Citrus Sinensis ID: 025041

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MTHACSFTLSKALNFGALFVRRSKFHLNCLPKCSCTPFRMESSSSLRIGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWSC
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHcccEEEEcccccHHHHHHccccccHHHHHHHHcccccccEEEEEEccHHHHHHHccccccccccHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEHHHHHHHHHEEcccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHHHcccEEEEEccHHHHHHHHHcccccHHHHHHHHcccEEccEEEEEEccHHHHHccccccccccccHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MTHACSFTLSKALNFGALFVRRskfhlnclpkcsctpfrmesssslrignidsrGALVVLEgldrcgktsqcSRLLSYLEGLghsvelwrfpdrttsVGQMISAYLsnqshlddhtIHLLFSANRWEKRSMMEAKLKAGTTLivdrysysgvafssakgidiewckapeigllapdsvlyldippekaaerggyggeryeHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVtackkgkpfsllwsc
Flexible Loop (DISEMBL)
MTHACSFTLSKALNFGALFVRRSKFHLNCLPKCSCTPFRMESSSSLRIGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSnqshlddhTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDqvtackkgkpfsllwsc
Low Complexity Region (SEG)
MTHACSFTLSKALNFGALFVRRSKFHLNCLPKCSCTPFRMESSSSLRIGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAerggyggeryeHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWSC
Disordered region (IsUnstruct)
****CSFTLSKALNFGALFVRRSKFHLNCLPKCSCT***************DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLW**
Disordered Region (DISOPRED)
****CSFTLSKALNFGALFVRRSKFHL*****************************LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAA*RG***G*RYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWS*
Disordered Region (DISEMBL)
MTHACSFTLSKALNFGALFVRRSKFHLNCLPKCSCTPFRMESSSSLRIGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWSC
Disordered Region (DISPRO)
MTHACSFTLSKALNFGALFVRRSKFHLNCL**********************SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWSC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTHACSFTLSKALNFGALFVRRSKFHLNCLPKCSCTPFRMESSSSLRIGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
P23919	212	Thymidylate kinase OS=Hom	yes	no	0.783	0.957	0.456	3e-52
Q54GN2	222	Thymidylate kinase OS=Dic	yes	no	0.718	0.837	0.489	6e-51
P97930	212	Thymidylate kinase OS=Mus	yes	no	0.783	0.957	0.456	5e-50
P36590	210	Thymidylate kinase OS=Sch	yes	no	0.725	0.895	0.479	6e-48
Q91FS1	213	Putative thymidylate kina	N/A	no	0.733	0.892	0.439	4e-45
Q22018	218	Probable thymidylate kina	yes	no	0.768	0.912	0.408	2e-41
P00572	216	Thymidylate kinase OS=Sac	yes	no	0.706	0.847	0.437	5e-39
Q8QQ21	204	Thymidylate kinase OS=Cam	N/A	no	0.764	0.970	0.406	6e-37
Q8V2K9	204	Thymidylate kinase OS=Cam	N/A	no	0.764	0.970	0.406	6e-37
Q80DS7	204	Thymidylate kinase OS=Cow	N/A	no	0.764	0.970	0.416	2e-36

>sp|P23919|KTHY_HUMAN Thymidylate kinase OS=Homo sapiens GN=DTYMK PE=1 SV=4

 Score =  205 bits (521), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 95/208 (45%), Positives = 147/208 (70%), Gaps = 5/208 (2%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
           RGAL+VLEG+DR GK++Q  +L+  L   GH  EL RFP+R+T +G+++S+YL  +S ++
Sbjct: 5   RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 64

Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
           DH++HLLFSANRWE+  +++ KL  G TL+VDRY++SGVAF+ AK    ++WCK P++GL
Sbjct: 65  DHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGL 124

Query: 173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY-QMLRDSS--WKIIDACQSI 229
             PD VL+L +    AA+RG +G ERYE+  FQ +  +C+ Q+++D++  WK++DA +SI
Sbjct: 125 PKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSI 184

Query: 230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
           E V + ++ +  D +    + KP   LW
Sbjct: 185 EAVHEDIRVLSEDAIRTATE-KPLGELW 211

Catalyzes the conversion of dTMP to dTDP.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 9

>sp|Q54GN2|KTHY_DICDI Thymidylate kinase OS=Dictyostelium discoideum GN=dtymk PE=3 SV=1

 Score =  201 bits (510), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 92/188 (48%), Positives = 129/188 (68%), Gaps = 2/188 (1%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGH-SVELWRFPDRTTSVGQMISAYLSNQSHL 112
           RG  ++ EG+DR GK++Q   L +++  +     +  RFPDRTT +GQ+I+ YL N +++
Sbjct: 18  RGLFILFEGVDRVGKSTQVQSLTNHISNVQKLPTKSLRFPDRTTPIGQIINQYLQNATNM 77

Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL 172
           DD  +HLLFS+NRWE R  +   L  GT ++VDRYSYSGVA+S+AKGID +WC A E GL
Sbjct: 78  DDRALHLLFSSNRWEARDSILELLNNGTNIVVDRYSYSGVAYSAAKGIDFDWCYACEKGL 137

Query: 173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY-QMLRDSSWKIIDACQSIED 231
             PD + YL +  E A +RG YGGERYE LEFQ+K+ Q Y + L D  WKII+A +SI++
Sbjct: 138 PKPDLIFYLSMSSEDATKRGEYGGERYEKLEFQKKIKQIYEEKLVDDQWKIINANRSIDE 197

Query: 232 VEKQLKEI 239
           +  ++  I
Sbjct: 198 ISNEISSI 205

Catalyzes the conversion of dTMP to dTDP.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|P97930|KTHY_MOUSE Thymidylate kinase OS=Mus musculus GN=Dtymk PE=2 SV=2

 Score =  197 bits (502), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 95/208 (45%), Positives = 147/208 (70%), Gaps = 5/208 (2%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
           RGAL+VLEG+DR GKT+Q  +L++ L   GH  EL RFP+R+T +G+++++YL  ++ L+
Sbjct: 5   RGALIVLEGVDRAGKTTQGLKLVTALCASGHRAELLRFPERSTEIGKLLNSYLEKKTELE 64

Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
           DH++HLLFSANRWE+  +++AKL  G TL++DRY++SGVAF+ AK    ++WCK P++GL
Sbjct: 65  DHSVHLLFSANRWEQVPLIKAKLNQGVTLVLDRYAFSGVAFTGAKENFSLDWCKQPDVGL 124

Query: 173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML---RDSSWKIIDACQSI 229
             PD +L+L +    AA RG +G ERYE   FQ++V  C+Q L   ++ +WK++DA +SI
Sbjct: 125 PKPDLILFLQLQLLDAAARGEFGLERYETGTFQKQVLLCFQQLMEEKNLNWKVVDASKSI 184

Query: 230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
           E+V K+++    D +    + +P   LW
Sbjct: 185 EEVHKEIRAHSEDAIRNAAQ-RPLGELW 211

Catalyzes the conversion of dTMP to dTDP.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|P36590|KTHY_SCHPO Thymidylate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tmp1 PE=2 SV=2

 Score =  191 bits (484), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 129/194 (66%), Gaps = 6/194 (3%)

Query: 53  SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
           +RG L+V+EGLDR GK++QC  L+  L       EL++FPDRTT++G+ I  YL     L
Sbjct: 5   NRGRLIVIEGLDRSGKSTQCQLLVDKLISQHEKAELFKFPDRTTAIGKKIDDYLKESVQL 64

Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL 172
           +D  IHLLFSANRWE    +  ++  G T I+DRY++SG+AFS+AKG+D EWCK+P+ GL
Sbjct: 65  NDQVIHLLFSANRWETIQYIYEQINKGVTCILDRYAFSGIAFSAAKGLDWEWCKSPDRGL 124

Query: 173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML----RDSSWKII--DAC 226
             PD V++L++ P  AA RG YG ERYE +E Q KV + +Q L    R+   + I  DA 
Sbjct: 125 PRPDLVIFLNVDPRIAATRGQYGEERYEKIEMQEKVLKNFQRLQKEFREEGLEFITLDAS 184

Query: 227 QSIEDVEKQLKEIV 240
            S+EDV  Q+ ++V
Sbjct: 185 SSLEDVHSQIVDLV 198

Catalyzes the conversion of dTMP to dTDP.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|Q91FS1|KTHY_IIV6 Putative thymidylate kinase 251L OS=Invertebrate iridescent virus 6 GN=IIV6-251L PE=3 SV=1

 Score =  181 bits (460), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/191 (43%), Positives = 121/191 (63%), Gaps = 1/191 (0%)

Query: 51  IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS 110
           +++RG L+V EG D+ GK++QC  L   L+     V +  FP+RTT  G++I  YL  + 
Sbjct: 10  LETRGLLIVFEGCDKTGKSTQCKLLFEELKQKNIEVRMINFPNRTTQTGKLIDQYLKGKI 69

Query: 111 HLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEI 170
           +L D  IH+LFS NRWE    ++  +  G T+I+DRYSYSG+AFS AKG+D +WCK  E 
Sbjct: 70  YLSDEDIHILFSKNRWEIIDTIKTNILNGITVIIDRYSYSGIAFSVAKGLDFQWCKQTEN 129

Query: 171 GLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQ-MLRDSSWKIIDACQSI 229
           GLL PD ++YL    +  A R GYG E YE +E Q KV +CY+ M+    W  I+A Q +
Sbjct: 130 GLLKPDIIIYLTGQTKNMASRNGYGSEIYERIEIQDKVKKCYEKMIEIPLWNKINADQDV 189

Query: 230 EDVEKQLKEIV 240
             ++KQ++ I+
Sbjct: 190 LIIKKQIETII 200

Catalyzes the conversion of dTMP to dTDP.

Spodoptera frugiperda (taxid: 7108)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|Q22018|KTHY_CAEEL Probable thymidylate kinase OS=Caenorhabditis elegans GN=R53.2 PE=3 SV=1

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 127/213 (59%), Gaps = 14/213 (6%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLE---------GLGHSVELWRFPDRTTSVGQMISA 104
           RG L+V EGLDR GK++Q  RL+  +              S  L  FPDR++S+G++I  
Sbjct: 7   RGLLIVFEGLDRSGKSTQAKRLVESINKKSTESGDASSSPSAVLQAFPDRSSSIGKLIDQ 66

Query: 105 YLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEW 164
           YL  +  +D+H +HLLFSA+R+ K  M+   +  G  +I DRY YSGVA+S AKG+  +W
Sbjct: 67  YLRKEIDMDEHALHLLFSADRFSKNQMIRDNIAKGIDVICDRYCYSGVAYSLAKGLPEQW 126

Query: 165 CKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSS-WKII 223
            ++ ++GL  PD+VL+ D+ PE AA+RGG+G ER E    Q+KVA     LRD + WK +
Sbjct: 127 VRSSDVGLPKPDAVLFFDVSPEVAAQRGGFGEERLETATIQQKVAAVMPTLRDDAYWKTV 186

Query: 224 DACQSIEDVEKQLKEIVLDQVTACKKGKPFSLL 256
           +A   ++ VEK +  I  +      + KPF  L
Sbjct: 187 NADGDLDSVEKNVFRIYEN----LDREKPFESL 215

Catalyzes the conversion of dTMP to dTDP.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|P00572|KTHY_YEAST Thymidylate kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC8 PE=1 SV=2

 Score =  161 bits (407), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 124/192 (64%), Gaps = 9/192 (4%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS-HL 112
           RG L+++EGLDR GKT+QC+ L   L+    + +L +FP+R+T +G +I+ YL++ S  L
Sbjct: 4   RGKLILIEGLDRTGKTTQCNILYKKLQ---PNCKLLKFPERSTRIGGLINEYLTDDSFQL 60

Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK---GIDIEWCKAPE 169
            D  IHLLFSANRWE    ++  L  G  +++DRY YSGVA+S+AK   G+D++WC  P+
Sbjct: 61  SDQAIHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPD 120

Query: 170 IGLLAPDSVLYLDIPP-EKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQS 228
           +GLL PD  L+L     +  AE+ G+G ERYE ++FQ KV Q +  L D   +  D   +
Sbjct: 121 VGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQTFMKLLDKEIRKGDESIT 180

Query: 229 IEDV-EKQLKEI 239
           I DV  K ++E+
Sbjct: 181 IVDVTNKGIQEV 192

Catalyzes the conversion of dTMP to dTDP.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|Q8QQ21|KTHY_CAMPS Thymidylate kinase OS=Camelpox virus (strain CMS) GN=TMK PE=3 SV=1

 Score =  154 bits (389), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 85/209 (40%), Positives = 131/209 (62%), Gaps = 11/209 (5%)

Query: 53  SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
           SRGAL+V EGLD+ GKT+QC  ++  +  L ++++   FP R+T  G+MI  YL+ +   
Sbjct: 2   SRGALIVFEGLDKSGKTTQCMNIMESI--LANTIKYLNFPQRSTVTGKMIDDYLTRKKTY 59

Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL 172
           +DH ++LLF ANRWE  S ++ +L+ G TLIVDRY++SGVA+++AKG  +   K+ E GL
Sbjct: 60  NDHIVNLLFCANRWEFASFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYEFGL 119

Query: 173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML---RDSSWKIIDACQSI 229
             PD V++L+   ++  +    G E YE + FQ+KV Q Y+ +    D  W+II + +  
Sbjct: 120 PKPDLVIFLESGSKEINKN--VGEEIYEDVAFQQKVLQEYKKMIEEGDIHWQII-SSEFE 176

Query: 230 EDVEKQL-KEIVLDQVTACKKGKPFSLLW 257
           EDV+K+L K IV++ +       P   LW
Sbjct: 177 EDVKKELIKNIVIEAIHTVT--GPVGQLW 203

Camelus (taxid: 9836)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|Q8V2K9|KTHY_CAMPM Thymidylate kinase OS=Camelpox virus (strain M-96) GN=TMK PE=3 SV=2

 Score =  154 bits (389), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 85/209 (40%), Positives = 131/209 (62%), Gaps = 11/209 (5%)

Query: 53  SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
           SRGAL+V EGLD+ GKT+QC  ++  +  L ++++   FP R+T  G+MI  YL+ +   
Sbjct: 2   SRGALIVFEGLDKSGKTTQCMNIMESI--LANTIKYLNFPQRSTVTGKMIDDYLTRKKTY 59

Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL 172
           +DH ++LLF ANRWE  S ++ +L+ G TLIVDRY++SGVA+++AKG  +   K+ E GL
Sbjct: 60  NDHIVNLLFCANRWEFASFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYEFGL 119

Query: 173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML---RDSSWKIIDACQSI 229
             PD V++L+   ++  +    G E YE + FQ+KV Q Y+ +    D  W+II + +  
Sbjct: 120 PKPDLVIFLESGSKEINKN--VGEEIYEDVAFQQKVLQEYKKMIEEGDIHWQII-SSEFE 176

Query: 230 EDVEKQL-KEIVLDQVTACKKGKPFSLLW 257
           EDV+K+L K IV++ +       P   LW
Sbjct: 177 EDVKKELIKNIVIEAIHTVT--GPVGQLW 203

Camelus (taxid: 9836)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|Q80DS7|KTHY_CWPXG Thymidylate kinase OS=Cowpox virus (strain GRI-90 / Grishak) GN=TMK PE=3 SV=2

 Score =  152 bits (385), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/209 (41%), Positives = 130/209 (62%), Gaps = 11/209 (5%)

Query: 53  SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
           SRGAL+V EGLD+ GKT+QC  ++  +    ++++   FP R+T  G+MI  YL+ +   
Sbjct: 2   SRGALIVFEGLDKSGKTTQCMNIMESIPS--NTIKYLNFPQRSTVTGKMIDDYLTRKKTY 59

Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL 172
           +DH ++LLF ANRWE  S ++ +L+ G TLIVDRY++SGVA+++AKG  +   K+ E GL
Sbjct: 60  NDHIVNLLFCANRWEFASFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGL 119

Query: 173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML---RDSSWKIIDACQSI 229
             PD V++L+    K   R   G E YE +EFQ+KV Q Y+ +    D  W+II + +  
Sbjct: 120 PKPDLVIFLE-SGSKEINR-NVGEEIYEDVEFQQKVLQEYKKMIEEGDIHWQII-SSEFE 176

Query: 230 EDVEKQL-KEIVLDQVTACKKGKPFSLLW 257
           EDV+K+L K IV++ +       P   LW
Sbjct: 177 EDVKKELIKNIVIEAIHTVT--GPVGQLW 203

Myodes glareolus (taxid: 447135)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
255536995	264	thymidylate kinase, putative [Ricinus co	0.992	0.973	0.724	1e-106
224055681	222	predicted protein [Populus trichocarpa]	0.845	0.986	0.814	1e-102
225452175	260	PREDICTED: thymidylate kinase [Vitis vin	0.976	0.973	0.710	3e-98
297793501	263	thymidylate kinase family protein [Arabi	0.984	0.969	0.683	2e-97
255644957	299	unknown [Glycine max]	0.976	0.846	0.707	4e-97
145334853	271	protein ZEU1 (ZEUS1) [Arabidopsis thalia	0.934	0.892	0.708	7e-97
357452915	263	Thymidylate kinase [Medicago truncatula]	0.996	0.980	0.687	9e-97
30697225	263	protein ZEU1 (ZEUS1) [Arabidopsis thalia	0.934	0.920	0.708	1e-96
357442919	263	Thymidylate kinase [Medicago truncatula]	0.996	0.980	0.687	1e-96
21553651	263	thymidylate kinase-like protein [Arabido	0.934	0.920	0.708	2e-96

>gi|255536995|ref|XP_002509564.1| thymidylate kinase, putative [Ricinus communis] gi|223549463|gb|EEF50951.1| thymidylate kinase, putative [Ricinus communis]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/261 (72%), Positives = 213/261 (81%), Gaps = 4/261 (1%)

Query: 1   MTHACSFTLSKALNFGALFVRRS-KFHLNCLPKCSCTPFRMES---SSSLRIGNIDSRGA 56
           MT+AC+  + KAL FGA   RRS   HLN   K S    RMES   + +LR+ N +SRGA
Sbjct: 1   MTYACALKVPKALTFGASAARRSLNAHLNYPGKSSIRSIRMESDISTGNLRVENCESRGA 60

Query: 57  LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT 116
            +VLEGLDR GKTSQC +L+SYLE LGH  ELWRFPDRTT++GQMISAYLSNQS LDD T
Sbjct: 61  FIVLEGLDRSGKTSQCGKLVSYLERLGHETELWRFPDRTTTIGQMISAYLSNQSQLDDRT 120

Query: 117 IHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPD 176
           IHLL+SANRWEK S+ME KLK+GTTLIVDRYSYSGVAFS+AKG+D EWCKAPEIGLLAPD
Sbjct: 121 IHLLYSANRWEKNSLMETKLKSGTTLIVDRYSYSGVAFSAAKGLDFEWCKAPEIGLLAPD 180

Query: 177 SVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQL 236
            VLYLDIPPEKAAERGGYGGERYE LEFQ KV  CYQ LRDSSW+IIDA Q +E+V+KQ+
Sbjct: 181 LVLYLDIPPEKAAERGGYGGERYEKLEFQMKVGNCYQTLRDSSWEIIDASQPMEEVQKQI 240

Query: 237 KEIVLDQVTACKKGKPFSLLW 257
           +EIVLD V A +KGKP S LW
Sbjct: 241 QEIVLDHVLASEKGKPLSHLW 261

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055681|ref|XP_002298600.1| predicted protein [Populus trichocarpa] gi|222845858|gb|EEE83405.1| predicted protein [Populus trichocarpa]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/221 (81%), Positives = 200/221 (90%), Gaps = 2/221 (0%)

Query: 40  MESSSS--LRIGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTS 97
           MESSS+  LR  + +SRGAL+VLEGLDR GKTSQ SRLLSYLEGLGHS ELWRFPDR+TS
Sbjct: 1   MESSSNCNLRASSSESRGALIVLEGLDRSGKTSQSSRLLSYLEGLGHSTELWRFPDRSTS 60

