVLELGCGN----SRLSEGLYNDGITAITCIDLSAVAVEKMQ 98
            D S+   +++  ++P   +LE+G G+    S +   L   G   +T ++     ++K  
Sbjct: 72  IDASYI--IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGT--LTVVERDEDNLKKAM 127

Query: 99  ERLL-LKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVM 157
           + L        V+   +D+ D                   +  +  DPWN          
Sbjct: 128 DNLSEFYDIGNVRTSRSDIADFISDQMYD----------AVIADIPDPWN---------- 167

Query: 158 AMLEGVHRVLKPDGLFISVS 177
             ++ +  ++KP  +     
Sbjct: 168 -HVQKIASMMKPGSVATFYL 186

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.87
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.87
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.87
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.83
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.83
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.82
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.82
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.81
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.81
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.81
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.81
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.79
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.78
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.78
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.75
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.74
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.74
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.73
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.73
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.73
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.72
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.71
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.71
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.69
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.68
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.67
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.67
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.67
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.66
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.66
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.64
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.64
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.63
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.63
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.63
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.62
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.61
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.61
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.6
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.6
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.59
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.59
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.57
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.56
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.56
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.54
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.53
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.53
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.53
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.52
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.51
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.5
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.5
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.49
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.47
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.44
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.42
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.41
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.35
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.35
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.35
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.34
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.34
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.28
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.23
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.2
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.2
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.2
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.18
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.15
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.14
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.07
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.04
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.01
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.98
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.97
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.94
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.91
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.91
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.9
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.81
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.8
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.79
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.75
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.7
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.68
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.67
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.63
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.63
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.62
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.57
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.52
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.51
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.46
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.27
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.26
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.18
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.09
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.69
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.68
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.68
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.59
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.59
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.47
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.45
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.41
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.37
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.31
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.29
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.29
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.28
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.23
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.16
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.08
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.06
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.03
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.02
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.01
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.92
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.83
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.66
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.66
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.5
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.36
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.29
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.28
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	95.98
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.96
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	95.91
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.91
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.84
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.84
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	95.59
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.33
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.16
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.78
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.72
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.5
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.32
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.16
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.92
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	93.75
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	93.14
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	92.65
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	92.22
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	92.19
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	92.07
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	90.96
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	90.95
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.87
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.86
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	90.77
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	90.77
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.52
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	90.45
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	90.22
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	90.15
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	90.1
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	89.95
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	89.79
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	89.71
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	89.24
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	88.98
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	88.94
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	88.32
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	88.28
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	87.98
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	87.75
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	87.57
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	87.33
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	87.14
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	86.56
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	86.52
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	86.27
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	86.27
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	86.19
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	85.81
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	85.72
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	85.68
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	85.07
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	84.96
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	84.89
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	84.85
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	84.19
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	84.13
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	84.06
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	83.4
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	82.8
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	82.55
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	82.03
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	81.87
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	81.58
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	81.13
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	81.1
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	80.46
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	80.28
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	80.12

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=3e-22  Score=162.09  Aligned_cols=121  Identities=26%  Similarity=0.362  Sum_probs=106.2

Q ss_pred             chHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCC
Q 025039           45 YSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSND  124 (259)
Q Consensus        45 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  124 (259)
                      ...+..++..+++++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|++++...+ ..+.++++|+.+++++++
T Consensus        24 ~~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~-~~~~~~~~d~~~l~~~~~  101 (226)
T d1ve3a1          24 IETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFEDK  101 (226)
T ss_dssp             HHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCTT
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhcccc-ccccccccccccccccCc
Confidence            4456677777888899999999999999999999987 89999999999999999987766 367888999999998889


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +||+|+|..+++++             ...++..+|+++.++|||||++++.....
T Consensus       102 ~fD~I~~~~~l~~~-------------~~~d~~~~l~~i~~~LkpgG~lii~~~~~  144 (226)
T d1ve3a1         102 TFDYVIFIDSIVHF-------------EPLELNQVFKEVRRVLKPSGKFIMYFTDL  144 (226)
T ss_dssp             CEEEEEEESCGGGC-------------CHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CceEEEEecchhhC-------------ChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence            99999999999887             44678899999999999999999876543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.87  E-value=1.4e-22  Score=164.97  Aligned_cols=110  Identities=18%  Similarity=0.311  Sum_probs=100.2

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .++++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|++++...+.+++.+.++|+.++++++++||+|+|..+
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~   90 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIA   90 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESC
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccccc
Confidence            467889999999999999999999987 9999999999999999999988888899999999999988999999999999


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++++               .++..+++++.++|||||++++.++..
T Consensus        91 l~~~---------------~d~~~~l~~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_          91 AHHF---------------PNPASFVSEAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             GGGC---------------SCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cccc---------------CCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            9877               567789999999999999999987643

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=1.7e-22  Score=165.19  Aligned_cols=110  Identities=24%  Similarity=0.335  Sum_probs=101.2

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .++++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|++++...+++++.+.++|+.++++++++||+|+|..+
T Consensus        13 ~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~   91 (234)
T d1xxla_          13 ECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYA   91 (234)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeece
Confidence            467999999999999999999999987 9999999999999999999988888899999999999999999999999999


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++++               .++..+++++.++|||||++++.++..
T Consensus        92 l~~~---------------~d~~~~l~~~~r~LkpgG~~~~~~~~~  122 (234)
T d1xxla_          92 AHHF---------------SDVRKAVREVARVLKQDGRFLLVDHYA  122 (234)
T ss_dssp             GGGC---------------SCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             eecc---------------cCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence            9876               467899999999999999999976643

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.83  E-value=1.3e-20  Score=154.87  Aligned_cols=136  Identities=18%  Similarity=0.246  Sum_probs=107.5

Q ss_pred             ccchhhhcCCCCcccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC
Q 025039           26 PHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG  105 (259)
Q Consensus        26 ~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~  105 (259)
                      +++||..+.....+  ......+...+.....++.+|||+|||+|..+..+++.|. +++|+|+|+.|++.|++++...+
T Consensus         7 A~~YD~l~~~~~~y--~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~   83 (246)
T d1y8ca_           7 AHIYDKLIRADVDY--KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQG   83 (246)
T ss_dssp             HHHHHHHTTCSCCH--HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCCCH--HHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccC
Confidence            56777766543222  1112334455555555678999999999999999999998 89999999999999999988777


Q ss_pred             CCCeEEEEcccCCCcCCCCceeEEEec-ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          106 YKEVKVLEADMLDLPFSNDCFDVVIEK-ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       106 ~~~v~~~~~d~~~~~~~~~~fD~V~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      . +++++++|+.+++++ ++||+|+|. .+++++            .+..++..++++++++|+|||.|++...
T Consensus        84 ~-~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~~------------~~~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_          84 L-KPRLACQDISNLNIN-RKFDLITCCLDSTNYI------------IDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             C-CCEEECCCGGGCCCS-CCEEEEEECTTGGGGC------------CSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             c-cceeeccchhhhccc-ccccccceeeeeeecc------------CCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence            5 799999999988754 689999985 566665            3567899999999999999999997543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.83  E-value=2.9e-20  Score=148.07  Aligned_cols=133  Identities=21%  Similarity=0.371  Sum_probs=108.4

Q ss_pred             CCccchhhhcCCCCcccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhh
Q 025039           24 LDPHYWDERFSDEEHYEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL  103 (259)
Q Consensus        24 ~~~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~  103 (259)
                      .+..||.+.|......      ..+...+. .+ ++.+|||+|||+|..+..++++|. +|+|+|+|+.+++.++++...
T Consensus         4 ~d~~~~~~~~~~~~~~------~~~~~~~~-~~-~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~   74 (198)
T d2i6ga1           4 RDENYFTEKYGLTRTH------SDVLAAAK-VV-APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAA   74 (198)
T ss_dssp             CSHHHHHHHHCBCCCC------HHHHHHHT-TS-CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHH
T ss_pred             chHHHHhcccCCCCCH------HHHHHHcc-cC-CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhh
Confidence            4567777777543222      23333322 33 345999999999999999999998 899999999999999999998


Q ss_pred             cCCCCeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          104 KGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       104 ~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .+++++.+...|+..+++ +++||+|++..+++++             +......+++++.++|+|||++++.++.
T Consensus        75 ~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~-------------~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1          75 EGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFL-------------EAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             TTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGS-------------CTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             ccccchhhhheecccccc-cccccEEEEeeeeecC-------------CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            888889999999988775 5789999999999887             4467789999999999999999997653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=1.8e-20  Score=154.23  Aligned_cols=136  Identities=19%  Similarity=0.358  Sum_probs=105.8

Q ss_pred             ccchhhhcCCCCcccccccchHHHHhhcccC-CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc
Q 025039           26 PHYWDERFSDEEHYEWLKDYSHFRHLVQPHI-KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK  104 (259)
Q Consensus        26 ~~~w~~~~~~~~~~~w~~~~~~~~~~l~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~  104 (259)
                      +++|+..|..... .+......+..++.... .++.+|||+|||+|..+..+++.|. +|+|+|+|+.|++.|++++...
T Consensus         9 a~~Yd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~   86 (251)
T d1wzna1           9 AEYYDTIYRRRIE-RVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKER   86 (251)
T ss_dssp             GGGHHHHTHHHHH-THHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhh-hHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccc
Confidence            6778877754211 11112223444444333 4567899999999999999999988 8999999999999999998887


Q ss_pred             CCCCeEEEEcccCCCcCCCCceeEEEec-ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          105 GYKEVKVLEADMLDLPFSNDCFDVVIEK-ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       105 ~~~~v~~~~~d~~~~~~~~~~fD~V~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +. ++.+.++|+.+++++ ++||+|+|. .+++++             +..+..++|+++.++|||||++++...
T Consensus        87 ~~-~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~-------------~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1          87 NL-KIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYF-------------DEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             TC-CCEEEESCGGGCCCC-SCEEEEEECSSGGGGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cc-cchheehhhhhcccc-cccchHhhhhhhhhcC-------------ChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            75 799999999998876 589999986 455554             446788999999999999999998543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-20  Score=153.48  Aligned_cols=142  Identities=11%  Similarity=0.227  Sum_probs=112.4

Q ss_pred             CCccchhhhcCCCCcccccc--cchHHHHhhcc--cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHH
Q 025039           24 LDPHYWDERFSDEEHYEWLK--DYSHFRHLVQP--HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQE   99 (259)
Q Consensus        24 ~~~~~w~~~~~~~~~~~w~~--~~~~~~~~l~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~   99 (259)
                      .+.++|+++|...+. .|..  ..+.+...+..  .++++.+|||+|||+|..+..|++.|. +|+|+|+|+.+++.|++
T Consensus         8 ~~~e~W~~~~~~~~~-~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1           8 LTLEEWQDKWVNGKT-AFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFT   85 (229)
T ss_dssp             CCHHHHHHHHHHTCC-TTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHH
T ss_pred             CCHHHHHHHHccCCC-CCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Confidence            457899999977543 3433  34455555443  245788999999999999999999999 99999999999999998


Q ss_pred             HHhhcC-----------------CCCeEEEEcccCCCc-CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHH
Q 025039          100 RLLLKG-----------------YKEVKVLEADMLDLP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLE  161 (259)
Q Consensus       100 ~~~~~~-----------------~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  161 (259)
                      +....+                 ..++++.++|+.+++ ...+.||+|+...+++++             +..+...+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~-------------~~~~r~~~~~  152 (229)
T d2bzga1          86 EQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAI-------------NPGDRKCYAD  152 (229)
T ss_dssp             HTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTS-------------CGGGHHHHHH
T ss_pred             HhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEec-------------cchhhHHHHH
Confidence            764321                 135889999998864 456789999999999887             4467789999


Q ss_pred             HHHhcccCCcEEEEEecCC
Q 025039          162 GVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       162 ~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++.++|||||.+++.++..
T Consensus       153 ~~~~~LkpgG~~~l~~~~~  171 (229)
T d2bzga1         153 TMFSLLGKKFQYLLCVLSY  171 (229)
T ss_dssp             HHHHTEEEEEEEEEEEEEC
T ss_pred             HHHhhcCCcceEEEEEccc
Confidence            9999999999998877643

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.81  E-value=2.5e-20  Score=156.42  Aligned_cols=109  Identities=19%  Similarity=0.379  Sum_probs=98.0

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      .++++.+|||+|||+|..+..+++. +. +|+|+|+|+.+++.|++++...++. ++++.++|+.++++++++||+|++.
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~  142 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ  142 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhcc
Confidence            3578899999999999999999887 55 8999999999999999999988876 5999999999999988999999999


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .+++|+               .+...+++++.++|||||++++.++.
T Consensus       143 ~~l~h~---------------~d~~~~l~~~~~~LkpgG~l~~~~~~  174 (282)
T d2o57a1         143 DAFLHS---------------PDKLKVFQECARVLKPRGVMAITDPM  174 (282)
T ss_dssp             SCGGGC---------------SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhhc---------------cCHHHHHHHHHHhcCCCcEEEEEEee
Confidence            998877               45678999999999999999997653

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.2e-20  Score=150.39  Aligned_cols=110  Identities=17%  Similarity=0.247  Sum_probs=97.6

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .++.+|||+|||+|..+..++..++.+|+|+|+|+.|++.|++++...+.+++++.++|+.++++++++||+|++..+++
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            45678999999999999998777666899999999999999999988777678999999999888888999999999999


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |+             ..++..+++++++++|+|||.+++.+..
T Consensus       139 h~-------------~~~~~~~~l~~i~~~Lk~~G~~~i~~~~  168 (222)
T d2ex4a1         139 HL-------------TDQHLAEFLRRCKGSLRPNGIIVIKDNM  168 (222)
T ss_dssp             GS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cc-------------hhhhhhhHHHHHHHhcCCcceEEEEEcc
Confidence            87             4456788999999999999999997643

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=1.8e-20  Score=153.34  Aligned_cols=111  Identities=27%  Similarity=0.413  Sum_probs=93.4

Q ss_pred             HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCce
Q 025039           47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCF  126 (259)
Q Consensus        47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  126 (259)
                      .+..++...++++.+|||+|||+|..+..+++.|. +|+|+|+|+.|++.|+++..      ..++.+|+.++++++++|
T Consensus        31 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~------~~~~~~~~~~l~~~~~~f  103 (246)
T d2avna1          31 LIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV------KNVVEAKAEDLPFPSGAF  103 (246)
T ss_dssp             HHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC------SCEEECCTTSCCSCTTCE
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc------cccccccccccccccccc
Confidence            34455666777889999999999999999999988 89999999999999998742      235678999999888999


Q ss_pred             eEEEec-ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          127 DVVIEK-ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       127 D~V~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |+|+|. .+++|+               .+..++|+++.++|||||++++..++
T Consensus       104 D~ii~~~~~~~~~---------------~d~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1         104 EAVLALGDVLSYV---------------ENKDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             EEEEECSSHHHHC---------------SCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             cceeeecchhhhh---------------hhHHHHHHHHHhhcCcCcEEEEEECC
Confidence            999985 567766               45677999999999999999987653

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.81  E-value=9.4e-20  Score=150.44  Aligned_cols=119  Identities=23%  Similarity=0.303  Sum_probs=100.9

Q ss_pred             hhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcC-CCCceeE
Q 025039           51 LVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPF-SNDCFDV  128 (259)
Q Consensus        51 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~-~~~~fD~  128 (259)
                      ++..+++++.+|||+|||+|..+..+++.+..+|+|+|+|+.|++.|++++...+.. ++.+.++|+...++ ..++||+
T Consensus        17 lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~   96 (252)
T d1ri5a_          17 LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDV   96 (252)
T ss_dssp             HHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEE
T ss_pred             HHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceE
Confidence            445567889999999999999999999988768999999999999999998776644 48899999977654 4568999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      |+|..++|+++           .+.++...+++++.++|+|||++++..++.
T Consensus        97 V~~~~~l~~~~-----------~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~  137 (252)
T d1ri5a_          97 ISSQFSFHYAF-----------STSESLDIAQRNIARHLRPGGYFIMTVPSR  137 (252)
T ss_dssp             EEEESCGGGGG-----------SSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             EEEcceeeecC-----------CCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence            99999998863           245778899999999999999999877653

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.1e-19  Score=149.36  Aligned_cols=108  Identities=22%  Similarity=0.258  Sum_probs=95.0

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecc
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      .+.++.+|||+|||+|..+..+++....+|+|+|+|+.+++.|+++....++.+ +++.++|+.++. .+++||+|+|..
T Consensus        30 ~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~-~~~~fD~v~~~~  108 (245)
T d1nkva_          30 RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-ANEKCDVAACVG  108 (245)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-CSSCEEEEEEES
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-ccCceeEEEEEe
Confidence            367899999999999999999988643499999999999999999999888765 999999998874 578999999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +++++               .+...++++++++|||||++++.++
T Consensus       109 ~~~~~---------------~d~~~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_         109 ATWIA---------------GGFAGAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             CGGGT---------------SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             hhhcc---------------CCHHHHHHHHHHHcCcCcEEEEEec
Confidence            88776               4567899999999999999999754

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.78  E-value=5.4e-19  Score=143.32  Aligned_cols=119  Identities=20%  Similarity=0.265  Sum_probs=97.5

Q ss_pred             HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcC--CC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCC
Q 025039           47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDG--IT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFS  122 (259)
Q Consensus        47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~  122 (259)
                      .+..++..+++++.+|||+|||+|..+..+++..  +. +|+|+|+|+.|++.|+++++..+.. .+.+..+|+.+.+  
T Consensus        28 ~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--  105 (225)
T d1im8a_          28 AIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--  105 (225)
T ss_dssp             HHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--
T ss_pred             HHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--
Confidence            3445556678889999999999999999998752  23 9999999999999999998766643 3677778876655  


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ...+|+|++..+++++             +.++..++|+++.++|||||.+++.++..
T Consensus       106 ~~~~d~i~~~~~l~~~-------------~~~d~~~~l~~i~~~LkpgG~li~~~~~~  150 (225)
T d1im8a_         106 IKNASMVILNFTLQFL-------------PPEDRIALLTKIYEGLNPNGVLVLSEKFR  150 (225)
T ss_dssp             CCSEEEEEEESCGGGS-------------CGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             cccceeeEEeeecccc-------------ChhhHHHHHHHHHHhCCCCceeecccccc
Confidence            4578999999888876             44678899999999999999999987654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.78  E-value=2.6e-19  Score=141.53  Aligned_cols=112  Identities=16%  Similarity=0.171  Sum_probs=94.4

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC------------CCeEEEEcccCCCc-C
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY------------KEVKVLEADMLDLP-F  121 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~-~  121 (259)
                      .++++.+|||+|||+|..+..|+++|. +|+|+|+|+.|++.|+++++..+.            ..+.+..+|+.+++ .
T Consensus        17 ~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~   95 (201)
T d1pjza_          17 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   95 (201)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence            366889999999999999999999999 999999999999999998765421            23577888887765 3


Q ss_pred             CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       122 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ....||+|++..+++++             ...+...+++++.++|||||.+++..+..
T Consensus        96 ~~~~~D~i~~~~~l~~l-------------~~~~~~~~~~~i~~~LkpgG~l~l~~~~~  141 (201)
T d1pjza_          96 DIGHCAAFYDRAAMIAL-------------PADMRERYVQHLEALMPQACSGLLITLEY  141 (201)
T ss_dssp             HHHSEEEEEEESCGGGS-------------CHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred             cccceeEEEEEeeeEec-------------chhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence            34679999999999887             45678899999999999999998876654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.75  E-value=1.5e-18  Score=143.36  Aligned_cols=106  Identities=17%  Similarity=0.233  Sum_probs=93.4

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      ++.+|||+|||+|+.+..++..+..+|+++|+|+.|++.|++++...  +.+++.++|+.++++++++||+|++..+++|
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~h  170 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPPNTYDLIVIQWTAIY  170 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc--ccceeEEccccccccCCCccceEEeeccccc
Confidence            56799999999999999888776658999999999999999987643  3589999999998888889999999999998


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +             ..++..+++++++++|+|||++++.+.
T Consensus       171 l-------------~d~d~~~~l~~~~~~LkpgG~iii~e~  198 (254)
T d1xtpa_         171 L-------------TDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             S-------------CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             c-------------chhhhHHHHHHHHHhcCCCcEEEEEec
Confidence            8             446678999999999999999998764

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.74  E-value=4.6e-18  Score=133.92  Aligned_cols=116  Identities=19%  Similarity=0.265  Sum_probs=95.8

Q ss_pred             chHHHHhhc--ccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcC
Q 025039           45 YSHFRHLVQ--PHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPF  121 (259)
Q Consensus        45 ~~~~~~~l~--~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~  121 (259)
                      ...+..++.  ..+.++.+|||+|||+|.+++.+++.+. +|+++|+++.+++.|+++++..++. +++++++|+.+...
T Consensus        18 ~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~   96 (186)
T d1l3ia_          18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC   96 (186)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc
Confidence            344544333  2456889999999999999999998876 9999999999999999999999985 69999999887666


Q ss_pred             CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       122 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +...||.|++....+                  ...++++.+.+.|||||++++....
T Consensus        97 ~~~~~D~v~~~~~~~------------------~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          97 KIPDIDIAVVGGSGG------------------ELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             TSCCEEEEEESCCTT------------------CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             ccCCcCEEEEeCccc------------------cchHHHHHHHHHhCcCCEEEEEeec
Confidence            668999999876543                  2357899999999999999987654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.74  E-value=2.5e-18  Score=139.36  Aligned_cols=107  Identities=21%  Similarity=0.320  Sum_probs=90.9

Q ss_pred             hcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEe
Q 025039           52 VQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIE  131 (259)
Q Consensus        52 l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  131 (259)
                      +.... ++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.|+++..    .++.+.++++.++++ +++||+|++
T Consensus        15 ~~~~~-~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~-~~~fD~I~~   87 (225)
T d2p7ia1          15 FTPFF-RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQL-PRRYDNIVL   87 (225)
T ss_dssp             HGGGC-CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCC-SSCEEEEEE
T ss_pred             hhhhC-CCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc----ccccccccccccccc-ccccccccc
Confidence            34444 466899999999999999999987 89999999999999998754    368999999988775 578999999


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHH-hcccCCcEEEEEecCC
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVH-RVLKPDGLFISVSFGQ  180 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~  180 (259)
                      ..+++|+               .++..++.++. ++|+|||.+++..++.
T Consensus        88 ~~vleh~---------------~d~~~~l~~i~~~~Lk~gG~l~i~~pn~  122 (225)
T d2p7ia1          88 THVLEHI---------------DDPVALLKRINDDWLAEGGRLFLVCPNA  122 (225)
T ss_dssp             ESCGGGC---------------SSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             cceeEec---------------CCHHHHHHHHHHHhcCCCceEEEEeCCc
Confidence            9999887               46678899998 7999999999987643

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.73  E-value=6.2e-18  Score=141.62  Aligned_cols=106  Identities=24%  Similarity=0.305  Sum_probs=92.8

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      +.++.+|||+|||+|..+..+++..+.  +|+|+|+|+.+++.|++++...+. ++++.++|+.+++++ ++||+|+|..
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~~-~~fD~v~~~~  102 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELN-DKYDIAICHA  102 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCS-SCEEEEEEES
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-ccccccccccccccc-CCceEEEEeh
Confidence            457789999999999999999886432  899999999999999999887765 689999999988765 5799999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +++++               .++..+++++.++|||||.+++.++
T Consensus       103 ~l~~~---------------~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1         103 FLLHM---------------TTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             CGGGC---------------SSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hhhcC---------------CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            99877               4567899999999999999998774

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=5.2e-18  Score=135.57  Aligned_cols=98  Identities=23%  Similarity=0.337  Sum_probs=85.8

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      .++.+|||+|||+|.++..+.     +++|+|+|+.+++.++++       ++.+.++|+.++++++++||+|++..+++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  102 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTIC  102 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc-------ccccccccccccccccccccccccccccc
Confidence            356689999999999887763     578999999999999874       57899999999998889999999999998


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      ++               .++..+++++.++|+|||.+++.++...
T Consensus       103 h~---------------~d~~~~l~~~~~~L~pgG~l~i~~~~~~  132 (208)
T d1vlma_         103 FV---------------DDPERALKEAYRILKKGGYLIVGIVDRE  132 (208)
T ss_dssp             GS---------------SCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             cc---------------cccccchhhhhhcCCCCceEEEEecCCc
Confidence            87               4567899999999999999999887654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=5.6e-18  Score=139.37  Aligned_cols=111  Identities=17%  Similarity=0.256  Sum_probs=92.9

Q ss_pred             HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCce
Q 025039           47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCF  126 (259)
Q Consensus        47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  126 (259)
                      .....+.....++.+|||+|||+|.+++.+++.|. +|+|+|+|+.+++.|+++++.+++ ++.+.++|+.+ ..+.++|
T Consensus       109 l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~-~~~~~~~d~~~-~~~~~~f  185 (254)
T d2nxca1         109 LALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV-RPRFLEGSLEA-ALPFGPF  185 (254)
T ss_dssp             HHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC-CCEEEESCHHH-HGGGCCE
T ss_pred             HHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCC-ceeEEeccccc-ccccccc
Confidence            34455666678899999999999999999999887 899999999999999999999887 56788888765 3456789


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |+|+++...                  .....+++.+.++|||||++++..+
T Consensus       186 D~V~ani~~------------------~~l~~l~~~~~~~LkpGG~lilSgi  219 (254)
T d2nxca1         186 DLLVANLYA------------------ELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             EEEEEECCH------------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chhhhcccc------------------ccHHHHHHHHHHhcCCCcEEEEEec
Confidence            999986433                  3456788999999999999998754

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=2.5e-17  Score=130.48  Aligned_cols=108  Identities=18%  Similarity=0.353  Sum_probs=92.0

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCCCcCCCCceeEEEecc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      ..++.+|||+|||+|.++..+++.++ +++++|+|+.+++.++++++.+++.+  +++..+|+.+ .+++++||+|+++.
T Consensus        50 ~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~  127 (194)
T d1dusa_          50 VDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNP  127 (194)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECC
T ss_pred             cCCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcc
Confidence            35789999999999999999998877 99999999999999999998887754  7889999877 45678999999998