Query: 98  VGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSA 157
           VGQMISAYLSN+SHLDD TIHLLFSANRWEKRS+ME +LK GTTL+VDRYSYSGVAFSSA
Sbjct: 61  VGQMISAYLSNKSHLDDRTIHLLFSANRWEKRSLMETQLKNGTTLVVDRYSYSGVAFSSA 120

Query: 158 KGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRD 217
           KG+DIEWCKAPE+GLLAPD VLYLDIPPEKAAERGGYGGERYE LEFQ+KVA+CYQ L D
Sbjct: 121 KGLDIEWCKAPEVGLLAPDIVLYLDIPPEKAAERGGYGGERYEQLEFQKKVAKCYQALCD 180

Query: 218 SSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWS 258
           SSWK+IDACQ IED+EKQL++ VLD V AC++G+P S LWS
Sbjct: 181 SSWKVIDACQPIEDIEKQLQDAVLDHVMACERGRPLSYLWS 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452175|ref|XP_002264926.1| PREDICTED: thymidylate kinase [Vitis vinifera] gi|296090257|emb|CBI40076.3| unnamed protein product [Vitis vinifera]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 184/259 (71%), Positives = 206/259 (79%), Gaps = 6/259 (2%)

Query: 1   MTHACSFTLSKALNFGALFVRR-SKFHLNCLPKCSCTPFRMESSSSLRIGNIDSRGALVV 59
           M+HA  F L K LNFGA   R   KF  N    CS     ME++      N DSRGAL+V
Sbjct: 1   MSHASHFRLPKLLNFGAGSARGLVKFGSNLRCNCSFRNMHMENNR-----NSDSRGALIV 55

Query: 60  LEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHL 119
           LEGLDR GK+SQ SR++SYLEGLG S ELWRFPDR+T VGQMIS+YL+N+S LDDHTIHL
Sbjct: 56  LEGLDRSGKSSQSSRMMSYLEGLGVSAELWRFPDRSTCVGQMISSYLANKSDLDDHTIHL 115

Query: 120 LFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVL 179
           LFSANRWEKRS+ME KL+ GTTLIVDRYSYSGVAFSSAKG+DIEWCKAPE+GLLAPD V+
Sbjct: 116 LFSANRWEKRSLMETKLRTGTTLIVDRYSYSGVAFSSAKGLDIEWCKAPEMGLLAPDLVV 175

Query: 180 YLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEI 239
           YL+IPPEKAAERGGYGGERYE L+FQRKVA  YQ+LRD SWKIIDA   IEDVEK L+++
Sbjct: 176 YLNIPPEKAAERGGYGGERYEQLDFQRKVAHHYQVLRDPSWKIIDASLPIEDVEKPLRDM 235

Query: 240 VLDQVTACKKGKPFSLLWS 258
           VLD V  CKKGK    LWS
Sbjct: 236 VLDCVKTCKKGKTLLNLWS 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793501|ref|XP_002864635.1| thymidylate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297310470|gb|EFH40894.1| thymidylate kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 181/265 (68%), Positives = 213/265 (80%), Gaps = 10/265 (3%)

Query: 1   MTHACSFTLSKALN--FGALFVRRS-KFHLNCLPKCSCTPFRMESS---SSLRIG-NIDS 53
           M   CSF+  +  +  F AL   RS  + L  L + S    RMESS   S +R   ++  
Sbjct: 1   MKRICSFSSVQLFSRSFRALASPRSLNYPLQSLKRSSV---RMESSNFSSGVRTDTSVKP 57

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
           RGAL+VLEGLDR GK++QC++LLS+LEGLGH  ELWRFPDR TSVGQMISAYLSN+S LD
Sbjct: 58  RGALIVLEGLDRSGKSTQCAKLLSFLEGLGHPTELWRFPDRETSVGQMISAYLSNKSQLD 117

Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL 173
           DHTIHLLFSANRWEKRS+ME KLK GTTLIVDRYSYSGVAFSSAKG++I+WCKAPEIGLL
Sbjct: 118 DHTIHLLFSANRWEKRSLMEEKLKTGTTLIVDRYSYSGVAFSSAKGLNIDWCKAPEIGLL 177

Query: 174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVE 233
           APDSVLYLDI PE+AAERGGYG ERYE +EFQ+KVA  YQ LRDSSWKII+A +++E+VE
Sbjct: 178 APDSVLYLDISPERAAERGGYGDERYERVEFQKKVADFYQTLRDSSWKIINAGEAMEEVE 237

Query: 234 KQLKEIVLDQVTACKKGKPFSLLWS 258
           K+++E+ LD+V  C KGKP SLLWS
Sbjct: 238 KKIQEVALDKVKECTKGKPLSLLWS 262

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644957|gb|ACU22978.1| unknown [Glycine max]

 Score =  360 bits (924), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 181/256 (70%), Positives = 204/256 (79%), Gaps = 3/256 (1%)

Query: 1   MTHACSFTLSKALNFGALFVRRS-KFHLNCLPKCSCTPFRMESS--SSLRIGNIDSRGAL 57
           M +    T SK+L F AL +++   F +    KC  T  RMES+   S+   N  SRGAL
Sbjct: 1   MIYGTCVTASKSLIFRALVLQKPLNFQVKFSSKCFPTKIRMESNLNHSIEGNNKASRGAL 60

Query: 58  VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTI 117
           VVLEGLDR GK+SQCSRL+ +LEG G S ELWRFPDRTT+VGQMISAYL+N S LDDHTI
Sbjct: 61  VVLEGLDRSGKSSQCSRLVPFLEGQGISAELWRFPDRTTNVGQMISAYLTNTSQLDDHTI 120

Query: 118 HLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDS 177
           HLLFSANRWEKRS+ME+KLK GTTLIVDRYSYSGVAFSSAKG+D EWCK PEIGL APD 
Sbjct: 121 HLLFSANRWEKRSLMESKLKTGTTLIVDRYSYSGVAFSSAKGLDFEWCKVPEIGLPAPDV 180

Query: 178 VLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLK 237
           V+YLDI PEKAAERGGYGGERYE LEFQ+KVA  Y++L D SWK +DACQ IEDVEKQL+
Sbjct: 181 VVYLDISPEKAAERGGYGGERYEKLEFQKKVADWYKVLHDVSWKDVDACQPIEDVEKQLQ 240

Query: 238 EIVLDQVTACKKGKPF 253
           EIVLD VT C+KG PF
Sbjct: 241 EIVLDCVTECRKGSPF 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334853|ref|NP_001078772.1| protein ZEU1 (ZEUS1) [Arabidopsis thaliana] gi|332009807|gb|AED97190.1| protein ZEU1 (ZEUS1) [Arabidopsis thaliana]

 Score =  359 bits (921), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 177/250 (70%), Positives = 206/250 (82%), Gaps = 8/250 (3%)

Query: 14  NFGALFVRRS-KFHLNCLPKCSCTPFRMESS---SSLRI-GNIDSRGALVVLEGLDRCGK 68
           +F AL   RS  + L C+ + S    RMESS   S +R   ++  RGAL+VLEGLDR GK
Sbjct: 24  SFRALASPRSLNYPLQCIKRSSV---RMESSNFSSGVRTESSVKPRGALIVLEGLDRSGK 80

Query: 69  TSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK 128
           ++QC++LLS+L GLGH  ELWRFPDR TSVGQMISAYLSN+S LDDHTIHLLFSANRWEK
Sbjct: 81  STQCAKLLSFLNGLGHPTELWRFPDRETSVGQMISAYLSNKSQLDDHTIHLLFSANRWEK 140

Query: 129 RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKA 188
           RS+ME KLK GTTLIVDRYSYSGVAFSSAKG+DIEWCKAPEIGLLAPDSVLYLDI PE+A
Sbjct: 141 RSLMEEKLKTGTTLIVDRYSYSGVAFSSAKGLDIEWCKAPEIGLLAPDSVLYLDISPERA 200

Query: 189 AERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACK 248
           AERGGYG ERYE +EFQ+KVA  YQ L DSSWKII+A  ++E+VEK+++++VLDQV  C 
Sbjct: 201 AERGGYGDERYERVEFQKKVADFYQTLGDSSWKIINASDAMEEVEKKIQQVVLDQVKECT 260

Query: 249 KGKPFSLLWS 258
           +GKP SLLWS
Sbjct: 261 EGKPLSLLWS 270

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452915|ref|XP_003596734.1| Thymidylate kinase [Medicago truncatula] gi|355485782|gb|AES66985.1| Thymidylate kinase [Medicago truncatula]

 Score =  358 bits (920), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 180/262 (68%), Positives = 208/262 (79%), Gaps = 4/262 (1%)

Query: 1   MTHACSFTLSKALNFGALFVRRS-KFHLNCLPKCSCTPFRMES---SSSLRIGNIDSRGA 56
           M +    T  K+L+F AL +  S  F +    KCS    RME+   S S+     +SRGA
Sbjct: 1   MIYGTCITALKSLSFRALVLPNSLNFQVKLSSKCSPRRIRMEAGNLSCSIEGNKKESRGA 60

Query: 57  LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT 116
           L+VLEGLDR GK+SQCSRL+SYLEG G S ELWRFPDRTT+VGQMISAYL+N S LDDHT
Sbjct: 61  LIVLEGLDRSGKSSQCSRLVSYLEGEGLSAELWRFPDRTTNVGQMISAYLTNASQLDDHT 120

Query: 117 IHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPD 176
           IHLLFSANRWEKRS+ME KLK+GTTLIVDRYSYSGVAFSSAKG+DI+WCK+PE GLLAPD
Sbjct: 121 IHLLFSANRWEKRSLMETKLKSGTTLIVDRYSYSGVAFSSAKGLDIDWCKSPENGLLAPD 180

Query: 177 SVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQL 236
            V YLDI P+KAAERGGYG ERYE LEFQ+KVA+ Y++L D+SWKI+DACQ IEDVEKQL
Sbjct: 181 LVAYLDISPDKAAERGGYGDERYEKLEFQQKVAEHYKVLHDASWKIVDACQPIEDVEKQL 240

Query: 237 KEIVLDQVTACKKGKPFSLLWS 258
           +EI L  V  C++GKP S LWS
Sbjct: 241 QEIALACVKQCQQGKPLSSLWS 262

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697225|ref|NP_851222.1| protein ZEU1 (ZEUS1) [Arabidopsis thaliana] gi|110741098|dbj|BAE98643.1| thymidylate kinase - like protein [Arabidopsis thaliana] gi|332009806|gb|AED97189.1| protein ZEU1 (ZEUS1) [Arabidopsis thaliana]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 177/250 (70%), Positives = 206/250 (82%), Gaps = 8/250 (3%)

Query: 14  NFGALFVRRS-KFHLNCLPKCSCTPFRMESS---SSLRI-GNIDSRGALVVLEGLDRCGK 68
           +F AL   RS  + L C+ + S    RMESS   S +R   ++  RGAL+VLEGLDR GK
Sbjct: 16  SFRALASPRSLNYPLQCIKRSSV---RMESSNFSSGVRTESSVKPRGALIVLEGLDRSGK 72

Query: 69  TSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK 128
           ++QC++LLS+L GLGH  ELWRFPDR TSVGQMISAYLSN+S LDDHTIHLLFSANRWEK
Sbjct: 73  STQCAKLLSFLNGLGHPTELWRFPDRETSVGQMISAYLSNKSQLDDHTIHLLFSANRWEK 132

Query: 129 RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKA 188
           RS+ME KLK GTTLIVDRYSYSGVAFSSAKG+DIEWCKAPEIGLLAPDSVLYLDI PE+A
Sbjct: 133 RSLMEEKLKTGTTLIVDRYSYSGVAFSSAKGLDIEWCKAPEIGLLAPDSVLYLDISPERA 192

Query: 189 AERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACK 248
           AERGGYG ERYE +EFQ+KVA  YQ L DSSWKII+A  ++E+VEK+++++VLDQV  C 
Sbjct: 193 AERGGYGDERYERVEFQKKVADFYQTLGDSSWKIINASDAMEEVEKKIQQVVLDQVKECT 252

Query: 249 KGKPFSLLWS 258
           +GKP SLLWS
Sbjct: 253 EGKPLSLLWS 262

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442919|ref|XP_003591737.1| Thymidylate kinase [Medicago truncatula] gi|355480785|gb|AES61988.1| Thymidylate kinase [Medicago truncatula]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 180/262 (68%), Positives = 207/262 (79%), Gaps = 4/262 (1%)

Query: 1   MTHACSFTLSKALNFGAL-FVRRSKFHLNCLPKCSCTPFRMES---SSSLRIGNIDSRGA 56
           M +    T  K+L+F AL F     F +    KCS    RME+   S S+     +SRGA
Sbjct: 1   MIYGTCITALKSLSFRALVFPNSLNFQVKLSSKCSPRRIRMEAGNLSCSIEGNKKESRGA 60

Query: 57  LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT 116
           L+VLEGLDR GK+SQCSRL+SYLEG G S ELWRFPDRTT+VGQMISAYL+N S LDDHT
Sbjct: 61  LIVLEGLDRSGKSSQCSRLVSYLEGEGLSAELWRFPDRTTNVGQMISAYLTNASQLDDHT 120

Query: 117 IHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPD 176
           IHLLFSANRWEKRS+ME KLK+GTTLIVDRYSYSGVAFSSAKG+DI+WCKAPE GLLAPD
Sbjct: 121 IHLLFSANRWEKRSLMETKLKSGTTLIVDRYSYSGVAFSSAKGLDIDWCKAPENGLLAPD 180

Query: 177 SVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQL 236
            V YLDI P+KAAERGGYG ERYE LEFQ+KVA+ Y++L D+SWKI+DACQ I+DVEKQL
Sbjct: 181 LVAYLDISPDKAAERGGYGDERYEKLEFQQKVAEHYKVLHDASWKIVDACQPIQDVEKQL 240

Query: 237 KEIVLDQVTACKKGKPFSLLWS 258
           +EI L  V  C++GKP S LWS
Sbjct: 241 QEIALACVKQCQQGKPLSSLWS 262

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553651|gb|AAM62744.1| thymidylate kinase-like protein [Arabidopsis thaliana]

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 177/250 (70%), Positives = 206/250 (82%), Gaps = 8/250 (3%)

Query: 14  NFGALFVRRS-KFHLNCLPKCSCTPFRMESS---SSLRI-GNIDSRGALVVLEGLDRCGK 68
           +F AL   RS  + L C+ + S    RMESS   S +R   ++  RGAL+VLEGLDR GK
Sbjct: 16  SFRALASPRSLNYPLQCIKRSSV---RMESSNCSSGVRTESSVKPRGALIVLEGLDRSGK 72

Query: 69  TSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK 128
           ++QC++LLS+L GLGH  ELWRFPDR TSVGQMISAYLSN+S LDDHTIHLLFSANRWEK
Sbjct: 73  STQCAKLLSFLNGLGHPTELWRFPDRETSVGQMISAYLSNKSQLDDHTIHLLFSANRWEK 132

Query: 129 RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKA 188
           RS+ME KLK GTTLIVDRYSYSGVAFSSAKG+DIEWCKAPEIGLLAPDSVLYLDI PE+A
Sbjct: 133 RSLMEEKLKTGTTLIVDRYSYSGVAFSSAKGLDIEWCKAPEIGLLAPDSVLYLDISPERA 192

Query: 189 AERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACK 248
           AERGGYG ERYE +EFQ+KVA  YQ L DSSWKII+A  ++E+VEK+++++VLDQV  C 
Sbjct: 193 AERGGYGDERYERVEFQKKVADFYQTLGDSSWKIINASDAMEEVEKKIQQVVLDQVKECT 252

Query: 249 KGKPFSLLWS 258
           +GKP SLLWS
Sbjct: 253 EGKPLSLLWS 262

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2148283	271	ZEU1 "ZEUS1" [Arabidopsis thal	0.984	0.940	0.641	1e-82
ZFIN|ZDB-GENE-990603-11	212	dtymk "deoxythymidylate kinase	0.783	0.957	0.466	5.2e-49
UNIPROTKB|F1NVI0	216	DTYMK "Uncharacterized protein	0.810	0.972	0.453	3.7e-48
RGD|1309614	212	Dtymk "deoxythymidylate kinase	0.783	0.957	0.442	8.8e-47
UNIPROTKB|F1MJB1	212	DTYMK "Uncharacterized protein	0.787	0.962	0.435	1.5e-44
UNIPROTKB|P23919	212	DTYMK "Thymidylate kinase" [Ho	0.783	0.957	0.423	3.1e-44
MGI|MGI:108396	212	Dtymk "deoxythymidylate kinase	0.783	0.957	0.423	3.9e-44
ASPGD|ASPL0000011117	223	AN8213 [Emericella nidulans (t	0.810	0.941	0.423	1.4e-41
DICTYBASE|DDB_G0290033	222	dtymk "thymidylate kinase" [Di	0.718	0.837	0.441	3.3e-40
FB|FBgn0034299	225	CG5757 [Drosophila melanogaste	0.718	0.826	0.449	3.3e-40

TAIR|locus:2148283 ZEU1 "ZEUS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 170/265 (64%), Positives = 201/265 (75%)

Query:     1 MTHACSFTLSKALN--FGALFVRRS-KFHLNCLPKCSCTPFRMESS---SSLRI-GNIDS 53
             M   CS +  +  +  F AL   RS  + L C+ + S    RMESS   S +R   ++  
Sbjct:     9 MKRICSVSSVQLFSRSFRALASPRSLNYPLQCIKRSSV---RMESSNFSSGVRTESSVKP 65

Query:    54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
             RGAL+VLEGLDR GK++QC++LLS+L GLGH  ELWRFPDR TSVGQMISAYLSN+S LD
Sbjct:    66 RGALIVLEGLDRSGKSTQCAKLLSFLNGLGHPTELWRFPDRETSVGQMISAYLSNKSQLD 125

Query:   114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL 173
             DHTIHLLFSANRWEKRS+ME KLK GTTLIVDRYSYSGVAFSSAKG+DIEWCKAPEIGLL
Sbjct:   126 DHTIHLLFSANRWEKRSLMEEKLKTGTTLIVDRYSYSGVAFSSAKGLDIEWCKAPEIGLL 185

Query:   174 APDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVE 233
             APDSVLYLDI PE+AA            +EFQ+KVA  YQ L DSSWKII+A  ++E+VE
Sbjct:   186 APDSVLYLDISPERAAERGGYGDERYERVEFQKKVADFYQTLGDSSWKIINASDAMEEVE 245

Query:   234 KQLKEIVLDQVTACKKGKPFSLLWS 258
             K+++++VLDQV  C +GKP SLLWS
Sbjct:   246 KKIQQVVLDQVKECTEGKPLSLLWS 270

GO:0004798 "thymidylate kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-990603-11 dtymk "deoxythymidylate kinase (thymidylate kinase)" [Danio rerio (taxid:7955)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 97/208 (46%), Positives = 144/208 (69%)

Query:    54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
             RGAL+VLEG+DR GKT+QC +L+  ++  G + E+ RFPDRTT +GQ+IS+YL  +S+L+
Sbjct:     5 RGALIVLEGVDRAGKTTQCQKLVQAIQQSGRAAEIMRFPDRTTKIGQLISSYLEKKSNLE 64

Query:   114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
             DHT+HLLFSANRWE   +M+ KL+ G  L+VDRY++SGVAF+SAK G  +EWC  P++GL
Sbjct:    65 DHTVHLLFSANRWEMVPVMKQKLEEGINLVVDRYAFSGVAFTSAKPGFSLEWCMNPDVGL 124

Query:   173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQ-MLRDSS--WKIIDACQSI 229
               PD V++L + P  AA              FQR V Q ++ +++D+S  WK+IDA ++I
Sbjct:   125 PKPDLVMFLQLNPNVAANRGEYGNERYETSAFQRTVQQRFEELMQDTSINWKVIDAARTI 184