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +++..              ......+++.+.++|+|||.++++...
T Consensus       128 p~~~~--------------~~~~~~~l~~~~~~LkpgG~l~i~~~~  159 (194)
T d1dusa_         128 PIRAG--------------KEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             CSTTC--------------HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             cEEec--------------chhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence            87543              244678999999999999999876543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=2.8e-17  Score=137.33  Aligned_cols=114  Identities=15%  Similarity=0.226  Sum_probs=94.8

Q ss_pred             HHHhhcc-cCCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCC
Q 025039           48 FRHLVQP-HIKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSND  124 (259)
Q Consensus        48 ~~~~l~~-~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~  124 (259)
                      +..++.. .++++.+|||||||.|.++..+++. |. +|+|+|+|+.+++.|+++++..++.. +.+...|..++   ++
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~  116 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AE  116 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CC
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---cc
Confidence            3444442 3678999999999999999999877 55 99999999999999999999888754 67777776654   36


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +||.|++..+++|+             +..+...+++++.++|||||++++.+.
T Consensus       117 ~fD~i~si~~~eh~-------------~~~~~~~~f~~i~~~LkpgG~~~i~~i  157 (280)
T d2fk8a1         117 PVDRIVSIEAFEHF-------------GHENYDDFFKRCFNIMPADGRMTVQSS  157 (280)
T ss_dssp             CCSEEEEESCGGGT-------------CGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             chhhhhHhhHHHHh-------------hhhhHHHHHHHHHhccCCCceEEEEEe
Confidence            89999999999887             345678999999999999999998653

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=3.3e-17  Score=136.20  Aligned_cols=100  Identities=27%  Similarity=0.418  Sum_probs=86.5

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      ..++.+|||+|||+|..+..+++.++. +++|+|+|+.|++.|+++.     +++.+.++|+.++++++++||+|++..+
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----~~~~~~~~d~~~l~~~~~sfD~v~~~~~  156 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDTSMDAIIRIYA  156 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----ccccceeeehhhccCCCCCEEEEeecCC
Confidence            346789999999999999999999776 8999999999999998764     4789999999999999999999998655


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      +++                      ++++.++|||||++++.+++..+
T Consensus       157 ~~~----------------------~~e~~rvLkpgG~l~~~~p~~~~  182 (268)
T d1p91a_         157 PCK----------------------AEELARVVKPGGWVITATPGPRH  182 (268)
T ss_dssp             CCC----------------------HHHHHHHEEEEEEEEEEEECTTT
T ss_pred             HHH----------------------HHHHHHHhCCCcEEEEEeeCCcc
Confidence            432                      46789999999999999887644

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=9.6e-18  Score=138.10  Aligned_cols=147  Identities=18%  Similarity=0.189  Sum_probs=101.2

Q ss_pred             CCCccchhhhcCCCCccccccc-----chHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHH
Q 025039           23 YLDPHYWDERFSDEEHYEWLKD-----YSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKM   97 (259)
Q Consensus        23 ~~~~~~w~~~~~~~~~~~w~~~-----~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a   97 (259)
                      |...+||+..|...........     .+.+.+.+.....++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|
T Consensus        11 f~~~~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a   90 (257)
T d2a14a1          11 FLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREEL   90 (257)
T ss_dssp             CCHHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHH
T ss_pred             cChHHHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHH
Confidence            3446788888876432110010     11233333344456789999999999998888877665899999999999999


Q ss_pred             HHHHhhcCCCC-----------------------------e-EEEEccc----CCCcCCCCceeEEEecceeeeeeeCCC
Q 025039           98 QERLLLKGYKE-----------------------------V-KVLEADM----LDLPFSNDCFDVVIEKATMEVLFVNSG  143 (259)
Q Consensus        98 ~~~~~~~~~~~-----------------------------v-~~~~~d~----~~~~~~~~~fD~V~~~~~l~~~~~~~~  143 (259)
                      +++++..+...                             + .....+.    ...+.+.++||+|++..+++++.    
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~----  166 (257)
T d2a14a1          91 EKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC----  166 (257)
T ss_dssp             HHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC----
T ss_pred             HHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhc----
Confidence            99876543211                             0 1111111    11245678899999999998872    


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          144 DPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       144 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                             ...++...+++++.++|||||++++.++..
T Consensus       167 -------~~~~~~~~~l~~i~~~LkpGG~li~~~~~~  196 (257)
T d2a14a1         167 -------CSLDAYRAALCNLASLLKPGGHLVTTVTLR  196 (257)
T ss_dssp             -------SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             -------ccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence                   234678899999999999999999987643

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=7e-17  Score=133.87  Aligned_cols=168  Identities=13%  Similarity=0.183  Sum_probs=116.7

Q ss_pred             ccchhhhcCCC-CcccccccchHHHHhh-cccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHh
Q 025039           26 PHYWDERFSDE-EHYEWLKDYSHFRHLV-QPHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLL  102 (259)
Q Consensus        26 ~~~w~~~~~~~-~~~~w~~~~~~~~~~l-~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~  102 (259)
                      .+||.-.|... ..+-.......+.... ......+.+|||+|||+|..++.++...++ +|+++|+|+.+++.|++|+.
T Consensus        74 ~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~  153 (274)
T d2b3ta1          74 REFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ  153 (274)
T ss_dssp             EEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH
T ss_pred             EEEeeeEEEEeccccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHH
Confidence            55666666542 2222223333344333 333346688999999999999999998777 99999999999999999999


Q ss_pred             hcCCCCeEEEEcccCCCcCCCCceeEEEecceeeee----------eeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcE
Q 025039          103 LKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL----------FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL  172 (259)
Q Consensus       103 ~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  172 (259)
                      .+++.++.++++|+.+ +.++++||+|++++++-..          ..++...+....++.....++++.+.++|+|||.
T Consensus       154 ~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~  232 (274)
T d2b3ta1         154 HLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGF  232 (274)
T ss_dssp             HHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEE
T ss_pred             HhCcccceeeeccccc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCE
Confidence            9998789999999987 3456789999999886211          1111122222344556778899999999999999


Q ss_pred             EEEE-ecCCccccccccCCCCCC
Q 025039          173 FISV-SFGQPHFRRPFFNAPQFT  194 (259)
Q Consensus       173 l~~~-~~~~~~~~~~~~~~~~~~  194 (259)
                      +++. .+.+......++...+|.
T Consensus       233 l~lEig~~q~~~v~~~l~~~gf~  255 (274)
T d2b3ta1         233 LLLEHGWQQGEAVRQAFILAGYH  255 (274)
T ss_dssp             EEEECCSSCHHHHHHHHHHTTCT
T ss_pred             EEEEECchHHHHHHHHHHHCCCC
Confidence            9984 233333334455555554

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=1.6e-16  Score=133.18  Aligned_cols=117  Identities=12%  Similarity=0.137  Sum_probs=94.3

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecc
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      .+++|.+|||||||.|.++.++++....+|+|+++|++.++.+++++...++.+ +.+...|..   ..+++||.|++..
T Consensus        58 ~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~~~~~fD~i~sie  134 (291)
T d1kpia_          58 NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EFDEPVDRIVSLG  134 (291)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GCCCCCSEEEEES
T ss_pred             CCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---ccccccceEeech
Confidence            467899999999999999999987633499999999999999999999888765 777777753   3467899999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +++|+....+.      ......+.+++++.++|||||++++.++..
T Consensus       135 ~~eH~~~~~~~------~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~  175 (291)
T d1kpia_         135 AFEHFADGAGD------AGFERYDTFFKKFYNLTPDDGRMLLHTITI  175 (291)
T ss_dssp             CGGGTTCCSSC------CSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred             hHHhcchhhhh------hHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence            99887211000      123567899999999999999999977654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.67  E-value=2e-16  Score=130.32  Aligned_cols=107  Identities=18%  Similarity=0.253  Sum_probs=92.2

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .+..+|||+|||+|..+..++++.+. +++++|+ +.+++.+++++...++. +++++.+|+.+.. + .+||+|++..+
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~-~-~~~D~v~~~~v  155 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL-P-RKADAIILSFV  155 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC-S-SCEEEEEEESC
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc-c-cchhheeeccc
Confidence            45689999999999999999999877 8999998 67899999999888765 4999999987632 2 57999999999


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +|++             +.++..++|++++++|||||++++.+..
T Consensus       156 lh~~-------------~d~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         156 LLNW-------------PDHDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             GGGS-------------CHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cccC-------------CchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            9887             4567789999999999999999998754

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2.3e-16  Score=132.56  Aligned_cols=112  Identities=21%  Similarity=0.266  Sum_probs=84.4

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC----CeEEEEcccCCCc---CCCCceeEEE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK----EVKVLEADMLDLP---FSNDCFDVVI  130 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~v~~~~~d~~~~~---~~~~~fD~V~  130 (259)
                      ++.+|||+|||+|..+..|++.|. +|+|+|+|+.|++.|+++....+..    ...+...++..+.   ...++||+|+
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~  134 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  134 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEE
Confidence            467999999999999999999998 8999999999999999987665432    1334445543321   1346899999


Q ss_pred             ec-ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          131 EK-ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       131 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |. .++.|+....        ....+...+|+++.++|||||+|++...
T Consensus       135 ~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         135 CLGNSFAHLPDSK--------GDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             ECSSCGGGSCCTT--------SSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EecCchhhcCCcc--------cChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence            86 4666652110        1236788999999999999999998654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=2.5e-16  Score=131.60  Aligned_cols=109  Identities=17%  Similarity=0.252  Sum_probs=92.9

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecc
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      .+++|.+|||||||.|..++++++....+|+|+++|+..++.|++++...+..+ +++..+|..+++   ++||.|++..
T Consensus        59 ~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~  135 (285)
T d1kpga_          59 GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIG  135 (285)
T ss_dssp             TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred             CCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeeh
Confidence            457899999999999999998877633399999999999999999988877654 899999987764   6899999999


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +++|+             +......+++++.++|||||++++.++.
T Consensus       136 ~~eh~-------------~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         136 AFEHF-------------GHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             CGGGT-------------CTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             hhhhc-------------CchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence            99887             2345678999999999999999986653

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.66  E-value=3.7e-16  Score=124.35  Aligned_cols=110  Identities=18%  Similarity=0.259  Sum_probs=90.2

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEeccee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATM  135 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l  135 (259)
                      +-.|||||||+|..+..+++..+. .++|+|+++.++..+.+++...+++++.++++|+..+.  ++++++|.|++..+ 
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp-  108 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS-  108 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC-
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc-
Confidence            447999999999999999999887 99999999999999999999999999999999998754  67788999886443 


Q ss_pred             eeeeeCCCCCCCCCchhHHH--HHHHHHHHHhcccCCcEEEEEe
Q 025039          136 EVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                              .||...++....  ...+++.++++|||||.|++.+
T Consensus       109 --------~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         109 --------DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             --------CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             --------cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence                    344322211111  2589999999999999999875

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-16  Score=128.80  Aligned_cols=113  Identities=15%  Similarity=0.155  Sum_probs=86.9

Q ss_pred             cccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC--CcCCCCceeEEE
Q 025039           53 QPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--LPFSNDCFDVVI  130 (259)
Q Consensus        53 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~V~  130 (259)
                      .....++.+|||||||+|..+..+++.++.+++++|+|+.+++.|++++...+ ..+.++..++..  ..+++++||.|+
T Consensus        48 ~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~i~  126 (229)
T d1zx0a1          48 AAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGIL  126 (229)
T ss_dssp             HHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             HhhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc-ccccccccccccccccccccccccee
Confidence            33446788999999999999999998876589999999999999999987665 357777777654  245678999998


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ...+....          ...+..+...+++++.++|||||+|++.
T Consensus       127 fD~~~~~~----------~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         127 YDTYPLSE----------ETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             ECCCCCBG----------GGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             eccccccc----------ccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            43221110          0024467889999999999999999874

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=4.1e-16  Score=125.11  Aligned_cols=101  Identities=18%  Similarity=0.149  Sum_probs=86.4

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      .++++.+|||+|||+|..+..+++. +.. +|+++|+++.+++.|+++++..++.++.++++|..+.....++||+|++.
T Consensus        72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~  151 (213)
T d1dl5a1          72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVT  151 (213)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred             hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhh
Confidence            4678999999999999999999886 444 89999999999999999999999888999999988766566789999998


Q ss_pred             ceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          133 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      ++++++                     .+.+.+.|||||++++.
T Consensus       152 ~~~~~~---------------------p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         152 VGVDEV---------------------PETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             SBBSCC---------------------CHHHHHHEEEEEEEEEE
T ss_pred             ccHHHh---------------------HHHHHHhcCCCcEEEEE
Confidence            887654                     12456789999999874

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.1e-16  Score=128.52  Aligned_cols=146  Identities=12%  Similarity=0.120  Sum_probs=100.7

Q ss_pred             CCCCccchhhhcCCCC-ccc----cccc-chHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHH
Q 025039           22 AYLDPHYWDERFSDEE-HYE----WLKD-YSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVE   95 (259)
Q Consensus        22 ~~~~~~~w~~~~~~~~-~~~----w~~~-~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~   95 (259)
                      .|...+||+..|.... ...    |... ...+.+.+.....++.+|||+|||+|......+..+..+|+++|+|+.|++
T Consensus        12 ~f~~~~Y~~~~y~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~   91 (263)
T d2g72a1          12 RFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQ   91 (263)
T ss_dssp             GCCHHHHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHH
T ss_pred             hcCHHHHHHHHhCcCcccchhhhhhhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHH
Confidence            4556789999997532 111    1111 123334444444568899999999998876666555558999999999999


Q ss_pred             HHHHHHhhcCCC-----------------------------C-eEEEEcccCC------CcCCCCceeEEEecceeeeee
Q 025039           96 KMQERLLLKGYK-----------------------------E-VKVLEADMLD------LPFSNDCFDVVIEKATMEVLF  139 (259)
Q Consensus        96 ~a~~~~~~~~~~-----------------------------~-v~~~~~d~~~------~~~~~~~fD~V~~~~~l~~~~  139 (259)
                      .+++++......                             . ..+...|+..      .+...++||+|++..+++++.
T Consensus        92 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~  171 (263)
T d2g72a1          92 ELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS  171 (263)
T ss_dssp             HHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC
T ss_pred             HHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHc
Confidence            999876543210                             0 1223345433      123456899999999998873


Q ss_pred             eCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          140 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                                 .+.++...+++++.++|||||+|++.+.
T Consensus       172 -----------~~~~~~~~~l~~~~~~LkPGG~li~~~~  199 (263)
T d2g72a1         172 -----------PDLASFQRALDHITTLLRPGGHLLLIGA  199 (263)
T ss_dssp             -----------SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             -----------cCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence                       2446789999999999999999998764

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.63  E-value=7.8e-16  Score=123.03  Aligned_cols=120  Identities=17%  Similarity=0.176  Sum_probs=90.2

Q ss_pred             cccccchHHHHhhc----ccCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc
Q 025039           40 EWLKDYSHFRHLVQ----PHIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEA  114 (259)
Q Consensus        40 ~w~~~~~~~~~~l~----~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~  114 (259)
                      .|-...+.+...+.    ..++|+.+|||+|||+|..+.++++..+. +|+|+|+|+.|++.++++++..+  ++.++.+
T Consensus        34 ~w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~  111 (209)
T d1nt2a_          34 EWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--NIIPLLF  111 (209)
T ss_dssp             ECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS--SEEEECS
T ss_pred             eeCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC--CceEEEe
Confidence            35544445554443    34678999999999999999999987654 89999999999999999987654  7899999


Q ss_pred             ccCCCcCCCCc---eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          115 DMLDLPFSNDC---FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       115 d~~~~~~~~~~---fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |..........   +|+|++.  +.               ...+...++.++.++|||||++++...
T Consensus       112 d~~~~~~~~~~~~~vd~v~~~--~~---------------~~~~~~~~l~~~~~~LkpgG~l~i~~~  161 (209)
T d1nt2a_         112 DASKPWKYSGIVEKVDLIYQD--IA---------------QKNQIEILKANAEFFLKEKGEVVIMVK  161 (209)
T ss_dssp             CTTCGGGTTTTCCCEEEEEEC--CC---------------STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eccCccccccccceEEEEEec--cc---------------ChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence            98875533333   4444321  21               224667899999999999999998754

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.63  E-value=1.1e-15  Score=123.89  Aligned_cols=121  Identities=12%  Similarity=0.143  Sum_probs=93.0

Q ss_pred             ccccchHHHHhhcc-----cCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc
Q 025039           41 WLKDYSHFRHLVQP-----HIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEA  114 (259)
Q Consensus        41 w~~~~~~~~~~l~~-----~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~  114 (259)
                      |-...+.+...+..     .++|+.+|||+|||+|..+.++++.++. .|+|+|+|+.|++.+++++...  +++..+.+
T Consensus        52 w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~  129 (230)
T d1g8sa_          52 WNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILG  129 (230)
T ss_dssp             CCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEEC
T ss_pred             ECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEE
Confidence            55555566554432     3568999999999999999999998766 8999999999999999987755  46777788


Q ss_pred             ccCCCc-CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          115 DMLDLP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       115 d~~~~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |..... ..+..+|++++...+++.               .+...++.++.+.|||||.++++..
T Consensus       130 d~~~~~~~~~~~~~v~~i~~~~~~~---------------~~~~~~l~~~~r~LKpgG~~~i~~k  179 (230)
T d1g8sa_         130 DANKPQEYANIVEKVDVIYEDVAQP---------------NQAEILIKNAKWFLKKGGYGMIAIK  179 (230)
T ss_dssp             CTTCGGGGTTTCCCEEEEEECCCST---------------THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeccCcccccccceeEEeeccccch---------------HHHHHHHHHHHHhcccCceEEEEee
Confidence            776643 345567776654444322               5778899999999999999998753

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=5.8e-16  Score=127.51  Aligned_cols=107  Identities=19%  Similarity=0.266  Sum_probs=89.9

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhc---CCCCeEEEEcccCCCcCCCCceeE
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLK---GYKEVKVLEADMLDLPFSNDCFDV  128 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~~~~fD~  128 (259)
                      ..+.|+.+|||+|||+|.++..|++. |+. +|+++|+++++++.|+++++..   ...++.+.++|+.+.++++++||.
T Consensus        92 l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDa  171 (264)
T d1i9ga_          92 GDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDR  171 (264)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEE
T ss_pred             hCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcce
Confidence            34679999999999999999999987 665 9999999999999999988764   235799999999888888899999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      |++.     +               .++..++..+.++|||||.+++..++.
T Consensus       172 V~ld-----l---------------p~P~~~l~~~~~~LkpGG~lv~~~P~i  203 (264)
T d1i9ga_         172 AVLD-----M---------------LAPWEVLDAVSRLLVAGGVLMVYVATV  203 (264)
T ss_dssp             EEEE-----S---------------SCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             EEEe-----c---------------CCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence            9852     1               233478999999999999999877654

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.61  E-value=2.3e-15  Score=124.06  Aligned_cols=106  Identities=24%  Similarity=0.351  Sum_probs=91.9

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEecce
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .+..+|||||||+|..+..++++.+. +++++|+ +.+++.+++++...+..+ +.+..+|+.+ +.+ .++|+|++..+
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~v  156 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSFV  156 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEESC
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhcccc
Confidence            45678999999999999999999877 9999997 889999999988887654 8899999876 333 46999999999


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|++             +.++..++|++++++|||||++++++.
T Consensus       157 Lh~~-------------~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         157 LLNW-------------SDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             GGGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccc-------------CcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            9887             557788999999999999999999875

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.7e-15  Score=122.24  Aligned_cols=108  Identities=19%  Similarity=0.192  Sum_probs=87.4

Q ss_pred             HHhhcccCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcC-----CCCeEEEEcccCCCcC
Q 025039           49 RHLVQPHIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKG-----YKEVKVLEADMLDLPF  121 (259)
Q Consensus        49 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~  121 (259)
                      .+++...++++.+|||+|||+|..+..+++. ++. +|+++|+++++++.|+++++..+     ..++.+..+|......
T Consensus        67 le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~  146 (224)
T d1i1na_          67 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA  146 (224)
T ss_dssp             HHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG
T ss_pred             HHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc
Confidence            3444445688999999999999999988886 444 89999999999999999987654     3468889999988766


Q ss_pred             CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       122 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +.++||+|++.+.++++                     .+.+.+.|||||++++..
T Consensus       147 ~~~~fD~I~~~~~~~~i---------------------p~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         147 EEAPYDAIHVGAAAPVV---------------------PQALIDQLKPGGRLILPV  181 (224)
T ss_dssp             GGCCEEEEEECSBBSSC---------------------CHHHHHTEEEEEEEEEEE
T ss_pred             hhhhhhhhhhhcchhhc---------------------CHHHHhhcCCCcEEEEEE
Confidence            67899999998877554                     234678999999999853

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.60  E-value=4.4e-15  Score=118.02  Aligned_cols=110  Identities=21%  Similarity=0.341  Sum_probs=90.6

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--CCCCceeEEEeccee
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATM  135 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l  135 (259)
                      ...|||||||+|..+..+|+..+. .++|+|+++.++..|.+++...+++++.++.+|+..+.  +++.++|.|++..  
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f--  109 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF--  109 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES--
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc--
Confidence            347999999999999999999887 89999999999999999999999999999999998764  5678899887533  


Q ss_pred             eeeeeCCCCCCCCCchhHH--HHHHHHHHHHhcccCCcEEEEEe
Q 025039          136 EVLFVNSGDPWNPQPETVT--KVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                             .+||.+..+...  -...+|+.+.++|||||.+++.+
T Consensus       110 -------PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         110 -------SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             -------CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             -------cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence                   345654322222  12689999999999999999876

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.60  E-value=1.2e-15  Score=124.78  Aligned_cols=106  Identities=17%  Similarity=0.270  Sum_probs=87.5

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhc-CCCCeEEEEcccCCCcCCCCceeEEE
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLK-GYKEVKVLEADMLDLPFSNDCFDVVI  130 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~V~  130 (259)
                      ..+.||.+|||+|||+|.++..+++. ++. +|+++|+++++++.|+++++.. +..++++..+|+.+. ++++.||.|+
T Consensus        81 l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~  159 (250)
T d1yb2a1          81 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVI  159 (250)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEE
T ss_pred             cCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeee
Confidence            34679999999999999999999986 554 9999999999999999999875 345699999999875 3567899998


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +..         .           ++..+++.+.++|||||++++..++.
T Consensus       160 ld~---------p-----------~p~~~l~~~~~~LKpGG~lv~~~P~i  189 (250)
T d1yb2a1         160 ADI---------P-----------DPWNHVQKIASMMKPGSVATFYLPNF  189 (250)
T ss_dssp             ECC---------S-----------CGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             ecC---------C-----------chHHHHHHHHHhcCCCceEEEEeCCc
Confidence            531         1           22368999999999999999876653

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=1.9e-15  Score=128.62  Aligned_cols=138  Identities=17%  Similarity=0.194  Sum_probs=108.0

Q ss_pred             ccccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccC
Q 025039           39 YEWLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADML  117 (259)
Q Consensus        39 ~~w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~  117 (259)
                      ..++...+.....+...++++.+|||+|||+|..++.++..|..+|+++|+|+.+++.+++++..+++. +++++++|+.
T Consensus       126 tG~flDqr~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~  205 (324)
T d2as0a2         126 TGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF  205 (324)
T ss_dssp             SCCCSTTHHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred             cCcccchhhHHHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhh
Confidence            446666677777888888889999999999999999999988769999999999999999999999985 4899999987


Q ss_pred             CC----cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          118 DL----PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       118 ~~----~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      +.    +....+||+|++.++.......      ..........+++..+.++|+|||.|++++++...
T Consensus       206 ~~~~~~~~~~~~fD~Vi~DpP~~~~~~~------~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~  268 (324)
T d2as0a2         206 EEMEKLQKKGEKFDIVVLDPPAFVQHEK------DLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHV  268 (324)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCCSCSSGG------GHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTS
T ss_pred             hhhHHHHhccCCCCchhcCCccccCCHH------HHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence            52    2345789999987654221000      00012345677899999999999999999887643

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=2e-15  Score=128.82  Aligned_cols=105  Identities=22%  Similarity=0.344  Sum_probs=89.6

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .++++|||+|||+|.++..+++.|..+|+++|.++ +++.|+++.+.++... +.++++++.++++++++||+|++....
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence            36889999999999999999999987999999986 6788888888887654 899999999998888899999997766


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                      +.+.            .......++....++|||||.++
T Consensus       116 ~~~~------------~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         116 YFLL------------YESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTBS------------TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeec------------cchhHHHHHHHHHhccCCCeEEE
Confidence            5552            33456788888999999999996

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=3.3e-15  Score=126.78  Aligned_cols=105  Identities=18%  Similarity=0.285  Sum_probs=88.3

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .++++|||+|||+|.+++.+++.|..+|+++|.++. ...+++..+.+++.+ +.++++|+.+++.+.++||+|++....
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence            368899999999999999999998778999999975 567777777777755 999999999988888899999987666


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                      +.+.            +......++..+.++|+|||.++
T Consensus       111 ~~l~------------~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         111 YCLF------------YESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             BTBT------------BTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeec------------cHHHHHHHHHHHHhcCCCCeEEE
Confidence            5542            23456789999999999999997

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.56  E-value=3.5e-14  Score=107.72  Aligned_cols=113  Identities=15%  Similarity=0.267  Sum_probs=90.6

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-cCCCCc
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-PFSNDC  125 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~~~~~~  125 (259)
                      +...+...+ ++.+|||+|||+|.+++.++.+|..+|+++|.++.+++.+++++...+..+ ++++++|+.+. ....++
T Consensus         5 ~fn~l~~~~-~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~   83 (152)
T d2esra1           5 IFNMIGPYF-NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGR   83 (152)
T ss_dssp             HHHHHCSCC-CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSC
T ss_pred             HHHHHHhhC-CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccc
Confidence            344455444 588999999999999999999998899999999999999999999988866 99999998763 344678