Query:   230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
             E+V K +K++  + + +  + +P   LW
Sbjct:   185 EEVHKDIKDLS-ENIISLAEEQPVGELW 211

GO:0004798 "thymidylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1NVI0 DTYMK "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 98/216 (45%), Positives = 143/216 (66%)

Query:    47 RIGNI-DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAY 105
             ++G +   RGAL+VLEG+DR GK++QC RL+  L+  GH  +L RFP+RTT +GQ+ISAY
Sbjct:     1 KVGKMAGGRGALIVLEGMDRAGKSTQCRRLVQALQAAGHRADLLRFPERTTEIGQLISAY 60

Query:   106 LSNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEW 164
             L+ +  L+DH +HLLFSANRWE  ++M+ KL  G TL+VDRY++SGVAF+SAK    +EW
Sbjct:    61 LARERELEDHAVHLLFSANRWEHVTLMKEKLHQGITLVVDRYAFSGVAFTSAKENFCLEW 120

Query:   165 CKAPEIGLLAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQML---RDSSWK 221
             CK  + GL  PD +L+L + PE+AA           +  FQ KV Q ++ L   +  +WK
Sbjct:   121 CKQTDAGLPKPDLILFLQLSPEEAAARGNFGGERYENGAFQEKVLQSFRHLMKEKTLNWK 180

Query:   222 IIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLW 257
              +DA +SIED+ +++K +  ++     K +P   LW
Sbjct:   181 TMDASKSIEDLHREIKTVA-EKTMQEVKDEPLGELW 215

GO:0005524 "ATP binding" evidence=IEA

GO:0071363 "cellular response to growth factor stimulus" evidence=IEA

GO:0004798 "thymidylate kinase activity" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

GO:0050145 "nucleoside phosphate kinase activity" evidence=IEA

RGD|1309614 Dtymk "deoxythymidylate kinase (thymidylate kinase)" [Rattus norvegicus (taxid:10116)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 92/208 (44%), Positives = 141/208 (67%)

Query:    54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
             RGAL+VLEG+DR GKT+QC RL++ L   GH  EL RFP+R+T +G+++S+YL  ++ L+
Sbjct:     5 RGALIVLEGVDRAGKTTQCLRLVTALCASGHRAELLRFPERSTEIGKLLSSYLEKKTELE 64

Query:   114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
             DH++HLLFSANRWE+  +++AKL  G TL++DRY++SGVAF+SAK    ++WCK P++GL
Sbjct:    65 DHSVHLLFSANRWEQVPLIKAKLNQGVTLVLDRYAFSGVAFTSAKENFSLDWCKQPDVGL 124

Query:   173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQML---RDSSWKIIDACQSI 229
               PD +L+L +    AA              FQ +V  C+Q L   ++ +WK++DA +SI
Sbjct:   125 PKPDLILFLQLQLLDAASRGEFGLERYETGTFQEQVLLCFQQLMSEKNLNWKVVDASKSI 184

Query:   230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
             EDV ++++ +  D +    + +P   LW
Sbjct:   185 EDVHEEIRALSEDAIQNAAQ-RPLEELW 211

GO:0004798 "thymidylate kinase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0006233 "dTDP biosynthetic process" evidence=ISO;IDA

GO:0006235 "dTTP biosynthetic process" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=ISO

GO:0043627 "response to estrogen stimulus" evidence=IEP

GO:0045445 "myoblast differentiation" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0046939 "nucleotide phosphorylation" evidence=ISO

GO:0046940 "nucleoside monophosphate phosphorylation" evidence=ISO

GO:0050145 "nucleoside phosphate kinase activity" evidence=IEA;ISO

GO:0071363 "cellular response to growth factor stimulus" evidence=IEA;ISO

UNIPROTKB|F1MJB1 DTYMK "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 91/209 (43%), Positives = 139/209 (66%)

Query:    54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
             RGAL+VLEG+DR GK++Q  +L+  L   GH  EL RFP+R+T +G+++S+YL  +S ++
Sbjct:     5 RGALIVLEGVDRAGKSTQSRKLVDALCAEGHRAELLRFPERSTEIGKLLSSYLEKKSEVE 64

Query:   114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
             DH++HLLFSANRWE   +M+ KL  G TL+VDRY++SGVAF+SAK    ++WCK P++GL
Sbjct:    65 DHSVHLLFSANRWEHVPLMKEKLSQGVTLVVDRYAFSGVAFTSAKENFSLDWCKQPDVGL 124

Query:   173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQ-MLRDSS--WKIIDACQSI 229
               PD V++L +   +AA              FQ++  Q +Q +L D S  WK+++A +SI
Sbjct:   125 PKPDLVVFLQLQLAEAAARGEFGRERYESGPFQQRALQRFQQLLADPSLPWKMVNASRSI 184

Query:   230 EDVEKQLKEIVLDQVTACKKGKPFSLLWS 258
             EDV ++++ +  D + A    +P   LW+
Sbjct:   185 EDVHREIRALSEDAIRAAAH-RPLGQLWA 212

GO:0071363 "cellular response to growth factor stimulus" evidence=IEA

GO:0050145 "nucleoside phosphate kinase activity" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

GO:0004798 "thymidylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P23919 DTYMK "Thymidylate kinase" [Homo sapiens (taxid:9606)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 88/208 (42%), Positives = 138/208 (66%)

Query:    54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
             RGAL+VLEG+DR GK++Q  +L+  L   GH  EL RFP+R+T +G+++S+YL  +S ++
Sbjct:     5 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 64

Query:   114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
             DH++HLLFSANRWE+  +++ KL  G TL+VDRY++SGVAF+ AK    ++WCK P++GL
Sbjct:    65 DHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGL 124

Query:   173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCY-QMLRDSS--WKIIDACQSI 229
               PD VL+L +    AA           +  FQ +  +C+ Q+++D++  WK++DA +SI
Sbjct:   125 PKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSI 184

Query:   230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
             E V + ++ +  D +    + KP   LW
Sbjct:   185 EAVHEDIRVLSEDAIRTATE-KPLGELW 211

GO:0005524 "ATP binding" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0045445 "myoblast differentiation" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEA

GO:0071363 "cellular response to growth factor stimulus" evidence=IEA

GO:0006235 "dTTP biosynthetic process" evidence=IEA

GO:0007049 "cell cycle" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0004798 "thymidylate kinase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0050145 "nucleoside phosphate kinase activity" evidence=EXP

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0046940 "nucleoside monophosphate phosphorylation" evidence=EXP

MGI|MGI:108396 Dtymk "deoxythymidylate kinase" [Mus musculus (taxid:10090)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 88/208 (42%), Positives = 138/208 (66%)

Query:    54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
             RGAL+VLEG+DR GKT+Q  +L++ L   GH  EL RFP+R+T +G+++++YL  ++ L+
Sbjct:     5 RGALIVLEGVDRAGKTTQGLKLVTALCASGHRAELLRFPERSTEIGKLLNSYLEKKTELE 64

Query:   114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
             DH++HLLFSANRWE+  +++AKL  G TL++DRY++SGVAF+ AK    ++WCK P++GL
Sbjct:    65 DHSVHLLFSANRWEQVPLIKAKLNQGVTLVLDRYAFSGVAFTGAKENFSLDWCKQPDVGL 124

Query:   173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQMLRDS---SWKIIDACQSI 229
               PD +L+L +    AA              FQ++V  C+Q L +    +WK++DA +SI
Sbjct:   125 PKPDLILFLQLQLLDAAARGEFGLERYETGTFQKQVLLCFQQLMEEKNLNWKVVDASKSI 184

Query:   230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
             E+V K+++    D +    + +P   LW
Sbjct:   185 EEVHKEIRAHSEDAIRNAAQ-RPLGELW 211

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004798 "thymidylate kinase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0006233 "dTDP biosynthetic process" evidence=ISO;IDA

GO:0006235 "dTTP biosynthetic process" evidence=ISO

GO:0009165 "nucleotide biosynthetic process" evidence=IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IDA

GO:0071363 "cellular response to growth factor stimulus" evidence=IDA

ASPGD|ASPL0000011117 AN8213 [Emericella nidulans (taxid:162425)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 92/217 (42%), Positives = 130/217 (59%)

Query:    49 GNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSN 108
             G    RGAL+V+EGLDR GK+SQC  L + L+  G  V+  RFPDRTT +G++I  YL  
Sbjct:     5 GTHGGRGALIVVEGLDRAGKSSQCKFLHNILQEGGRPVKYIRFPDRTTPIGKLIDGYLRG 64

Query:   109 QSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKG---IDIEWC 165
             QSHLDDH+IHLLFSANRWE    +EA +  GT++I+DRYSYSG  +S+AK    + +EW 
Sbjct:    65 QSHLDDHSIHLLFSANRWEVAQSIEADIANGTSVIIDRYSYSGAVYSAAKANPSLSLEWA 124

Query:   166 KAPEIGLLAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQMLRD----SSWK 221
               PE+GL  PD  L+L I PE+AA           +   Q +V + +  + D    +  +
Sbjct:   125 WQPEVGLPKPDLCLFLSISPEEAAKRGGFGGERYENEAMQTRVRELFNTIFDLQRATDIR 184

Query:   222 IIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWS 258
             IIDA +S+ +V + +  +V +++       P   L S
Sbjct:   185 IIDAGKSLAEVSQDILNVVTERIAGVDTASPLGKLTS 221

GO:0006139 "nucleobase-containing compound metabolic process" evidence=RCA

GO:0004798 "thymidylate kinase activity" evidence=IEA;RCA

GO:0005524 "ATP binding" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

GO:0006235 "dTTP biosynthetic process" evidence=IEA

GO:0006227 "dUDP biosynthetic process" evidence=IEA

DICTYBASE|DDB_G0290033 dtymk "thymidylate kinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 83/188 (44%), Positives = 119/188 (63%)

Query:    54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGH-SVELWRFPDRTTSVGQMISAYLSNQSHL 112
             RG  ++ EG+DR GK++Q   L +++  +     +  RFPDRTT +GQ+I+ YL N +++
Sbjct:    18 RGLFILFEGVDRVGKSTQVQSLTNHISNVQKLPTKSLRFPDRTTPIGQIINQYLQNATNM 77

Query:   113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL 172
             DD  +HLLFS+NRWE R  +   L  GT ++VDRYSYSGVA+S+AKGID +WC A E GL
Sbjct:    78 DDRALHLLFSSNRWEARDSILELLNNGTNIVVDRYSYSGVAYSAAKGIDFDWCYACEKGL 137

Query:   173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQ-MLRDSSWKIIDACQSIED 231
               PD + YL +  E A             LEFQ+K+ Q Y+  L D  WKII+A +SI++
Sbjct:   138 PKPDLIFYLSMSSEDATKRGEYGGERYEKLEFQKKIKQIYEEKLVDDQWKIINANRSIDE 197

Query:   232 VEKQLKEI 239
             +  ++  I
Sbjct:   198 ISNEISSI 205

GO:0006233 "dTDP biosynthetic process" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0004798 "thymidylate kinase activity" evidence=IEA;ISS

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

GO:0006261 "DNA-dependent DNA replication" evidence=ISS

GO:0006235 "dTTP biosynthetic process" evidence=IEA;ISS

GO:0006227 "dUDP biosynthetic process" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0009165 "nucleotide biosynthetic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0034299 CG5757 [Drosophila melanogaster (taxid:7227)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 85/189 (44%), Positives = 121/189 (64%)

Query:    54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
             RGAL++ EG DR GKT+Q   L+  L+  G       FP+R++S+GQ+I++YL+N   L 
Sbjct:    20 RGALIIFEGCDRSGKTTQSRLLVELLKSKGIPTLPMNFPERSSSIGQVINSYLTNSKDLP 79

Query:   114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL 173
             D  IHL+FSANRWE  + ++ KL  GTTL+VDRYS+SGVA+S+AKG+D +WC APE GL+
Sbjct:    80 DEVIHLMFSANRWEHINQVKEKLLEGTTLVVDRYSFSGVAYSAAKGLDFDWCYAPERGLI 139

Query:   174 APDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQML--RDSSW-KIIDACQSIE 230
              PD+V YL  PP                +EFQ +VA+ +  +  ++ S+    DA QS+E
Sbjct:   140 KPDAVFYLRAPPNDLTHRGQYGKERYEKVEFQGRVAEVFNRICSKEGSYFHQFDARQSVE 199

Query:   231 DVEKQLKEI 239
             D+  Q+  I
Sbjct:   200 DLHAQIASI 208

GO:0004798 "thymidylate kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.766
4th Layer	2.7.4.9	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
PLN02924	220	PLN02924, PLN02924, thymidylate kinase	1e-146
pfam02223	186	pfam02223, Thymidylate_kin, Thymidylate kinase	5e-49
COG0125	208	COG0125, Tmk, Thymidylate kinase [Nucleotide trans	2e-46
TIGR00041	195	TIGR00041, DTMP_kinase, thymidylate kinase	1e-38
cd01672	200	cd01672, TMPK, Thymidine monophosphate kinase (TMP	6e-30
PRK00698	205	PRK00698, tmk, thymidylate kinase; Validated	6e-29
PRK13975	196	PRK13975, PRK13975, thymidylate kinase; Provisiona	1e-24
PRK13974	212	PRK13974, PRK13974, thymidylate kinase; Provisiona	2e-16
PRK07933	213	PRK07933, PRK07933, thymidylate kinase; Validated	1e-12
PRK13976	209	PRK13976, PRK13976, thymidylate kinase; Provisiona	7e-11
PRK13973	213	PRK13973, PRK13973, thymidylate kinase; Provisiona	1e-10

>gnl|CDD|178512 PLN02924, PLN02924, thymidylate kinase

 Score =  407 bits (1047), Expect = e-146
 Identities = 160/219 (73%), Positives = 189/219 (86%)

Query: 40  MESSSSLRIGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVG 99
             S       +++SRGAL+VLEGLDR GK++QC++L+S+L+GLG + ELWRFPDRTTSVG
Sbjct: 1   FFSMGMETESSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVG 60

Query: 100 QMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKG 159
           QMISAYLSN+S LDD  IHLLFSANRWEKRS+ME KLK+GTTL+VDRYSYSGVAFS+AKG
Sbjct: 61  QMISAYLSNKSQLDDRAIHLLFSANRWEKRSLMERKLKSGTTLVVDRYSYSGVAFSAAKG 120

Query: 160 IDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSS 219
           +D+EWCKAPE+GL APD VLYLDI PE+AAERGGYGGERYE LEFQ+KVA+ +Q LRDSS
Sbjct: 121 LDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYEKLEFQKKVAKRFQTLRDSS 180

Query: 220 WKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWS 258
           WKIIDA QSIE+VEK+++E+VLD V  C  GKP S LWS
Sbjct: 181 WKIIDASQSIEEVEKKIREVVLDTVQRCLAGKPLSRLWS 219

Length = 220

>gnl|CDD|216936 pfam02223, Thymidylate_kin, Thymidylate kinase

 Score =  159 bits (405), Expect = 5e-49
 Identities = 65/186 (34%), Positives = 89/186 (47%), Gaps = 11/186 (5%)

Query: 60  LEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHL 119
           +EGLD  GKT+Q   L   L+  G  V L       T +G+ I   L     L   T  L
Sbjct: 1   IEGLDGAGKTTQAELLKERLKEQGIKVVL-TREPGGTPIGEKIRELLLRNEELSPLTEAL 59

Query: 120 LFSANR-WEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK---GIDIEWCKAPEIGLLAP 175
           LF+A+R       ++  LK G T+I DRY +S +A+  A    G+D+     P++    P
Sbjct: 60  LFAADRIEHLEEKIKPALKQGKTVICDRYLFSSIAYQGAAGGLGLDLVLSLNPDVPGPKP 119

Query: 176 DSVLYLDIPPEKAAERGGYGGERY----EHLEFQRKVAQCYQML--RDSSWKIIDACQSI 229
           D    LD+ PE A +R    GE      E L+F RKV + Y  L   D    IIDA  SI
Sbjct: 120 DLTFLLDVDPEVALKRLRRRGELDEFEFEQLDFLRKVRERYLELAKDDERILIIDASNSI 179

Query: 230 EDVEKQ 235
           E+V ++
Sbjct: 180 EEVHEE 185

Length = 186

>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]

 Score =  153 bits (389), Expect = 2e-46
 Identities = 70/202 (34%), Positives = 101/202 (50%), Gaps = 17/202 (8%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSH-L 112
           +G  +V+EG+D  GKT+Q   L   LE  G  V L R P   T +G+ I   L N    L
Sbjct: 2   KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGG-TPIGEKIRELLLNGEEKL 60

Query: 113 DDHTIHLLFSANRWE--KRSMMEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPE 169
                 LLF+A+R +  +  +  A LK G  +I DRY  S +A+    +G+D++W  A  
Sbjct: 61  SPKAEALLFAADRAQHLEEVIKPA-LKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALN 119

Query: 170 ---IGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLE-----FQRKVAQCYQMLRD---S 218
               G L PD  LYLD+PPE A ER    GE  +  E     F  KV + Y  L      
Sbjct: 120 EFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKEDDEFLEKVREGYLELAAKFPE 179

Query: 219 SWKIIDACQSIEDVEKQLKEIV 240
              +IDA + +E+V +++ +I+
Sbjct: 180 RIIVIDASRPLEEVHEEILKIL 201

Length = 208

>gnl|CDD|161676 TIGR00041, DTMP_kinase, thymidylate kinase

 Score =  132 bits (335), Expect = 1e-38
 Identities = 69/193 (35%), Positives = 97/193 (50%), Gaps = 13/193 (6%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ--SH 111
           RG  +V+EG+D  GKT+Q + L   L+  G+ V L+      T +G+ I   L N+    
Sbjct: 2   RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDV-LFTREPGGTPIGEKIRELLLNENDEP 60

Query: 112 LDDHTIHLLFSANR-WEKRSMMEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKA-- 167
           L D    LLF+A+R       ++  L  G  +I DRY +S +A+   A+GID +      
Sbjct: 61  LTDKAEALLFAADRHEHLEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELN 120

Query: 168 PEIGLLAPDSVLYLDIPPEKAAERGGYGGE----RYEHLEFQRKVAQCYQMLRDSSWKI- 222
            +     PD  +YLDI PE A ER    GE     +E L+F  KV Q Y  L D    I 
Sbjct: 121 EDALGDMPDLTIYLDIDPEVALERLRKRGELDREEFEKLDFFEKVRQRYLELADKEKSIH 180

Query: 223 -IDACQSIEDVEK 234
            IDA  S+E+VE+
Sbjct: 181 VIDATNSVEEVEQ 193

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 195

>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

 Score =  110 bits (278), Expect = 6e-30
 Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 15/200 (7%)

Query: 57  LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSH--LDD 114
            +V EG+D  GKT+    L   LE  G+ V L R P   T +G+ I   L +     +D 
Sbjct: 2   FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPG-GTPIGEAIRELLLDPEDEKMDP 60

Query: 115 HTIHLLFSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSA----KGIDIEWCKAPE 169
               LLF+A+R +    +++  L  G  ++ DR+  S +A+  A        IE      
Sbjct: 61  RAELLLFAADRAQHVEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLA 120

Query: 170 IGLLAPDSVLYLDIPPEKAAER--GGYGGERY--EHLEFQRKVAQCYQML---RDSSWKI 222
            G L PD  + LDI PE    R       +R   E LEF  +V + Y  L         +
Sbjct: 121 TGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEFHERVREGYLELAAQEPERIIV 180

Query: 223 IDACQSIEDVEKQLKEIVLD 242
           IDA Q +E+V  ++ + +L+
Sbjct: 181 IDASQPLEEVLAEILKAILE 200

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP). Length = 200

>gnl|CDD|234814 PRK00698, tmk, thymidylate kinase; Validated

 Score =  108 bits (272), Expect = 6e-29
 Identities = 64/204 (31%), Positives = 97/204 (47%), Gaps = 14/204 (6%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMI-SAYLSNQSHL 112
           RG  + +EG+D  GK++Q   L   LE  G  V   R P   T +G+ +    L     +
Sbjct: 2   RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPG-GTPLGEKLRELLLDPNEEM 60

Query: 113 DDHTIHLLFSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKAPE- 169
           DD T  LLF A R +    +++  L  G  +I DR+  S +A+    +G+DI+   A   
Sbjct: 61  DDKTELLLFYAARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALND 120

Query: 170 --IGLLAPDSVLYLDIPPEKAAERGGYGGE--RYEH--LEFQRKVAQCYQML---RDSSW 220
             +G   PD  LYLD+PPE    R    GE  R E   L+F  +V + Y  L        
Sbjct: 121 FALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQEGLDFFERVREGYLELAEKEPERI 180

Query: 221 KIIDACQSIEDVEKQLKEIVLDQV 244
            +IDA QS+E+V + +  ++   +
Sbjct: 181 VVIDASQSLEEVHEDILAVIKAWL 204

Length = 205

>gnl|CDD|184430 PRK13975, PRK13975, thymidylate kinase; Provisional

 Score = 96.7 bits (241), Expect = 1e-24
 Identities = 60/194 (30%), Positives = 92/194 (47%), Gaps = 17/194 (8%)

Query: 58  VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTI 117
           +V EG+D  GKT+Q   L   L         W        +G++I   LS  S  D  T+
Sbjct: 5   IVFEGIDGSGKTTQAKLLAEKLNAF------WTCEPTDGKIGKLIREILSG-SKCDKETL 57

Query: 118 HLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDS 177
            LLF+A+R E    +E  LK    ++ DRY YS +A+ S +GID ++  +       PD 
Sbjct: 58  ALLFAADRVEHVKEIEEDLKK-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDL 116

Query: 178 VLYLDIPPEKAAER-GGYGGERYEHLEFQRKVAQCYQMLRDSSWK-------IIDAC-QS 228
           V  LD+  E+A +R      E +E  EF +KV + Y  L ++          +ID   +S
Sbjct: 117 VFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYLELANNEKFMPKYGFIVIDTTNKS 176

Query: 229 IEDVEKQLKEIVLD 242
           IE+V  ++   + D
Sbjct: 177 IEEVFNEILNKIKD 190

Length = 196

>gnl|CDD|172477 PRK13974, PRK13974, thymidylate kinase; Provisional

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 66/211 (31%), Positives = 111/211 (52%), Gaps = 28/211 (13%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYL--EGL---GHSVELWRFPDRTTSVGQMISAYLSN 108
           +G  +VLEG+D CGKT+Q   L  +L   GL   G  + + R P  T  +G+ +   L  
Sbjct: 2   KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTL-LGKSLRELL-- 58

Query: 109 QSHLDDHTIH--------LLFSANRWEKRS-MMEAKLKAGTTLIVDRYSYSGVAFSS-AK 158
              LD    +        LL++A+R +  S ++   L+ G  +I DR+S S +A+    +
Sbjct: 59  ---LDTSKDNSPSPLAELLLYAADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGR 115

Query: 159 GIDIEWCKAPE-IGL--LAPDSVLYLDIPPEKA-AERGGYGGERYEH--LEFQRKVAQCY 212
           G+D+E  K  E I    L+PD   +L+I  E++   R     +R E   +EF  +VA+ +
Sbjct: 116 GLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPDRIEAEGIEFLERVAEGF 175

Query: 213 QML-RDSSWKIIDACQSIEDVEKQLKEIVLD 242
            ++  + +WK+I A QSIE +  ++KE +L+
Sbjct: 176 ALIAEERNWKVISADQSIETISNEIKETLLN 206

Length = 212

>gnl|CDD|236133 PRK07933, PRK07933, thymidylate kinase; Validated

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 54/186 (29%), Positives = 78/186 (41%), Gaps = 22/186 (11%)

Query: 57  LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD-DH 115
           L+ +EG+D  GK +    L + LE  G SV    FP    SV   ++A   +  H D   
Sbjct: 2   LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLAD 61

Query: 116 TIH---LLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK------GIDIEWCK 166
           +++    LF+ +R   R  +   L A   +I+DRY  S  A+S+A+      G  + W  
Sbjct: 62  SVYAMATLFALDRAGARDELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVA 121

Query: 167 APEIGLL---APDSVLYLDIPPEKAAERGGYGGE--------RYEH-LEFQRKVAQCYQM 214
             E G L    PD  + LD+P E AAER               YE     Q++    Y  
Sbjct: 122 ELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQDADRARDAYERDDGLQQRTGAVYAE 181

Query: 215 LRDSSW 220
           L    W
Sbjct: 182 LAAQGW 187

Length = 213

>gnl|CDD|237574 PRK13976, PRK13976, thymidylate kinase; Provisional

 Score = 59.7 bits (145), Expect = 7e-11
 Identities = 62/213 (29%), Positives = 91/213 (42%), Gaps = 28/213 (13%)

Query: 58  VVLEGLDRCGKTSQCSRLLSYLEGL--GHSVELWRFPDRTTSVGQMISAYLSNQSHLDDH 115
           +  EG+D  GKT+Q   L  YL  +   ++V L R P   TS  +++   L +  +LD  
Sbjct: 3   ITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPG-GTSFNELVRGLLLSLKNLDKI 61

Query: 116 TIHLLFSANRWEKRSMME---AKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPEIG 171
           +  LLF A R E    ++     L  G  +I DR+  S +A+     G+D+       I 
Sbjct: 62  SELLLFIAMRRE--HFVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSL-----IR 114

Query: 172 LL-------APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML------RDS 218
            L        PD    LDI  E +  R    G  +  LEF  KV + ++ +      R  
Sbjct: 115 DLNDLVVDKYPDITFVLDIDIELSLSRADKNGYEFMDLEFYDKVRKGFREIVIKNPHRCH 174

Query: 219 SWKIIDACQSIEDVEKQLKEIVLDQVTACKKGK 251
               IDA  +IED+     EIV   + A  K K
Sbjct: 175 VITCIDAKDNIEDINSVHLEIV-KLLHAVTKDK 206

Length = 209

>gnl|CDD|184429 PRK13973, PRK13973, thymidylate kinase; Provisional

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 56/203 (27%), Positives = 86/203 (42%), Gaps = 16/203 (7%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
           RG  +  EG +  GK++Q   L   L   G+ V + R P  +     +    LS  + L 
Sbjct: 2   RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELY 61

Query: 114 DHTIH-LLFSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKG-IDIEWCKAPE- 169
              +  LLF+A R +    ++   L  G  ++ DR+  S  A+    G +D     A E 
Sbjct: 62  GPRMEALLFAAARDDHVEEVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALER 121

Query: 170 --IGLLAPDSVLYLDIPPE----KAAERGGYGG-ERYE--HLEFQRKVAQCYQMLRDSS- 219
             I  + PD  L LDIP E    +AA+R G    +R+E   L F  K  + +  +     
Sbjct: 122 VAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEKEDLAFHEKRREAFLQIAAQEP 181

Query: 220 --WKIIDACQSIEDVEKQLKEIV 240
               +IDA  S E V  ++   V
Sbjct: 182 ERCVVIDATASPEAVAAEIWAAV 204

Length = 213

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
PLN02924	220	thymidylate kinase	100.0
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	100.0
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	100.0
PRK13976	209	thymidylate kinase; Provisional	100.0
PRK13973	213	thymidylate kinase; Provisional	100.0
PRK07933	213	thymidylate kinase; Validated	100.0
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	100.0
PRK13974	212	thymidylate kinase; Provisional	100.0
PRK00698	205	tmk thymidylate kinase; Validated	100.0
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.97
PRK13975	196	thymidylate kinase; Provisional	99.97
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.96
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.94
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.87
PHA03132	580	thymidine kinase; Provisional	99.83
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.76
PRK14532	188	adenylate kinase; Provisional	99.74
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	99.73
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.72
PRK13808	333	adenylate kinase; Provisional	99.71
PLN02200	234	adenylate kinase family protein	99.7
PRK14527	191	adenylate kinase; Provisional	99.7
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	99.69
PRK14531	183	adenylate kinase; Provisional	99.69
PLN02842	505	nucleotide kinase	99.68
PRK02496	184	adk adenylate kinase; Provisional	99.67
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	99.67
PRK06762	166	hypothetical protein; Provisional	99.64
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.64
PRK14529	223	adenylate kinase; Provisional	99.63
PLN02674	244	adenylate kinase	99.63
PRK14528	186	adenylate kinase; Provisional	99.59
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.59
PLN02459	261	probable adenylate kinase	99.59
PRK14530	215	adenylate kinase; Provisional	99.58
PRK00279	215	adk adenylate kinase; Reviewed	99.57
PRK08233	182	hypothetical protein; Provisional	99.53
PRK14738	206	gmk guanylate kinase; Provisional	99.52
PRK14526	211	adenylate kinase; Provisional	99.51
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.51
PRK05541	176	adenylylsulfate kinase; Provisional	99.51
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.5
PTZ00088	229	adenylate kinase 1; Provisional	99.47
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.46
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.42
PRK03839	180	putative kinase; Provisional	99.41
PRK04040	188	adenylate kinase; Provisional	99.4
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.39
PRK03731	171	aroL shikimate kinase II; Reviewed	99.38
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.38
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.37
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.36
PRK01184	184	hypothetical protein; Provisional	99.34
PRK13946	184	shikimate kinase; Provisional	99.33
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.33
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.32
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.32
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.3
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.29
PRK00131	175	aroK shikimate kinase; Reviewed	99.27
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.26
PRK13947	171	shikimate kinase; Provisional	99.26
PRK04182	180	cytidylate kinase; Provisional	99.26
PHA02530	300	pseT polynucleotide kinase; Provisional	99.26
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.25
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.25
PRK06217	183	hypothetical protein; Validated	99.25
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.23
PRK13948	182	shikimate kinase; Provisional	99.23
PRK05057	172	aroK shikimate kinase I; Reviewed	99.21
PRK09825	176	idnK D-gluconate kinase; Provisional	99.21
PRK00889	175	adenylylsulfate kinase; Provisional	99.19
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.18
PRK03846	198	adenylylsulfate kinase; Provisional	99.18
PRK08356	195	hypothetical protein; Provisional	99.17
PRK14737	186	gmk guanylate kinase; Provisional	99.16
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	99.16
PRK00300	205	gmk guanylate kinase; Provisional	99.15
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	99.15
PHA03136	378	thymidine kinase; Provisional	99.14
PRK13949	169	shikimate kinase; Provisional	99.14
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.14
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	99.13
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.13
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.12
PRK00625	173	shikimate kinase; Provisional	99.12
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.11
PF01712	146	dNK: Deoxynucleoside kinase; InterPro: IPR002624 T	99.1
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.1
PRK11545	163	gntK gluconate kinase 1; Provisional	99.09
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.09
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.08
COG3709	192	Uncharacterized component of phosphonate metabolis	99.07
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.07
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.07
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.07
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.06
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	99.04
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	99.03
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.02
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.01
PLN02422	232	dephospho-CoA kinase	99.0
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	98.99
PLN02199	303	shikimate kinase	98.99
PRK14733	204	coaE dephospho-CoA kinase; Provisional	98.98
PTZ00451	244	dephospho-CoA kinase; Provisional	98.97
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.97
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	98.96
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.96
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.95
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	98.95
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	98.93
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.93
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	98.91
PRK05480	209	uridine/cytidine kinase; Provisional	98.89
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.88
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	98.87
PRK12338	319	hypothetical protein; Provisional	98.87
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.85
PRK08118	167	topology modulation protein; Reviewed	98.85
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.85
KOG3062	281	consensus RNA polymerase II elongator associated p	98.84
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	98.84
PLN02772	398	guanylate kinase	98.83
PRK00023	225	cmk cytidylate kinase; Provisional	98.83
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	98.83
PRK08099	399	bifunctional DNA-binding transcriptional repressor	98.78
PRK06696	223	uridine kinase; Validated	98.78
PRK12339	197	2-phosphoglycerate kinase; Provisional	98.77
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.76
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	98.75
PRK07667	193	uridine kinase; Provisional	98.74
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.74
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	98.72
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.72
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	98.72
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	98.71
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.71
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	98.67
COG0645	170	Predicted kinase [General function prediction only	98.66
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	98.66
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.65
PHA03134	340	thymidine kinase; Provisional	98.61
PHA03135	343	thymidine kinase; Provisional	98.6
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	98.6
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.59
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.56
COG2326	270	Uncharacterized conserved protein [Function unknow	98.55
PRK06761	282	hypothetical protein; Provisional	98.54
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.54
PRK07261	171	topology modulation protein; Provisional	98.5
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.47
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	98.45
COG3911	183	Predicted ATPase [General function prediction only	98.43
PTZ00301	210	uridine kinase; Provisional	98.42
PRK06547	172	hypothetical protein; Provisional	98.42
COG4639	168	Predicted kinase [General function prediction only	98.37
PHA03138	340	thymidine kinase; Provisional	98.36
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	98.34
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	98.33
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.32
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.28
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.22
KOG3308	225	consensus Uncharacterized protein of the uridine k	98.21
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.21
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.18
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.16
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.16
PRK05439	311	pantothenate kinase; Provisional	98.12
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.11
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	98.1
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	98.1
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	98.09
PHA03133	368	thymidine kinase; Provisional	98.06
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.99
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.9
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	97.87
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	97.78
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.76
PF00693	281	Herpes_TK: Thymidine kinase from herpesvirus; Inte	97.76
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	97.74
PLN02348	395	phosphoribulokinase	97.74
PRK15453	290	phosphoribulokinase; Provisional	97.73
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.72
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.66
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.59
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.58
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	97.54
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.53
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	97.52
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	97.52
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.51
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.51
KOG1533	290	consensus Predicted GTPase [General function predi	97.47
smart00382	148	AAA ATPases associated with a variety of cellular	97.45
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.44
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.43
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.43
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.43
PRK14974	336	cell division protein FtsY; Provisional	97.38
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	97.38
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.35
PF00004	132	AAA: ATPase family associated with various cellula	97.33
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.32
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.3
PRK13768	253	GTPase; Provisional	97.3
cd03116	159	MobB Molybdenum is an essential trace element in t	97.3
COG1660	286	Predicted P-loop-containing kinase [General functi	97.28
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.26
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.25
PRK10416	318	signal recognition particle-docking protein FtsY;	97.25
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.25
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.24
PF13245	76	AAA_19: Part of AAA domain	97.23
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.23
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	97.22
PRK07429	327	phosphoribulokinase; Provisional	97.17
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.14
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	97.14
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.13
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.12
PRK04296	190	thymidine kinase; Provisional	97.11
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.09
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.09
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.08
PLN02796	347	D-glycerate 3-kinase	97.08
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.03
COG1855	604	ATPase (PilT family) [General function prediction	97.03
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	97.03
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	96.98
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	96.97
PLN03046	460	D-glycerate 3-kinase; Provisional	96.96
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.95
PRK10867	433	signal recognition particle protein; Provisional	96.95
PF05729	166	NACHT: NACHT domain	96.95
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.94
PLN02840	421	tRNA dimethylallyltransferase	96.93
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	96.93
PLN02165	334	adenylate isopentenyltransferase	96.91
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.91
cd03114	148	ArgK-like The function of this protein family is u	96.91
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.91
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	96.9
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.89
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.88
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	96.88
KOG0781	587	consensus Signal recognition particle receptor, al	96.87
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.85
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.85
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.85
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.85
PHA00729	226	NTP-binding motif containing protein	96.83
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.83
PRK06851	367	hypothetical protein; Provisional	96.83
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	96.82
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.79
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.79
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.78
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.78
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.78
PRK13695	174	putative NTPase; Provisional	96.78
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.77
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.75
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.75
PRK09183	259	transposase/IS protein; Provisional	96.75
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.75
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.75
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.75
CHL00181	287	cbbX CbbX; Provisional	96.74
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	96.68
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.67
TIGR00959	428	ffh signal recognition particle protein. This mode	96.67
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.66
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.66
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.66
cd02034	116	CooC The accessory protein CooC, which contains a	96.62
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	96.61
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	96.61
PF13173	128	AAA_14: AAA domain	96.6
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	96.59
PLN02748	468	tRNA dimethylallyltransferase	96.58
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.58
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.58
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.57
PRK06851	367	hypothetical protein; Provisional	96.57
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.57
PRK12377	248	putative replication protein; Provisional	96.56
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.56
PRK08084	235	DNA replication initiation factor; Provisional	96.54
PRK13764	602	ATPase; Provisional	96.54
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.51
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.5
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.5
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	96.49
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	96.49
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.48
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.48
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.48
PRK10536	262	hypothetical protein; Provisional	96.47
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.47
PRK08116	268	hypothetical protein; Validated	96.46
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.46
PRK05973	237	replicative DNA helicase; Provisional	96.45
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	96.44
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.44
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.44
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.43
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.43
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.43
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.42
PRK06893	229	DNA replication initiation factor; Validated	96.42
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.42
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.42
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.41
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	96.41
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.4
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.4
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	96.39
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.39
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.39
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	96.38
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	96.38
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.38
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.37
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.37
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.37
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.37
PRK14491	597	putative bifunctional molybdopterin-guanine dinucl	96.37
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.36
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.36
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.36
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.36
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.35
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.35
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	96.35
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.35
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.35
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.34
cd01128	249	rho_factor Transcription termination factor rho is	96.34
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.34
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.33
PRK06526	254	transposase; Provisional	96.32
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.32
PRK08727	233	hypothetical protein; Validated	96.32
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.31
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.31
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.31
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	96.3
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	96.3
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.3
cd03246	173	ABCC_Protease_Secretion This family represents the	96.3
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.3
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.29
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.29
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	96.27
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.27
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.27
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.27
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.26
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.26
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	96.26
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.26
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.25
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	96.23
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.23
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	96.23
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.23
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.23
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.23
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	96.23
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	96.23
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.23
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.22
COG4240	300	Predicted kinase [General function prediction only	96.22
PRK06067	234	flagellar accessory protein FlaH; Validated	96.22
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	96.22
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	96.21
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.21
PRK08181	269	transposase; Validated	96.21
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.21
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	96.2
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	96.19
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.19
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.19
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.19
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	96.18
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	96.18
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	96.18
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	96.18
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.18
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	96.18
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	96.17
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	96.17
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	96.17
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.17
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.17
PRK15455	644	PrkA family serine protein kinase; Provisional	96.16
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	96.16
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	96.16
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	96.16
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	96.15
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	96.15
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.15
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	96.15
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.14
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.14
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	96.14
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	96.13
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.13
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	96.13
PRK10908	222	cell division protein FtsE; Provisional	96.13
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	96.12
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	96.12
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	96.12
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	96.11
PRK09169	2316	hypothetical protein; Validated	96.11
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	96.11
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	96.11
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	96.1
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	96.1
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.1
PLN02318	656	phosphoribulokinase/uridine kinase	96.1
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	96.1
PRK07952	244	DNA replication protein DnaC; Validated	96.1
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.09
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	96.09
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	96.09
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	96.08
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	96.08
COG2884	223	FtsE Predicted ATPase involved in cell division [C	96.08
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	96.07
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	96.07
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	96.07
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	96.07
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	96.06
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	96.06
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	96.06
cd03234	226	ABCG_White The White subfamily represents ABC tran	96.05
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	96.05
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	96.04
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	96.04
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	96.04
PRK06921	266	hypothetical protein; Provisional	96.03
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	96.03
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	96.03
PF07726	131	AAA_3: ATPase family associated with various cellu	96.03
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	96.03
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	96.02
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	96.02
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	96.01
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	96.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	96.0
COG2256	436	MGS1 ATPase related to the helicase subunit of the	96.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	96.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	95.99
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	95.99
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	95.98
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	95.98
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	95.98
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	95.98
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	95.98
COG1484	254	DnaC DNA replication protein [DNA replication, rec	95.97
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	95.97
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	95.97
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	95.96
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	95.96
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	95.96
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	95.96
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.96
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	95.95
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	95.95
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	95.95
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	95.94
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	95.94
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	95.94
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	95.94
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	95.94
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	95.94
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	95.94
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	95.94
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	95.93
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	95.93
PRK08939	306	primosomal protein DnaI; Reviewed	95.93
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	95.93
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	95.93
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	95.92
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	95.92
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	95.92
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	95.92
PRK04328	249	hypothetical protein; Provisional	95.91
PLN03025	319	replication factor C subunit; Provisional	95.91
PRK10646	153	ADP-binding protein; Provisional	95.91
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	95.91
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	95.91
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	95.91
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.91
PRK13833	323	conjugal transfer protein TrbB; Provisional	95.91
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	95.9
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	95.9
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	95.9