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHH--hcccCCcEEEEEe
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVH--RVLKPDGLFISVS  177 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~  177 (259)
                      ||+|++.+++.                .......++.+.  ++|+|+|.+++..
T Consensus        84 fDiIf~DPPy~----------------~~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          84 FDLVFLDPPYA----------------KETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             EEEEEECCSSH----------------HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cceeEechhhc----------------cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence            99999877652                244555666554  5799999998754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.2e-15  Score=124.36  Aligned_cols=106  Identities=18%  Similarity=0.269  Sum_probs=85.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      ..++++|||+|||+|.+++.+++.|..+|+++|.|+.+.. +++....++. +++.++++|+.+++.+..+||+|++...
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~  111 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  111 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence            3468899999999999999999999879999999998765 4444455554 4599999999998888889999999766


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEE
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  174 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  174 (259)
                      .+.+.            .......++....++|+|||+++
T Consensus       112 ~~~~~------------~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         112 GYFLL------------FESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             BTTBT------------TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             eeecc------------cccccHHHHHHHHhcCCCCcEEe
Confidence            55441            22456778888889999999998

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2e-14  Score=119.71  Aligned_cols=109  Identities=14%  Similarity=0.195  Sum_probs=82.7

Q ss_pred             CCCcEEEEcCCCCcchHHHHhc------CCC-eEEEeeCCHHHHHHHHHHHhhcC-CCCeEE--EEcccCC------CcC
Q 025039           58 PNSSVLELGCGNSRLSEGLYND------GIT-AITCIDLSAVAVEKMQERLLLKG-YKEVKV--LEADMLD------LPF  121 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~------~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~--~~~d~~~------~~~  121 (259)
                      +..+|||+|||+|..+..+++.      +.. .++|+|+|+.|++.+++++.... +.++.+  ...++..      .+.
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK  119 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence            3457999999999988877653      222 68999999999999999876542 233443  3333321      234


Q ss_pred             CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       122 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      ++++||+|++..+++++               +++..+++++.++|+|||.+++..++..
T Consensus       120 ~~~~fD~I~~~~~l~~~---------------~d~~~~l~~l~~~LkpgG~l~i~~~~~~  164 (280)
T d1jqea_         120 ELQKWDFIHMIQMLYYV---------------KDIPATLKFFHSLLGTNAKMLIIVVSGS  164 (280)
T ss_dssp             SCCCEEEEEEESCGGGC---------------SCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred             CCCceeEEEEccceecC---------------CCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence            56899999999999877               4677999999999999999999877654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.53  E-value=3.5e-14  Score=114.19  Aligned_cols=98  Identities=18%  Similarity=0.146  Sum_probs=81.9

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .++++.+|||+|||+|..+..+++.+. +|+++|+++.+++.|++++...  .++.++.+|......+.++||+|++.+.
T Consensus        67 ~l~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~~~--~nv~~~~~d~~~g~~~~~pfD~Iiv~~a  143 (224)
T d1vbfa_          67 DLHKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYY--NNIKLILGDGTLGYEEEKPYDRVVVWAT  143 (224)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTC--SSEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred             hhcccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHhcc--cccccccCchhhcchhhhhHHHHHhhcc
Confidence            467899999999999999999999876 9999999999999999987643  5899999998764445678999998877


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      +.++                     .+.+.+.|+|||+|++.
T Consensus       144 ~~~i---------------------p~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         144 APTL---------------------LCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             BSSC---------------------CHHHHHTEEEEEEEEEE
T ss_pred             hhhh---------------------hHHHHHhcCCCCEEEEE
Confidence            6544                     23456789999999974

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=2.2e-14  Score=118.15  Aligned_cols=110  Identities=15%  Similarity=0.179  Sum_probs=91.3

Q ss_pred             HHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCcCCCCcee
Q 025039           49 RHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFD  127 (259)
Q Consensus        49 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD  127 (259)
                      ...+...+.++.+|||+|||+|.+++.+++.|..+|+++|+++.+++.++++++.+++.+ ++++++|+.++.. .+.||
T Consensus        98 r~ri~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D  176 (260)
T d2frna1          98 RVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIAD  176 (260)
T ss_dssp             HHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEE
T ss_pred             HHHHHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCC
Confidence            334455677899999999999999999999876699999999999999999999999876 9999999988763 46899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .|+++.+-.                   ...++..+.++|+|||++.+..+
T Consensus       177 ~Ii~~~p~~-------------------~~~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         177 RILMGYVVR-------------------THEFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             EEEECCCSS-------------------GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEECCCCc-------------------hHHHHHHHHhhcCCCCEEEEEec
Confidence            998754321                   13577888999999999977654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=1.1e-14  Score=123.38  Aligned_cols=118  Identities=19%  Similarity=0.182  Sum_probs=93.3

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC----cCCCCceeEEEecc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~~~  133 (259)
                      ++.+|||+|||+|..+++++..+. +|+++|+|+.+++.++++++.+++++++++++|+.+.    ....++||+|++..
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g~~-~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp  223 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALGFR-EVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP  223 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEE-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeeeccCCCCcHHHHHHHhcCC-cEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence            588999999999999999886544 9999999999999999999999998899999998763    33457899999876


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      +......  .    ..........+++..+.++|+|||.|++++++...
T Consensus       224 P~~~~~~--~----~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~  266 (318)
T d1wxxa2         224 PAFAKGK--K----DVERAYRAYKEVNLRAIKLLKEGGILATASCSHHM  266 (318)
T ss_dssp             CCSCCST--T----SHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             Cccccch--H----HHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccc
Confidence            5321100  0    00122345678999999999999999999887643

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.52  E-value=1.5e-14  Score=119.53  Aligned_cols=105  Identities=15%  Similarity=0.236  Sum_probs=85.8

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCcCCCCceeEEEe
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIE  131 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~  131 (259)
                      .+.++.+|||+|||+|.++..+++. ++. +|+++|+++++++.|+++++..++. ++.+...|+.. .+....||.|+.
T Consensus       100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~~~~~~D~V~~  178 (266)
T d1o54a_         100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GFDEKDVDALFL  178 (266)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CCSCCSEEEEEE
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-cccccceeeeEe
Confidence            4679999999999999999999987 444 9999999999999999999998874 47888888654 344567998874


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .     +               .++.++++++.++|||||++++..++.
T Consensus       179 d-----~---------------p~p~~~l~~~~~~LKpGG~lv~~~P~~  207 (266)
T d1o54a_         179 D-----V---------------PDPWNYIDKCWEALKGGGRFATVCPTT  207 (266)
T ss_dssp             C-----C---------------SCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred             c-----C---------------CCHHHHHHHHHhhcCCCCEEEEEeCcc
Confidence            2     1               233478999999999999999877654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=7.6e-14  Score=112.48  Aligned_cols=119  Identities=18%  Similarity=0.211  Sum_probs=90.0

Q ss_pred             ccccchHHHHhhcc-----cCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE
Q 025039           41 WLKDYSHFRHLVQP-----HIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLE  113 (259)
Q Consensus        41 w~~~~~~~~~~l~~-----~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~  113 (259)
                      |-...+.+...+..     .++||.+|||+|||+|..+.++++. |+. +|+++|+++.+++.++++++..+  ++..+.
T Consensus        51 w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~  128 (227)
T d1g8aa_          51 WNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR--NIVPIL  128 (227)
T ss_dssp             CCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT--TEEEEE
T ss_pred             ECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC--CceEEE
Confidence            55444555544432     3568999999999999999999987 555 99999999999999999887653  677777


Q ss_pred             cccCCC---cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          114 ADMLDL---PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       114 ~d~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .|....   +.....+|+|++...                 ...+...++.++.+.|||||.++++..
T Consensus       129 ~d~~~~~~~~~~~~~vD~i~~d~~-----------------~~~~~~~~l~~~~~~LkpgG~lvi~~k  179 (227)
T d1g8aa_         129 GDATKPEEYRALVPKVDVIFEDVA-----------------QPTQAKILIDNAEVYLKRGGYGMIAVK  179 (227)
T ss_dssp             CCTTCGGGGTTTCCCEEEEEECCC-----------------STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCCcccccccccceEEEEEEcc-----------------ccchHHHHHHHHHHhcccCCeEEEEEE
Confidence            777553   233467888875321                 224667899999999999999998754

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.50  E-value=5.4e-14  Score=118.92  Aligned_cols=136  Identities=15%  Similarity=0.132  Sum_probs=103.0

Q ss_pred             ccccchHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEcccCC
Q 025039           41 WLKDYSHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLD  118 (259)
Q Consensus        41 w~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~  118 (259)
                      ++...+.....+...+.++.+|||++||+|.++++++..|..+|+++|+|+.+++.++++++.++++  +++++++|+.+
T Consensus       127 lflDqR~~r~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~  206 (317)
T d2b78a2         127 IFLDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD  206 (317)
T ss_dssp             SCGGGHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH
T ss_pred             CcHHHHHHHHHHHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHH
Confidence            4444444445445556789999999999999999988888778999999999999999999998874  58999999876


Q ss_pred             C----cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          119 L----PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       119 ~----~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      .    .....+||+|++.++-..-  .....    .....+..+++..+.++|+|||.|+++++++..
T Consensus       207 ~l~~~~~~~~~fD~Ii~DPP~f~~--~~~~~----~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~  268 (317)
T d2b78a2         207 YFKYARRHHLTYDIIIIDPPSFAR--NKKEV----FSVSKDYHKLIRQGLEILSENGLIIASTNAANM  268 (317)
T ss_dssp             HHHHHHHTTCCEEEEEECCCCC-------CC----CCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             HHHHHHhhcCCCCEEEEcChhhcc--chhHH----HHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC
Confidence            3    2245689999987653111  00111    124467788999999999999999998887543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.50  E-value=8.7e-14  Score=111.12  Aligned_cols=101  Identities=25%  Similarity=0.216  Sum_probs=85.8

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      .++++.+|||+|||+|+.+..++.....+|+++|.++.+++.+++++...++.++.++++|........+.||.|++.+.
T Consensus        75 ~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a  154 (215)
T d1jg1a_          75 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAG  154 (215)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             ccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecc
Confidence            46789999999999999999998773237999999999999999999999999999999999885556788999999877


Q ss_pred             eeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          135 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      +..+                     -..+.+.|+|||++++.
T Consensus       155 ~~~i---------------------p~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         155 APKI---------------------PEPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             BSSC---------------------CHHHHHTEEEEEEEEEE
T ss_pred             cccC---------------------CHHHHHhcCCCCEEEEE
Confidence            7544                     12356679999999975

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.6e-14  Score=120.08  Aligned_cols=106  Identities=19%  Similarity=0.208  Sum_probs=82.3

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcC-----------CCCeEEEEcccCCCc-
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKG-----------YKEVKVLEADMLDLP-  120 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~-----------~~~v~~~~~d~~~~~-  120 (259)
                      .+.||.+|||+|||+|.++..|++. |+. +|+++|+++++++.|+++++..+           ..++.+.++|+.+.. 
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~  174 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  174 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence            4679999999999999999999986 555 89999999999999999987532           246899999987643 


Q ss_pred             -CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          121 -FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       121 -~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                       .+...||.|+.         +...||           .++.++.++|||||++++..++.
T Consensus       175 ~~~~~~fD~V~L---------D~p~P~-----------~~l~~~~~~LKpGG~lv~~~P~i  215 (324)
T d2b25a1         175 DIKSLTFDAVAL---------DMLNPH-----------VTLPVFYPHLKHGGVCAVYVVNI  215 (324)
T ss_dssp             ------EEEEEE---------CSSSTT-----------TTHHHHGGGEEEEEEEEEEESSH
T ss_pred             ccCCCCcceEee---------cCcCHH-----------HHHHHHHHhccCCCEEEEEeCCH
Confidence             34567998874         223344           57999999999999999876653

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6e-14  Score=119.42  Aligned_cols=107  Identities=11%  Similarity=0.082  Sum_probs=84.3

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhc---------CCCCeEEEEcccCCCcCCCC
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLK---------GYKEVKVLEADMLDLPFSND  124 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~---------~~~~v~~~~~d~~~~~~~~~  124 (259)
                      .+.++.+|||+|||+|..+..++..... +++|+|+++.+++.|+++.+..         ...+++++++|+.+.++.+.
T Consensus       148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~  227 (328)
T d1nw3a_         148 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER  227 (328)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccc
Confidence            3678899999999999999998876444 8999999999999998765432         22469999999988775544


Q ss_pred             c--eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          125 C--FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       125 ~--fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .  +|+|+++... +               ..+....|.++.+.|||||++++..
T Consensus       228 ~~~advi~~~~~~-f---------------~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         228 IANTSVIFVNNFA-F---------------GPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             HHHCSEEEECCTT-T---------------CHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cCcceEEEEccee-c---------------chHHHHHHHHHHHhCCCCcEEEEec
Confidence            3  4777765432 2               2577889999999999999998754

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.44  E-value=1e-13  Score=107.16  Aligned_cols=114  Identities=11%  Similarity=0.149  Sum_probs=83.7

Q ss_pred             HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC----CcCC
Q 025039           47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----LPFS  122 (259)
Q Consensus        47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~  122 (259)
                      .+..++...+.++.+|||+|||+|.+++.++.+|. +++++|.++.+++.++++++..++.. ++...+...    ....
T Consensus        30 ~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~~~~~~  107 (171)
T d1ws6a1          30 ALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEAKAQ  107 (171)
T ss_dssp             HHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHHHHT
T ss_pred             HHHHHhhccccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhccccccccc
Confidence            34455666677899999999999999999999998 89999999999999999999988744 444444322    1234


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ..+||+|++.++++.-             .......+++  ..+|+|||++++..
T Consensus       108 ~~~fD~If~DPPY~~~-------------~~~~l~~l~~--~~ll~~~g~ivie~  147 (171)
T d1ws6a1         108 GERFTVAFMAPPYAMD-------------LAALFGELLA--SGLVEAGGLYVLQH  147 (171)
T ss_dssp             TCCEEEEEECCCTTSC-------------TTHHHHHHHH--HTCEEEEEEEEEEE
T ss_pred             CCccceeEEccccccC-------------HHHHHHHHHH--cCCcCCCeEEEEEe
Confidence            5689999998876421             1123333333  35899999988754

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.42  E-value=2.8e-13  Score=108.85  Aligned_cols=102  Identities=22%  Similarity=0.285  Sum_probs=81.8

Q ss_pred             ccCCCCCcEEEEcCCCCcchHHHHhc----CC---CeEEEeeCCHHHHHHHHHHHhhc-----CCCCeEEEEcccCCCcC
Q 025039           54 PHIKPNSSVLELGCGNSRLSEGLYND----GI---TAITCIDLSAVAVEKMQERLLLK-----GYKEVKVLEADMLDLPF  121 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~G~~~~~l~~~----~~---~~v~~vD~s~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~~~~  121 (259)
                      ..++++.+|||+|||+|+.+..+++.    |.   .+|+++|+++++++.+++++...     ++.++.+.++|..+...
T Consensus        76 ~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~  155 (223)
T d1r18a_          76 DHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP  155 (223)
T ss_dssp             TTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG
T ss_pred             hccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc
Confidence            35778999999999999999888775    21   27999999999999999876443     34579999999987655


Q ss_pred             CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       122 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      +.+.||.|++.+.++.+                     -+.+.+.|+|||++++.
T Consensus       156 ~~~~fD~Iiv~~a~~~~---------------------p~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         156 PNAPYNAIHVGAAAPDT---------------------PTELINQLASGGRLIVP  189 (223)
T ss_dssp             GGCSEEEEEECSCBSSC---------------------CHHHHHTEEEEEEEEEE
T ss_pred             cccceeeEEEEeechhc---------------------hHHHHHhcCCCcEEEEE
Confidence            66789999998877544                     12467899999999875

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=8.6e-13  Score=102.91  Aligned_cols=112  Identities=12%  Similarity=0.148  Sum_probs=88.2

Q ss_pred             HHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-cCCCCcee
Q 025039           49 RHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-PFSNDCFD  127 (259)
Q Consensus        49 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD  127 (259)
                      ...+...+ .+.+|||++||+|.+++.++.+|..+|+++|.++.+++.++++++..+..++.++..|+.+. ......||
T Consensus        35 fn~l~~~~-~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fD  113 (183)
T d2fpoa1          35 FNWLAPVI-VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHN  113 (183)
T ss_dssp             HHHHHHHH-TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEE
T ss_pred             Hhhhhccc-chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccC
Confidence            33444333 57899999999999999999999989999999999999999999988887899999988763 33457899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHH--hcccCCcEEEEEe
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVH--RVLKPDGLFISVS  177 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~  177 (259)
                      +|++.+++..                .....++..+.  .+|+++|++++..
T Consensus       114 lIf~DPPY~~----------------~~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         114 IVFVDPPFRR----------------GLLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             EEEECCSSST----------------TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             EEEEcCcccc----------------chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            9999877632                23345555554  4799999998854

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.35  E-value=3.1e-12  Score=106.91  Aligned_cols=120  Identities=18%  Similarity=0.210  Sum_probs=90.5

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCCCc----CCCCceeEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLP----FSNDCFDVV  129 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~----~~~~~fD~V  129 (259)
                      ..++.+|||++||+|.+++.++..|. +|++||.|+.+++.|++++..+++..  ++++++|+.+.-    .....||+|
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I  208 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  208 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence            34678999999999999999999888 89999999999999999999888753  899999987631    234689999


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      ++.++-... ...+..|    .-......++..+.++|+|||.+++++.+..
T Consensus       209 ilDPP~f~~-~~~~~~~----~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~  255 (309)
T d2igta1         209 LTDPPKFGR-GTHGEVW----QLFDHLPLMLDICREILSPKALGLVLTAYSI  255 (309)
T ss_dssp             EECCCSEEE-CTTCCEE----EHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred             EECCCcccc-cccchhH----HHHHHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence            987663211 0011111    1234456788889999999998777665443

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.35  E-value=1.4e-12  Score=102.36  Aligned_cols=72  Identities=25%  Similarity=0.367  Sum_probs=62.8

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      .|++|||+|||+|.+++.++..|..+|+++|+++.+++.|++++.     ++.+.++|+.+++   +.||+|++++++..
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~-----~~~~~~~D~~~l~---~~fD~Vi~NPPfg~  119 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS---GKYDTWIMNPPFGS  119 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC---CCEEEEEECCCC--
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc-----cccEEEEehhhcC---CcceEEEeCcccch
Confidence            588999999999999999999988789999999999999999863     6889999997754   67999999988743

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.35  E-value=6.1e-12  Score=97.86  Aligned_cols=113  Identities=16%  Similarity=0.255  Sum_probs=88.3

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCC----cCC
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL----PFS  122 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~----~~~  122 (259)
                      +...+... .++.+|||++||+|.+++.++.+|..+|+++|.++.+++.+++++...+.. ++.++++|+.+.    ...
T Consensus        32 lFn~l~~~-~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~  110 (182)
T d2fhpa1          32 IFNMIGPY-FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE  110 (182)
T ss_dssp             HHHHHCSC-CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHHh-cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhccc
Confidence            33444433 368899999999999999999999889999999999999999999888776 489999998652    123


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHH--hcccCCcEEEEEe
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVH--RVLKPDGLFISVS  177 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~  177 (259)
                      ..+||+|++.+++..                ......+..+.  .+|+++|++++..
T Consensus       111 ~~~fDlIflDPPY~~----------------~~~~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1         111 KLQFDLVLLDPPYAK----------------QEIVSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             TCCEEEEEECCCGGG----------------CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             CCCcceEEechhhhh----------------hHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence            458999999887632                23455666664  4799999887643

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.34  E-value=2.5e-12  Score=101.66  Aligned_cols=76  Identities=25%  Similarity=0.337  Sum_probs=66.9

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      +|.+|||+|||+|.+++.++..|..+|+|+|+++.+++.+++++...+. ...+..+|...+.   +.||+|++++++..
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~~---~~fD~Vi~nPP~~~  121 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN---SRVDIVIMNPPFGS  121 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC---CCCSEEEECCCCSS
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhhC---CcCcEEEEcCcccc
Confidence            6789999999999999999988877999999999999999999988875 6788888887753   57999999988743

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.34  E-value=3e-12  Score=105.37  Aligned_cols=131  Identities=11%  Similarity=0.099  Sum_probs=90.5

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCc-CCCCceeEEEeccee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP-FSNDCFDVVIEKATM  135 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~~~~fD~V~~~~~l  135 (259)
                      +..+|+|+|||+|..+..+++....+|+++|+|+.+++.|++|++.+++.+ +.+..+|+.+.. ...+.||+|++++++
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPY  189 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY  189 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred             cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccc
Confidence            346899999999999999887643399999999999999999999998865 677788887632 234689999999886


Q ss_pred             eeee--eCCCCCCCC------CchhHHHHHHHHHHHHhcccCCcEEEEE-ecCCccccccccCCC
Q 025039          136 EVLF--VNSGDPWNP------QPETVTKVMAMLEGVHRVLKPDGLFISV-SFGQPHFRRPFFNAP  191 (259)
Q Consensus       136 ~~~~--~~~~~~~~~------~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~  191 (259)
                      ----  .+....|+|      +.++.....+++   .++|+|||.+++. .+.+......++...
T Consensus       190 I~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~---~~~L~~~G~l~~Eig~~Q~~~v~~l~~~~  251 (271)
T d1nv8a_         190 VKSSAHLPKDVLFEPPEALFGGEDGLDFYREFF---GRYDTSGKIVLMEIGEDQVEELKKIVSDT  251 (271)
T ss_dssp             BCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHH---HHCCCTTCEEEEECCTTCHHHHTTTSTTC
T ss_pred             cCcccccceeeeeccccccccccchHHHHHHHH---HHhcCCCCEEEEEECHHHHHHHHHHHHhC
Confidence            2110  001111333      233344455554   5789999988874 344544444555543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=7.2e-12  Score=108.53  Aligned_cols=114  Identities=14%  Similarity=0.118  Sum_probs=80.5

Q ss_pred             HHHhhcc-cCCCCCcEEEEcCCCCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcC---------CCCeEE-EEcc
Q 025039           48 FRHLVQP-HIKPNSSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKG---------YKEVKV-LEAD  115 (259)
Q Consensus        48 ~~~~l~~-~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~---------~~~v~~-~~~d  115 (259)
                      +.+++.. .+.++.+|||+|||+|..+..++.. +..+++|+|+++.+++.|+++.+..+         ...+.+ ..++
T Consensus       205 i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~  284 (406)
T d1u2za_         205 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS  284 (406)
T ss_dssp             HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred             HHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeec
Confidence            4444442 4678999999999999999999877 43489999999999999998875431         112333 2344


Q ss_pred             cCCCcC---CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          116 MLDLPF---SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       116 ~~~~~~---~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ....+.   .-..+|+|+++... +               .+++...|.++.+.|||||+++...
T Consensus       285 f~~~~~~d~~~~~adVV~inn~~-f---------------~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         285 FVDNNRVAELIPQCDVILVNNFL-F---------------DEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             STTCHHHHHHGGGCSEEEECCTT-C---------------CHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             hhhccccccccccceEEEEeccc-C---------------chHHHHHHHHHHHhcCCCcEEEEec
Confidence            433221   11357888875422 1               2678899999999999999998753

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=1.7e-11  Score=95.86  Aligned_cols=119  Identities=13%  Similarity=0.219  Sum_probs=90.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----CCCCceeEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVV  129 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~V  129 (259)
                      ..++..+||++||+|..+..+++..+. +|+|+|.++.|++.+++++...+ .++.++++++.++.     +..++||.|
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~~~~~~~~~~~~vdgI   99 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLGIEKVDGI   99 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhHHHHHHHcCCCCccee
Confidence            357889999999999999999998655 99999999999999999988765 46899998886642     345789998


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCc
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  181 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  181 (259)
                      +....+...-.+      ...+......+.|..+.++|+|||.++++++...
T Consensus       100 l~DlGvSs~Qld------~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~  145 (192)
T d1m6ya2         100 LMDLGVSTYQLK------GENRELENLKEFLKKAEDLLNPGGRIVVISFHSL  145 (192)
T ss_dssp             EEECSCCHHHHH------TSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHH
T ss_pred             eeccchhHhhhh------hhhccchhHHHHHHHHHHhcCCCCeeeeeccccH
Confidence            754221100000      0012456678899999999999999999988653

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.20  E-value=4.8e-11  Score=93.55  Aligned_cols=106  Identities=17%  Similarity=0.198  Sum_probs=74.8

Q ss_pred             CCCCcEEEEcCCCCcc----hHHHHhc----CCC-eEEEeeCCHHHHHHHHHHH------------------hhcCC---
Q 025039           57 KPNSSVLELGCGNSRL----SEGLYND----GIT-AITCIDLSAVAVEKMQERL------------------LLKGY---  106 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~----~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~------------------~~~~~---  106 (259)
                      .+..+|+++|||+|..    ++.+.+.    +.. +++|+|+++.+++.|++..                  ...+.   
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            3457999999999984    4444432    223 7999999999999998522                  00000   


Q ss_pred             ----------CCeEEEEcccCCCc-CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          107 ----------KEVKVLEADMLDLP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       107 ----------~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                                ..+.+...+..... ...+.||+|+|.+++.++             +.+...++++++++.|+|||+|++
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf-------------~~~~~~~vl~~l~~~L~pGG~L~l  169 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-------------DKTTQEDILRRFVPLLKPDGLLFA  169 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-------------CHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc-------------CHHHHHHHHHHHHHHhCCCcEEEE
Confidence                      11233444443322 234689999999999887             667888999999999999998875

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=3.1e-11  Score=96.14  Aligned_cols=103  Identities=18%  Similarity=0.183  Sum_probs=80.3

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-c-----CCCCceeE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-P-----FSNDCFDV  128 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~-----~~~~~fD~  128 (259)
                      ++.+|||+|||+|..++++++... . +++++|+++.+++.|+++++..|+.+ ++++.+|..+. +     ...+.||+
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~  135 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  135 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence            567999999999999999998632 2 99999999999999999999988865 99999998662 2     23467999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      |+..+.-                ........+.+..++|+|||++++-
T Consensus       136 ifiD~~~----------------~~~~~~~~l~~~~~lLkpGGvIv~D  167 (214)
T d2cl5a1         136 VFLDHWK----------------DRYLPDTLLLEKCGLLRKGTVLLAD  167 (214)
T ss_dssp             EEECSCG----------------GGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred             eeecccc----------------cccccHHHHHHHhCccCCCcEEEEe
Confidence            9964321                1122334577788999999988763