>PLN02924 thymidylate kinase

Probab=100.00  E-value=4.1e-44  Score=307.52  Aligned_cols=209  Identities=76%  Similarity=1.270  Sum_probs=194.2

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      +..+|++|+|||+||||||||++.|+++|...|+.++.+++|..++++|+.|++++.+...+++.+..++|+++|+++..
T Consensus        12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~   91 (220)
T PLN02924         12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRS   91 (220)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            34679999999999999999999999999999999998999987789999999998876678899999999999999888


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHH
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQ  210 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~  210 (259)
                      .++|++++|.+||+|||++|+++|+.++|++.+|+..++..++.||++||||+||+++.+|...+.+++|..+|++++++
T Consensus        92 ~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~~~E~~~~~~rv~~  171 (220)
T PLN02924         92 LMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYEKLEFQKKVAK  171 (220)
T ss_pred             HHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccccHHHHHHHHH
Confidence            89999999999999999999999998888899999988888899999999999999999998765677888999999999


Q ss_pred             HHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCC
Q 025041          211 CYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWSC  259 (259)
Q Consensus       211 ~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~~~~~~~~~~  259 (259)
                      .|.++++..|++||++.++|+|.++|.+.|...+..+..||||+.||+.
T Consensus       172 ~Y~~la~~~~~vIDa~~sieeV~~~I~~~I~~~l~~~~~~~~~~~~~~~  220 (220)
T PLN02924        172 RFQTLRDSSWKIIDASQSIEEVEKKIREVVLDTVQRCLAGKPLSRLWSS  220 (220)
T ss_pred             HHHHHhhcCEEEECCCCCHHHHHHHHHHHHHHHHHhccccCcHHHhcCC
Confidence            9999887789999999999999999999999999999999999999973

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.5e-39  Score=275.95  Aligned_cols=192  Identities=35%  Similarity=0.557  Sum_probs=173.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC-CCCCHHHHHHHHHHhHHHHH-HH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ-SHLDDHTIHLLFSANRWEKR-SM  131 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~-~~~~~~~~~ll~~a~r~~~~-~~  131 (259)
                      +|++|+|||+|||||||+++.|+++|...|++|+.+++|+ ++++|+.||+++.++ ..+++.+++++|+++|+++. ..
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~-~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~   80 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPG-GTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEV   80 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999 599999999998876 57899999999999999986 78


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhhccCC---CCCEEEEEeCCHHHHHhhcCCCC---CCcchH--
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPEIGLL---APDSVLYLDIPPEKAAERGGYGG---ERYEHL--  202 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~~~~~---~PdlvI~Ld~~~e~~~~R~~~R~---d~~e~~--  202 (259)
                      ++|++..|.+||+|||++|++|||+ ++|++.+|+..++...+   .||++||||+||+++++|+..|+   +++|..  
T Consensus        81 i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~  160 (208)
T COG0125          81 IKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKEDD  160 (208)
T ss_pred             HHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHH
Confidence            8999999999999999999999996 68999999988765555   99999999999999999998763   567653  


Q ss_pred             HHHHHHHHHHHhhhC-C--CeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 025041          203 EFQRKVAQCYQMLRD-S--SWKIIDACQSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       203 ~~~~rv~~~y~~l~~-~--~~~vIDa~~s~eev~~~I~~~i~~~l~~  246 (259)
                      ++++++++.|.++++ .  .+++||++.++|+|.++|.+.+.+.+..
T Consensus       161 ~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~~  207 (208)
T COG0125         161 EFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERLGL  207 (208)
T ss_pred             HHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHhhcc
Confidence            589999999999875 2  4899999999999999999999887753

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=3.5e-38  Score=256.98  Aligned_cols=204  Identities=53%  Similarity=0.937  Sum_probs=187.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      +.+|.+|+++|.|+||||||+..|.+.+...+.+...+++|.+.+.+|+.|..++.+..+++..+.+++|+|+||++...
T Consensus         2 ~~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~~   81 (208)
T KOG3327|consen    2 MIRGALIVLEGLDRSGKSTQCGKLVESLIPGLDPAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVSL   81 (208)
T ss_pred             CCCccEEeeeccccCCceeehhHHHHHHHhccChHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHHH
Confidence            57899999999999999999999999998777777888999999999999999999887899999999999999999989


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC  211 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~  211 (259)
                      |+..+.+|.++|+|||.+|+++|..++|++.+|+.++..++++||+++||+++|+.+.+|-+.+.++||..+||+++...
T Consensus        82 i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rggfG~Erye~v~fqekv~~~  161 (208)
T KOG3327|consen   82 IKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGGFGEERYETVAFQEKVLVF  161 (208)
T ss_pred             HHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcCcchhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988888888899999999999999


Q ss_pred             HHhhh---CCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCC
Q 025041          212 YQMLR---DSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLL  256 (259)
Q Consensus       212 y~~l~---~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~~~~~~~  256 (259)
                      |..+.   +..|+++|++.++|+|.++|..++++.+ .++.++||..|
T Consensus       162 ~q~l~r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~-~~~~~~~l~~l  208 (208)
T KOG3327|consen  162 FQKLLRKEDLNWHVVDASKSVEKVHQQVRSLVENVL-SEPIEKPLDEL  208 (208)
T ss_pred             HHHHHhccCCCeEEEecCccHHHHHHHHHHHHHHhc-cCCCCCCcccC
Confidence            99875   3689999999999999999999777665 45677887653

>PRK13976 thymidylate kinase; Provisional

Probab=100.00  E-value=1.1e-35  Score=253.58  Aligned_cols=190  Identities=27%  Similarity=0.380  Sum_probs=164.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhC-C-CeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-HHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGL-G-HSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-SMM  132 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~-g-~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-~~i  132 (259)
                      ++|+|||+||||||||++.|++.|... | +.+..+++|+ ++++|+.|++++.+...+++.+..++|+++|+++. +.+
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~-~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I   79 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPG-GTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVI   79 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCC-CCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999886 6 5888889998 78899999999876545888999999999999986 568


Q ss_pred             HHHHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhhc--cCCCCCEEEEEeCCHHHHHhhcCCCCCCcc--hHHHHHH
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPEI--GLLAPDSVLYLDIPPEKAAERGGYGGERYE--HLEFQRK  207 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~~--~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e--~~~~~~r  207 (259)
                      +|++++|.+||+|||++|+++||+ ..|.+.+|+..++.  ..+.||++||||+||+++.+|+..  +++|  ..+|+++
T Consensus        80 ~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~--~~~e~~~~~~l~~  157 (209)
T PRK13976         80 LPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADK--NGYEFMDLEFYDK  157 (209)
T ss_pred             HHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcc--cchhcccHHHHHH
Confidence            999999999999999999999998 46788888877653  346899999999999999999864  4455  5799999


Q ss_pred             HHHHHHhhhC---CCeEEEcC---CCC---HHHHHHHHHHHHHHHHhhhh
Q 025041          208 VAQCYQMLRD---SSWKIIDA---CQS---IEDVEKQLKEIVLDQVTACK  248 (259)
Q Consensus       208 v~~~y~~l~~---~~~~vIDa---~~s---~eev~~~I~~~i~~~l~~~~  248 (259)
                      +++.|.+++.   ..+++||+   +++   +|+|.++|.+.|.+.++++.
T Consensus       158 v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~~~~  207 (209)
T PRK13976        158 VRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTKDKL  207 (209)
T ss_pred             HHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence            9999999864   26889998   445   99999999999999997654

>PRK13973 thymidylate kinase; Provisional

Probab=100.00  E-value=5.8e-35  Score=249.92  Aligned_cols=191  Identities=27%  Similarity=0.355  Sum_probs=166.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC--CCCCHHHHHHHHHHhHHHHH-H
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ--SHLDDHTIHLLFSANRWEKR-S  130 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~--~~~~~~~~~ll~~a~r~~~~-~  130 (259)
                      +|++|+|||+||||||||++.|+++|...|+.++.+++|+ +++.|+.||+++...  ..+++.+..++|+++|+++. +
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~-~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~   80 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPG-GSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEE   80 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCC-CCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999998 678899999987753  35788889999999999986 5


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcC-CCCCHHHHHhhhc---cCCCCCEEEEEeCCHHHHHhhcCCCC-----CCcc-
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKAPEI---GLLAPDSVLYLDIPPEKAAERGGYGG-----ERYE-  200 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~~~~---~~~~PdlvI~Ld~~~e~~~~R~~~R~-----d~~e-  200 (259)
                      .+.|++.+|.+||+|||++|++||++. ++++.+|+..++.   ..+.||++||||+|++++.+|+..|.     ++++ 
T Consensus        81 ~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~  160 (213)
T PRK13973         81 VIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEK  160 (213)
T ss_pred             HHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhh
Confidence            689999999999999999999999985 4677778776653   45789999999999999999987663     3554 


Q ss_pred             -hHHHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHHh
Q 025041          201 -HLEFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQVT  245 (259)
Q Consensus       201 -~~~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l~  245 (259)
                       ..++++++.+.|.++.+   ..+++||+++++|+|.++|.+.+...+.
T Consensus       161 ~~~~~~~~~~~~y~~l~~~~~~~~~~Ida~~~~e~V~~~I~~~i~~~~~  209 (213)
T PRK13973        161 EDLAFHEKRREAFLQIAAQEPERCVVIDATASPEAVAAEIWAAVDQRLL  209 (213)
T ss_pred             chHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence             46899999999998764   3689999999999999999999998776

>PRK07933 thymidylate kinase; Validated

Probab=100.00  E-value=2.1e-35  Score=252.70  Aligned_cols=185  Identities=28%  Similarity=0.430  Sum_probs=157.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCC-CChHHHHHHHHHhCCC---CCCHHHHHHHHHHhHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDR-TTSVGQMISAYLSNQS---HLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~-~~~~g~~ir~~l~~~~---~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      ++|+|||+||||||||++.|+++|...|+.|..+++|.. +++.|+.+++++.+..   ..++.+.+++|+++|+++...
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~~   80 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGARDE   80 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHHH
Confidence            589999999999999999999999999999999999953 5678999999887531   236788889999999998878


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCC-C-----CCHHHHHhhhc---cCCCCCEEEEEeCCHHHHHhhcCCCC------
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAK-G-----IDIEWCKAPEI---GLLAPDSVLYLDIPPEKAAERGGYGG------  196 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~-g-----l~~~~~~~~~~---~~~~PdlvI~Ld~~~e~~~~R~~~R~------  196 (259)
                      +.|++++|.+||+|||++|++||++++ +     ....|+..++.   ..+.||++||||+||+++.+|+..|+      
T Consensus        81 I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~  160 (213)
T PRK07933         81 LAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQDADR  160 (213)
T ss_pred             HHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccccCCc
Confidence            999999999999999999999999754 1     23567766653   45789999999999999999987664      


Q ss_pred             --CCcch-HHHHHHHHHHHHhhhC----CCeEEEcCCCCHHHHHHHHHHHH
Q 025041          197 --ERYEH-LEFQRKVAQCYQMLRD----SSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       197 --d~~e~-~~~~~rv~~~y~~l~~----~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                        |++|. .+|++++++.|.+++.    ..|++||+++++|+|.++|.+.|
T Consensus       161 ~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~  211 (213)
T PRK07933        161 ARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL  211 (213)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence              45764 7999999999998763    27899999999999999999876

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=100.00  E-value=1.1e-33  Score=236.50  Aligned_cols=176  Identities=38%  Similarity=0.605  Sum_probs=150.9

Q ss_pred             EEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-HHHHHHHhc
Q 025041           60 LEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-SMMEAKLKA  138 (259)
Q Consensus        60 ieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-~~i~~~l~~  138 (259)
                      |||+||||||||++.|+++|...|+.+....+|. ++++|+.|++++......++.+..++|+++|..+. ..+.+++++
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~-~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~   79 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPG-STPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKR   79 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESST-SSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCC-CChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            7999999999999999999999999855555554 78999999999986667888899999999996654 688999999


Q ss_pred             CCeEEEcccccchhhhhcCCC-CCHHHHHhhhccCC--CCCEEEEEeCCHHHHHhhcCCCCC----CcchHHHHHHHHHH
Q 025041          139 GTTLIVDRYSYSGVAFSSAKG-IDIEWCKAPEIGLL--APDSVLYLDIPPEKAAERGGYGGE----RYEHLEFQRKVAQC  211 (259)
Q Consensus       139 g~~VI~DR~~~s~~ay~~~~g-l~~~~~~~~~~~~~--~PdlvI~Ld~~~e~~~~R~~~R~d----~~e~~~~~~rv~~~  211 (259)
                      |.+||+|||++|+++|+.+.+ .+.+|+..+...++  .||++|||++||+++.+|+..|+.    ..+..++++++++.
T Consensus        80 g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~~  159 (186)
T PF02223_consen   80 GKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVREA  159 (186)
T ss_dssp             TSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHHH
T ss_pred             CCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHHH
Confidence            999999999999999998754 67788877765544  999999999999999999987655    23457999999999


Q ss_pred             HHhhh--CCCeEEEcCCCCHHHHHHHH
Q 025041          212 YQMLR--DSSWKIIDACQSIEDVEKQL  236 (259)
Q Consensus       212 y~~l~--~~~~~vIDa~~s~eev~~~I  236 (259)
                      |.++.  .++|++||++.++|+|+++|
T Consensus       160 y~~l~~~~~~~~iid~~~~~e~v~~~I  186 (186)
T PF02223_consen  160 YLELAKDPNNWVIIDASRSIEEVHEQI  186 (186)
T ss_dssp             HHHHHHTTTTEEEEETTS-HHHHHHHH
T ss_pred             HHHHHcCCCCEEEEECCCCHHHHHhhC
Confidence            99887  47999999999999999987

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK13974 thymidylate kinase; Provisional

Probab=100.00  E-value=9.6e-33  Score=236.03  Aligned_cols=193  Identities=31%  Similarity=0.539  Sum_probs=164.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCC-----eEEEEecCCCCChHHHHHHHHHhCC---CCCCHHHHHHHHHHhH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGH-----SVELWRFPDRTTSVGQMISAYLSNQ---SHLDDHTIHLLFSANR  125 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~-----~v~~~~~p~~~~~~g~~ir~~l~~~---~~~~~~~~~ll~~a~r  125 (259)
                      +|.+|+|+|+||||||||++.|++.|...|.     .++.+++|. ++++|+.|++++.+.   ..+++.+..++|+++|
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~-~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr   80 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPG-GTLLGKSLRELLLDTSKDNSPSPLAELLLYAADR   80 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCC-CCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHH
Confidence            5899999999999999999999999987664     667788887 789999999998643   2467888899999999


Q ss_pred             HHHH-HHHHHHHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhhc---cCCCCCEEEEEeCCHHHHHhhcCCCC-CCc
Q 025041          126 WEKR-SMMEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPEI---GLLAPDSVLYLDIPPEKAAERGGYGG-ERY  199 (259)
Q Consensus       126 ~~~~-~~i~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~~---~~~~PdlvI~Ld~~~e~~~~R~~~R~-d~~  199 (259)
                      ++++ ..++|++..|.+||+|||++|+++|++ .++++.+|+..++.   ..+.||++||||+|++++.+|+..|. |++
T Consensus        81 ~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD~~  160 (212)
T PRK13974         81 AQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPDRI  160 (212)
T ss_pred             HHHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccCch
Confidence            9997 467999999999999999999999987 57888888877753   34579999999999999999988764 445


Q ss_pred             ch--HHHHHHHHHHHHhhhC-CCeEEEcCCCCHHHHHHHHHHHHHHHHhhh
Q 025041          200 EH--LEFQRKVAQCYQMLRD-SSWKIIDACQSIEDVEKQLKEIVLDQVTAC  247 (259)
Q Consensus       200 e~--~~~~~rv~~~y~~l~~-~~~~vIDa~~s~eev~~~I~~~i~~~l~~~  247 (259)
                      +.  .+|++++...|..+.+ ..|++||+++++++|.++|.+.|...+..+
T Consensus       161 e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~~~~~  211 (212)
T PRK13974        161 EAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNNFSNK  211 (212)
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHHHhhc
Confidence            53  5899999999988764 578999999999999999999999876654

>PRK00698 tmk thymidylate kinase; Validated

Probab=100.00  E-value=4.2e-31  Score=223.31  Aligned_cols=190  Identities=33%  Similarity=0.505  Sum_probs=160.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhC-CCCCCHHHHHHHHHHhHHHHH-HH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSN-QSHLDDHTIHLLFSANRWEKR-SM  131 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~-~~~~~~~~~~ll~~a~r~~~~-~~  131 (259)
                      +|++|+|+|+|||||||+++.|++.|...|+.+...++|. +++.|+.++.++.. ...+.+.+..++|+++|+++. ..
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   80 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPG-GTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEV   80 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCC-CChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999998888888888887 67889999998874 345677777888888998875 56


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcC-CCCCHHHHHhhhcc---CCCCCEEEEEeCCHHHHHhhcCCCC--CCcc--hHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKAPEIG---LLAPDSVLYLDIPPEKAAERGGYGG--ERYE--HLE  203 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~~~~~---~~~PdlvI~Ld~~~e~~~~R~~~R~--d~~e--~~~  203 (259)
                      +.+.+.+|.+||+|||++|.++|+++ .+.+.+|+..+...   .+.||++|||++|++++.+|+..|+  ++++  ..+
T Consensus        81 i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~  160 (205)
T PRK00698         81 IKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQEGLD  160 (205)
T ss_pred             HHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHH
Confidence            78888899999999999999999875 36777888776533   3789999999999999999998775  3343  468


Q ss_pred             HHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          204 FQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       204 ~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                      |++++...|..+.+   ..+++||++++++++.++|.+.|.+.+
T Consensus       161 ~~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~~~  204 (205)
T PRK00698        161 FFERVREGYLELAEKEPERIVVIDASQSLEEVHEDILAVIKAWL  204 (205)
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence            89999888988753   468999999999999999999998765

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.97  E-value=4.4e-30  Score=215.88  Aligned_cols=182  Identities=40%  Similarity=0.601  Sum_probs=152.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC--CCCCHHHHHHHHHHhHHHHH-H
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ--SHLDDHTIHLLFSANRWEKR-S  130 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~--~~~~~~~~~ll~~a~r~~~~-~  130 (259)
                      +|++|+|+|+|||||||+++.|+++|...|+.+....+|. ++++|+.+++++...  ..+.+.+..++|+++|.+.. +
T Consensus         2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~   80 (195)
T TIGR00041         2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPG-GTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLED   80 (195)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999988788886 678899999985532  34566677788888887765 5


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhhccCCC--CCEEEEEeCCHHHHHhhcCCCCC----CcchHH
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPEIGLLA--PDSVLYLDIPPEKAAERGGYGGE----RYEHLE  203 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~~~~~~--PdlvI~Ld~~~e~~~~R~~~R~d----~~e~~~  203 (259)
                      .+.+.+.+|.+||+|||++|.++|+. .++.+.+|+..+...++.  ||++|||++|++++.+|+..|+.    .++..+
T Consensus        81 ~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~~~~~~~~~  160 (195)
T TIGR00041        81 KIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDREEFEKLD  160 (195)
T ss_pred             HHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcchHHHHHHH
Confidence            67888889999999999999999986 467777888777655544  99999999999999999887643    134578