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.20  E-value=1.3e-11  Score=100.35  Aligned_cols=99  Identities=23%  Similarity=0.302  Sum_probs=81.2

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      ....+|||+|||+|..+..++++.+. +++.+|+ +..++.+.      ..++++++.+|+.+ +.+  ..|++++..++
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~------~~~ri~~~~gd~~~-~~p--~~D~~~l~~vL  149 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP------PLSGIEHVGGDMFA-SVP--QGDAMILKAVC  149 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------CCTTEEEEECCTTT-CCC--CEEEEEEESSG
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccC------CCCCeEEecCCccc-ccc--cceEEEEehhh
Confidence            44589999999999999999999888 9999997 44443221      22569999999976 333  45999999999


Q ss_pred             eeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          136 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |.+             +.++..++|++++++|+|||.+++++.
T Consensus       150 h~~-------------~de~~~~iL~~~~~aL~pgg~llI~e~  179 (244)
T d1fp1d2         150 HNW-------------SDEKCIEFLSNCHKALSPNGKVIIVEF  179 (244)
T ss_dssp             GGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhC-------------CHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            887             667889999999999999999999875

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.18  E-value=2.7e-10  Score=88.40  Aligned_cols=114  Identities=18%  Similarity=0.241  Sum_probs=85.8

Q ss_pred             HHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCC--eEEEEcccCC---CcCC
Q 025039           48 FRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLD---LPFS  122 (259)
Q Consensus        48 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~---~~~~  122 (259)
                      +...+...+ .+.+|||+.||+|.++++++.+|..+|+.||.+..+++.++++++..+..+  ..+...|..+   ....
T Consensus        34 lFn~l~~~~-~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~  112 (183)
T d2ifta1          34 LFNWLMPYI-HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQN  112 (183)
T ss_dssp             HHHHHHHHH-TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCS
T ss_pred             HHHHhhhhc-ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccccccccccccc
Confidence            334444333 577999999999999999999999899999999999999999998887644  5556665443   2233


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHH--hcccCCcEEEEEec
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVH--RVLKPDGLFISVSF  178 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~  178 (259)
                      ...||+|++.++++.                .....+++.+.  .+|+++|.+++...
T Consensus       113 ~~~fDlIFlDPPY~~----------------~~~~~~l~~l~~~~~L~~~~liiiE~~  154 (183)
T d2ifta1         113 QPHFDVVFLDPPFHF----------------NLAEQAISLLCENNWLKPNALIYVETE  154 (183)
T ss_dssp             SCCEEEEEECCCSSS----------------CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             CCcccEEEechhHhh----------------hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence            457999999888743                23455666665  47999999888543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.4e-10  Score=94.53  Aligned_cols=119  Identities=10%  Similarity=0.060  Sum_probs=83.0

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCCc------CCCCceeEE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP------FSNDCFDVV  129 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~------~~~~~fD~V  129 (259)
                      +..++||+|||+|..+..++...++ +++|+|+++++++.|+++++.+++.+ +.+...+.....      ...++||+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            3468999999999999999887555 99999999999999999999998866 777765543311      234679999


Q ss_pred             EecceeeeeeeCCCC-------CCCC------Cc-------hhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          130 IEKATMEVLFVNSGD-------PWNP------QP-------ETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~-------~~~~------~~-------~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      +|++++.........       ...|      ..       ....-..+++++....++..|.+...
T Consensus       141 vsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~  207 (250)
T d2h00a1         141 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCM  207 (250)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEE
T ss_pred             EecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEE
Confidence            999998642111000       0000      00       00123677888888999999988653

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.3e-11  Score=95.00  Aligned_cols=103  Identities=16%  Similarity=0.127  Sum_probs=84.3

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-c-----CCCCcee
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-P-----FSNDCFD  127 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~-----~~~~~fD  127 (259)
                      ..+++|||+|||+|..+.++++.-+ + +++.+|.+++..+.|++++...++.+ ++++.+|+.+. +     ...++||
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD  137 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  137 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence            3578999999999999999998743 2 99999999999999999999988866 99999987652 1     2356899


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +|+...                  ........++.+.++|+|||++++-.
T Consensus       138 ~ifiD~------------------dk~~y~~~~~~~~~lL~~GGvii~Dn  169 (219)
T d2avda1         138 VAVVDA------------------DKENCSAYYERCLQLLRPGGILAVLR  169 (219)
T ss_dssp             EEEECS------------------CSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEEeC------------------CHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence            999532                  12455678889999999999999854

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.07  E-value=1.4e-10  Score=94.13  Aligned_cols=98  Identities=16%  Similarity=0.237  Sum_probs=80.1

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ...+|||+|||+|..+..++++.+. ++++.|+ +..++.+.      .-++++++.+|+.+. .+  .+|++++..++|
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~------~~~rv~~~~gD~f~~-~p--~aD~~~l~~vLH  149 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS------GSNNLTYVGGDMFTS-IP--NADAVLLKYILH  149 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------CBTTEEEEECCTTTC-CC--CCSEEEEESCGG
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc------ccCceEEEecCcccC-CC--CCcEEEEEeecc
Confidence            4478999999999999999999887 9999998 55544332      124699999999873 23  579999999998


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC---cEEEEEec
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD---GLFISVSF  178 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~  178 (259)
                      .+             +.++..++|++++++|+||   |++++++.
T Consensus       150 dw-------------~d~~~~~iL~~~~~al~pgg~~~~lli~e~  181 (244)
T d1fp2a2         150 NW-------------TDKDCLRILKKCKEAVTNDGKRGKVTIIDM  181 (244)
T ss_dssp             GS-------------CHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             cC-------------ChHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence            87             6688899999999999998   77888754

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.04  E-value=6.9e-10  Score=93.15  Aligned_cols=126  Identities=20%  Similarity=0.241  Sum_probs=91.7

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  132 (259)
                      ...++.+|||++||+|.-+.+++....+  .++++|.++..+..+++++...++.++.+...|...++.....||.|++.
T Consensus       113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvD  192 (313)
T d1ixka_         113 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD  192 (313)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEc
Confidence            3568899999999999999988876432  79999999999999999999999988888888877666556789999853


Q ss_pred             ce---eeeeeeCCCCCCCCCchhHH----HHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 AT---MEVLFVNSGDPWNPQPETVT----KVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~---l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .+   ...+...+...|.-.++...    ...++|..+.+.|||||.++.++++-
T Consensus       193 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         193 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence            21   11112222333443333332    34578999999999999999998874

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.01  E-value=2.1e-10  Score=91.89  Aligned_cols=101  Identities=12%  Similarity=0.070  Sum_probs=83.4

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCC-C-eEEEeeCCHHHHHHHHHHHhhcCCCC-eEEEEcccCCC-c------CCCCcee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL-P------FSNDCFD  127 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~------~~~~~fD  127 (259)
                      .+.+|||+|+++|..+.++++..+ + +++.+|.+++..+.|+++++..|+.+ ++++.+++.+. +      ...++||
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD  138 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  138 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence            578999999999999999997643 2 99999999999999999999999866 99999988652 2      1245799


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      +|+..+    -              .......++.+.++|+|||++++-
T Consensus       139 ~iFiDa----~--------------k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         139 FIFVDA----D--------------KDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             EEEECS----C--------------STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEEecc----c--------------hhhhHHHHHHHHhhcCCCcEEEEc
Confidence            999532    1              245678889999999999999985

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.4e-09  Score=90.02  Aligned_cols=126  Identities=12%  Similarity=0.174  Sum_probs=89.5

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-CCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~  132 (259)
                      ...++.+|||+|+|+|.-+.++++.+.+ .++++|+++..++.++++++..|++++.+...|..... ...+.||.|++.
T Consensus        99 ~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~D  178 (284)
T d1sqga2          99 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD  178 (284)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred             CccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEe
Confidence            3567899999999999999999988665 89999999999999999999999876665555443322 234679999953


Q ss_pred             ce---eeeeeeCCCCCCCCCchh----HHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 AT---MEVLFVNSGDPWNPQPET----VTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~---l~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .+   ...+-.++...|.-.+..    ..-..++|..+.+.|||||+++.++++-
T Consensus       179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~  233 (284)
T d1sqga2         179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  233 (284)
T ss_dssp             CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence            22   111111122222212222    2234678999999999999999998874

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=4.4e-09  Score=87.37  Aligned_cols=125  Identities=15%  Similarity=0.117  Sum_probs=84.4

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC---CCceeEE
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS---NDCFDVV  129 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V  129 (259)
                      ...++.+|||++||+|.-+.++++. +.. .++++|+++..++.++++++..|+.++.+...|...+...   .+.||.|
T Consensus        91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~V  170 (293)
T d2b9ea1          91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYI  170 (293)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEE
Confidence            3467899999999999999888875 222 8999999999999999999999998899999888765422   2579999


Q ss_pred             Eecce---eeeeeeCCCCCCC--CCc---hhHH-HHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          130 IEKAT---MEVLFVNSGDPWN--PQP---ETVT-KVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       130 ~~~~~---l~~~~~~~~~~~~--~~~---~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ++..+   ...+-..+...|.  +..   .... ...+++..+. .++|||.++.++++-
T Consensus       171 L~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl  229 (293)
T d2b9ea1         171 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL  229 (293)
T ss_dssp             EECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred             eecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence            96533   1111111222232  111   1112 2245666666 479999999998864

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=2e-09  Score=84.71  Aligned_cols=100  Identities=17%  Similarity=0.202  Sum_probs=86.6

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ++.+|+|+|+|.|.-++.++-..+. +++.+|.+.+-+...++.....++.++.+++..+.+.. ...+||+|++.++. 
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~~-  142 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFA-  142 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSS-
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhhc-
Confidence            4579999999999999999988887 99999999999999999999999989999999888865 34689999986642 


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                                        ....+++-+.+.++++|.+++.-
T Consensus       143 ------------------~~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         143 ------------------SLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             ------------------SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ------------------CHHHHHHHHHHhcCCCcEEEEEC
Confidence                              44578888999999999999864

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.94  E-value=3.1e-10  Score=92.00  Aligned_cols=98  Identities=18%  Similarity=0.210  Sum_probs=77.8

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ...+|||+|||+|..+..++++.++ +++++|+-+ .++.+.      ..+++.+..+|+.+ +.+  ..|+++...++|
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~------~~~r~~~~~~d~~~-~~P--~ad~~~l~~vlh  150 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAP------SYPGVEHVGGDMFV-SIP--KADAVFMKWICH  150 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCC------CCTTEEEEECCTTT-CCC--CCSCEECSSSST
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcc------cCCceEEecccccc-cCC--CcceEEEEEEee
Confidence            3578999999999999999999888 999999854 333221      22468999999876 333  357788778777


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .+             +.++...+|++++++|+|||.+++++.
T Consensus       151 ~~-------------~d~~~~~iL~~~~~al~pgg~~li~d~  179 (243)
T d1kyza2         151 DW-------------SDEHCLKFLKNCYEALPDNGKVIVAEC  179 (243)
T ss_dssp             TS-------------CHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred             cC-------------CHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence            65             567889999999999999999998764

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.91  E-value=2.3e-09  Score=90.43  Aligned_cols=121  Identities=20%  Similarity=0.206  Sum_probs=83.9

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhc----C-CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYND----G-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~----~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  130 (259)
                      .++.+|||.|||+|.++..+.+.    . .. .++|+|+++.+++.|+.++...+. ...+.++|..... ....||+|+
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~~fD~vi  193 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL-LVDPVDVVI  193 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC-CCCCEEEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-hhhhhcccccccc-ccccccccc
Confidence            45678999999999999887643    2 22 799999999999999998877764 5667777766533 356899999


Q ss_pred             ecceeeeeeeCCC--CCC-CCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          131 EKATMEVLFVNSG--DPW-NPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       131 ~~~~l~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +++++........  ... ............++..+.+.|+|||++.++.+.
T Consensus       194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~  245 (328)
T d2f8la1         194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  245 (328)
T ss_dssp             EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence            9999854311100  000 000011112345799999999999999887653

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.91  E-value=8.4e-09  Score=82.84  Aligned_cols=78  Identities=15%  Similarity=0.336  Sum_probs=65.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.++++|||||||+|.++..+++.+. +++++|+++.+++.+++++...  ++++++++|+.+..++......|+++-++
T Consensus        19 ~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~--~n~~i~~~D~l~~~~~~~~~~~vv~NLPY   95 (235)
T d1qama_          19 LNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH--DNFQVLNKDILQFKFPKNQSYKIFGNIPY   95 (235)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC--CSEEEECCCGGGCCCCSSCCCEEEEECCG
T ss_pred             CCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcc--cchhhhhhhhhhccccccccceeeeeehh
Confidence            46889999999999999999999977 9999999999999999987643  57999999999877655444567777666


Q ss_pred             e
Q 025039          136 E  136 (259)
Q Consensus       136 ~  136 (259)
                      +
T Consensus        96 n   96 (235)
T d1qama_          96 N   96 (235)
T ss_dssp             G
T ss_pred             h
Confidence            4

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.90  E-value=1.6e-09  Score=89.24  Aligned_cols=109  Identities=15%  Similarity=0.257  Sum_probs=81.1

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc----------CCCCeEEEEcccCCCcCCCCc
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK----------GYKEVKVLEADMLDLPFSNDC  125 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~~~v~~~~~d~~~~~~~~~~  125 (259)
                      .+++.+||.+|+|.|..+..+.+....+++++|+++++++.|++.+...          .-++++++.+|+...-...++
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            4567899999999999999988776558999999999999999866432          235689999998764323568


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHH--HHHHHHHHHhcccCCcEEEEEe
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ||+|++...- ..    +        ....  -.++++.+++.|+|||++++-.
T Consensus       150 yDvIi~D~~~-~~----~--------~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         150 FDVIIADSTD-PV----G--------PAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             EEEEEEECCC-CC-----------------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCEEEEeCCC-CC----C--------CcccccCHHHHHhhHhhcCCCceEEEec
Confidence            9999964321 00    0        0011  2579999999999999998754

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.81  E-value=4e-09  Score=88.27  Aligned_cols=113  Identities=16%  Similarity=0.170  Sum_probs=80.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhc-----CCCCeEEEEcccCCC-cCCCCceeE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLK-----GYKEVKVLEADMLDL-PFSNDCFDV  128 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~~-~~~~~~fD~  128 (259)
                      .+.+++||.+|+|.|..+..+++.... +++++|+++.+++.|++.+...     .-++++++.+|+... .....+||+
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            346789999999999999999887544 8999999999999999886432     224689999998773 233468999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      |++... +.. ..      ..+...---.++++.+++.|+|||++++-
T Consensus       155 Ii~D~~-dp~-~~------~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         155 VIIDLT-DPV-GE------DNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             EEEECC-CCB-ST------TCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEeCC-Ccc-cc------cchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence            995421 100 00      00000001257999999999999999874

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.80  E-value=1.1e-09  Score=88.59  Aligned_cols=79  Identities=23%  Similarity=0.375  Sum_probs=67.7

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      +.++.+|||||||+|.++..|++.+. +|+++|+++.+++.+++++..  .++++++++|+.++.++...++.|+++-++
T Consensus        27 ~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~--~~n~~ii~~D~l~~~~~~~~~~~vv~NLPY  103 (245)
T d1yuba_          27 LKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKL--NTRVTLIHQDILQFQFPNKQRYKIVGNIPY  103 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTT--CSEEEECCSCCTTTTCCCSSEEEEEEECCS
T ss_pred             CCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhh--ccchhhhhhhhhccccccceeeeEeeeeeh
Confidence            45788999999999999999999987 999999999999988877653  347999999999988777778888888776


Q ss_pred             ee
Q 025039          136 EV  137 (259)
Q Consensus       136 ~~  137 (259)
                      +.
T Consensus       104 ~I  105 (245)
T d1yuba_         104 HL  105 (245)
T ss_dssp             SS
T ss_pred             hh
Confidence            54

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=1.4e-08  Score=86.54  Aligned_cols=77  Identities=22%  Similarity=0.369  Sum_probs=66.1

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEec
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEK  132 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~  132 (259)
                      .++.+|||+.||+|.+++.|++.+. +|+|+|.++.+++.|+++++.+++.++.++.++..+..    .....+|+|+..
T Consensus       211 ~~~~~vlDLycG~G~fsl~La~~~~-~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD  289 (358)
T d1uwva2         211 QPEDRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  289 (358)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCCceEEEecccccccchhcccccc-EEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeC
Confidence            4678999999999999999998876 99999999999999999999999999999999886621    234579999865


Q ss_pred             ce
Q 025039          133 AT  134 (259)
Q Consensus       133 ~~  134 (259)
                      ++
T Consensus       290 PP  291 (358)
T d1uwva2         290 PA  291 (358)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.75  E-value=5.8e-09  Score=82.64  Aligned_cols=123  Identities=18%  Similarity=0.217  Sum_probs=79.7

Q ss_pred             HHHHhhccc--CCCCCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC
Q 025039           47 HFRHLVQPH--IKPNSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS  122 (259)
Q Consensus        47 ~~~~~l~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~  122 (259)
                      .+..++...  ..++.+|||.|||+|.++..+.+....  .++|+|+++.++..+         ....++++|..... .
T Consensus         6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~~-~   75 (223)
T d2ih2a1           6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWE-P   75 (223)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCC-C
T ss_pred             HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhccc-c
Confidence            344444433  346789999999999998888765332  799999998654322         23567788876654 3


Q ss_pred             CCceeEEEecceeeeeeeCCCCCCCC--------------CchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          123 NDCFDVVIEKATMEVLFVNSGDPWNP--------------QPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       123 ~~~fD~V~~~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ...||+|+++.++..........-..              ..........++..+.+.|+|||++.++.++
T Consensus        76 ~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~  146 (223)
T d2ih2a1          76 GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  146 (223)
T ss_dssp             SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence            46899999998875442222111000              0001112345788899999999999988653

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.70  E-value=2.4e-08  Score=82.59  Aligned_cols=111  Identities=16%  Similarity=0.196  Sum_probs=81.0

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhc----CCCCeEEEEcccCCC-cCCCCceeEEE
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADMLDL-PFSNDCFDVVI  130 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~-~~~~~~fD~V~  130 (259)
                      +.+.+||-+|+|.|..+..+++.... +++++|+++.+++.+++.+...    .-++++++.+|+.+. ....+.||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            45789999999999999999887543 8999999999999999876432    225689999998763 33356899999


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHH--HHHHHHHHHhcccCCcEEEEEecC
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +...-...    +        ....  -.++++.+++.|+|||++++-..+
T Consensus       168 ~D~~dp~~----~--------~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         168 IDSTDPTA----G--------QGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             EEC----------------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCCCc----C--------chhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence            64321000    0        0001  258999999999999999986443

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.68  E-value=3.2e-08  Score=79.19  Aligned_cols=101  Identities=13%  Similarity=0.151  Sum_probs=84.1

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEEecc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~  133 (259)
                      .+.+|+|+|+|.|.-++.++-..+. +++.+|.+.+-+...+.-....++.++.+++..+..+.   ...++||+|++.+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence            4678999999999999999877666 99999999999999999888889989999887765533   1235899999876


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +.                   .+..+++-+...+++||.+++.-
T Consensus       150 va-------------------~l~~ll~~~~~~l~~~g~~i~~K  174 (239)
T d1xdza_         150 VA-------------------RLSVLSELCLPLVKKNGLFVALK  174 (239)
T ss_dssp             CS-------------------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             hh-------------------CHHHHHHHHhhhcccCCEEEEEC
Confidence            43                   45678999999999999999863

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=5.3e-08  Score=80.19  Aligned_cols=113  Identities=14%  Similarity=0.193  Sum_probs=81.0

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhh----cCCCCeEEEEcccCCC-cCCCCceeEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLL----KGYKEVKVLEADMLDL-PFSNDCFDVV  129 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~----~~~~~v~~~~~d~~~~-~~~~~~fD~V  129 (259)
                      .+.+++||-+|.|.|..+..+.+... .+++++|+++.+++.|++.+..    ..-++++++.+|+... ....++||+|
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            35678999999999999999988743 3999999999999999987642    1225699999998763 2334689999


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ++... +-.    +.      ...---.++++.+++.|+|||++++-..+
T Consensus       156 i~D~~-~p~----~~------~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         156 ITDSS-DPM----GP------AESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             EEECC----------------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEcCC-CCC----Cc------ccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            96531 100    00      00011247899999999999999986543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.63  E-value=6.5e-08  Score=79.26  Aligned_cols=111  Identities=21%  Similarity=0.274  Sum_probs=81.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhh----cCCCCeEEEEcccCCC-cCCCCceeEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLL----KGYKEVKVLEADMLDL-PFSNDCFDVV  129 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~----~~~~~v~~~~~d~~~~-~~~~~~fD~V  129 (259)
                      .+.+.+||-+|.|.|..+..+.+... .+++.+|+++.+++.|++.+..    ..-++++++.+|+... .....+||+|
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            35678999999999999999998643 4999999999999999997632    2225689999998763 2335689999


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +....- -.    +.++.      ---.++++.+++.|+|||+++.-.
T Consensus       153 i~D~~~-p~----~~~~~------L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         153 MVDSTE-PV----GPAVN------LFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             EESCSS-CC----SCCCC------CSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCC-CC----Ccchh------hccHHHHHHHHhhcCCCceEEEec
Confidence            965321 00    11100      012479999999999999999754

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.63  E-value=6e-08  Score=80.10  Aligned_cols=113  Identities=17%  Similarity=0.265  Sum_probs=82.2

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhc----CCCCeEEEEcccCCCc--CCCCceeE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADMLDLP--FSNDCFDV  128 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~--~~~~~fD~  128 (259)
                      .+.+.+||-+|.|.|..+..+.+... .+++++|+++.+++.+++.+...    .-++++++.+|..+.-  ...++||+
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv  157 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  157 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence            35678999999999999999988754 38999999999999999876321    1256899999986632  33468999


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      |+.... +        +..  +...---.++++.+++.|+|||++++-..+
T Consensus       158 Ii~D~~-d--------p~~--~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         158 VIVDSS-D--------PIG--PAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             EEECCC-C--------TTS--GGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEcCC-C--------CCC--cchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            996421 1        000  001111357999999999999999986543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.62  E-value=3.9e-08  Score=81.72  Aligned_cols=111  Identities=17%  Similarity=0.256  Sum_probs=79.4

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCC-CeEEEeeCCHHHHHHHHHHHhhc----CCCCeEEEEcccCCC-cCCCCceeEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADMLDL-PFSNDCFDVV  129 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~-~~~~~~fD~V  129 (259)
                      .+.+.+||-+|.|.|..+..+++... .+++.+|+++.+++.+++.+...    .-++++++.+|+.+. .....+||+|
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            34678999999999999999998754 38999999999999999976432    225689999988763 2345689999


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ++...-. .    +      +...---.++++.+++.|+|||+++.-.
T Consensus       184 I~D~~dp-~----~------~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         184 ITDSSDP-V----G------PAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             EECCC------------------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCC-C----C------cchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            9653211 0    0      0011123578999999999999999864

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.57  E-value=1.1e-07  Score=73.18  Aligned_cols=114  Identities=16%  Similarity=0.357  Sum_probs=83.2

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----CCCCceeEEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVVI  130 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~V~  130 (259)
                      ..++..++|..+|.|..+..+++.+. +|+|+|.++.+++.+++..    .+++.+++.+..++.     ...+.+|.|+
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~~----~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl   90 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLH----LPGLTVVQGNFRHLKRHLAALGVERVDGIL   90 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC----CTTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhcc----ccceeEeehHHHHHHHHHHHcCCCccCEEE
Confidence            46789999999999999999998866 9999999999999998752    246888888776643     3346799988


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ..-.+...-.+.     + .+........|+.....|+|||.+++.++..
T Consensus        91 ~DLGvSs~qld~-----~-~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          91 ADLGVSSFHLDD-----P-SDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             EECSCCHHHHHC-----G-GTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             EEccCCHHHhhc-----c-hHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            642221100000     0 0233455668899999999999999998854

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=7.1e-08  Score=74.10  Aligned_cols=113  Identities=25%  Similarity=0.314  Sum_probs=78.2

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhc-CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc--------CCCC
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSND  124 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~~  124 (259)
                      .++++.+|||+||++|..+..+.+. +.. .++++|+.+.           ..++++.++.+|+.+..        ....
T Consensus        19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccCc
Confidence            4678899999999999999988875 333 8999998751           24467899999987621        2346


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCCcc
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  182 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  182 (259)
                      .+|+|++.+..+..    ++....+....+-....+.-+.+.|++||.+++-.|....
T Consensus        88 ~~DlVlSD~ap~~s----g~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~  141 (180)
T d1ej0a_          88 KVQVVMSDMAPNMS----GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG  141 (180)
T ss_dssp             CEEEEEECCCCCCC----SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred             ceeEEEecccchhc----ccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc
Confidence            79999998765432    1100000112233345677788999999999998776433

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.51  E-value=1.9e-07  Score=81.30  Aligned_cols=133  Identities=17%  Similarity=0.167  Sum_probs=90.7

Q ss_pred             chHHHHhhcccC--CCCCcEEEEcCCCCcchHHHHhcCC--------------CeEEEeeCCHHHHHHHHHHHhhcCCC-
Q 025039           45 YSHFRHLVQPHI--KPNSSVLELGCGNSRLSEGLYNDGI--------------TAITCIDLSAVAVEKMQERLLLKGYK-  107 (259)
Q Consensus        45 ~~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~-  107 (259)
                      .+.+.+++...+  .++.+|+|.+||+|.++..+.+...              ..+.|+|+++.+...|+-++..++.. 
T Consensus       147 P~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~  226 (425)
T d2okca1         147 PRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT  226 (425)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             chhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcc
Confidence            345566555444  3468999999999999988766411              14999999999999999988777653 