Q ss_pred             HHHHHHHHHHhhhC--CCeEEEcCCCCHHHHHHHH
Q 025041          204 FQRKVAQCYQMLRD--SSWKIIDACQSIEDVEKQL  236 (259)
Q Consensus       204 ~~~rv~~~y~~l~~--~~~~vIDa~~s~eev~~~I  236 (259)
                      +++++.+.|.++++  .++++||+++++|+|+++|
T Consensus       161 ~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~~i  195 (195)
T TIGR00041       161 FFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI  195 (195)
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence            89999999998874  5799999999999999875

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK13975 thymidylate kinase; Provisional

Probab=99.97  E-value=1.8e-28  Score=206.28  Aligned_cols=184  Identities=32%  Similarity=0.488  Sum_probs=152.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEA  134 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~  134 (259)
                      |++|+|+|+|||||||+++.|+++|+..     ...+|. ++.+|+.+++++... .+++.+..++|+++|++++..+.+
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~-----~~~~~~-~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~~i~~   74 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAF-----WTCEPT-DGKIGKLIREILSGS-KCDKETLALLFAADRVEHVKEIEE   74 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC-----eeECCC-CChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999642     234554 567899999987754 567778888999999988777777


Q ss_pred             HHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC-CCcchHHHHHHHHHHHH
Q 025041          135 KLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG-ERYEHLEFQRKVAQCYQ  213 (259)
Q Consensus       135 ~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~-d~~e~~~~~~rv~~~y~  213 (259)
                      .+.. ..||+|||++|+++|+.+.|++.+|+..++...+.||++|||++|++++.+|+..|+ +.++..++++++.+.|.
T Consensus        75 ~~~~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~  153 (196)
T PRK13975         75 DLKK-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYL  153 (196)
T ss_pred             HHcC-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence            7765 689999999999999987788888877666666789999999999999999998774 23556788889999898


Q ss_pred             hhhC-------CCeEEEcCC-CCHHHHHHHHHHHHHHHHhh
Q 025041          214 MLRD-------SSWKIIDAC-QSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       214 ~l~~-------~~~~vIDa~-~s~eev~~~I~~~i~~~l~~  246 (259)
                      ++..       ..+++||++ +++++++++|.+.|...+++
T Consensus       154 ~~~~~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~~~  194 (196)
T PRK13975        154 ELANNEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKIPD  194 (196)
T ss_pred             HHHhhcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhCCc
Confidence            7642       358999985 89999999999999887764

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.96  E-value=8.8e-28  Score=201.16  Aligned_cols=185  Identities=32%  Similarity=0.470  Sum_probs=150.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC--CCCCHHHHHHHHHHhHHHHH-HHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ--SHLDDHTIHLLFSANRWEKR-SMM  132 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~--~~~~~~~~~ll~~a~r~~~~-~~i  132 (259)
                      ++|+|+|+|||||||+++.|++.|...|+.+....+|. ++..|+.+++++...  ..+.+....++++++|+... +.+
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   79 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPG-GTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVI   79 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999998888887 556788999987754  24566777778888888775 556


Q ss_pred             HHHHhcCCeEEEcccccchhhhhcC-CCCCHHHHHh---hhccCCCCCEEEEEeCCHHHHHhhcCCCCCCc----chHHH
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKA---PEIGLLAPDSVLYLDIPPEKAAERGGYGGERY----EHLEF  204 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~---~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~----e~~~~  204 (259)
                      .+.+..|.+||+|||++++++|+.. .+...+|+..   +....+.||++|||++|++++.+|+..|++..    +..+|
T Consensus        80 ~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~  159 (200)
T cd01672          80 KPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEF  159 (200)
T ss_pred             HHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHHH
Confidence            7778889999999999999999874 3344444443   34455789999999999999999998775432    23688


Q ss_pred             HHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          205 QRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       205 ~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      ++++...|..+..   .++++||++.++|++.++|.+.|.
T Consensus       160 ~~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~  199 (200)
T cd01672         160 HERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL  199 (200)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence            9999999988654   468999999999999999998875

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.94  E-value=1.5e-25  Score=192.58  Aligned_cols=180  Identities=17%  Similarity=0.242  Sum_probs=130.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCe-----EEEEecCCCCChHHHH------HHHHHhCCC---CCCHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHS-----VELWRFPDRTTSVGQM------ISAYLSNQS---HLDDHTIHLLFS  122 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~-----v~~~~~p~~~~~~g~~------ir~~l~~~~---~~~~~~~~ll~~  122 (259)
                      +|+|||++|||||||++.|+++|...++.     +....+|. ++.+++.      +++++.++.   .++..+..+++ 
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~-   78 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGD-GKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMY-   78 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhcccccccc-ccccccccCCCcCHHHHhcCCcccCCcchHHHHHHH-
Confidence            59999999999999999999999653221     11123333 3334432      666766554   34444444444 


Q ss_pred             HhHHHHH-HHHHHHHhcCCeEEEcccccchhhhhcC---CCC----CHHHHHhhh----ccCCCCCEEEEEeCCHHHHHh
Q 025041          123 ANRWEKR-SMMEAKLKAGTTLIVDRYSYSGVAFSSA---KGI----DIEWCKAPE----IGLLAPDSVLYLDIPPEKAAE  190 (259)
Q Consensus       123 a~r~~~~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~---~gl----~~~~~~~~~----~~~~~PdlvI~Ld~~~e~~~~  190 (259)
                      ++|+++. ..+.+.+..|.+||+|||++|+++|+.+   .|.    +.+|+..+.    ..++.||++|||++||+++.+
T Consensus        79 ~~R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~  158 (219)
T cd02030          79 SSRLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQK  158 (219)
T ss_pred             HHHHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHH
Confidence            7788875 5677888889999999999999999742   232    234444332    345889999999999999999


Q ss_pred             hcCCCCCCcc---hHHHHHHHHHHHHhhh-----C-CCeEEEcCC--CCHHHHHHHHHH
Q 025041          191 RGGYGGERYE---HLEFQRKVAQCYQMLR-----D-SSWKIIDAC--QSIEDVEKQLKE  238 (259)
Q Consensus       191 R~~~R~d~~e---~~~~~~rv~~~y~~l~-----~-~~~~vIDa~--~s~eev~~~I~~  238 (259)
                      |+..|+...+   +.+|++++.+.|.++.     . .++++||++  .++++|+++|..
T Consensus       159 Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~~~~~~e~i~~~I~~  217 (219)
T cd02030         159 RIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVVEDIEY  217 (219)
T ss_pred             HHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCCChhhHHHHHHHHHc
Confidence            9987764433   4789999999998763     2 489999998  899999988764

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.87  E-value=9.2e-22  Score=165.23  Aligned_cols=167  Identities=26%  Similarity=0.402  Sum_probs=114.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCC-ChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH-HHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRT-TSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS-MMEA  134 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~-~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~-~i~~  134 (259)
                      +|+|+|++||||||+++.|++++   |+  ..+.+|... ...+..+++++.++..+ ....++++.++|+++.. .+.+
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~---~~--~~~~Ep~~~~~~~~~~l~~~~~~~~~~-~~~~q~~~~~~r~~~~~~~~~~   74 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHL---GY--EVVPEPVEPDVEGNPFLEKFYEDPKRW-AFPFQLYFLLSRLKQYKDALEH   74 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh---CC--ccccccccccCCCCCCHHHHHhCHHhc-cHHHHHHHHHHHHHHHHHHHhh
Confidence            59999999999999999999986   33  234666310 01123355665543222 23345556677877753 3333


Q ss_pred             HHhcCCeEEEcccccchhhhhcC---CC-C---CHHHHHh----hhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc---
Q 025041          135 KLKAGTTLIVDRYSYSGVAFSSA---KG-I---DIEWCKA----PEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE---  200 (259)
Q Consensus       135 ~l~~g~~VI~DR~~~s~~ay~~~---~g-l---~~~~~~~----~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e---  200 (259)
                       ++.|.+||+|||++|+++|+..   .| .   +.+++..    +....+.||++|||++|++++.+|+..|+...|   
T Consensus        75 -~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r~~e~~~  153 (193)
T cd01673          75 -LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGRPEEQGI  153 (193)
T ss_pred             -cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCcHhhhcC
Confidence             6689999999999999988642   12 1   2333322    233457899999999999999999987754433   


Q ss_pred             hHHHHHHHHHHHHhhhC------CCeEEEcCCC-CHH
Q 025041          201 HLEFQRKVAQCYQMLRD------SSWKIIDACQ-SIE  230 (259)
Q Consensus       201 ~~~~~~rv~~~y~~l~~------~~~~vIDa~~-s~e  230 (259)
                      ..+|++++...|..+..      .++++||++. +++
T Consensus       154 ~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~~~~~~  190 (193)
T cd01673         154 PLDYLEDLHEAYEKWFLPQMYEKAPVLIIDANEADIE  190 (193)
T ss_pred             CHHHHHHHHHHHHHHHhhccCCCCCEEEEECCccccc
Confidence            36899999999988653      4789999975 544

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PHA03132 thymidine kinase; Provisional

Probab=99.83  E-value=1.4e-19  Score=172.76  Aligned_cols=160  Identities=17%  Similarity=0.212  Sum_probs=113.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCC-----ChHHHHHHHHHhCC--CCCCHHHHH--------
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRT-----TSVGQMISAYLSNQ--SHLDDHTIH--------  118 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~-----~~~g~~ir~~l~~~--~~~~~~~~~--------  118 (259)
                      ++++|+|||++||||||+++.|++.+   |..++.+.||...     +..++.|++.+...  +.++.....        
T Consensus       256 ~~~fIv~EGidGsGKTTlik~L~e~l---g~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA  332 (580)
T PHA03132        256 PACFLFLEGVMGVGKTTLLNHMRGIL---GDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFA  332 (580)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHh---CCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHh
Confidence            58999999999999999999999999   6788888999732     13466676665432  234332222        


Q ss_pred             --HHHHHhHHHHH----HHHHHHHhcCCeEEEcccccchhhhh-cC---CC-CCHH-HHHhhhc-cCCCCCEEEEEeCCH
Q 025041          119 --LLFSANRWEKR----SMMEAKLKAGTTLIVDRYSYSGVAFS-SA---KG-IDIE-WCKAPEI-GLLAPDSVLYLDIPP  185 (259)
Q Consensus       119 --ll~~a~r~~~~----~~i~~~l~~g~~VI~DR~~~s~~ay~-~~---~g-l~~~-~~~~~~~-~~~~PdlvI~Ld~~~  185 (259)
                        ++++++|.++.    ..+.+.+..|.+||+|||++|.++|. ..   .| ++.+ ++..+.. ..+.||++|||++++
T Consensus       333 ~Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~p  412 (580)
T PHA03132        333 TPFRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNS  412 (580)
T ss_pred             hHHHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCH
Confidence              23446776653    23445667899999999999998733 21   23 2333 2332222 235699999999999


Q ss_pred             HHHHhhcCCCCCCcc---hHHHHHHHHHHHHhhh
Q 025041          186 EKAAERGGYGGERYE---HLEFQRKVAQCYQMLR  216 (259)
Q Consensus       186 e~~~~R~~~R~d~~e---~~~~~~rv~~~y~~l~  216 (259)
                      +++++|+..|++.+|   +.+|++++++.|..+.
T Consensus       413 e~alkRIkkRgR~~E~~IdleYL~rLre~Y~~l~  446 (580)
T PHA03132        413 EENLRRVKKRGRKEEKGINLTYLKELNWAYHAVY  446 (580)
T ss_pred             HHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHH
Confidence            999999998866565   4689999999998764

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.76  E-value=7.3e-17  Score=134.24  Aligned_cols=168  Identities=16%  Similarity=0.209  Sum_probs=107.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE-----ecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW-----RFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK  128 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~-----~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~  128 (259)
                      +.++|+|+|++||||||+++.|++.++   +..+..     .+...+++.+..++.++..+... +.......      .
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------l   71 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEKYG---FTHLSTGDLLRAEVASGSERGKQLQAIMESGDLV-PLDTVLDL------L   71 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCC-CHHHHHHH------H
Confidence            457899999999999999999999884   433321     11111344556666666544322 21111100      0


Q ss_pred             HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc--hHH
Q 025041          129 RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE--HLE  203 (259)
Q Consensus       129 ~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e--~~~  203 (259)
                      ...+.+.+..|..||+|+|+.+.  .+         ...+......||++|||++|++++.+|+..|.   ++.+  ...
T Consensus        72 ~~~~~~~~~~~~~~i~dg~~~~~--~q---------~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~  140 (188)
T TIGR01360        72 KDAMVAALGTSKGFLIDGYPREV--KQ---------GEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKT  140 (188)
T ss_pred             HHHHHcccCcCCeEEEeCCCCCH--HH---------HHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHH
Confidence            12334445668889999987532  11         12222344679999999999999999997663   2332  245


Q ss_pred             HHHHHHHHHHhh-------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          204 FQRKVAQCYQML-------R-DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       204 ~~~rv~~~y~~l-------~-~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      +.+++...|.+.       . ...+++||+++++++|.++|...++.
T Consensus       141 ~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  187 (188)
T TIGR01360       141 IKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAIDK  187 (188)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            666666655432       1 23688999999999999999998763

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14532 adenylate kinase; Provisional

Probab=99.74  E-value=3e-16  Score=131.21  Aligned_cols=167  Identities=17%  Similarity=0.122  Sum_probs=105.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      .|+|.|+|||||||+++.|+++++   +..+..    +. -..+++.|..+++++..+....+....-++ .      ..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g---~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~------~~   71 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERG---MVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALI-E------ER   71 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC---CeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHH-H------HH
Confidence            489999999999999999999885   333321    11 012345677777777655433332211111 0      01


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc--hHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE--HLEFQ  205 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e--~~~~~  205 (259)
                      +. ....+..+|+|+||.+.-  |      .+.+.. +......||++|+|++|++++.+|+..|.   ++.+  ...+.
T Consensus        72 ~~-~~~~~~g~vldg~pr~~~--q------~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~  142 (188)
T PRK14532         72 LP-EAEAAGGAIFDGFPRTVA--Q------AEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFV  142 (188)
T ss_pred             Hh-CcCccCcEEEeCCCCCHH--H------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHH
Confidence            11 122356788899986431  1      122222 22334579999999999999999987662   3332  24567


Q ss_pred             HHHHHHHHhhh--------CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          206 RKVAQCYQMLR--------DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       206 ~rv~~~y~~l~--------~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      +++...|.+..        ...++.||+++++++|+++|.+.+..
T Consensus       143 ~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  187 (188)
T PRK14532        143 TRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALEG  187 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            77766665431        23588999999999999999998754

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=99.73  E-value=1.4e-16  Score=133.74  Aligned_cols=179  Identities=20%  Similarity=0.259  Sum_probs=113.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME  133 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~  133 (259)
                      ..++|+|+|+.|+||||+++.|+++|+.   .+.  -|...++++   +..++.++..++. ..++.|..+|+..   .+
T Consensus         3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~---~~~--~E~vednp~---L~~FY~d~~~yaf-~~QiyFL~~Rfk~---~k   70 (216)
T COG1428           3 VAMVIVIEGMIGAGKSTLAQALAEHLGF---KVF--YELVEDNPF---LDLFYEDPERYAF-LLQIYFLLNRFKK---IK   70 (216)
T ss_pred             cccEEEEecccccCHHHHHHHHHHHhCC---cee--eecccCChH---HHHHHHhHHHhhH-HHHHHHHHHHHHH---HH
Confidence            4689999999999999999999999974   222  222223443   4455665444433 2445677777663   34


Q ss_pred             HHHhcCCeEEEcccccchh-hhhc---CCCC-C-H------HHHHhh---hccCC-CCCEEEEEeCCHHHHHhhcCCCCC
Q 025041          134 AKLKAGTTLIVDRYSYSGV-AFSS---AKGI-D-I------EWCKAP---EIGLL-APDSVLYLDIPPEKAAERGGYGGE  197 (259)
Q Consensus       134 ~~l~~g~~VI~DR~~~s~~-ay~~---~~gl-~-~------~~~~~~---~~~~~-~PdlvI~Ld~~~e~~~~R~~~R~d  197 (259)
                      ..+..+. .|.||+++... .+..   ..|. . .      +.+..+   ....+ .||+.||||++.++.++|+..|+.
T Consensus        71 ~~~~~~~-~i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR  149 (216)
T COG1428          71 KALSDKN-NILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGR  149 (216)
T ss_pred             HHhcccc-cccCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCC
Confidence            5555555 78899888665 3332   1222 2 1      112221   12345 999999999999999999998887


Q ss_pred             Ccc------hHHHHHHHHHHHHhhhC----CCeEEEcCC----CCHHHHHHHHHHHHHHHHh
Q 025041          198 RYE------HLEFQRKVAQCYQMLRD----SSWKIIDAC----QSIEDVEKQLKEIVLDQVT  245 (259)
Q Consensus       198 ~~e------~~~~~~rv~~~y~~l~~----~~~~vIDa~----~s~eev~~~I~~~i~~~l~  245 (259)
                      .+|      ..+|++.+...|..|..    .+.+.||++    ..-++-.+.|+..|.+.+.
T Consensus       150 ~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~~I~~~~~  211 (216)
T COG1428         150 PFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKVLDQILAKLK  211 (216)
T ss_pred             CcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHHHHHHHHHHh
Confidence            776      24799999999998753    355666642    1223334444444554443

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.72  E-value=2.6e-16  Score=130.83  Aligned_cols=165  Identities=19%  Similarity=0.273  Sum_probs=101.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEecC-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWRFP-DRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEA  134 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~~p-~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~  134 (259)
                      +|+|.|+|||||||+|+.|+++++...+++. .++.. ..+++.|+.+++++..+...++....-           .+..
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----------ll~~   69 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVK-----------LLKN   69 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHH-----------HHHH
Confidence            5899999999999999999999953222210 11111 113455666777765544333322110           1111


Q ss_pred             HHh--cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC---Ccc-hHHHHHHH
Q 025041          135 KLK--AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE---RYE-HLEFQRKV  208 (259)
Q Consensus       135 ~l~--~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d---~~e-~~~~~~rv  208 (259)
                      .+.  .+..+|+|+||.+.--.        ..+..+......||++|||++|++++.+|+..|+.   +.+ +.+..++.
T Consensus        70 ~~~~~~~~~~vlDg~p~~~~q~--------~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r  141 (183)
T TIGR01359        70 AIQADGSKKFLIDGFPRNEENL--------EAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKR  141 (183)
T ss_pred             HHhccCCCcEEEeCCCCCHHHH--------HHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHH
Confidence            221  15678999998753211        11222222335699999999999999999987642   222 34444444


Q ss_pred             HHHHHhh--------hC-CCeEEEcCCCCHHHHHHHHHHHH
Q 025041          209 AQCYQML--------RD-SSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       209 ~~~y~~l--------~~-~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                      .+.|.+.        .. ..+++||+++++++|.++|.+.+
T Consensus       142 ~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       142 FRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF  182 (183)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence            4455432        12 35899999999999999998865

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK13808 adenylate kinase; Provisional

Probab=99.71  E-value=5.2e-16  Score=140.13  Aligned_cols=175  Identities=18%  Similarity=0.211  Sum_probs=109.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEe-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEA  134 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~  134 (259)
                      -|+|.|+||||||||+..|++.|+-..+++- +++ +...+++.|..+++++.+++.+++....-++ .++      +..
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li-~e~------l~~   74 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGII-SDR------IEQ   74 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHH-HHH------Hhc
Confidence            4889999999999999999999953222210 011 1122456677777777665544332211111 111      111


Q ss_pred             HHhcCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCCHHHHHhhcCCCC---------CCcc--hH
Q 025041          135 KLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIPPEKAAERGGYGG---------ERYE--HL  202 (259)
Q Consensus       135 ~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---------d~~e--~~  202 (259)
                      . .....+|+|+||.+.-  |.      +.+.. +......||++|+||+|++++++|+..|.         .+.+  ..
T Consensus        75 ~-~~~~G~ILDGFPRt~~--QA------~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E  145 (333)
T PRK13808         75 P-DAANGFILDGFPRTVP--QA------EALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPE  145 (333)
T ss_pred             c-cccCCEEEeCCCCCHH--HH------HHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHH
Confidence            1 1123478899987531  11      22222 22334579999999999999999987651         2232  23