Q ss_pred             -CeEEEEcccCCCcCCCCceeEEEecceeeeeeeCCC--CCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          108 -EVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSG--DPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       108 -~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                       ...+...|..... +...||+|++++++........  ...............++..+.+.|++||++.++.+
T Consensus       227 ~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p  299 (425)
T d2okca1         227 DRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  299 (425)
T ss_dssp             SCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence             2566777776643 4568999999999853211100  00000011122334689999999999999988765

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.1e-06  Score=71.83  Aligned_cols=78  Identities=21%  Similarity=0.400  Sum_probs=65.2

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCcCCCCceeEEEecce
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKAT  134 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~  134 (259)
                      +.++..|||+|+|+|.++..|++.+. +++++|+++.+++..++++..... .+++++.+|+.+..++  .++.|+++-+
T Consensus        19 ~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~--~~~~vV~NLP   95 (278)
T d1zq9a1          19 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLP   95 (278)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECC
T ss_pred             CCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh--hhhhhhcchH
Confidence            45788999999999999999999987 999999999999999998876543 3689999999887654  3567888766


Q ss_pred             ee
Q 025039          135 ME  136 (259)
Q Consensus       135 l~  136 (259)
                      ++
T Consensus        96 Y~   97 (278)
T d1zq9a1          96 YQ   97 (278)
T ss_dssp             GG
T ss_pred             HH
Confidence            64

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=4.7e-07  Score=73.02  Aligned_cols=78  Identities=17%  Similarity=0.230  Sum_probs=60.6

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCC-----CceeEEE
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN-----DCFDVVI  130 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~fD~V~  130 (259)
                      ..++..|||||||+|.++..|++.+. +++++|+++.+++..+++....  +++.++.+|+.++.+..     +.--.|+
T Consensus        19 ~~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~--~~~~ii~~D~l~~~~~~~~~~~~~~~~vv   95 (252)
T d1qyra_          19 PQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAEKMGQPLRVF   95 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHHHHTSCEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhhc--cchhHHhhhhhhhcccccccccCCCeEEE
Confidence            45688999999999999999999887 8999999999999998765433  47999999998765321     1223566


Q ss_pred             ecceee
Q 025039          131 EKATME  136 (259)
Q Consensus       131 ~~~~l~  136 (259)
                      .+-+++
T Consensus        96 gNlPY~  101 (252)
T d1qyra_          96 GNLPYN  101 (252)
T ss_dssp             EECCTT
T ss_pred             ecchHH
Confidence            665553

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.26  E-value=4.7e-07  Score=77.17  Aligned_cols=101  Identities=17%  Similarity=0.100  Sum_probs=75.8

Q ss_pred             CCCcEEEEcCCCCcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCC---------------eEEEEcccCCCc-
Q 025039           58 PNSSVLELGCGNSRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKE---------------VKVLEADMLDLP-  120 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~---------------v~~~~~d~~~~~-  120 (259)
                      ++.+|||..||+|..++.++. .+..+|++.|+|+.+++.++++++.++..+               +.+.+.|+..+. 
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            578999999999999996555 555599999999999999999998887543               344455554322 


Q ss_pred             CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .....||+|...+ +.                  ....+|+.+.+.++.||.|.+..
T Consensus       125 ~~~~~fDvIDiDP-fG------------------s~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         125 ERHRYFHFIDLDP-FG------------------SPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             HSTTCEEEEEECC-SS------------------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcCcCCcccCCC-CC------------------CcHHHHHHHHHHhccCCEEEEEe
Confidence            2345799988543 21                  22469999999999999999863

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=2.1e-06  Score=76.47  Aligned_cols=132  Identities=12%  Similarity=0.044  Sum_probs=83.0

Q ss_pred             hHHHHhhcccC--CCCCcEEEEcCCCCcchHHHHhc----CC---------------CeEEEeeCCHHHHHHHHHHHhhc
Q 025039           46 SHFRHLVQPHI--KPNSSVLELGCGNSRLSEGLYND----GI---------------TAITCIDLSAVAVEKMQERLLLK  104 (259)
Q Consensus        46 ~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~----~~---------------~~v~~vD~s~~~~~~a~~~~~~~  104 (259)
                      +.+.+++...+  .++.+|+|.+||+|.++..+.+.    ..               ..++|+|+++.+...|+-++..+
T Consensus       150 ~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~  229 (524)
T d2ar0a1         150 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH  229 (524)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred             cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh
Confidence            44555554433  35679999999999998876553    11               15899999999999999888766


Q ss_pred             CCCC-----eEEEEcccCCCc-CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          105 GYKE-----VKVLEADMLDLP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       105 ~~~~-----v~~~~~d~~~~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +...     ..+...+..... ....+||+|++++++..-...........+ ....-..++..+.+.|+|||++.++.+
T Consensus       230 ~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~-~~~~~~~Fi~~~l~~Lk~gGr~aiIlP  308 (524)
T d2ar0a1         230 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHP-TSNKQLCFMQHIIETLHPGGRAAVVVP  308 (524)
T ss_dssp             TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSC-CSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccc-cccccHHHHHHHHHhccccCcEEEEEe
Confidence            6421     123333333211 234579999999998432111000001111 112234589999999999999998765

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.09  E-value=2.3e-06  Score=68.04  Aligned_cols=98  Identities=16%  Similarity=0.225  Sum_probs=63.6

Q ss_pred             CCCcEEEEcCCCCcchHHHHhc----CCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeE
Q 025039           58 PNSSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDV  128 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~  128 (259)
                      ++.+|||+|++.|..+..++..    +.. +++++|+++......     ....++++++.+|..+..    +....+|+
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~~~~~I~~i~gDs~~~~~~~~l~~~~~dl  154 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----ASDMENITLHQGDCSDLTTFEHLREMAHPL  154 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GGGCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hccccceeeeecccccHHHHHHHHhcCCCE
Confidence            4679999999999887766642    444 899999986533222     122357999999876532    23446787


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      |+..+. |.              ....... + ...++|+|||++++.+
T Consensus       155 IfID~~-H~--------------~~~v~~~-~-~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         155 IFIDNA-HA--------------NTFNIMK-W-AVDHLLEEGDYFIIED  186 (232)
T ss_dssp             EEEESS-CS--------------SHHHHHH-H-HHHHTCCTTCEEEECS
T ss_pred             EEEcCC-cc--------------hHHHHHH-H-HHhcccCcCCEEEEEc
Confidence            774432 21              1122223 3 3568999999999865

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.69  E-value=6.9e-05  Score=56.51  Aligned_cols=100  Identities=19%  Similarity=0.230  Sum_probs=68.7

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-----c-CCCCc
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----P-FSNDC  125 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~  125 (259)
                      ..++++.+||-+|||. |..+..+++. |..+|+++|.+++.++.+++.    |.  ..++...-.+.     . .....
T Consensus        23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga--~~~i~~~~~~~~~~v~~~t~g~G   96 (174)
T d1jqba2          23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GA--TDILNYKNGHIEDQVMKLTNGKG   96 (174)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TC--SEEECGGGSCHHHHHHHHTTTSC
T ss_pred             hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Cc--cccccccchhHHHHHHHHhhccC
Confidence            3577899999999998 8888888886 444899999999999988764    32  22222111110     0 12346


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      +|+|+..-..                     ...++...++++|+|.++++....
T Consensus        97 ~D~vid~~g~---------------------~~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2          97 VDRVIMAGGG---------------------SETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             EEEEEECSSC---------------------TTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             cceEEEccCC---------------------HHHHHHHHHHHhcCCEEEEEeecC
Confidence            9998853211                     246778889999999999976543

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.68  E-value=5.9e-05  Score=60.10  Aligned_cols=76  Identities=16%  Similarity=0.134  Sum_probs=58.4

Q ss_pred             CcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcC---------CCCeEEEEcccCC-CcCCCCceeEE
Q 025039           60 SSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG---------YKEVKVLEADMLD-LPFSNDCFDVV  129 (259)
Q Consensus        60 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------~~~v~~~~~d~~~-~~~~~~~fD~V  129 (259)
                      .+|||..||.|..+..++..|. +|+++|-++......+..+....         ..+++++++|..+ +.-....||+|
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI  168 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred             CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence            4899999999999999999997 89999999988776665443321         1258999999765 22224579999


Q ss_pred             Eecceee
Q 025039          130 IEKATME  136 (259)
Q Consensus       130 ~~~~~l~  136 (259)
                      +..++|.
T Consensus       169 YlDPMFp  175 (250)
T d2oyra1         169 YLDPMFP  175 (250)
T ss_dssp             EECCCCC
T ss_pred             EECCCCc
Confidence            9877663

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.68  E-value=6.5e-05  Score=56.18  Aligned_cols=101  Identities=16%  Similarity=0.179  Sum_probs=67.4

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC--------Cc-CCC
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--------LP-FSN  123 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--------~~-~~~  123 (259)
                      ..++++.+||-+|||. |.++..+++....+++++|.+++.++.+++.    +. ...+.......        +. ...
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga-~~~~~~~~~~~~~~~~~~~~~~~~g   96 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA-DVTLVVDPAKEEESSIIERIRSAIG   96 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC-SEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred             hCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CC-cEEEeccccccccchhhhhhhcccc
Confidence            3467899999999997 7777777766333999999999999998875    21 22222111111        00 113


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ..+|+|+....                     ....++.+.++++|+|.++++....
T Consensus        97 ~g~D~vid~~g---------------------~~~~~~~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2          97 DLPNVTIDCSG---------------------NEKCITIGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             SCCSEEEECSC---------------------CHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred             cCCceeeecCC---------------------ChHHHHHHHHHHhcCCceEEEecCC
Confidence            56899885321                     1256788889999999999876543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.59  E-value=0.00022  Score=53.53  Aligned_cols=97  Identities=18%  Similarity=0.210  Sum_probs=66.9

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-----cCCCCcee
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD  127 (259)
                      .++++.+||-+|||. |..+..+++. |...++++|.++..++.+++.    |.  ..++..+-.+.     ...++.+|
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga--~~~i~~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA--THVINSKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC--SEEEETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC--eEEEeCCCcCHHHHHHHHcCCCCc
Confidence            467899999999987 6667767655 665888999999999988764    32  23333222211     12345799


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+..-.                     ....++...++++|+|.++++..
T Consensus        99 ~vid~~G---------------------~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          99 FALESTG---------------------SPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             EEEECSC---------------------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEEEcCC---------------------cHHHHHHHHhcccCceEEEEEee
Confidence            9884321                     13567888999999999998654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.59  E-value=9.9e-05  Score=55.86  Aligned_cols=98  Identities=14%  Similarity=0.154  Sum_probs=66.2

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc---ccCCC-----c-CCC
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DMLDL-----P-FSN  123 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~-----~-~~~  123 (259)
                      .++++.+||-+|||. |..+..+++. |..+|+++|.+++.++.+++.    |. . .++..   +..+.     . ...
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga-~-~vi~~~~~~~~~~~~~i~~~~~~   98 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GA-D-LTLNRRETSVEERRKAIMDITHG   98 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TC-S-EEEETTTSCHHHHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cc-e-EEEeccccchHHHHHHHHHhhCC
Confidence            356889999999987 8888888776 444899999999999988764    32 1 22221   11110     0 123


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ..+|+|+..-.-                     ...++.+.++|+|||+++++...
T Consensus        99 ~g~Dvvid~vG~---------------------~~~~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2          99 RGADFILEATGD---------------------SRALLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             SCEEEEEECSSC---------------------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             CCceEEeecCCc---------------------hhHHHHHHHHhcCCCEEEEEeec
Confidence            469998853211                     24678888999999999987644

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.47  E-value=6.5e-05  Score=59.41  Aligned_cols=113  Identities=16%  Similarity=0.213  Sum_probs=65.5

Q ss_pred             cCCCCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc-ccCCCcCCCCceeEEEec
Q 025039           55 HIKPNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDLPFSNDCFDVVIEK  132 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~~fD~V~~~  132 (259)
                      ++.+..+|+|+|||+|..+..++....- .+.|+++--..-+.- ......+..-+++... |+..  .+.+..|+|+|.
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P-~~~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcD  139 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEP-IPMSTYGWNLVRLQSGVDVFF--IPPERCDTLLCD  139 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCSTTGGGEEEECSCCTTT--SCCCCCSEEEEC
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCC-ccccccccccccchhhhhHHh--cCCCcCCEEEee
Confidence            4567889999999999999999887532 677777632100000 0011111111344333 2222  345789999986


Q ss_pred             ceeeeeeeCCCCCCCCCch-hHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          133 ATMEVLFVNSGDPWNPQPE-TVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      ..-.     .++     +. ......++|+-+.+.|+|||-|++-.+.+
T Consensus       140 m~es-----s~~-----~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p  178 (257)
T d2p41a1         140 IGES-----SPN-----PTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  178 (257)
T ss_dssp             CCCC-----CSS-----HHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CCCC-----CCC-----chhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence            4311     011     11 11122367888889999999999866653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00032  Score=52.32  Aligned_cols=99  Identities=21%  Similarity=0.203  Sum_probs=67.5

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC-------c-CCCC
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-------P-FSND  124 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-------~-~~~~  124 (259)
                      .++++.+||-+|||+ |.++..+++. |..+|+++|.+++.++.+++.    |.+.  +...+-.+.       . ....
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~~--~~~~~~~~~~~~~~~~~~~~g~   96 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GADL--VLQISKESPQEIARKVEGQLGC   96 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCSE--EEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCcc--cccccccccccccccccccCCC
Confidence            467889999999998 7777777665 554899999999999988764    3222  222111110       0 1124


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                      .+|+|+....-                     ...++.+.+.+++||++++.....
T Consensus        97 g~Dvvid~~G~---------------------~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2          97 KPEVTIECTGA---------------------EASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             CCSEEEECSCC---------------------HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             CceEEEeccCC---------------------chhHHHHHHHhcCCCEEEEEecCC
Confidence            68998853211                     357888999999999999876543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=2.3e-05  Score=58.78  Aligned_cols=100  Identities=18%  Similarity=0.174  Sum_probs=65.1

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE-cccCCC-cCCCCceeEE
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLDL-PFSNDCFDVV  129 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~-~~~~~~fD~V  129 (259)
                      ..++++.+||.+|+|. |..+..+++. |. +++++|.+++.++.+++.    |.+  .++. .+-.+. ....+.+|+|
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l----Ga~--~~i~~~~~~~~~~~~~~~~d~v   95 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GAD--HYIATLEEGDWGEKYFDTFDLI   95 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS--EEEEGGGTSCHHHHSCSCEEEE
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc----CCc--EEeeccchHHHHHhhhcccceE
Confidence            4577899999999996 7777777765 65 899999999988888764    432  2222 111111 1123579988


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +..-....                   ...+....+.|+|+|+++++...
T Consensus        96 i~~~~~~~-------------------~~~~~~~~~~l~~~G~iv~~G~~  126 (168)
T d1piwa2          96 VVCASSLT-------------------DIDFNIMPKAMKVGGRIVSISIP  126 (168)
T ss_dssp             EECCSCST-------------------TCCTTTGGGGEEEEEEEEECCCC
T ss_pred             EEEecCCc-------------------cchHHHHHHHhhccceEEEeccc
Confidence            75311100                   01244578899999999987643

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.37  E-value=0.00016  Score=54.50  Aligned_cols=99  Identities=18%  Similarity=0.171  Sum_probs=68.6

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-C------cCCCC
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-L------PFSND  124 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~------~~~~~  124 (259)
                      ..++++.+||-+|||. |..+..+++. |..+|+.+|.+++.++.+++.    |.  ..++...-.+ .      .....
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga--~~~i~~~~~~~~~~~~~~~~~~~   97 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GA--TDCLNPRELDKPVQDVITELTAG   97 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC--SEEECGGGCSSCHHHHHHHHHTS
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CC--CcccCCccchhhhhhhHhhhhcC
Confidence            4567899999999998 8888888876 544899999999988888774    32  2222211111 0      01235


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEecC
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSFG  179 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  179 (259)
                      .+|+++....                     ....+....+.++|| |.++++...
T Consensus        98 G~d~vie~~G---------------------~~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2          98 GVDYSLDCAG---------------------TAQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             CBSEEEESSC---------------------CHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             CCcEEEEecc---------------------cchHHHHHHHHhhcCCeEEEecCCC
Confidence            7899885321                     135788899999996 999987543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.31  E-value=0.00018  Score=57.04  Aligned_cols=55  Identities=18%  Similarity=0.140  Sum_probs=48.4

Q ss_pred             HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHh
Q 025039           47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL  102 (259)
Q Consensus        47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~  102 (259)
                      -+..++.....++..|||.-||+|..+.++.+.|- +.+|+|++++.++.|++++.
T Consensus       201 L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         201 LIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence            35556666667899999999999999999999987 99999999999999999875

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.29  E-value=0.00015  Score=59.28  Aligned_cols=58  Identities=10%  Similarity=0.075  Sum_probs=50.7

Q ss_pred             hHHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc
Q 025039           46 SHFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK  104 (259)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~  104 (259)
                      .-+..++.....++..|||.-||+|..+.++.+.|- +.+|+|++++.++.|++++...
T Consensus       238 ~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         238 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred             HHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhc
Confidence            445566666778999999999999999999999988 9999999999999999987643

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.29  E-value=0.00052  Score=51.21  Aligned_cols=98  Identities=16%  Similarity=0.224  Sum_probs=66.7

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC----c-CCCCcee
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----P-FSNDCFD  127 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~-~~~~~fD  127 (259)
                      .++++.+||-+|||. |..+..+++. |...++++|.+++.++.+++.    +.  ..++..+-...    . .....+|
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga--~~~i~~~~~~~~~~~~~~~~~g~d  102 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA--DHVVDARRDPVKQVMELTRGRGVN  102 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC--SEEEETTSCHHHHHHHHTTTCCEE
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc--ceeecCcccHHHHHHHhhCCCCce
Confidence            467889999999998 6676666654 655899999999988888764    22  23332221110    0 1234699


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +|+....-                     ...++...+.|++||.++++.+.
T Consensus       103 ~vid~~g~---------------------~~~~~~a~~~l~~~G~iv~~G~~  133 (172)
T d1h2ba2         103 VAMDFVGS---------------------QATVDYTPYLLGRMGRLIIVGYG  133 (172)
T ss_dssp             EEEESSCC---------------------HHHHHHGGGGEEEEEEEEECCCS
T ss_pred             EEEEecCc---------------------chHHHHHHHHHhCCCEEEEEeCc
Confidence            98853221                     24688899999999999987653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.28  E-value=0.00054  Score=50.72  Aligned_cols=96  Identities=14%  Similarity=0.138  Sum_probs=63.2

Q ss_pred             cCCCCCcEEEEcCCC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----CCCCceeE
Q 025039           55 HIKPNSSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDV  128 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~  128 (259)
                      .++++.+||-+|||. |..+..+++....+|+++|.++..++.+++.    |.  ..++...-.+..     ...+.+++
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~----Ga--~~~i~~~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL----GA--SLTVNARQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC--SEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc----Cc--cccccccchhHHHHHHHhhcCCccc
Confidence            467899999999998 7777777776334999999999999888764    32  222322211110     11233444


Q ss_pred             EEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          129 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       129 V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      |++...                      ...++...+.|+|+|+++++..
T Consensus        98 i~~~~~----------------------~~~~~~~~~~l~~~G~iv~~G~  125 (166)
T d1llua2          98 LVTAVS----------------------NSAFGQAIGMARRGGTIALVGL  125 (166)
T ss_dssp             EECCSC----------------------HHHHHHHHTTEEEEEEEEECCC
T ss_pred             cccccc----------------------chHHHHHHHHhcCCcEEEEEEe
Confidence            443221                      2467788899999999998754

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.23  E-value=0.00029  Score=55.91  Aligned_cols=115  Identities=17%  Similarity=0.107  Sum_probs=79.8

Q ss_pred             CCCCcEEEEcCCCCcchHHHHhcCC-----------------------------------------CeEEEeeCCHHHHH
Q 025039           57 KPNSSVLELGCGNSRLSEGLYNDGI-----------------------------------------TAITCIDLSAVAVE   95 (259)
Q Consensus        57 ~~~~~vLDiGcG~G~~~~~l~~~~~-----------------------------------------~~v~~vD~s~~~~~   95 (259)
                      ..+..++|..||+|.+.+..+-...                                         ..++|.|+++.+++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            3456799999999999887765210                                         03578888899988


Q ss_pred             HH---HHHHhhcCCCC-eEEEEcccCCCc-----CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhc
Q 025039           96 KM---QERLLLKGYKE-VKVLEADMLDLP-----FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRV  166 (259)
Q Consensus        96 ~a---~~~~~~~~~~~-v~~~~~d~~~~~-----~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (259)
                      .|   ++++...++.. +.+...|+++..     ......++|++|+++..-....+      ....+...++...+.+.
T Consensus       129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~------~~~~~~~~~~~~~l~~~  202 (249)
T d1o9ga_         129 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEG------QVPGQPVAGLLRSLASA  202 (249)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSS------CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccc------cchHHHHHHHHHHHHcc
Confidence            88   45788888766 889999987643     12345799999998854322111      01235677888889998


Q ss_pred             ccCCcEEEEEe
Q 025039          167 LKPDGLFISVS  177 (259)
Q Consensus       167 LkpgG~l~~~~  177 (259)
                      +.....++++.
T Consensus       203 ~p~~s~~~it~  213 (249)
T d1o9ga_         203 LPAHAVIAVTD  213 (249)
T ss_dssp             SCTTCEEEEEE
T ss_pred             CCCCcEEEEeC
Confidence            96666666654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.16  E-value=0.0011  Score=50.51  Aligned_cols=113  Identities=12%  Similarity=0.162  Sum_probs=70.0

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE---cccCC-C-c-CCCCc
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE---ADMLD-L-P-FSNDC  125 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~~-~-~-~~~~~  125 (259)
                      ..++++.+||.+|||. |..+..+++. |..+|+++|.++..++.|++.    |.  ..++.   .|+.+ . . .....
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga--~~~~~~~~~~~~~~i~~~t~g~g   94 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF--EIADLSLDTPLHEQIAALLGEPE   94 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC--EEEETTSSSCHHHHHHHHHSSSC
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc--cEEEeCCCcCHHHHHHHHhCCCC
Confidence            4578999999999998 7677777765 555999999999999988765    32  12221   11110 0 0 12346


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +|+++..-.....-..    +  ..-......+.++.+.++++|||.++++..
T Consensus        95 ~D~vid~vG~~~~~~~----~--~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2          95 VDCAVDAVGFEARGHG----H--EGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             EEEEEECCCTTCBCSS----T--TGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             cEEEEECccccccCCc----c--cceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence            8998854221110000    0  000011224689999999999999998764

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.08  E-value=0.00042  Score=57.33  Aligned_cols=58  Identities=17%  Similarity=0.162  Sum_probs=49.4

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcC-CCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD  118 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~  118 (259)
                      .+..|||+|+|.|.++..+.+.+ +.+++++|+++..++..++.+..   .++.++.+|+..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~---~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG---SPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT---SSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC---CCcEEEeCchhh
Confidence            46789999999999999999874 44899999999999999987642   368899998865

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.06  E-value=0.00032  Score=56.17  Aligned_cols=57  Identities=25%  Similarity=0.326  Sum_probs=50.1

Q ss_pred             HHHHhhcccCCCCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc
Q 025039           47 HFRHLVQPHIKPNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK  104 (259)
Q Consensus        47 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~  104 (259)
                      -+..++.....++..|||.-||+|..+.++.+.|- +.+|+|+++..++.|++++...
T Consensus       196 L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         196 VIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            45566666678999999999999999999999988 9999999999999999998643

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.03  E-value=0.00089  Score=50.09  Aligned_cols=100  Identities=16%  Similarity=0.163  Sum_probs=63.9

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-C------cCCCC
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-L------PFSND  124 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~------~~~~~  124 (259)
                      ..++++.+||-+|||. |..+..+++. |..+|+++|.+++.++.+++.    |.  ..++...-.+ .      ....+
T Consensus        23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga--~~~i~~~~~d~~~~~~~~~~~~~   96 (174)
T d1p0fa2          23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GA--TECLNPKDYDKPIYEVICEKTNG   96 (174)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TC--SEEECGGGCSSCHHHHHHHHTTS
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CC--cEEEcCCCchhHHHHHHHHhcCC
Confidence            3578899999999998 6666666664 655899999999999998764    32  2223211111 0      12235


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhccc-CCcEEEEEecCC
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLK-PDGLFISVSFGQ  180 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~  180 (259)
                      .+|+|+.....                     ...+......++ ++|.++++....
T Consensus        97 G~d~vid~~g~---------------------~~~~~~~~~~~~~~~G~~v~vG~~~  132 (174)
T d1p0fa2          97 GVDYAVECAGR---------------------IETMMNALQSTYCGSGVTVVLGLAS  132 (174)
T ss_dssp             CBSEEEECSCC---------------------HHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred             CCcEEEEcCCC---------------------chHHHHHHHHHHHhcCceEEEEEec
Confidence            68888753211                     245555666565 569999876543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.02  E-value=0.0019  Score=47.81  Aligned_cols=99  Identities=21%  Similarity=0.295  Sum_probs=65.6

Q ss_pred             ccCCCCCcEEEEcC-CC-CcchHHHHh-cCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc------CCCC
Q 025039           54 PHIKPNSSVLELGC-GN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSND  124 (259)
Q Consensus        54 ~~~~~~~~vLDiGc-G~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~  124 (259)
                      ..++++.+||-+|| |. |..+..+++ .|..+|+++|.+++.++.+++.    |.+  .++..+-.+..      ....
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~--~~i~~~~~~~~~~~~~~~~~~   96 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD--YVINASMQDPLAEIRRITESK   96 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTTS
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc--eeeccCCcCHHHHHHHHhhcc
Confidence            34678899999997 43 666665555 4655999999999998888764    321  22322222110      1235


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .+|+|+....-                     ...++.+.+.++|||.++++...
T Consensus        97 ~~d~vid~~g~---------------------~~~~~~a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2          97 GVDAVIDLNNS---------------------EKTLSVYPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             CEEEEEESCCC---------------------HHHHTTGGGGEEEEEEEEECCSS
T ss_pred             cchhhhccccc---------------------chHHHhhhhhcccCCEEEEeccc
Confidence            69998863221                     35677788999999999987543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.01  E-value=0.0013  Score=48.38  Aligned_cols=98  Identities=14%  Similarity=0.160  Sum_probs=63.3

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC----c-CCCCcee
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----P-FSNDCFD  127 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~-~~~~~fD  127 (259)
                      ..++++.+||-.|||+ |..+..+++....+++++|.+++.++.+++.    |.+  .++...-.+.    . ...+.+|
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~----Ga~--~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GAD--LVVNPLKEDAAKFMKEKVGGVHA   96 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TCS--EEECTTTSCHHHHHHHHHSSEEE
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc----Ccc--eecccccchhhhhcccccCCCce
Confidence            3577899999999998 6666666666433899999999998888763    321  2221111110    0 1223445


Q ss_pred             EEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          128 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       128 ~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +|++...                      ...+....++|+|+|.++++...
T Consensus        97 ~v~~~~~----------------------~~~~~~a~~~l~~~G~i~~~g~~  126 (168)
T d1rjwa2          97 AVVTAVS----------------------KPAFQSAYNSIRRGGACVLVGLP  126 (168)
T ss_dssp             EEESSCC----------------------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             EEeecCC----------------------HHHHHHHHHHhccCCceEecccc
Confidence            5443221                      25688899999999999987543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0017  Score=48.28  Aligned_cols=94  Identities=21%  Similarity=0.269  Sum_probs=63.1

Q ss_pred             cCCCCCcEEEEcC-CC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc---ccCC-C--cCCCCc
Q 025039           55 HIKPNSSVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DMLD-L--PFSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~-~--~~~~~~  125 (259)
                      .++++.+||-.|+ |. |..++.+++. |. ++++++-+++..+.+++.    |.+.  ++..   |+.+ +  ......
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~----Ga~~--vi~~~~~~~~~~i~~~t~~~g   97 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQN----GAHE--VFNHREVNYIDKIKKYVGEKG   97 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT----TCSE--EEETTSTTHHHHHHHHHCTTC
T ss_pred             CCCCCCEEEEEeccccccccccccccccCc-cccccccccccccccccc----Cccc--ccccccccHHHHhhhhhccCC
Confidence            4678999999997 43 7777777776 55 899999898877777653    4322  2221   1111 0  123457


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +|+|+...                    .  ...++...++|+|+|.++.+.
T Consensus        98 ~d~v~d~~--------------------g--~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2          98 IDIIIEML--------------------A--NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             EEEEEESC--------------------H--HHHHHHHHHHEEEEEEEEECC
T ss_pred             ceEEeecc--------------------c--HHHHHHHHhccCCCCEEEEEe
Confidence            99998632                    1  246788889999999999864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.0012  Score=48.88  Aligned_cols=98  Identities=18%  Similarity=0.221  Sum_probs=64.4

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC-CcCCCCceeEEEe
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIE  131 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~  131 (259)
                      ..++++.+||-+|||. |.++..+++....+++++|.+++..+.+++.    |.+  .++...-.. .......+|+++.
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l----Gad--~~i~~~~~~~~~~~~~~~D~vid   99 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GAD--EVVNSRNADEMAAHLKSFDFILN   99 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS--EEEETTCHHHHHTTTTCEEEEEE
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc----CCc--EEEECchhhHHHHhcCCCceeee
Confidence            4578899999999987 8888888776333788899998888777654    322  222211111 1122357998885


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      .-.-                     ...+....+.++|+|.++++..
T Consensus       100 ~~g~---------------------~~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         100 TVAA---------------------PHNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             CCSS---------------------CCCHHHHHTTEEEEEEEEECCC
T ss_pred             eeec---------------------chhHHHHHHHHhcCCEEEEecc
Confidence            3211                     1246677889999999998754

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.66  E-value=0.0047  Score=45.50  Aligned_cols=91  Identities=16%  Similarity=0.252  Sum_probs=62.2

Q ss_pred             cEEEEcCCC--CcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           61 SVLELGCGN--SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        61 ~vLDiGcG~--G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      +|+=+|||.  |.++..|.+.|+. +|+++|.+++.++.+++.    +.  +.....+....  .....|+|+..-+   
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~--~~~~~~~~~~~--~~~~~dlIila~p---   71 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI--IDEGTTSIAKV--EDFSPDFVMLSSP---   71 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS--CSEEESCGGGG--GGTCCSEEEECSC---
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc--chhhhhhhhhh--hccccccccccCC---
Confidence            588899997  4567778788876 899999999999988875    21  22122222221  2235788885432   


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                                     .....+++.++.+.++++..+.-+.
T Consensus        72 ---------------~~~~~~vl~~l~~~~~~~~ii~d~~   96 (171)
T d2g5ca2          72 ---------------VRTFREIAKKLSYILSEDATVTDQG   96 (171)
T ss_dssp             ---------------HHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             ---------------chhhhhhhhhhhccccccccccccc
Confidence                           3566788999999999887776543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.66  E-value=0.0021  Score=48.02  Aligned_cols=47  Identities=26%  Similarity=0.268  Sum_probs=38.7

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHH
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQER  100 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~  100 (259)
                      ..++++.+||-+|||. |..+..+++. |..+|+++|.+++.++.|++.
T Consensus        25 ~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          25 GKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            3477899999999998 6666666665 545999999999999999886

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.50  E-value=0.00033  Score=51.99  Aligned_cols=104  Identities=11%  Similarity=0.126  Sum_probs=68.0

Q ss_pred             CCCcEEEEcCCC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceee
Q 025039           58 PNSSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME  136 (259)
Q Consensus        58 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  136 (259)
                      ++.+|+-+|+|. |..++..+......|+.+|.+++.++..+..+..    .+.....+-..+...-...|+|+....+-
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~----~~~~~~~~~~~l~~~~~~aDivI~aalip  106 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----RVELLYSNSAEIETAVAEADLLIGAVLVP  106 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----GSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc----cceeehhhhhhHHHhhccCcEEEEeeecC
Confidence            578999999998 7777776665334999999999999988876642    35555443322221123589999753321


Q ss_pred             eeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 025039          137 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  180 (259)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  180 (259)
                                     +...+.-+-++..+.||||.+++=+...+
T Consensus       107 ---------------G~~aP~lIt~~mv~~Mk~GSVIVDvaidq  135 (168)
T d1pjca1         107 ---------------GRRAPILVPASLVEQMRTGSVIVDVAVDQ  135 (168)
T ss_dssp             ---------------TSSCCCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred             ---------------CcccCeeecHHHHhhcCCCcEEEEeecCC
Confidence                           11111234577889999999998443333

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.36  E-value=0.0096  Score=43.52  Aligned_cols=87  Identities=18%  Similarity=0.222  Sum_probs=59.7

Q ss_pred             cEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeee
Q 025039           61 SVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL  138 (259)
Q Consensus        61 ~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~  138 (259)
                      +|.-+|+|.  +.++..+.+.|. +|++.|.+++.++.+++.    +.  +.....+...    -...|+|+..-     
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~----~~--~~~~~~~~~~----~~~~DiIilav-----   65 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVER----QL--VDEAGQDLSL----LQTAKIIFLCT-----   65 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----TS--CSEEESCGGG----GTTCSEEEECS-----
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHh----hc--cceeeeeccc----ccccccccccC-----
Confidence            577889986  456778888888 899999999988877654    21  1111222221    13579888532     


Q ss_pred             eeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          139 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                                   +.....++++++...++++.+++-+
T Consensus        66 -------------p~~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          66 -------------PIQLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             -------------CHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             -------------cHhhhhhhhhhhhhhcccccceeec
Confidence                         2356778999999999988877644

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.29  E-value=0.0064  Score=49.23  Aligned_cols=67  Identities=15%  Similarity=0.202  Sum_probs=53.2

Q ss_pred             cEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcC-CCCceeEEEecc
Q 025039           61 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKA  133 (259)
Q Consensus        61 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~  133 (259)
                      +|||+-||.|.+...+.+.|...+.++|+++.+.+.-+.++.      -.+..+|+.++.. .-..+|+++...
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~------~~~~~~Di~~~~~~~~~~~dll~~g~   69 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEFPKCDGIIGGP   69 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC------SEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------CCCccCChhhCCHhHcccccEEeecc
Confidence            699999999999999999998667799999999988887752      3557789888642 223689988654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.28  E-value=0.013  Score=43.08  Aligned_cols=97  Identities=13%  Similarity=0.133  Sum_probs=63.5

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc-ccCCC------cCCCC
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDL------PFSND  124 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~------~~~~~  124 (259)
                      ..++++.+||-.|||. |.+++.+++. |...|+++|.+++.++.+++.    |.  ..++.. +-.+.      .....
T Consensus        24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga--~~~i~~~~~~~~~~~~~~~~~~~   97 (176)
T d2fzwa2          24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GA--TECINPQDFSKPIQEVLIEMTDG   97 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TC--SEEECGGGCSSCHHHHHHHHTTS
T ss_pred             hCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CC--cEEEeCCchhhHHHHHHHHHcCC
Confidence            3578999999999985 5566656554 655899999999988888764    32  222221 11110      01235


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .+|+|+..-.                     ....++.+..++++||.++++.
T Consensus        98 g~D~vid~~G---------------------~~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          98 GVDYSFECIG---------------------NVKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             CBSEEEECSC---------------------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCcEeeecCC---------------------CHHHHHHHHHhhcCCceeEEEE
Confidence            6999985321                     1256788889999998877653

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0033  Score=51.48  Aligned_cols=71  Identities=23%  Similarity=0.352  Sum_probs=54.4

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCC--eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---CCCCceeEEEecc
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKA  133 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~  133 (259)
                      +.+|+|+.||.|.+...+...|..  -+.++|+++.+++..+.++     ++..++++|+.++.   ++...+|+++...
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~~~~Dll~ggp   76 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence            568999999999999988888875  3679999999999888775     35566777887654   2223689998764


Q ss_pred             e
Q 025039          134 T  134 (259)
Q Consensus       134 ~  134 (259)
                      +
T Consensus        77 P   77 (343)
T d1g55a_          77 P   77 (343)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.96  E-value=0.0022  Score=47.67  Aligned_cols=96  Identities=14%  Similarity=0.113  Sum_probs=61.0

Q ss_pred             ccCCCCCcEEEEcC-CC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEe
Q 025039           54 PHIKPNSSVLELGC-GN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIE  131 (259)
Q Consensus        54 ~~~~~~~~vLDiGc-G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  131 (259)
                      ..++++.+||-.|+ |. |..++.+++....++++++.+++..+.+++.    |.+.+ +...+..........+|+|+.
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~l----Ga~~~-i~~~~~~~~~~~~~g~D~v~d   97 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL----GAEEA-ATYAEVPERAKAWGGLDLVLE   97 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT----TCSEE-EEGGGHHHHHHHTTSEEEEEE
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccc----cccee-eehhhhhhhhhcccccccccc
Confidence            35678999999985 44 7777777776333899999998877777653    43222 111121111112356999885


Q ss_pred             cceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          132 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ..                  +     ..+....+.|+|+|.++.+.
T Consensus        98 ~~------------------G-----~~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          98 VR------------------G-----KEVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             CS------------------C-----TTHHHHHTTEEEEEEEEEC-
T ss_pred             cc------------------c-----hhHHHHHHHHhcCCcEEEEe
Confidence            21                  1     13567788999999999764

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=95.91  E-value=0.0064  Score=49.54  Aligned_cols=70  Identities=14%  Similarity=0.074  Sum_probs=54.3

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCC-CCceeEEEecce
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS-NDCFDVVIEKAT  134 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~  134 (259)
                      .+.+|||+.||.|.+...|.+.|...+.++|+++.+++.-+.++...       .++|+.++... -..+|+++...+
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-------~~~Di~~~~~~~~~~~Dll~ggpP   80 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-------PEGDITQVNEKTIPDHDILCAGFP   80 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-------CBSCGGGSCGGGSCCCSEEEEECC
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-------CcCchhcCchhhcceeeeeecccc
Confidence            56899999999999999999999866778999999999999887421       24677665421 236899986543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.91  E-value=0.023  Score=42.09  Aligned_cols=95  Identities=13%  Similarity=0.123  Sum_probs=64.7

Q ss_pred             cCCCCCcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC------cCCCCce
Q 025039           55 HIKPNSSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL------PFSNDCF  126 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~------~~~~~~f  126 (259)
                      .++++.+||-.|++.  |..++.+++....+|+++.-+++..+.+++.    +.+.  ++..+-.+.      ......+
T Consensus        26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~~--vi~~~~~~~~~~~~~~~~~~Gv   99 (182)
T d1v3va2          26 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFDA--AFNYKTVNSLEEALKKASPDGY   99 (182)
T ss_dssp             CCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCSE--EEETTSCSCHHHHHHHHCTTCE
T ss_pred             CCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhhh--hcccccccHHHHHHHHhhcCCC
Confidence            467899999988866  6677777776444999999998887777664    3222  222111111      1234569


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      |+|+..-.                      .+.++...++|+|+|.++.+.
T Consensus       100 d~v~D~vG----------------------~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2         100 DCYFDNVG----------------------GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             EEEEESSC----------------------HHHHHHHGGGEEEEEEEEECC
T ss_pred             ceeEEecC----------------------chhhhhhhhhccCCCeEEeec
Confidence            99885211                      257889999999999999864

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.015  Score=42.96  Aligned_cols=95  Identities=17%  Similarity=0.167  Sum_probs=63.7

Q ss_pred             cCCCCCcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE---cccCC-C-c-CCCCce
Q 025039           55 HIKPNSSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE---ADMLD-L-P-FSNDCF  126 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~~-~-~-~~~~~f  126 (259)
                      .++++.+||-.|+|.  |..+..+++....+|++++.+++..+.+++.    |.+  .++.   .|+.+ + . -....+
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga~--~vi~~~~~d~~~~v~~~t~g~g~   98 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW--QVINYREEDLVERLKEITGGKKV   98 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CCe--EEEECCCCCHHHHHHHHhCCCCe
Confidence            467899999997775  6777777776333999999999998888764    432  2222   12111 0 0 134579


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      |+|+....                      .+.+......++|+|.+++..
T Consensus        99 d~v~d~~g----------------------~~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          99 RVVYDSVG----------------------RDTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             EEEEECSC----------------------GGGHHHHHHTEEEEEEEEECC
T ss_pred             EEEEeCcc----------------------HHHHHHHHHHHhcCCeeeecc
Confidence            99886432                      135678889999999988754

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.84  E-value=0.0099  Score=44.09  Aligned_cols=94  Identities=20%  Similarity=0.261  Sum_probs=60.8

Q ss_pred             cCCCCCcEEEEcC-CC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc------CCCCc
Q 025039           55 HIKPNSSVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDC  125 (259)
Q Consensus        55 ~~~~~~~vLDiGc-G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~  125 (259)
                      .++++.+||-.|+ |. |..++.+++. |. +++++.-+++..+.+++.    |.+  .++...-.++.      .....
T Consensus        22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~----Ga~--~vi~~~~~~~~~~v~~~t~~~g   94 (183)
T d1pqwa_          22 RLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRL----GVE--YVGDSRSVDFADEILELTDGYG   94 (183)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTT----CCS--EEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccc----ccc--ccccCCccCHHHHHHHHhCCCC
Confidence            4678899999884 43 7777777766 55 888888888777766643    432  22221111110      13457


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +|+|+....                      .+.++.+.++|+++|+++.+.
T Consensus        95 ~d~v~d~~g----------------------~~~~~~~~~~l~~~G~~v~~G  124 (183)
T d1pqwa_          95 VDVVLNSLA----------------------GEAIQRGVQILAPGGRFIELG  124 (183)
T ss_dssp             EEEEEECCC----------------------THHHHHHHHTEEEEEEEEECS
T ss_pred             EEEEEeccc----------------------chHHHHHHHHhcCCCEEEEEc
Confidence            999996321                      135677789999999999863

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=95.59  E-value=0.016  Score=48.06  Aligned_cols=124  Identities=12%  Similarity=0.161  Sum_probs=76.7

Q ss_pred             CCcEEEEcCCCCcchHHHHhc--------------C--CC-eEEEeeCCHHHHHHHHHHHhhcC--CCC--eEEEEcccC
Q 025039           59 NSSVLELGCGNSRLSEGLYND--------------G--IT-AITCIDLSAVAVEKMQERLLLKG--YKE--VKVLEADML  117 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~--------------~--~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~--v~~~~~d~~  117 (259)
                      .-+|.|+||.+|..+..+...              .  +. +|..-|+-..-....-+.+....  .++  +..+.+.+.
T Consensus        52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY  131 (359)
T d1m6ex_          52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence            367999999999877433221              1  22 67777765443333333332211  112  334556776


Q ss_pred             CCcCCCCceeEEEecceeeeeeeCC-------CCCCCC--Cc---------hhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          118 DLPFSNDCFDVVIEKATMEVLFVNS-------GDPWNP--QP---------ETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       118 ~~~~~~~~fD~V~~~~~l~~~~~~~-------~~~~~~--~~---------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .--+|.++.+++++...+|.+-.-+       +.-|..  .+         .-..|...+|+.=++-|+|||+++++.++
T Consensus       132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g  211 (359)
T d1m6ex_         132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG  211 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred             hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence            6557889999999999998773211       122221  11         11456778888889999999999998876


Q ss_pred             Ccc
Q 025039          180 QPH  182 (259)
Q Consensus       180 ~~~  182 (259)
                      .+.
T Consensus       212 r~~  214 (359)
T d1m6ex_         212 RRS  214 (359)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.33  E-value=0.035  Score=40.77  Aligned_cols=98  Identities=16%  Similarity=0.175  Sum_probs=60.3

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEE-cccCCC------cCCCC
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLDL------PFSND  124 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~------~~~~~  124 (259)
                      ..++++.+||-+|+|. |..+..+++. +..+|+++|.+++..+.+++.    +.  ..++. .+..+.      ....+
T Consensus        24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga--~~~i~~~~~~~~~~~~~~~~~~~   97 (176)
T d2jhfa2          24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GA--TECVNPQDYKKPIQEVLTEMSNG   97 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC--SEEECGGGCSSCHHHHHHHHTTS
T ss_pred             hCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CC--eeEEecCCchhHHHHHHHHHhcC
Confidence            3578899999999986 4444444444 545999999999998888775    22  12221 121111      02335


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCC-cEEEEEec
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  178 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  178 (259)
                      .+|+|+.....                     ...++.+...++++ |.+++...
T Consensus        98 G~D~vid~~G~---------------------~~~~~~a~~~~~~~~g~~~~~~~  131 (176)
T d2jhfa2          98 GVDFSFEVIGR---------------------LDTMVTALSCCQEAYGVSVIVGV  131 (176)
T ss_dssp             CBSEEEECSCC---------------------HHHHHHHHHHBCTTTCEEEECSC
T ss_pred             CCCEEEecCCc---------------------hhHHHHHHHHHhcCCcceEEecC
Confidence            79998864321                     24566677778776 55555433

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.14  Score=39.96  Aligned_cols=77  Identities=14%  Similarity=0.240  Sum_probs=57.6

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCc----------CCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLP----------FSN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~----------~~~  123 (259)
                      +++.+|-.|++.|.   ++..|++.|. +|+.++.+++.++.+.+.+...+.+ .+.++..|+.+..          ...
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            47789999998864   5666777788 8999999999999988887776654 3677788887622          112


Q ss_pred             CceeEEEeccee
Q 025039          124 DCFDVVIEKATM  135 (259)
Q Consensus       124 ~~fD~V~~~~~l  135 (259)
                      +..|+++.+...
T Consensus        88 g~iD~lVnnAg~   99 (257)
T d1xg5a_          88 SGVDICINNAGL   99 (257)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEecccc
Confidence            578998876543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.78  E-value=0.0095  Score=44.37  Aligned_cols=99  Identities=15%  Similarity=0.145  Sum_probs=63.7

Q ss_pred             cCCCCCcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC--CcCCCCceeEEE
Q 025039           55 HIKPNSSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--LPFSNDCFDVVI  130 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~V~  130 (259)
                      ..+++.+||--|++.  |..++.+++....+|+++--+++-.+.+++.    |.+.+--...+..+  .....+.+|+|+
T Consensus        28 ~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l----Ga~~vi~~~~~~~~~~~~~~~~gvD~vi  103 (176)
T d1xa0a2          28 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAKEVLAREDVMAERIRPLDKQRWAAAV  103 (176)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCSEEEECC---------CCSCCEEEEE
T ss_pred             CCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc----ccceeeecchhHHHHHHHhhccCcCEEE
Confidence            345688999999755  6778888766433899999888888887764    32221111111111  112346799988


Q ss_pred             ecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          131 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ..-.                      ...+....+.|+|||+++.+...
T Consensus       104 d~vg----------------------g~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         104 DPVG----------------------GRTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             ECST----------------------TTTHHHHHHTEEEEEEEEECSCC
T ss_pred             EcCC----------------------chhHHHHHHHhCCCceEEEeecc
Confidence            5321                      13588899999999999987654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.72  E-value=0.15  Score=35.28  Aligned_cols=64  Identities=19%  Similarity=0.277  Sum_probs=44.2

Q ss_pred             cEEEEcCCC-Ccc-hHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEe
Q 025039           61 SVLELGCGN-SRL-SEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE  131 (259)
Q Consensus        61 ~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~  131 (259)
                      +|+-+|+|. |.. +..|.+.|. .|+.+|.+++.++.+++.+      ++.++.+|..+..    ..-...|.+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI------DALVINGDCTKIKTLEDAGIEDADMYIA   71 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh------hhhhccCcccchhhhhhcChhhhhhhcc
Confidence            577788765 433 334445676 8999999999998876642      4678889987632    22346888876

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.50  E-value=0.091  Score=38.27  Aligned_cols=47  Identities=21%  Similarity=0.267  Sum_probs=35.5

Q ss_pred             ccCCCCCcEEEEcCCC-CcchHHHHh-cCCCeEEEeeCCHHHHHHHHHH
Q 025039           54 PHIKPNSSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQER  100 (259)
Q Consensus        54 ~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~  100 (259)
                      ..++++.+||-+|||. |..+..++. .+..+|+++|.+++.++.+++.
T Consensus        24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             hCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            3578899999999998 444444444 3554899999999988888764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.32  E-value=0.0036  Score=46.85  Aligned_cols=44  Identities=18%  Similarity=0.172  Sum_probs=35.3

Q ss_pred             CCCcEEEEcCCC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHH
Q 025039           58 PNSSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERL  101 (259)
Q Consensus        58 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~  101 (259)
                      ++.+||-+|+|. |..+...+..-...|+.+|.++..++..++..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~   72 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLG   72 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTT
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhh
Confidence            578999999998 77776666553339999999999998888754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.16  E-value=0.18  Score=36.58  Aligned_cols=97  Identities=15%  Similarity=0.165  Sum_probs=58.9

Q ss_pred             CcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-CCCCeEEEEccc---CCCcCCCCceeEEEecc
Q 025039           60 SSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-GYKEVKVLEADM---LDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        60 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~---~~~~~~~~~fD~V~~~~  133 (259)
                      ++|.-+|+|.  +.++..|++.|. +|+.+|.+++.++..++.-... ..+.........   .+....-...|+|+..-
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            5788999998  346667777888 9999999998888877642110 001111111100   01110013578888532


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEE
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  175 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  175 (259)
                      .                  ......+++++...|+++..+++
T Consensus        81 ~------------------~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          81 P------------------AIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             C------------------GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             c------------------hhHHHHHHHHhhhccCCCCEEEE
Confidence            1                  13456889999999999886654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.92  E-value=0.29  Score=37.86  Aligned_cols=76  Identities=17%  Similarity=0.287  Sum_probs=55.5

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      +++.+|-.|++.|.   .+..|++.|. +|+.+|.+++.++.+.+.+...+. ++..+..|+.+..          ...+
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~g   86 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHK   86 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            57788888887762   4555566677 899999999999998888876663 5778888987621          1235


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+...
T Consensus        87 ~iDilvnnag~   97 (251)
T d2c07a1          87 NVDILVNNAGI   97 (251)
T ss_dssp             CCCEEEECCCC
T ss_pred             Cceeeeecccc
Confidence            79988876543

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.75  E-value=0.21  Score=36.80  Aligned_cols=95  Identities=14%  Similarity=0.169  Sum_probs=58.4

Q ss_pred             CCCC--CcEEEEcC-C-CCcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEc---ccCC-Cc-CCCCc
Q 025039           56 IKPN--SSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DMLD-LP-FSNDC  125 (259)
Q Consensus        56 ~~~~--~~vLDiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~-~~-~~~~~  125 (259)
                      ++++  .+||-.|+ | .|..++.+++. |...++++.-+++....+...+   +.  ..++..   ++.+ +. .....
T Consensus        26 ~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~---ga--d~vi~~~~~~~~~~~~~~~~~G  100 (187)
T d1vj1a2          26 ISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL---GF--DAAVNYKTGNVAEQLREACPGG  100 (187)
T ss_dssp             CCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS---CC--SEEEETTSSCHHHHHHHHCTTC
T ss_pred             CCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc---cc--eEEeeccchhHHHHHHHHhccC
Confidence            4554  67999884 4 48999999986 5447888787766555443322   32  222222   1111 00 12356


Q ss_pred             eeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          126 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       126 fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +|+|+..-.                      .+.++...+.|+|+|+++.+.
T Consensus       101 vDvv~D~vG----------------------g~~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2         101 VDVYFDNVG----------------------GDISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             EEEEEESSC----------------------HHHHHHHHTTEEEEEEEEEC-
T ss_pred             ceEEEecCC----------------------chhHHHHhhhccccccEEEec
Confidence            999985321                      246788999999999999764

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=93.14  E-value=0.089  Score=39.03  Aligned_cols=100  Identities=11%  Similarity=0.134  Sum_probs=56.6

Q ss_pred             cCCCCCcEEEEcCCC---CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEE-EEcccCCCc--------C
Q 025039           55 HIKPNSSVLELGCGN---SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKV-LEADMLDLP--------F  121 (259)
Q Consensus        55 ~~~~~~~vLDiGcG~---G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~-~~~d~~~~~--------~  121 (259)
                      .++++.+||-+.+|+   |..++.+++. |. +++++--++...+...+.++..|.+.+-. ...+..+..        .
T Consensus        25 ~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~  103 (189)
T d1gu7a2          25 KLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQ  103 (189)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHH
T ss_pred             CCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhh
Confidence            466888888884443   5566666665 55 77776544444444444555556433211 111221111        0