Q ss_pred             HHHHHHHHHHHhhh--------C-CCeEEEcCCCCHHHHHHHHHHHHHHHHhhhh
Q 025041          203 EFQRKVAQCYQMLR--------D-SSWKIIDACQSIEDVEKQLKEIVLDQVTACK  248 (259)
Q Consensus       203 ~~~~rv~~~y~~l~--------~-~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~  248 (259)
                      .+.+|+ ..|.+..        + ..++.||+++++|+|+++|...|...+..+.
T Consensus       146 ~i~kRL-~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~~~~  199 (333)
T PRK13808        146 VLAKRL-ASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGAANA  199 (333)
T ss_pred             HHHHHH-HHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhCCCc
Confidence            445555 5565431        1 3589999999999999999999998776554

>PLN02200 adenylate kinase family protein

Probab=99.70  E-value=5.7e-16  Score=134.41  Aligned_cols=170  Identities=14%  Similarity=0.222  Sum_probs=104.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW  126 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~  126 (259)
                      +..+.+|+|.|+|||||||+|+.|+++++   +..+..    ++ ....++.+..+.+++..+...++....-       
T Consensus        40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g---~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~-------  109 (234)
T PLN02200         40 EKTPFITFVLGGPGSGKGTQCEKIVETFG---FKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVK-------  109 (234)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhC---CeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHH-------
Confidence            34568899999999999999999999884   322211    11 1112334445555544433222211100       


Q ss_pred             HHHHHHHHHHh--cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC-CCcc-hH
Q 025041          127 EKRSMMEAKLK--AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG-ERYE-HL  202 (259)
Q Consensus       127 ~~~~~i~~~l~--~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~-d~~e-~~  202 (259)
                          .+...+.  .+..+|+|+|+.+.--+        ..+....  ...||++|+|++|++++.+|+..|+ ++.+ +.
T Consensus       110 ----~l~~~l~~~~~~~~ILDG~Prt~~q~--------~~l~~~~--~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~  175 (234)
T PLN02200        110 ----LIQKEMESSDNNKFLIDGFPRTEENR--------IAFERII--GAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNI  175 (234)
T ss_pred             ----HHHHHHhcCCCCeEEecCCcccHHHH--------HHHHHHh--ccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCH
Confidence                1111111  23458999998642111        1111111  2369999999999999999998764 3333 34


Q ss_pred             HHHHHHHHHHHhhh--------C-CCeEEEcCCCCHHHHHHHHHHHHHHHHh
Q 025041          203 EFQRKVAQCYQMLR--------D-SSWKIIDACQSIEDVEKQLKEIVLDQVT  245 (259)
Q Consensus       203 ~~~~rv~~~y~~l~--------~-~~~~vIDa~~s~eev~~~I~~~i~~~l~  245 (259)
                      +++++..+.|.+..        + ..++.||+++++++|++.|.+.+..++.
T Consensus       176 e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~  227 (234)
T PLN02200        176 DTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACEA  227 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence            55555556665431        1 3689999999999999999998877654

>PRK14527 adenylate kinase; Provisional

Probab=99.70  E-value=1.4e-15  Score=127.84  Aligned_cols=170  Identities=19%  Similarity=0.202  Sum_probs=103.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEe-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR  129 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~  129 (259)
                      ..+|++|+|.|++||||||+++.|+++++...++.- .++ ....+++.+..++.++..+...+.....           
T Consensus         3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~-----------   71 (191)
T PRK14527          3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELIL-----------   71 (191)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHH-----------
Confidence            457899999999999999999999999965444321 111 1111345566666655544322221100           


Q ss_pred             HHHHHHHhc--CCeEEEcccccchhhhhcCCCCCHHHHHhhh-ccCCCCCEEEEEeCCHHHHHhhcCCCCC---Ccc-hH
Q 025041          130 SMMEAKLKA--GTTLIVDRYSYSGVAFSSAKGIDIEWCKAPE-IGLLAPDSVLYLDIPPEKAAERGGYGGE---RYE-HL  202 (259)
Q Consensus       130 ~~i~~~l~~--g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~-~~~~~PdlvI~Ld~~~e~~~~R~~~R~d---~~e-~~  202 (259)
                      ..+...+.+  +..+|+|+|+.+.-  +      .+++..+. .....++.+|+|++|++++.+|+..|..   +.+ +.
T Consensus        72 ~l~~~~l~~~~~~~~VlDGfpr~~~--q------~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~  143 (191)
T PRK14527         72 ALIRDELAGMEPVRVIFDGFPRTLA--Q------AEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNE  143 (191)
T ss_pred             HHHHHHHhcCCCCcEEEcCCCCCHH--H------HHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCH
Confidence            111222222  34588999885321  1      12232222 2235688999999999999999987631   222 23


Q ss_pred             HHHHHHHHHHHhhh--------C-CCeEEEcCCCCHHHHHHHHHHHH
Q 025041          203 EFQRKVAQCYQMLR--------D-SSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       203 ~~~~rv~~~y~~l~--------~-~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                      +.+.+..+.|.+..        + ..++.||+++++++|+++|...+
T Consensus       144 ~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        144 ETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL  190 (191)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence            44444344454321        1 46899999999999999998865

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=99.69  E-value=1.1e-15  Score=132.53  Aligned_cols=190  Identities=21%  Similarity=0.250  Sum_probs=128.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-----EEe------------cCCCCChHHHHHHHHHhCCCCCCHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-----LWR------------FPDRTTSVGQMISAYLSNQSHLDDHT  116 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-----~~~------------~p~~~~~~g~~ir~~l~~~~~~~~~~  116 (259)
                      +.++|+++|++|||||++|+.|+++|+...++..     ..+            +|.  .--..-|+.++.++..-....
T Consensus        70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~--~cr~~di~~Fy~dPS~dlsa~  147 (393)
T KOG3877|consen   70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPA--RCRLPDISMFYKDPSGDLSAA  147 (393)
T ss_pred             cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCc--ccCchhHHHhccCCCccHHHH
Confidence            5799999999999999999999999987666522     111            111  000122455555553111222


Q ss_pred             HHHHHHHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcC---CCC-CH------HHHHhh-hccCCCCCEEEEEeCC
Q 025041          117 IHLLFSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSA---KGI-DI------EWCKAP-EIGLLAPDSVLYLDIP  184 (259)
Q Consensus       117 ~~ll~~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~---~gl-~~------~~~~~~-~~~~~~PdlvI~Ld~~  184 (259)
                      .+......|+.+ ++.+...|..|+.|+++|+++|.++|..+   .|- ..      +.+++- ...+..|.++||||+|
T Consensus       148 ~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~P  227 (393)
T KOG3877|consen  148 MQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTP  227 (393)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCC
Confidence            233333445555 47777888999999999999999998653   121 11      122211 1346789999999999


Q ss_pred             HHHHHhhcCCCCCCcc----hHHHHHHHHHHHHh--hhC----CCeEEEcC--CCCHHHHHHHHHHHHHHHHh
Q 025041          185 PEKAAERGGYGGERYE----HLEFQRKVAQCYQM--LRD----SSWKIIDA--CQSIEDVEKQLKEIVLDQVT  245 (259)
Q Consensus       185 ~e~~~~R~~~R~d~~e----~~~~~~rv~~~y~~--l~~----~~~~vIDa--~~s~eev~~~I~~~i~~~l~  245 (259)
                      .+.+.++|+.|++.+|    ...|++.+.+.|++  +.+    ..+..-|.  .++.+.|++.|..+=-+.++
T Consensus       228 v~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIErldfd~fe  300 (393)
T KOG3877|consen  228 VNKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDSFLREYSNHSEILAYDWTKPGDTDAVVEDIERLDFDFFE  300 (393)
T ss_pred             cHHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhheeeeecccCCCchhHHHhhhhhcccccc
Confidence            9999999999887766    35788999888876  222    45666775  37899999999875444443

>PRK14531 adenylate kinase; Provisional

Probab=99.69  E-value=2.1e-15  Score=125.98  Aligned_cols=167  Identities=18%  Similarity=0.208  Sum_probs=99.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE-EEEe-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV-ELWR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME  133 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v-~~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~  133 (259)
                      +.|+|.|+|||||||+++.|+++++...+++ ..++ +-..+++.|+.++.++..+...++....-++   .    ..+.
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~---~----~~l~   75 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIV---E----SQLK   75 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHH---H----HHHh
Confidence            3589999999999999999999985433322 1111 1112456677777776655433322111110   0    1111


Q ss_pred             HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchH-HHHHHHHHH
Q 025041          134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHL-EFQRKVAQC  211 (259)
Q Consensus       134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~-~~~~rv~~~  211 (259)
                      . . .+..+|+|+||.+.  .|.      ..+.. +......|+.+|+|++|++++.+|+..|+..-++. .+.+|+ +.
T Consensus        76 ~-~-~~~g~ilDGfpr~~--~q~------~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl-~~  144 (183)
T PRK14531         76 A-L-NSGGWLLDGFPRTV--AQA------EALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNRL-EV  144 (183)
T ss_pred             h-c-cCCcEEEeCCCCCH--HHH------HHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHHH-HH
Confidence            1 1 23446779999763  221      11222 22233458999999999999999998763211122 233333 22


Q ss_pred             HHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHH
Q 025041          212 YQML--------R-DSSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       212 y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                      |.+.        . ...++.||+++++++|+++|.+.+
T Consensus       145 y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        145 YREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            3221        1 246899999999999999998865

>PLN02842 nucleotide kinase

Probab=99.68  E-value=1.2e-15  Score=143.99  Aligned_cols=170  Identities=18%  Similarity=0.227  Sum_probs=111.5

Q ss_pred             EEcCCCCCHHHHHHHHHHHHhhCCCeEE-E-EecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHh
Q 025041           60 LEGLDRCGKTSQCSRLLSYLEGLGHSVE-L-WRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLK  137 (259)
Q Consensus        60 ieG~dGSGKSTla~~L~~~l~~~g~~v~-~-~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~l~  137 (259)
                      |+|+|||||||||+.|+++++...+++- . ..+...++++|+.|++++.++ .+.+......+.+++..+     +...
T Consensus         2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G-~lvPdeiv~~ll~drl~~-----~~~~   75 (505)
T PLN02842          2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSG-RLVPDEIVIAMVTGRLSR-----EDAK   75 (505)
T ss_pred             eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhC-----cccc
Confidence            7899999999999999999954333211 1 122223678999999998765 344444444444555432     1122


Q ss_pred             cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC------C--------------
Q 025041          138 AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG------E--------------  197 (259)
Q Consensus       138 ~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~------d--------------  197 (259)
                      .+. +|+|+|+.+..           .+..++.....||++|+||+|++++.+|+..|.      .              
T Consensus        76 ~~G-~ILDGfPRt~~-----------Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~  143 (505)
T PLN02842         76 EKG-WLLDGYPRSFA-----------QAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEI  143 (505)
T ss_pred             CCc-EEEeCCCCcHH-----------HHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCcccc
Confidence            222 55599988632           122233345679999999999999999976541      0              


Q ss_pred             ------Ccc-hH-HHHHHHHHHHHhhh-------CCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhh
Q 025041          198 ------RYE-HL-EFQRKVAQCYQMLR-------DSSWKIIDACQSIEDVEKQLKEIVLDQVTACK  248 (259)
Q Consensus       198 ------~~e-~~-~~~~rv~~~y~~l~-------~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~  248 (259)
                            |.+ +. .+.+|+ ..|.+..       ...++.||+++++++|+++|.+.|.+++.+++
T Consensus       144 ~~rL~~R~DD~eE~IkkRL-~~Y~~~t~pIl~~Y~~rl~~IDAsqs~EeVfeeI~~iL~~~L~~~~  208 (505)
T PLN02842        144 KARLITRPDDTEEKVKARL-QIYKKNAEAILSTYSDIMVKIDGNRPKEVVFEEISSLLSQIQKDAT  208 (505)
T ss_pred             ccccccCCCCCHHHHHHHH-HHHHHHhhhHHHhcCcEEEEEECCCCHHHHHHHHHHHHHHHHhhhh
Confidence                  111 12 344444 4454422       13578899999999999999999999888766

>PRK02496 adk adenylate kinase; Provisional

Probab=99.67  E-value=2.2e-15  Score=125.64  Aligned_cols=166  Identities=21%  Similarity=0.216  Sum_probs=100.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      +.|+|.|++||||||+++.|++.++.   ..+..    + ....+++.|..++.++..+....+....-+ ..+      
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~---~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~-l~~------   71 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHI---PHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDL-VQE------   71 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC---cEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHH-HHH------
Confidence            45899999999999999999999853   22221    1 111134455556666554432322211100 011      


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhh-ccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHH
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPE-IGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVA  209 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~-~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~  209 (259)
                      .+... .....+|+|+|+.+..-.        ..+.... .....||++|+|++|++++.+|+..|+...+..+++++..
T Consensus        72 ~l~~~-~~~~g~vldGfPr~~~q~--------~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~  142 (184)
T PRK02496         72 RLQQP-DAANGWILDGFPRKVTQA--------AFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRL  142 (184)
T ss_pred             HHhCc-CccCCEEEeCCCCCHHHH--------HHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence            11110 112357889998643111        1222221 2235799999999999999999987643323445666666


Q ss_pred             HHHHh----h---h-C-CCeEEEcCCCCHHHHHHHHHHHH
Q 025041          210 QCYQM----L---R-D-SSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       210 ~~y~~----l---~-~-~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                      +.|.+    +   . + ..++.||+++++++|.++|.+.|
T Consensus       143 ~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l  182 (184)
T PRK02496        143 EVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAAL  182 (184)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            66655    1   1 1 46899999999999999999876

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.67  E-value=1.4e-15  Score=124.84  Aligned_cols=170  Identities=21%  Similarity=0.243  Sum_probs=110.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EE-ecCCC-CChHHHHHHHHHhCCCCCCHH--HHHHHHHHhHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LW-RFPDR-TTSVGQMISAYLSNQSHLDDH--TIHLLFSANRW  126 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~-~~p~~-~~~~g~~ir~~l~~~~~~~~~--~~~ll~~a~r~  126 (259)
                      ..++++|.|.|+|||||.|||.++++.+...++++- ++ .+... ++..|..|++++.++. +.|.  ...++..    
T Consensus         5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~-iVP~ei~~~LL~~----   79 (195)
T KOG3079|consen    5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGD-LVPVEITLSLLEE----   79 (195)
T ss_pred             ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCC-cCcHHHHHHHHHH----
Confidence            357899999999999999999999999964333321 11 22222 6778899999888764 4332  2222211    


Q ss_pred             HHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCC-CCCEEEEEeCCHHHHHhhcCCCCC---Cc-ch
Q 025041          127 EKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL-APDSVLYLDIPPEKAAERGGYGGE---RY-EH  201 (259)
Q Consensus       127 ~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~-~PdlvI~Ld~~~e~~~~R~~~R~d---~~-e~  201 (259)
                          .+..... .+..++|+||...           +....++.... .|++++|+|++.|++++|+..|+.   |- ++
T Consensus        80 ----am~~~~~-~~~fLIDGyPR~~-----------~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn  143 (195)
T KOG3079|consen   80 ----AMRSSGD-SNGFLIDGYPRNV-----------DQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDN  143 (195)
T ss_pred             ----HHHhcCC-CCeEEecCCCCCh-----------HHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCc
Confidence                1222112 1338889998632           33334444444 699999999999999999876532   11 12


Q ss_pred             HHHHHHHHHHHHhh-------hC--CCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          202 LEFQRKVAQCYQML-------RD--SSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       202 ~~~~~rv~~~y~~l-------~~--~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      .+..++..+.|...       .+  ..++.||++.++++|+++++.+++.
T Consensus       144 ~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  144 EESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA  193 (195)
T ss_pred             hHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence            33333333444332       11  4788999999999999999998875

>PRK06762 hypothetical protein; Provisional

Probab=99.64  E-value=1.6e-14  Score=118.30  Aligned_cols=159  Identities=14%  Similarity=0.100  Sum_probs=96.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHh-CCCCCCHHHHHHHHHHhHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLS-NQSHLDDHTIHLLFSANRWEKRSMME  133 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~-~~~~~~~~~~~ll~~a~r~~~~~~i~  133 (259)
                      +++|+|.|++||||||+++.|++++.   ..+..++        .+.++..+. ............+.        ..++
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~---~~~~~i~--------~D~~r~~l~~~~~~~~~~~~~~~~--------~~~~   62 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLG---RGTLLVS--------QDVVRRDMLRVKDGPGNLSIDLIE--------QLVR   62 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEec--------HHHHHHHhccccCCCCCcCHHHHH--------HHHH
Confidence            67999999999999999999999983   2333332        234444222 11111111111111        1223


Q ss_pred             HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCc-chHHHHHHHHHHH
Q 025041          134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERY-EHLEFQRKVAQCY  212 (259)
Q Consensus       134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~-e~~~~~~rv~~~y  212 (259)
                      ..+..|..||+|...... .|.       +++..+......|..+|||++|++++.+|...|+... .+.+.+++..+..
T Consensus        63 ~~~~~g~~vild~~~~~~-~~~-------~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~  134 (166)
T PRK06762         63 YGLGHCEFVILEGILNSD-RYG-------PMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPH  134 (166)
T ss_pred             HHHhCCCEEEEchhhccH-hHH-------HHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhc
Confidence            446678899999764322 121       3344444445568899999999999999998775421 2233333322222


Q ss_pred             HhhhCCCeEEEcCCCCHHHHHHHHHHHH
Q 025041          213 QMLRDSSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       213 ~~l~~~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                      ..+.....++++++.++++|+++|...+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~  162 (166)
T PRK06762        135 DTLGVIGETIFTDNLSLKDIFDAILTDI  162 (166)
T ss_pred             CCcCCCCeEEecCCCCHHHHHHHHHHHh
Confidence            2222245666677899999999998865

>TIGR01351 adk adenylate kinases

Probab=99.64  E-value=8.3e-15  Score=124.90  Aligned_cols=165  Identities=22%  Similarity=0.247  Sum_probs=97.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEe-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK  135 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~  135 (259)
                      |+|.|+|||||||+|+.|+++++...+++- .++ +....++.|..+++++..+...++....-+ ..      +.+...
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l-~~------~~i~~~   74 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQL-VK------ERLTQN   74 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHH-HH------HHHhcC
Confidence            789999999999999999998853222211 111 112235567777777665543333211100 00      111111


Q ss_pred             HhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCC-CCCEEEEEeCCHHHHHhhcCCCC------------------
Q 025041          136 LKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL-APDSVLYLDIPPEKAAERGGYGG------------------  196 (259)
Q Consensus       136 l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~-~PdlvI~Ld~~~e~~~~R~~~R~------------------  196 (259)
                      ...+..+|+|+|+.+.-           ....+..... .||++|+|++|.+++.+|+..|.                  
T Consensus        75 ~~~~~~~ilDGfPrt~~-----------Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~  143 (210)
T TIGR01351        75 QDNENGFILDGFPRTLS-----------QAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKV  143 (210)
T ss_pred             cccCCcEEEeCCCCCHH-----------HHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCcc
Confidence            11245688999886421           1222222233 69999999999999999987652                  


Q ss_pred             ------------CCcc-hHHHHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHH
Q 025041          197 ------------ERYE-HLEFQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       197 ------------d~~e-~~~~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                                  .|.+ +.+..++..+.|.+.        . ...++.||+++++++|++.|.+.|
T Consensus       144 ~~~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  209 (210)
T TIGR01351       144 PGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL  209 (210)
T ss_pred             CCcCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence                        0111 223333223334331        1 135889999999999999999875

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14529 adenylate kinase; Provisional