Q ss_pred             CCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          122 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       122 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ....+|+|+..     +             +    ...+..+.+.|+|+|.++.+.
T Consensus       104 ~g~~vdvv~D~-----v-------------g----~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         104 SGGEAKLALNC-----V-------------G----GKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HTCCEEEEEES-----S-------------C----HHHHHHHHHTSCTTCEEEECC
T ss_pred             ccCCceEEEEC-----C-------------C----cchhhhhhhhhcCCcEEEEEC
Confidence            13468988842     1             1    134567789999999998764

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=92.65  E-value=0.99  Score=35.77  Aligned_cols=104  Identities=12%  Similarity=0.082  Sum_probs=69.5

Q ss_pred             CCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCC---CeEEEEcccCCC-c-------CCCCce
Q 025039           59 NSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK---EVKVLEADMLDL-P-------FSNDCF  126 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~---~v~~~~~d~~~~-~-------~~~~~f  126 (259)
                      ...|+.+|||-=.-...+ ..... +++-+|. +.+++.-++.+...+..   +...+..|+.+- .       +.....
T Consensus        90 ~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~p  167 (297)
T d2uyoa1          90 IRQFVILASGLDSRAYRL-DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR  167 (297)
T ss_dssp             CCEEEEETCTTCCHHHHS-CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred             CCeEEEeCcccCChhhhc-CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCC
Confidence            356777999875544433 22222 6777774 88888777777665532   256666676541 1       122334


Q ss_pred             eEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          127 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       127 D~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      -++++-+++.++             +.+...++++.+.....||+.+++..
T Consensus       168 tl~i~EGvl~YL-------------~~~~~~~ll~~i~~~~~~GS~l~~d~  205 (297)
T d2uyoa1         168 TAWLAEGLLMYL-------------PATAQDGLFTEIGGLSAVGSRIAVET  205 (297)
T ss_dssp             EEEEECSCGGGS-------------CHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             EEEEEccccccC-------------CHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            467777888877             56889999999999999999998753

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.22  E-value=0.61  Score=36.31  Aligned_cols=111  Identities=16%  Similarity=0.177  Sum_probs=70.1

Q ss_pred             CCcEEEEcCCCCcch----HHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           59 NSSVLELGCGNSRLS----EGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        59 ~~~vLDiGcG~G~~~----~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      |++|.-|-.|++.++    ..|++.+..+|+.++.+++.++.+.+.+...+ .++.++..|+.+..          ...+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            567755544444433    44555533389999999999999888887766 36788888987732          1225


Q ss_pred             ceeEEEecceeeeeeeCCCCCCCCCchhHHHH-----------HHHHHHHHhcccCCcEEEEEe
Q 025039          125 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKV-----------MAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       125 ~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      ..|+++.+..+...    ..  ... ...++.           ..+.+.+...|+++|.++.+.
T Consensus        81 ~iDiLVnNAGi~~~----~~--~~~-~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          81 GLDVLVNNAGIAFK----VA--DPT-PFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             SEEEEEECCCCCCC----TT--CCS-CHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CcEEEEEcCCcCCC----CC--ccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            79999988654221    00  000 011122           246677788899999988764

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=92.19  E-value=0.16  Score=41.78  Aligned_cols=75  Identities=16%  Similarity=0.277  Sum_probs=47.4

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcC-------CC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEE
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDG-------IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVV  129 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~-------~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V  129 (259)
                      +...|+|+|+|+|.++.-+.+..       .. +++.+|.|+...+.-++++..  ...+.+. .++.+++   ...-+|
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~--~~~i~w~-~~~~~~~---~~~g~i  152 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--IRNIHWH-DSFEDVP---EGPAVI  152 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--CSSEEEE-SSGGGSC---CSSEEE
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc--cccceec-cChhhcc---cCCeEE
Confidence            44679999999999987765531       12 689999999877777766553  2345543 3333333   122566


Q ss_pred             Eecceeeee
Q 025039          130 IEKATMEVL  138 (259)
Q Consensus       130 ~~~~~l~~~  138 (259)
                      +++-.||++
T Consensus       153 iaNE~fDAl  161 (365)
T d1zkda1         153 LANEYFDVL  161 (365)
T ss_dssp             EEESSGGGS
T ss_pred             EecccCccc
Confidence            666555443

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=92.07  E-value=0.1  Score=38.11  Aligned_cols=96  Identities=17%  Similarity=0.236  Sum_probs=62.5

Q ss_pred             CCCCCcEEEEcCCC--CcchHHHHhc-CCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC--C-cCCCCceeEE
Q 025039           56 IKPNSSVLELGCGN--SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--L-PFSNDCFDVV  129 (259)
Q Consensus        56 ~~~~~~vLDiGcG~--G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~-~~~~~~fD~V  129 (259)
                      .+++..||--|++.  |..++.+++. |. +|+++.-+++-.+.+++.    +.+.+ +...+...  . ....+.+|+|
T Consensus        21 ~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~l----Gad~v-i~~~~~~~~~~~~~~~~gvd~v   94 (167)
T d1tt7a2          21 SPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GASEV-ISREDVYDGTLKALSKQQWQGA   94 (167)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCSEE-EEHHHHCSSCCCSSCCCCEEEE
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhh----cccce-EeccchhchhhhcccCCCceEE
Confidence            33566799877533  6777778776 55 899999988777777654    43222 22222211  1 1234579998


Q ss_pred             EecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          130 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      +..-.                      ...+....+.|+|+|.++++...
T Consensus        95 id~vg----------------------g~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          95 VDPVG----------------------GKQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             EESCC----------------------THHHHHHHTTEEEEEEEEECCCS
T ss_pred             EecCc----------------------HHHHHHHHHHhccCceEEEeecc
Confidence            75311                      25788899999999999987554

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.38  Score=37.10  Aligned_cols=76  Identities=13%  Similarity=0.121  Sum_probs=58.6

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      .|+.+|--|++.|.   ++..+++.|. +|+.+|.+++.++...+.+...+ .++..+..|+.+..          ...+
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG-AKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            47788888988864   6677788898 89999999999999888887665 46788888987732          1235


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+..+
T Consensus        84 ~idilinnag~   94 (244)
T d1yb1a_          84 DVSILVNNAGV   94 (244)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCceeEeeccc
Confidence            68988876554

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=90.95  E-value=0.26  Score=36.34  Aligned_cols=98  Identities=18%  Similarity=0.193  Sum_probs=65.0

Q ss_pred             CcEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------C-C---------CCeEEEEcccCCCc
Q 025039           60 SSVLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G-Y---------KEVKVLEADMLDLP  120 (259)
Q Consensus        60 ~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~-~---------~~v~~~~~d~~~~~  120 (259)
                      .+|--+|+|+ |. .+..++..|. +|+.+|.+++.++.+.++....       + .         .++.. ..+...  
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~--   80 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSYGD--   80 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSSTT--
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-cccccc--
Confidence            4688999987 43 4556677788 8999999999998887764321       1 0         00111 111111  


Q ss_pred             CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          121 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       121 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                        -...|+|+-.-                +++.+..++++.++-++++|+-++.-.+.+
T Consensus        81 --~~~adlViEav----------------~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~  121 (186)
T d1wdka3          81 --FGNVDLVVEAV----------------VENPKVKQAVLAEVENHVREDAILASNTST  121 (186)
T ss_dssp             --GGGCSEEEECC----------------CSCHHHHHHHHHHHHTTSCTTCEEEECCSS
T ss_pred             --ccccceeeeee----------------cchHHHHHHHHHHHHhhcCCCeeEEecccc
Confidence              13467777421                256678889999999999999998875544

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.87  E-value=0.49  Score=32.29  Aligned_cols=88  Identities=10%  Similarity=-0.018  Sum_probs=55.4

Q ss_pred             CCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEecceeeeeeeC
Q 025039           67 CGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEKATMEVLFVN  141 (259)
Q Consensus        67 cG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~~~l~~~~~~  141 (259)
                      ||.|..+..+++.-.. .++.+|.++...+.++..       ++.++.+|..+..    ..-...+.+++...       
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~-------   71 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS-------GANFVHGDPTRVSDLEKANVRGARAVIVNLE-------   71 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-------TCEEEESCTTSHHHHHHTTCTTCSEEEECCS-------
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-------CccccccccCCHHHHHHhhhhcCcEEEEecc-------
Confidence            4556777777776433 789999999988776542       5788889987632    22345777775221       


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          142 SGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                                + ......+-...+.+.|...++.....
T Consensus        72 ----------~-d~~n~~~~~~~r~~~~~~~iia~~~~   98 (129)
T d2fy8a1          72 ----------S-DSETIHCILGIRKIDESVRIIAEAER   98 (129)
T ss_dssp             ----------S-HHHHHHHHHHHHHHCSSSCEEEECSS
T ss_pred             ----------c-hhhhHHHHHHHHHHCCCceEEEEEcC
Confidence                      1 22233344455667888877765443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.86  E-value=0.3  Score=33.56  Aligned_cols=63  Identities=16%  Similarity=0.232  Sum_probs=40.6

Q ss_pred             cEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEe
Q 025039           61 SVLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE  131 (259)
Q Consensus        61 ~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~  131 (259)
                      +++-+|+|. |. ++..|.+.|. .|+.+|.+++.++.++..       ...++.+|..+..    ..-...|.+++
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~-------~~~~~~gd~~~~~~l~~a~i~~a~~vi~   70 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASY-------ATHAVIANATEENELLSLGIRNFEYVIV   70 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTT-------CSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHh-------CCcceeeecccchhhhccCCccccEEEE
Confidence            466677765 43 3334555677 899999999988877532       2456778887643    12245777665

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.77  E-value=0.7  Score=35.63  Aligned_cols=73  Identities=14%  Similarity=0.211  Sum_probs=51.2

Q ss_pred             CCCcEEEEcCCCC---cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      +++++|-.|++.|   ..+..|++.|. +|+.+|.+++.++.+.+.+.    .+..++..|+.+..          ...+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   79 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELG----ERSMFVRHDVSSEADWTLVMAAVQRRLG   79 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHC----TTEEEECCCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC----CCeEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            4678888887776   35666777788 89999999988887766553    24566777876621          1125


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+...
T Consensus        80 ~iDilVnnAG~   90 (253)
T d1hxha_          80 TLNVLVNNAGI   90 (253)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCeEEecccc
Confidence            78998877543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=90.77  E-value=0.79  Score=35.08  Aligned_cols=72  Identities=17%  Similarity=0.147  Sum_probs=51.1

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      +++++|--|++.|.   .+..+++.|. +|+.+|.+++.++.+.+.+..    +...+..|+.+..          ..-+
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGA----NGKGLMLNVTDPASIESVLEKIRAEFG   77 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGG----GEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCC----CCcEEEEEecCHHHhhhhhhhhhcccC
Confidence            46778888877763   5666777888 899999999988887776542    4566778887621          1225


Q ss_pred             ceeEEEecce
Q 025039          125 CFDVVIEKAT  134 (259)
Q Consensus       125 ~fD~V~~~~~  134 (259)
                      ..|+++.+..
T Consensus        78 ~iDilVnnAg   87 (243)
T d1q7ba_          78 EVDILVNNAG   87 (243)
T ss_dssp             SCSEEEECCC
T ss_pred             Ccceehhhhh
Confidence            7999887643

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.52  E-value=0.52  Score=36.45  Aligned_cols=114  Identities=19%  Similarity=0.191  Sum_probs=70.6

Q ss_pred             CCCcEEEEcCCCC---cchHHHHhcCCCeEEE-eeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCC
Q 025039           58 PNSSVLELGCGNS---RLSEGLYNDGITAITC-IDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~  123 (259)
                      .|+++|-.|++.|   ..+..|++.|. +|+. ..-+++.++.+.+.+...+. ++..+..|+.+..          ...
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHHHHHHHHHHHHc
Confidence            4678888887766   56667778888 6765 46778888888888877764 6778888887621          123


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHH--------HHHHHHHHHHhcccCCcEEEEEe
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVT--------KVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +..|+++.+......    +.......+..+        ....+++.+.+.|+.+|..+++.
T Consensus        83 g~idilinnag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~  140 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVW----CDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS  140 (259)
T ss_dssp             SCEEEEECCCCCCCC----CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCcEEEeccccccc----cccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence            578998877544322    100101111111        12235666677777777777654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.45  E-value=0.078  Score=41.47  Aligned_cols=64  Identities=19%  Similarity=0.357  Sum_probs=43.9

Q ss_pred             EEEEcccCCC--cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          110 KVLEADMLDL--PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       110 ~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      .++.+|..+.  .++++++|+|+..+++..-+.+    |....+-.......+.++.++|+|+|.+++..
T Consensus         6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~----~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~   71 (279)
T d1eg2a_           6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLAD----WDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG   71 (279)
T ss_dssp             EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGG----GGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEechHHHHHhhCcCCCccEEEECCCCCCCccc----ccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence            4566776552  3678999999999887533221    11111234566788999999999999999854

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=90.22  E-value=0.48  Score=36.73  Aligned_cols=76  Identities=16%  Similarity=0.200  Sum_probs=57.2

Q ss_pred             CCCcEEEEcCCCC---cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc-----------CCC
Q 025039           58 PNSSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----------FSN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----------~~~  123 (259)
                      +++++|-.|+..|   ..+..+++.|. +|+.++.+++.++.+.+.+...+. .+.++..|+.+..           .-.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~~~~~   82 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVFD   82 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            5788999999876   35667778888 899999999999988888877663 5777888887622           112


Q ss_pred             CceeEEEeccee
Q 025039          124 DCFDVVIEKATM  135 (259)
Q Consensus       124 ~~fD~V~~~~~l  135 (259)
                      +..|+++.+...
T Consensus        83 g~idilinnag~   94 (258)
T d1ae1a_          83 GKLNILVNNAGV   94 (258)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCcEEEeccccc
Confidence            468888876544

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.15  E-value=1.1  Score=34.80  Aligned_cols=114  Identities=13%  Similarity=0.123  Sum_probs=70.6

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCC-HHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLS-AVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~  123 (259)
                      +++++|-.|++.|.   ++..|++.|. +|+.++.+ ++.++.+.+.+...+. ++.+...|+.+..          ...
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~~   94 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKIF   94 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCC-ceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence            57889988888773   6667778888 89999887 6667777776666653 6778888887621          112


Q ss_pred             CceeEEEecceeeeeeeCCCCCCCCCchhHH--------HHHHHHHHHHhcccCCcEEEEEe
Q 025039          124 DCFDVVIEKATMEVLFVNSGDPWNPQPETVT--------KVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       124 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      +..|+++.+.......    .......+...        ....+.+.+.+.|+.+|..+++.
T Consensus        95 g~idilV~nag~~~~~----~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          95 GKLDIVCSNSGVVSFG----HVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             SCCCEEEECCCCCCCC----CGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             CCCCccccccccchhh----hhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence            5689888764432110    00000001111        12235666778888888877764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=90.10  E-value=0.48  Score=36.74  Aligned_cols=75  Identities=23%  Similarity=0.269  Sum_probs=56.7

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      +++.+|-.|++.|.   .+..|++.|. +|+.+|.+++.++.+.+.+...+. ++..+..|+.+..          -.-+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDFG   81 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            57788988887763   5667788888 899999999999999888877663 5777888887621          1125


Q ss_pred             ceeEEEecce
Q 025039          125 CFDVVIEKAT  134 (259)
Q Consensus       125 ~fD~V~~~~~  134 (259)
                      ..|+++.+..
T Consensus        82 ~iDilVnnaG   91 (260)
T d1zema1          82 KIDFLFNNAG   91 (260)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCeehhhhc
Confidence            7899887643

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.95  E-value=0.54  Score=36.05  Aligned_cols=72  Identities=15%  Similarity=0.245  Sum_probs=52.8

Q ss_pred             CCCcEEEEcCCCC---cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc------CCCCceeE
Q 025039           58 PNSSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDCFDV  128 (259)
Q Consensus        58 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~  128 (259)
                      .|+++|-.|++.|   ..+..+++.|. +|+.+|.+++.++.+.+.+     +++..++.|+.+..      ..-+..|+
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~g~iDi   79 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVREC-----PGIEPVCVDLGDWEATERALGSVGPVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHhCCceE
Confidence            5789999998887   36667778888 8999999998887766543     25677788886621      12357899


Q ss_pred             EEeccee
Q 025039          129 VIEKATM  135 (259)
Q Consensus       129 V~~~~~l  135 (259)
                      ++.+...
T Consensus        80 lVnnAg~   86 (244)
T d1pr9a_          80 LVNNAAV   86 (244)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            8876543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=89.79  E-value=0.26  Score=41.07  Aligned_cols=51  Identities=14%  Similarity=0.193  Sum_probs=40.9

Q ss_pred             CCCCCcEEEEcCCCCcchHHHHhc--C-CCeEEEeeCCHHHHHHHHHHHhhcCC
Q 025039           56 IKPNSSVLELGCGNSRLSEGLYND--G-ITAITCIDLSAVAVEKMQERLLLKGY  106 (259)
Q Consensus        56 ~~~~~~vLDiGcG~G~~~~~l~~~--~-~~~v~~vD~s~~~~~~a~~~~~~~~~  106 (259)
                      +.++..++|+||-.|..+..++..  + ..+|+++|+++...+..+++++.+..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            346789999999999888776653  2 23899999999999999998776543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.71  E-value=0.19  Score=37.36  Aligned_cols=99  Identities=13%  Similarity=0.194  Sum_probs=66.0

Q ss_pred             CcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhc-------CCC---------------CeEEEEcc
Q 025039           60 SSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------GYK---------------EVKVLEAD  115 (259)
Q Consensus        60 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~---------------~v~~~~~d  115 (259)
                      .+|.-+|+|+ | ..+..++..|. +|+.+|.+++.++.+++++...       +..               ++.. ..|
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~-~~d   82 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-STD   82 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-ESC
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc-cch
Confidence            4789999998 4 45666777788 9999999999999888765421       110               1111 111


Q ss_pred             cCCCcCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          116 MLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       116 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      ..+   .-...|+|+-.-                +++.+..+++++++.+.++++.++.-.+.+
T Consensus        83 ~~~---a~~~ad~ViEav----------------~E~l~~K~~v~~~l~~~~~~~~ilasnTS~  127 (192)
T d1f0ya2          83 AAS---VVHSTDLVVEAI----------------VENLKVKNELFKRLDKFAAEHTIFASNTSS  127 (192)
T ss_dssp             HHH---HTTSCSEEEECC----------------CSCHHHHHHHHHHHTTTSCTTCEEEECCSS
T ss_pred             hHh---hhcccceehhhc----------------ccchhHHHHHHHHHhhhcccCceeeccCcc
Confidence            111   013467776422                256678889999999999999888765543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=89.24  E-value=1.1  Score=34.43  Aligned_cols=70  Identities=17%  Similarity=0.269  Sum_probs=48.5

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      +|+++|--|++.|.   .+..|++.|. +|+.+|.+++..+.+++.       +..++..|+.+..          ..-+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~~G   75 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAI-------GGAFFQVDLEDERERVRFVEEAAYALG   75 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHH-------TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-------CCeEEEEeCCCHHHHHHHHHHHHHhcC
Confidence            57889999987763   5667777888 899999998876655442       2456677887621          1125


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+...
T Consensus        76 ~iDiLVnnAG~   86 (248)
T d2d1ya1          76 RVDVLVNNAAI   86 (248)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCeEEEeCcC
Confidence            78998876543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=88.98  E-value=0.59  Score=36.34  Aligned_cols=74  Identities=8%  Similarity=0.094  Sum_probs=54.2

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      +++.+|-.|++.|.   .+..|++.|. +|+.+|.+++.++.+.+.+...+  .+.++..|+.+..          ...+
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPD--VISFVHCDVTKDEDVRNLVDTTIAKHG   81 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTT--TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCC--ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            57889999988763   4556677788 89999999999888887775433  4777888887621          1125


Q ss_pred             ceeEEEecce
Q 025039          125 CFDVVIEKAT  134 (259)
Q Consensus       125 ~fD~V~~~~~  134 (259)
                      ..|+++.+..
T Consensus        82 ~iD~lVnnAG   91 (268)
T d2bgka1          82 KLDIMFGNVG   91 (268)
T ss_dssp             CCCEEEECCC
T ss_pred             Ccceeccccc
Confidence            7899887644

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=88.94  E-value=0.58  Score=34.11  Aligned_cols=93  Identities=13%  Similarity=0.174  Sum_probs=58.1

Q ss_pred             CCCcEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCC--CcCCCCceeEEEecc
Q 025039           58 PNSSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--LPFSNDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~V~~~~  133 (259)
                      ++..||-.|+..  |..++.+++....+|+++.-+++..+.+++.    |.  ..++.-+-.+  ..+....+|.|+.  
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l----Ga--d~vi~~~~~~~~~~l~~~~~~~vvD--  102 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL----GA--SRVLPRDEFAESRPLEKQVWAGAID--  102 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TE--EEEEEGGGSSSCCSSCCCCEEEEEE--
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh----cc--ccccccccHHHHHHHHhhcCCeeEE--
Confidence            345788766532  6677777766333899999998887777654    32  2223322111  1233456787653  


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                         .+.                 ...+....+.|+++|.++.+..
T Consensus       103 ---~Vg-----------------g~~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         103 ---TVG-----------------DKVLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             ---SSC-----------------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             ---Ecc-----------------hHHHHHHHHHhccccceEeecc
Confidence               220                 2468899999999999998754

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.32  E-value=0.6  Score=36.38  Aligned_cols=76  Identities=21%  Similarity=0.252  Sum_probs=56.3

Q ss_pred             CCCcEEEEcCCCC---cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEcccCCCc----------CC
Q 025039           58 PNSSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDLP----------FS  122 (259)
Q Consensus        58 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~----------~~  122 (259)
                      +++++|-.|++.|   ..+..|++.|. +|+.+|.+++.++.+.+.+...+..  ++..+..|+.+..          ..
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            4678888888776   35667777888 8999999999999998888766543  3778888887622          11


Q ss_pred             CCceeEEEecce
Q 025039          123 NDCFDVVIEKAT  134 (259)
Q Consensus       123 ~~~fD~V~~~~~  134 (259)
                      .+..|+++.+..
T Consensus        83 ~g~iDilvnnAG   94 (272)
T d1xkqa_          83 FGKIDVLVNNAG   94 (272)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCceEEEeCCc
Confidence            256899887643

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=88.28  E-value=0.56  Score=36.85  Aligned_cols=77  Identities=14%  Similarity=0.123  Sum_probs=54.4

Q ss_pred             CCCcEEEEcCCCC---cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      +++++|-.|++.|   ..+..|++.|. +|+.+|.++..++.+.+.+....-..+.++..|+.+..          ...+
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhcc
Confidence            5788999998876   46667777888 99999999988877766554332235777788886622          1235


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+...
T Consensus       103 ~iDilvnnAg~  113 (294)
T d1w6ua_         103 HPNIVINNAAG  113 (294)
T ss_dssp             SCSEEEECCCC
T ss_pred             ccchhhhhhhh
Confidence            78988876543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=87.98  E-value=0.78  Score=35.46  Aligned_cols=76  Identities=13%  Similarity=0.159  Sum_probs=56.3

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CC-C
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FS-N  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~-~  123 (259)
                      +++++|-.|++.|.   .+..|++.|. +|+.+|.+++.++.+.+.+...+ .++.+...|+.+..          .. .
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   84 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG-FKVEASVCDLSSRSERQELMNTVANHFH   84 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            57889988988763   5667777888 89999999999998888877665 35677788887621          11 2


Q ss_pred             CceeEEEeccee
Q 025039          124 DCFDVVIEKATM  135 (259)
Q Consensus       124 ~~fD~V~~~~~l  135 (259)
                      ...|+++.+...
T Consensus        85 ~~idilvnnAG~   96 (259)
T d2ae2a_          85 GKLNILVNNAGI   96 (259)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCceEEEECCce
Confidence            368998876543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.75  E-value=0.64  Score=35.92  Aligned_cols=76  Identities=13%  Similarity=0.173  Sum_probs=55.6

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      +++++|--|++.|.   .+..+++.|. +|+.+|.+++.++.+.+.+...+. ++..+..|+.+..          ..-+
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~-~~~~~~~Dvs~~~~~~~~~~~~~~~~g   87 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLG   87 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            57788888877653   4556677788 899999999999998888877663 5777888987622          1125


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+...
T Consensus        88 ~iDilvnnAG~   98 (255)
T d1fmca_          88 KVDILVNNAGG   98 (255)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEeeeCCcC
Confidence            79998877543

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.57  E-value=0.98  Score=34.59  Aligned_cols=74  Identities=14%  Similarity=0.115  Sum_probs=50.3

Q ss_pred             CCCcEEEEcCCC--C--c-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CC
Q 025039           58 PNSSVLELGCGN--S--R-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FS  122 (259)
Q Consensus        58 ~~~~vLDiGcG~--G--~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~  122 (259)
                      +++++|-.|++.  |  . .+..|++.|. +|+..+.++...+.+.+.....+  ...++..|+.+..          ..
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~   83 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKEA   83 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccC--cccccccccCCHHHHHHHHHHHHHh
Confidence            578899999754  3  2 6667778888 89999999877777666554433  4566778876621          11


Q ss_pred             CCceeEEEecce
Q 025039          123 NDCFDVVIEKAT  134 (259)
Q Consensus       123 ~~~fD~V~~~~~  134 (259)
                      .+..|+++.+..
T Consensus        84 ~g~iDilVnnag   95 (256)
T d1ulua_          84 FGGLDYLVHAIA   95 (256)
T ss_dssp             HSSEEEEEECCC
T ss_pred             cCCceEEEeccc
Confidence            257898886543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.33  E-value=0.74  Score=35.88  Aligned_cols=76  Identities=17%  Similarity=0.260  Sum_probs=56.8

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEcccCCCc----------CC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDLP----------FS  122 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~----------~~  122 (259)
                      +++++|--|++.|.   .+..|++.|. +|+.+|.+++.++.+.+.+...+.+  ++..+..|+.+..          ..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            47788888888763   5667777888 8999999999999988888776643  4778888987632          11


Q ss_pred             CCceeEEEecce
Q 025039          123 NDCFDVVIEKAT  134 (259)
Q Consensus       123 ~~~fD~V~~~~~  134 (259)
                      -+..|+++.+..
T Consensus        82 ~G~iDilVnnAG   93 (274)
T d1xhla_          82 FGKIDILVNNAG   93 (274)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCceEEEeecc
Confidence            257899887643

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.14  E-value=1.8  Score=34.70  Aligned_cols=106  Identities=20%  Similarity=0.215  Sum_probs=65.1

Q ss_pred             CCCcEEEEcCCCCcchHHHHhcCCC-eEEEeeCCHHHHHHHHHHHhhc---------------------CCCCeEEEEcc
Q 025039           58 PNSSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLK---------------------GYKEVKVLEAD  115 (259)
Q Consensus        58 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~---------------------~~~~v~~~~~d  115 (259)
                      +...|+-+|||.=.....+.+..++ .++=+|+ |++++.=++.+...                     .-++...+..|
T Consensus        96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D  174 (328)
T d1rjda_          96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  174 (328)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence            4568999999998777777665553 4445554 44444333332211                     01235666777


Q ss_pred             cCCCc---------CCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEec
Q 025039          116 MLDLP---------FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       116 ~~~~~---------~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  178 (259)
                      +.+..         +.....-++++-+++.++             ..+...++++.+.+... +|.+++.+.
T Consensus       175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl-------------~~~~~~~li~~~~~~f~-~~~~i~YE~  232 (328)
T d1rjda_         175 LNDITETTRLLDVCTKREIPTIVISECLLCYM-------------HNNESQLLINTIMSKFS-HGLWISYDP  232 (328)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-------------CHHHHHHHHHHHHHHCS-SEEEEEEEE
T ss_pred             CCCcHhhHHHHHccCCCCCCeEEEEeeehhcC-------------CHHHHHHHHHHHHHhCC-CceEEEecc
Confidence            76632         122234467777888877             55778889998888775 566666554

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.56  E-value=0.87  Score=35.20  Aligned_cols=76  Identities=17%  Similarity=0.209  Sum_probs=55.5

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC--CeEEEEcccCCCc----------CC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDLP----------FS  122 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~----------~~  122 (259)
                      +++.+|-.|++.|.   .+..|++.|. +|+.+|.+++.++.+.+.+...+..  ++.++..|+.+..          ..
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            46778888887763   5566777888 8999999999999888887766543  3788888987622          11


Q ss_pred             CCceeEEEecce
Q 025039          123 NDCFDVVIEKAT  134 (259)
Q Consensus       123 ~~~fD~V~~~~~  134 (259)
                      -+..|+++.+..
T Consensus        83 ~g~iDilvnnAG   94 (264)
T d1spxa_          83 FGKLDILVNNAG   94 (264)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCCCEeecccc
Confidence            257898887643

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=86.52  E-value=1.2  Score=34.20  Aligned_cols=75  Identities=16%  Similarity=0.191  Sum_probs=54.5

Q ss_pred             CCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCCc
Q 025039           59 NSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC  125 (259)
Q Consensus        59 ~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~~  125 (259)
                      ++.+|--|++.|.   .+..|++.|. +|+.+|.+++.++.+.+.+...+. ++..+..|+.+..          ..-+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            4556777877653   5566777888 899999999999998888877663 6778888987632          12257


Q ss_pred             eeEEEeccee
Q 025039          126 FDVVIEKATM  135 (259)
Q Consensus       126 fD~V~~~~~l  135 (259)
                      .|+++.+...
T Consensus        80 iDilVnnAG~   89 (257)
T d2rhca1          80 VDVLVNNAGR   89 (257)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEecccc
Confidence            8998876443

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=86.27  E-value=1.2  Score=34.33  Aligned_cols=76  Identities=22%  Similarity=0.216  Sum_probs=55.8

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCC-CeEEEEcccCCCc----------CCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLP----------FSN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~----------~~~  123 (259)
                      +++++|--|++.|.   .+..|++.|. +|+.+|.+++.++.+.+.+...+.. ++..+..|+.+..          ..-
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            46788888988874   6777888898 8999999999988887766554432 4677888887632          112


Q ss_pred             CceeEEEecce
Q 025039          124 DCFDVVIEKAT  134 (259)
Q Consensus       124 ~~fD~V~~~~~  134 (259)
                      +..|+++.+..
T Consensus        82 G~iDiLVnnAG   92 (258)
T d1iy8a_          82 GRIDGFFNNAG   92 (258)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            57899887754

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.27  E-value=1.3  Score=33.81  Aligned_cols=71  Identities=13%  Similarity=0.179  Sum_probs=50.8

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc------CCCCceeE
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDCFDV  128 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~  128 (259)
                      .|+++|-.|++.|.   .+..+++.|. +|+.+|.+++.++.+.+.+     .++..+..|+.+..      ..-+..|+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~g~iDi   77 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC-----PGIEPVCVDLGDWDATEKALGGIGPVDL   77 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHcCCCeE
Confidence            57889988988763   5666777888 8999999988777666543     25677788887632      12357899


Q ss_pred             EEecce
Q 025039          129 VIEKAT  134 (259)
Q Consensus       129 V~~~~~  134 (259)
                      ++.+..
T Consensus        78 lVnnAg   83 (242)
T d1cyda_          78 LVNNAA   83 (242)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            887643

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.19  E-value=0.94  Score=34.96  Aligned_cols=76  Identities=18%  Similarity=0.180  Sum_probs=56.8

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc---------CC--C
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---------FS--N  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---------~~--~  123 (259)
                      +++++|-.|++.|.   .+..+++.|. +|+.+|.+++.++.+.+.+...+. ++.....|+.+..         ..  .
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~~   84 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMFG   84 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-ceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            57889998988764   6667777888 899999999999988887776553 6788888887521         11  2


Q ss_pred             CceeEEEeccee
Q 025039          124 DCFDVVIEKATM  135 (259)
Q Consensus       124 ~~fD~V~~~~~l  135 (259)
                      +..|+++.+...
T Consensus        85 g~idilvnnAG~   96 (259)
T d1xq1a_          85 GKLDILINNLGA   96 (259)
T ss_dssp             TCCSEEEEECCC
T ss_pred             CCcccccccccc
Confidence            568999877443

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.81  E-value=0.99  Score=34.65  Aligned_cols=76  Identities=16%  Similarity=0.220  Sum_probs=53.9

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHh-hcCCCCeEEEEcccCCCc----------CCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLL-LKGYKEVKVLEADMLDLP----------FSN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~~----------~~~  123 (259)
                      +++++|--|++.|.   .+..|++.|. +|+.+|.+++.++.+.+.+. ..+ .++..+..|+.+..          ..-
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYG-VETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            47789999988763   5667778888 89999999888777665543 334 35777788887622          112


Q ss_pred             CceeEEEeccee
Q 025039          124 DCFDVVIEKATM  135 (259)
Q Consensus       124 ~~fD~V~~~~~l  135 (259)
                      +..|+++.+..+
T Consensus        82 g~iDiLVnnAG~   93 (251)
T d1vl8a_          82 GKLDTVVNAAGI   93 (251)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            579999877543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=85.72  E-value=0.12  Score=36.97  Aligned_cols=97  Identities=13%  Similarity=0.072  Sum_probs=54.8

Q ss_pred             CcEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeee
Q 025039           60 SSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV  137 (259)
Q Consensus        60 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  137 (259)
                      .+|+-+|+|. | .++..|++.|. +|+.++.++...+.    ....+.........-....+.....+|+|+..-    
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~v----   71 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCS----VNLVETDGSIFNESLTANDPDFLATSDLLLVTL----   71 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEE----EEEECTTSCEEEEEEEESCHHHHHTCSEEEECS----
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhh----hccccCCccccccccccchhhhhcccceEEEee----
Confidence            4789999997 4 56667777888 89999877531111    000111110000000001111124688888532    


Q ss_pred             eeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          138 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                                    ...+...+++.+...+.++..++...-+
T Consensus        72 --------------ka~~~~~~~~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          72 --------------KAWQVSDAVKSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             --------------CGGGHHHHHHHHHTTSCTTSCEEEECSS
T ss_pred             --------------cccchHHHHHhhccccCcccEEeeccCc
Confidence                          1135568899999999999988876443

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=85.68  E-value=0.22  Score=38.11  Aligned_cols=66  Identities=14%  Similarity=0.236  Sum_probs=41.0

Q ss_pred             EEEEcccCCC--cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          110 KVLEADMLDL--PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       110 ~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      .+.++|..++  .++++++|+|+..+++..-... ...+....+-.......++++.++|+|||.+++.
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~-~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~   73 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKAD-WDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSG-GGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCc-CcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence            3567777652  3568899999998886421100 0011111111234567888999999999998864

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=85.07  E-value=0.72  Score=29.97  Aligned_cols=69  Identities=17%  Similarity=0.317  Sum_probs=41.1

Q ss_pred             CCCCCcEEEEcCC-CC--cchHHHHhcCCCeEEEeeCCHH-HHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEe
Q 025039           56 IKPNSSVLELGCG-NS--RLSEGLYNDGITAITCIDLSAV-AVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIE  131 (259)
Q Consensus        56 ~~~~~~vLDiGcG-~G--~~~~~l~~~~~~~v~~vD~s~~-~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  131 (259)
                      +....+|.=+|.| +|  .++..|.++|. +|+|.|.... ..+..    ...|   +.+..+.... ..  ...|+|+.
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L----~~~G---i~v~~g~~~~-~i--~~~d~vV~   73 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRL----AQAG---AKIYIGHAEE-HI--EGASVVVV   73 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHH----HHTT---CEEEESCCGG-GG--TTCSEEEE
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHH----HHCC---CeEEECCccc-cC--CCCCEEEE
Confidence            3456778888754 45  45677788899 9999998632 22222    2333   4555443322 12  35788886


Q ss_pred             ccee
Q 025039          132 KATM  135 (259)
Q Consensus       132 ~~~l  135 (259)
                      +..+
T Consensus        74 S~AI   77 (96)
T d1p3da1          74 SSAI   77 (96)
T ss_dssp             CTTS
T ss_pred             CCCc
Confidence            6544

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.96  E-value=1.1  Score=34.69  Aligned_cols=77  Identities=16%  Similarity=0.160  Sum_probs=54.6

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      +|+++|-.|++.|.   ++..+++.|. +|+.++.+++.++.+.+.+.......+.....|..+..          ...+
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   91 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG   91 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence            57889999998873   6667777888 99999999999998877655444334666666665421          1124


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+...
T Consensus        92 ~~~~li~nag~  102 (269)
T d1xu9a_          92 GLDMLILNHIT  102 (269)
T ss_dssp             SCSEEEECCCC
T ss_pred             Ccccccccccc
Confidence            67888876544

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.89  E-value=1.5  Score=33.61  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=54.5

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCC-CCeEEEEcccCCCc----------CCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP----------FSN  123 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~----------~~~  123 (259)
                      .|+.+|--|++.|.   .+..+++.|. +|+.+|.+++.++.+.+.+....- .++.++..|+.+..          ..-
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            36788888887763   5566677788 899999999988888777654321 24777888987632          112


Q ss_pred             CceeEEEeccee
Q 025039          124 DCFDVVIEKATM  135 (259)
Q Consensus       124 ~~fD~V~~~~~l  135 (259)
                      +..|+++.+...
T Consensus        81 G~iDilVnnAg~   92 (254)
T d2gdza1          81 GRLDILVNNAGV   92 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCcCeecccccc
Confidence            578998876543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=84.85  E-value=0.58  Score=34.34  Aligned_cols=74  Identities=11%  Similarity=0.026  Sum_probs=50.9

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCC---cCCCCceeEEEe
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL---PFSNDCFDVVIE  131 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~V~~  131 (259)
                      ++++||-.|++.|.   .+..+++.|. +|+.++.+++.++.+.+.+....  .+.+...|..+.   ...-+..|+++.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~iDilin   98 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF--KVNVTAAETADDASRAEAVKGAHFVFT   98 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH--TCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc--chhhhhhhcccHHHHHHHhcCcCeeee
Confidence            68899999987753   5667777887 89999999988888877665432  334445555442   111246899987


Q ss_pred             cce
Q 025039          132 KAT  134 (259)
Q Consensus       132 ~~~  134 (259)
                      +..
T Consensus        99 ~Ag  101 (191)
T d1luaa1          99 AGA  101 (191)
T ss_dssp             CCC
T ss_pred             cCc
Confidence            644

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=84.19  E-value=0.35  Score=38.17  Aligned_cols=68  Identities=22%  Similarity=0.281  Sum_probs=43.7

Q ss_pred             eEEEEcccCC-C-cCCCCceeEEEecceeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          109 VKVLEADMLD-L-PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       109 v~~~~~d~~~-~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                      -.++++|..+ + .++++++|+|+..+++.... +....+....+-.......+..+.++|+|+|.+++..
T Consensus        13 ~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~-~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~   82 (320)
T d1booa_          13 GSMYIGDSLELLESFPEESISLVMTSPPFALQR-KKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF   82 (320)
T ss_dssp             EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSC-SCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEehhHHHHHhhCccCCCCEEEECCCCcCCC-CCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccc
Confidence            4778888765 2 26788999999988874221 0000010001122346678999999999999999864

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.13  E-value=1.4  Score=33.64  Aligned_cols=73  Identities=12%  Similarity=0.159  Sum_probs=52.9

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      +++++|--|++.|.   .+..+++.|. +|+.+|.+++.++.+.+.+.    .++.++..|+.+..          ...+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   79 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA----DAARYVHLDVTQPAQWKAAVDTAVTAFG   79 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG----GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh----CcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            57788888988763   6667778888 89999999988887776653    24677888887622          1125


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+...
T Consensus        80 ~idilinnAG~   90 (244)
T d1nffa_          80 GLHVLVNNAGI   90 (244)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCeEEEECCcc
Confidence            68998876543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=84.06  E-value=1.2  Score=34.11  Aligned_cols=75  Identities=9%  Similarity=0.089  Sum_probs=54.0

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      +++++|-.|++.|.   .+..|++.|. +|+.+|.+++.++.+.+.+...  .++.++..|+.+..          ...+
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCC--CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46788888877753   5566777888 8999999999888888776532  25788889987632          1125


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+...
T Consensus        82 ~iDiLVnnAg~   92 (251)
T d1zk4a1          82 PVSTLVNNAGI   92 (251)
T ss_dssp             SCCEEEECCCC
T ss_pred             CceEEEecccc
Confidence            78998876543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=83.40  E-value=1.9  Score=32.94  Aligned_cols=72  Identities=21%  Similarity=0.326  Sum_probs=52.2

Q ss_pred             EEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCCceeE
Q 025039           62 VLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDCFDV  128 (259)
Q Consensus        62 vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~~fD~  128 (259)
                      +|--|++.|.   .+..+++.|. +|+.+|.+++.++.+.+.+...+. ++..+..|+.+..          ..-+..|+
T Consensus         4 alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             EEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            4667777653   5556677788 899999999999988888877663 6777888987622          12257999


Q ss_pred             EEeccee
Q 025039          129 VIEKATM  135 (259)
Q Consensus       129 V~~~~~l  135 (259)
                      ++.+..+
T Consensus        82 lVnnAG~   88 (255)
T d1gega_          82 IVNNAGV   88 (255)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            8876443

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=82.80  E-value=0.76  Score=33.17  Aligned_cols=96  Identities=10%  Similarity=0.081  Sum_probs=56.5

Q ss_pred             cEEEEcCCC--CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeee
Q 025039           61 SVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL  138 (259)
Q Consensus        61 ~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~  138 (259)
                      .|-=||+|.  +.++..|++.|+ +|++.|.+++.++...+.-....  ... ......++...-...|.++..-+    
T Consensus         4 nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~--~~~-~a~~~~~~~~~~~~~~~ii~~~~----   75 (176)
T d2pgda2           4 DIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAKGT--KVL-GAHSLEEMVSKLKKPRRIILLVK----   75 (176)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTTTS--SCE-ECSSHHHHHHHBCSSCEEEECSC----
T ss_pred             cEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhccccc--ccc-chhhhhhhhhhhcccceEEEecC----
Confidence            466688887  457777888888 89999999988887765422111  111 11111111101123456553211    


Q ss_pred             eeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEe
Q 025039          139 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  177 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  177 (259)
                                   ..+....++..+...+++|-+++-.+
T Consensus        76 -------------~~~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          76 -------------AGQAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             -------------TTHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             -------------chHHHHHHHHHHHhccccCcEEEecC
Confidence                         23556677888999999888766543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=82.55  E-value=4.5  Score=27.85  Aligned_cols=98  Identities=14%  Similarity=0.023  Sum_probs=56.4

Q ss_pred             CcEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----CCCCceeEEEecc
Q 025039           60 SSVLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEKA  133 (259)
Q Consensus        60 ~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~~  133 (259)
                      .+|+-+|+|. |. ++..|.+.+. .++.+|.+++......+....   ..+.++.+|..+..    ..-+..|.|++..
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~---~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~   79 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG---DNADVIPGDSNDSSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC---TTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhc---CCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence            4688888875 33 3334445566 899999998654433333322   25788999987732    2234678877532


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEEecC
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  179 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  179 (259)
                      .                 + +.....+-...+-+.|...++.....
T Consensus        80 ~-----------------~-d~~n~~~~~~~r~~~~~~~iia~~~~  107 (153)
T d1id1a_          80 D-----------------N-DADNAFVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             S-----------------C-HHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred             c-----------------c-HHHHHHHHHHHHHhCCCCceEEEEcC
Confidence            1                 1 12222333445566777777765433

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.03  E-value=0.73  Score=34.14  Aligned_cols=38  Identities=16%  Similarity=0.292  Sum_probs=29.9

Q ss_pred             cEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHH
Q 025039           61 SVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQE   99 (259)
Q Consensus        61 ~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~   99 (259)
                      +|.-+|+|. | .++..+++.|. +|+|+|.+++.++...+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcc
Confidence            577889987 4 45667777888 89999999988877653

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.87  E-value=1.9  Score=32.96  Aligned_cols=71  Identities=15%  Similarity=0.203  Sum_probs=51.9

Q ss_pred             CCCcEEEEcCCCCc---chHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      +++++|-.|++.|.   .+..|++.|. +|+.+|.+++.++.+.+..     +++.++..|+.+..          ..-+
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~-----~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL-----PGAVFILCDVTQEDDVKTLVSETIRRFG   78 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEccCCCHHHHHHHHHHHHHhcC
Confidence            57889999988763   5666777888 8999999998887776553     35677888887622          1125


Q ss_pred             ceeEEEecce
Q 025039          125 CFDVVIEKAT  134 (259)
Q Consensus       125 ~fD~V~~~~~  134 (259)
                      ..|+++.+..
T Consensus        79 ~iDilVnnAG   88 (250)
T d1ydea1          79 RLDCVVNNAG   88 (250)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEeccc
Confidence            7899887654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=81.58  E-value=4.3  Score=28.86  Aligned_cols=74  Identities=22%  Similarity=0.343  Sum_probs=48.1

Q ss_pred             CCCCcEEEEcCCC-CcchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEeccee
Q 025039           57 KPNSSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM  135 (259)
Q Consensus        57 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  135 (259)
                      .++.+||-+|||. +....+.+..+..+++.+.-+.+..+...+++....  ++.....+.  ..  ...+|+|+..-++
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~--~~~~~~~~~--~~--~~~~diiIN~tp~   89 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQAVSMDS--IP--LQTYDLVINATSA   89 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEEEEEGGG--CC--CSCCSEEEECCCC
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc--ccchhhhcc--cc--ccccceeeecccc
Confidence            4678999999987 444443333444599999999988888877776432  344444332  22  3579999976554


Q ss_pred             e
Q 025039          136 E  136 (259)
Q Consensus       136 ~  136 (259)
                      .
T Consensus        90 g   90 (171)
T d1p77a1          90 G   90 (171)
T ss_dssp             -
T ss_pred             c
Confidence            3

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.13  E-value=1.3  Score=31.36  Aligned_cols=89  Identities=20%  Similarity=0.297  Sum_probs=54.2

Q ss_pred             cEEEEcCCC-C-cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecceeeee
Q 025039           61 SVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL  138 (259)
Q Consensus        61 ~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~  138 (259)
                      +|-=+|+|. | .++..|++.|+ +|++.|.+++.++.+.+.    +   ... ..+..+.   ....|+|+..-+    
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~----~---~~~-~~~~~e~---~~~~d~ii~~v~----   65 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAA----G---AET-ASTAKAI---AEQCDVIITMLP----   65 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----T---CEE-CSSHHHH---HHHCSEEEECCS----
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHh----h---hhh-cccHHHH---HhCCCeEEEEcC----
Confidence            466688887 3 46667788888 899999999888777653    1   221 2222221   134688775311    


Q ss_pred             eeCCCCCCCCCchhHHHHHHHH---HHHHhcccCCcEEEEEec
Q 025039          139 FVNSGDPWNPQPETVTKVMAML---EGVHRVLKPDGLFISVSF  178 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l---~~~~~~LkpgG~l~~~~~  178 (259)
                                   +......++   ..+...++||..++-.+-
T Consensus        66 -------------~~~~v~~v~~~~~~~~~~~~~g~iiid~sT   95 (161)
T d1vpda2          66 -------------NSPHVKEVALGENGIIEGAKPGTVLIDMSS   95 (161)
T ss_dssp             -------------SHHHHHHHHHSTTCHHHHCCTTCEEEECSC
T ss_pred             -------------CHHHHHHHHhCCcchhhccCCCCEEEECCC
Confidence                         224444554   457778888777665433

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=81.10  E-value=4.4  Score=30.55  Aligned_cols=73  Identities=19%  Similarity=0.186  Sum_probs=47.0

Q ss_pred             cEEEEcCCCCc---chHHHHhcCCCeEEEeeC-CHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCCce
Q 025039           61 SVLELGCGNSR---LSEGLYNDGITAITCIDL-SAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDCF  126 (259)
Q Consensus        61 ~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~~f  126 (259)
                      .||--|++.|.   .+..|++.|. +|+..+. +++.++.+.+.++..+. ++.++..|+.+..          ..-+..
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTC-EEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            34555555542   4445666787 7877765 67778888777776653 5777888887632          122579


Q ss_pred             eEEEeccee
Q 025039          127 DVVIEKATM  135 (259)
Q Consensus       127 D~V~~~~~l  135 (259)
                      |+++.+...
T Consensus        81 DiLVnnAg~   89 (244)
T d1edoa_          81 DVVVNNAGI   89 (244)
T ss_dssp             SEEEECCCC
T ss_pred             Ccccccccc
Confidence            998876543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=80.46  E-value=2  Score=32.89  Aligned_cols=73  Identities=12%  Similarity=0.118  Sum_probs=52.0

Q ss_pred             CCCcEEEEcCCCC---cchHHHHhcCCCeEEEeeCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCc----------CCCC
Q 025039           58 PNSSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND  124 (259)
Q Consensus        58 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  124 (259)
                      +++++|-.|++.|   ..+..+++.|. +|+.+|.+++.++...+.+   + ..+.+...|+.+..          ...+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---G-DAARYQHLDVTIEEDWQRVVAYAREEFG   78 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---G-GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C-CceEEEEcccCCHHHHHHHHHHHHHHcC
Confidence            4778999998887   35667777888 8999999998777665543   2 25778888987622          1125


Q ss_pred             ceeEEEeccee
Q 025039          125 CFDVVIEKATM  135 (259)
Q Consensus       125 ~fD~V~~~~~l  135 (259)
                      ..|+++.+...
T Consensus        79 ~iDilVnnAg~   89 (254)
T d1hdca_          79 SVDGLVNNAGI   89 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CccEEEecCcc
Confidence            78988876443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.28  E-value=1.9  Score=28.40  Aligned_cols=88  Identities=16%  Similarity=0.171  Sum_probs=51.1

Q ss_pred             CCCcEEEEcCCC-C-cchHHHHhcCCCeEEEe--eCCHHHHHHHHHHHhhcCCCCeEEEEcccCCCcCCCCceeEEEecc
Q 025039           58 PNSSVLELGCGN-S-RLSEGLYNDGITAITCI--DLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA  133 (259)
Q Consensus        58 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  133 (259)
                      .+.+||-+|+|. | .-+..+.+.|. +++.+  +.+++....+.+       ..+++.......-.+  ..+++|+...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~dl--~~~~lv~~at   80 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIPQFTVWANE-------GMLTLVEGPFDETLL--DSCWLAIAAT   80 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCHHHHHHHTT-------TSCEEEESSCCGGGG--TTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCChHHHHHHhc-------CCceeeccCCCHHHh--CCCcEEeecC
Confidence            578999999998 3 34455666677 55555  455544433321       257777765544333  3577777532


Q ss_pred             eeeeeeeCCCCCCCCCchhHHHHHHHHHHHHhcccCCcEEEEE
Q 025039          134 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  176 (259)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  176 (259)
                      .-                     ..+-.++.+..++.|+++=+
T Consensus        81 ~d---------------------~~~n~~i~~~a~~~~ilVNv  102 (113)
T d1pjqa1          81 DD---------------------DTVNQRVSDAAESRRIFCNV  102 (113)
T ss_dssp             SC---------------------HHHHHHHHHHHHHTTCEEEE
T ss_pred             CC---------------------HHHHHHHHHHHHHcCCEEEe
Confidence            11                     13334566666777887643

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=80.12  E-value=2.9  Score=28.97  Aligned_cols=40  Identities=28%  Similarity=0.367  Sum_probs=29.7

Q ss_pred             cEEEEcCCC-Cc-chHHHHhcCCCeEEEeeCCHHHHHHHHHH
Q 025039           61 SVLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQER  100 (259)
Q Consensus        61 ~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~  100 (259)
                      +|.=+|||. |. ++..|.+.+..++++.|.+++.++...+.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~   43 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE   43 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh
Confidence            567789987 44 44556667755999999999888776654