Probab=99.63  E-value=4.1e-14  Score=121.63  Aligned_cols=167  Identities=14%  Similarity=0.164  Sum_probs=104.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWRF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEA  134 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~  134 (259)
                      -|+|.|+|||||||+++.|+++++-.++++- .+++ ...+++.|+.+++++..+..+......-+ ..++      +..
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~l-v~~~------l~~   74 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPM-ILET------LKQ   74 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHH-HHHH------Hhc
Confidence            4899999999999999999999976655432 2332 23367889999999876643333221111 1111      111


Q ss_pred             HHhcCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCCHHHHHhhcCCCC-----------------
Q 025041          135 KLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIPPEKAAERGGYGG-----------------  196 (259)
Q Consensus       135 ~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~-----------------  196 (259)
                      . . ...+|+|+||.+.-  |.      +.+.. +......||.+|+|++|.+++.+|+..|.                 
T Consensus        75 ~-~-~~g~iLDGfPRt~~--Qa------~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p  144 (223)
T PRK14529         75 D-G-KNGWLLDGFPRNKV--QA------EKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAI  144 (223)
T ss_pred             c-C-CCcEEEeCCCCCHH--HH------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCC
Confidence            1 1 34588999998532  21      22222 22223579999999999999999987651                 


Q ss_pred             ---------------CCcch--H-HHHHHHHH-------------HHHhhh---CCCeEEEcCCCCHHHHHHHHHHHH
Q 025041          197 ---------------ERYEH--L-EFQRKVAQ-------------CYQMLR---DSSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       197 ---------------d~~e~--~-~~~~rv~~-------------~y~~l~---~~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                                     .|.+.  . ...+|+..             .|.+++   ...++.||+++++|+|+++|.+.+
T Consensus       145 ~~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l  222 (223)
T PRK14529        145 KPDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL  222 (223)
T ss_pred             cccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence                           02111  2 23333322             232211   235899999999999999998875

>PLN02674 adenylate kinase

Probab=99.63  E-value=1.3e-14  Score=126.23  Aligned_cols=171  Identities=13%  Similarity=0.102  Sum_probs=103.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEe-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      .+.+.|+|.|+||||||||++.|+++++-..+++- .++ +-..+++.|..+++++..+..+.+....-+. .++     
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv-~~~-----  102 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII-DEA-----  102 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHH-HHH-----
Confidence            34577999999999999999999999954322211 111 1122466777788877755433332211110 111     


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhh-hccCCCCCEEEEEeCCHHHHHhhcCCCC------C------
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAP-EIGLLAPDSVLYLDIPPEKAAERGGYGG------E------  197 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~-~~~~~~PdlvI~Ld~~~e~~~~R~~~R~------d------  197 (259)
                       +.. ...+..+|+|+||.+..  |.      +.+..+ ......||.+|+|++|.+++.+|+..|.      .      
T Consensus       103 -l~~-~~~~~g~ilDGfPRt~~--Qa------~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~  172 (244)
T PLN02674        103 -MKK-PSCQKGFILDGFPRTVV--QA------QKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKF  172 (244)
T ss_pred             -HhC-cCcCCcEEEeCCCCCHH--HH------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCcccccc
Confidence             111 01234689999997532  21      223222 2233579999999999999999987651      0      


Q ss_pred             ------------------Ccc-hH-HHHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHH
Q 025041          198 ------------------RYE-HL-EFQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       198 ------------------~~e-~~-~~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                                        |.+ +. ...+|+ +.|.+.        . ...++.||+++++++|+++|...+
T Consensus       173 ~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL-~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l  243 (244)
T PLN02674        173 APPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL  243 (244)
T ss_pred             CCCcccCcccccCCccccCCCCCHHHHHHHH-HHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence                              111 12 333444 334331        1 135889999999999999998865

>PRK14528 adenylate kinase; Provisional

Probab=99.59  E-value=6.6e-14  Score=117.34  Aligned_cols=165  Identities=12%  Similarity=0.123  Sum_probs=95.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-----cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-----FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-----~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      +.|+|.|+|||||||+++.|++.++   +.++...     ....+++.|..++.++..+....... ..-...      .
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~---~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~-~~~~~~------~   71 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLS---IPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSV-VIGIIK------D   71 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC---CCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHH-HHHHHH------H
Confidence            4589999999999999999999984   3333211     11123455655666655443222211 000000      1


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCc-chH-HH
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERY-EHL-EF  204 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~-e~~-~~  204 (259)
                      .+... .....+|+|+||.+.-  +      .+.+.. +......||++|+|++|++++.+|+..|.   .+. ++. .+
T Consensus        72 ~l~~~-~~~~g~viDG~Pr~~~--q------a~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i  142 (186)
T PRK14528         72 RIREA-DCKNGFLLDGFPRTVE--Q------ADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATI  142 (186)
T ss_pred             HHhCc-CccCcEEEeCCCCCHH--H------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHH
Confidence            11111 1123578899886431  1      022222 22234579999999999999999998762   111 122 33


Q ss_pred             HHHHHHHHHhh-------h-CCCeEEEcCCCCHHHHHHHHHHH
Q 025041          205 QRKVAQCYQML-------R-DSSWKIIDACQSIEDVEKQLKEI  239 (259)
Q Consensus       205 ~~rv~~~y~~l-------~-~~~~~vIDa~~s~eev~~~I~~~  239 (259)
                      .+|+..++...       . ...++.||+++++++|++.|.+.
T Consensus       143 ~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~  185 (186)
T PRK14528        143 KNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKE  185 (186)
T ss_pred             HHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence            34443322221       1 24689999999999999998764

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.59  E-value=9.4e-14  Score=121.38  Aligned_cols=162  Identities=19%  Similarity=0.205  Sum_probs=104.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKL  136 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~l  136 (259)
                      +|+|+|+|||||||+++.|++++...|++++.+..        +.+++.+..   +.......+    +......++.++
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~--------D~lr~~~~~---~~~~~e~~~----~~~~~~~i~~~l   65 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT--------DLIRESFPV---WKEKYEEFI----RDSTLYLIKTAL   65 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc--------HHHHHHhHH---hhHHhHHHH----HHHHHHHHHHHH
Confidence            68999999999999999999999887887776542        223333210   001001000    111123456777


Q ss_pred             hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHhhh
Q 025041          137 KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLR  216 (259)
Q Consensus       137 ~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l~  216 (259)
                      ..|..||+|+..+.    ...    ...+..+......|.++|||++|++++.+|...|++.+. .+..+++...|+...
T Consensus        66 ~~~~~VI~D~~~~~----~~~----r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~-~~~i~~l~~r~e~p~  136 (249)
T TIGR03574        66 KNKYSVIVDDTNYY----NSM----RRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIP-NEVIKDMYEKFDEPG  136 (249)
T ss_pred             hCCCeEEEeccchH----HHH----HHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCC-HHHHHHHHHhhCCCC
Confidence            88889999975431    110    011222233445788999999999999999987765443 355566666665432


Q ss_pred             -----CCCeEEEcCCC--CHHHHHHHHHHHHHH
Q 025041          217 -----DSSWKIIDACQ--SIEDVEKQLKEIVLD  242 (259)
Q Consensus       217 -----~~~~~vIDa~~--s~eev~~~I~~~i~~  242 (259)
                           +...++||++.  ++++++++|.+.+..
T Consensus       137 ~~~~wd~~~~~vd~~~~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       137 TKYSWDLPDLTIDTTKKIDYNEILEEILEISEN  169 (249)
T ss_pred             CCCCccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence                 23668899865  779999999987654

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PLN02459 probable adenylate kinase

Probab=99.59  E-value=7.1e-14  Score=122.34  Aligned_cols=172  Identities=19%  Similarity=0.155  Sum_probs=106.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEe-cCCCCChHHHHHHHHHhCCCCCCHHHH-HHHHHHhHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWR-FPDRTTSVGQMISAYLSNQSHLDDHTI-HLLFSANRWEKRS  130 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~-~ll~~a~r~~~~~  130 (259)
                      +++.|+|.|+|||||||++..|++.++-..+++- .++ +...+++.|..++.++..+.-+++... .++  .+      
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll--~~------   99 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLL--SK------   99 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHH--HH------
Confidence            3466888999999999999999999853322211 111 122356778888888877654443221 111  11      


Q ss_pred             HHHHHH-hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC-------------
Q 025041          131 MMEAKL-KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG-------------  196 (259)
Q Consensus       131 ~i~~~l-~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~-------------  196 (259)
                      .+.... .....+|+|+||.+.           +.+..+.. ...+|.+|+|++|.+++.+|+..|.             
T Consensus       100 ~l~~~~~~~~~g~iLDGFPRt~-----------~Qa~~Le~-~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~  167 (261)
T PLN02459        100 RLEAGEEEGESGFILDGFPRTV-----------RQAEILEG-VTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVAD  167 (261)
T ss_pred             HHhcccccCCceEEEeCCCCCH-----------HHHHHHHh-cCCCCEEEEEECCHHHHHHHhhccccccccCccccccc
Confidence            111111 113468999999853           12222222 2458999999999999999987652             


Q ss_pred             ----------------------------CCcc-hHH-HHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHH
Q 025041          197 ----------------------------ERYE-HLE-FQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLK  237 (259)
Q Consensus       197 ----------------------------d~~e-~~~-~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~  237 (259)
                                                  .|.+ +.+ ..+|+ +.|.+-        . ...++.||+++++++|+++|.
T Consensus       168 ~~~~~~~~~~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL-~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~  246 (261)
T PLN02459        168 IDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKARL-RVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLL  246 (261)
T ss_pred             cccccccccccccCCCCCCCcccccccccCCCCCHHHHHHHH-HHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHH
Confidence                                        0111 123 33444 344331        1 146889999999999999999


Q ss_pred             HHHHHHHhh
Q 025041          238 EIVLDQVTA  246 (259)
Q Consensus       238 ~~i~~~l~~  246 (259)
                      +.|.---++
T Consensus       247 ~~l~~~~~~  255 (261)
T PLN02459        247 QALNLDDED  255 (261)
T ss_pred             HHhchhhhh
Confidence            988654433

>PRK14530 adenylate kinase; Provisional

Probab=99.58  E-value=3.1e-13  Score=115.62  Aligned_cols=161  Identities=19%  Similarity=0.232  Sum_probs=92.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-----cC-----CCCChHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-----FP-----DRTTSVGQMISAYLSNQSHLDDHTIHLLFSA  123 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-----~p-----~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a  123 (259)
                      .++.|+|.|++||||||+++.|++.++   +..+...     +.     ..++..+. ++.++..+........      
T Consensus         2 ~~~~I~i~G~pGsGKsT~~~~La~~~~---~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~------   71 (215)
T PRK14530          2 SQPRILLLGAPGAGKGTQSSNLAEEFG---VEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVV------   71 (215)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHH------
Confidence            355799999999999999999999994   4333210     00     00112222 2222222211111100      


Q ss_pred             hHHHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC------
Q 025041          124 NRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE------  197 (259)
Q Consensus       124 ~r~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d------  197 (259)
                           ...+...+.....+|+|+|+.+.           +....+. ....||++|+|++|++++.+|+..|..      
T Consensus        72 -----~~~l~~~l~~~~~~IldG~pr~~-----------~q~~~l~-~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~  134 (215)
T PRK14530         72 -----NEIVEEALSDADGFVLDGYPRNL-----------EQAEYLE-SITDLDVVLYLDVSEEELVDRLTGRRVCPDCGA  134 (215)
T ss_pred             -----HHHHHHHHhcCCCEEEcCCCCCH-----------HHHHHHH-HhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCC
Confidence                 01223334444457889877542           1111111 123689999999999999999865521      


Q ss_pred             --------------------Cc-----chH-HHHHHHHHHHHh-h-------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          198 --------------------RY-----EHL-EFQRKVAQCYQM-L-------R-DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       198 --------------------~~-----e~~-~~~~rv~~~y~~-l-------~-~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                                          +.     +.. ...+|+.. |.+ .       . ...++.||+++++++|++.|.+.|..
T Consensus       135 ~~~~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~-y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  213 (215)
T PRK14530        135 NYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDV-FEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD  213 (215)
T ss_pred             ccccCCCCCcccccCcccCCcccCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence                                11     112 23344433 322 1       1 13688999999999999999998865

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.57  E-value=1.3e-13  Score=118.01  Aligned_cols=170  Identities=17%  Similarity=0.197  Sum_probs=99.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEe-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME  133 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~  133 (259)
                      +.|+|.|+|||||||+++.|+++++...+++- .++ +...+++.|..+++++..+...+.....-++ .      +.+.
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i-~------~~l~   73 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLV-K------ERLA   73 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHH-H------HHHh
Confidence            35899999999999999999999964322221 111 1222456677777777655433332111000 0      1111


Q ss_pred             HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhh-hccCCCCCEEEEEeCCHHHHHhhcCCCC----------------
Q 025041          134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAP-EIGLLAPDSVLYLDIPPEKAAERGGYGG----------------  196 (259)
Q Consensus       134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~-~~~~~~PdlvI~Ld~~~e~~~~R~~~R~----------------  196 (259)
                      . ...+..+|+|+||.+.-  +.      +.+..+ ......|+.+|+|++|.+++.+|+..|.                
T Consensus        74 ~-~~~~~g~VlDGfPr~~~--qa------~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p  144 (215)
T PRK00279         74 Q-PDCKNGFLLDGFPRTIP--QA------EALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPP  144 (215)
T ss_pred             c-cCccCCEEEecCCCCHH--HH------HHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCC
Confidence            1 01233588899886421  10      222221 2223468999999999999999987652                


Q ss_pred             --------------CCcc-h-HHHHHHHHHHHHh-h-------hC-CCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          197 --------------ERYE-H-LEFQRKVAQCYQM-L-------RD-SSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       197 --------------d~~e-~-~~~~~rv~~~y~~-l-------~~-~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                                    .+.+ . ..+.+|+. .|.+ .       .. ..++.||+++++++|+++|.+.|..
T Consensus       145 ~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~-~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (215)
T PRK00279        145 KVEGKCDVCGEELIQRADDNEETVRKRLE-VYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK  214 (215)
T ss_pred             CCcCcCcCCCCcccCCCCCCHHHHHHHHH-HHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence                          0111 1 23334443 3332 1       11 3588999999999999999998753

>PRK08233 hypothetical protein; Provisional

Probab=99.53  E-value=3.7e-13  Score=111.34  Aligned_cols=159  Identities=14%  Similarity=0.216  Sum_probs=93.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE---ecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW---RFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~---~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      ++++|+|.|++||||||+++.|++.|...  .+...   ..+..    ...+...+..+..+.......        ...
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~--~~~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--------~~~   67 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNS--KALYFDRYDFDNC----PEDICKWIDKGANYSEWVLTP--------LIK   67 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCC--ceEEECCEEcccC----chhhhhhhhccCChhhhhhHH--------HHH
Confidence            57899999999999999999999998532  23322   11111    112233333322221111100        012


Q ss_pred             HHHHHHhcC--CeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC------CCcc--
Q 025041          131 MMEAKLKAG--TTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG------ERYE--  200 (259)
Q Consensus       131 ~i~~~l~~g--~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~------d~~e--  200 (259)
                      .+...++.+  .+||+|.. +.   +.     . +.+      ...+|++|||++|++++.+|...|.      +.+.  
T Consensus        68 ~l~~~~~~~~~~~vivd~~-~~---~~-----~-~~~------~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~  131 (182)
T PRK08233         68 DIQELIAKSNVDYIIVDYP-FA---YL-----N-SEM------RQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHND  131 (182)
T ss_pred             HHHHHHcCCCceEEEEeee-hh---hc-----c-HHH------HHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhH
Confidence            233333333  56777742 21   00     0 011      1347999999999999988865442      1111  


Q ss_pred             hHHHHHHHHHHHHhhhC----CCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          201 HLEFQRKVAQCYQMLRD----SSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       201 ~~~~~~rv~~~y~~l~~----~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      ..+|..+++..|.++..    ..+++||++.++++++++|.+.+..
T Consensus       132 ~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~  177 (182)
T PRK08233        132 LKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELYR  177 (182)
T ss_pred             HHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence            13566667777776432    2467899999999999999998763

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.52  E-value=2.5e-13  Score=115.62  Aligned_cols=171  Identities=17%  Similarity=0.227  Sum_probs=101.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE-EecCCCCChHH--------HHHHHHHhCCCCCCHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL-WRFPDRTTSVG--------QMISAYLSNQSHLDDHTIHLLFS  122 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~-~~~p~~~~~~g--------~~ir~~l~~~~~~~~~~~~ll~~  122 (259)
                      ..++++|+|+||+||||||+++.|.+.....++.+.+ ++.|..+..-|        +.+......+. +..+.   -+.
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~-~le~~---~~~   85 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNE-LLEWA---EVY   85 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCC-cEEEE---EEc
Confidence            4689999999999999999999997653222222222 22221110001        11112211110 00000   000


Q ss_pred             HhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHH--HHHhhcCCCCCCc
Q 025041          123 ANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPE--KAAERGGYGGERY  199 (259)
Q Consensus       123 a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e--~~~~R~~~R~d~~  199 (259)
                      .+.|.. ...+...+++|.+||+|-.+      ++        +..+..  ..||+++++++||+  ++.+|+..|++. 
T Consensus        86 g~~YGt~~~~i~~~~~~g~~vi~~~~~------~g--------~~~l~~--~~pd~~~if~~pps~e~l~~Rl~~R~~~-  148 (206)
T PRK14738         86 GNYYGVPKAPVRQALASGRDVIVKVDV------QG--------AASIKR--LVPEAVFIFLAPPSMDELTRRLELRRTE-  148 (206)
T ss_pred             CceecCCHHHHHHHHHcCCcEEEEcCH------HH--------HHHHHH--hCCCeEEEEEeCCCHHHHHHHHHHcCCC-
Confidence            011111 13466777889888886322      11        111222  24898888887655  679998876543 


Q ss_pred             chHHHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          200 EHLEFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       200 e~~~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                      ...++++++...|.++..   ..+++||++.++|+++++|.+.|.+.
T Consensus       149 ~~~~~~~Rl~~~~~e~~~~~~~~~~iId~~~~~e~v~~~i~~~l~~~  195 (206)
T PRK14738        149 SPEELERRLATAPLELEQLPEFDYVVVNPEDRLDEAVAQIMAIISAE  195 (206)
T ss_pred             CHHHHHHHHHHHHHHHhcccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            235788899888876642   47899999999999999999998765

>PRK14526 adenylate kinase; Provisional

Probab=99.51  E-value=7e-13  Score=113.33  Aligned_cols=164  Identities=22%  Similarity=0.242  Sum_probs=96.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEe-cCCCCChHHHHHHHHHhCCCCCCHHH-HHHHHHHhHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWR-FPDRTTSVGQMISAYLSNQSHLDDHT-IHLLFSANRWEKRSMME  133 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~-~~ll~~a~r~~~~~~i~  133 (259)
                      -|+|.|++||||||+++.|++.++...++.- .++ +...+++.|..+++++..+....+.. ..++  .      +.+.
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv--~------~~l~   73 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIV--E------DKIN   73 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHH--H------HHHh
Confidence            4789999999999999999998853222111 111 11224566777888776654332221 1111  1      1122


Q ss_pred             HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC-----------------
Q 025041          134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG-----------------  196 (259)
Q Consensus       134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~-----------------  196 (259)
                      +. .....+|+|+||.+.           +.+..+....+ .+.+|+|++|++++.+|+..|.                 
T Consensus        74 ~~-~~~~g~ilDGfPR~~-----------~Qa~~l~~~~~-~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~  140 (211)
T PRK14526         74 TI-KNNDNFILDGFPRNI-----------NQAKALDKFLP-NIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTK  140 (211)
T ss_pred             cc-cccCcEEEECCCCCH-----------HHHHHHHHhcC-CCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCC
Confidence            11 123457779998752           12222222222 2468889999999999987652                 


Q ss_pred             -------------CCcc-hH-HHHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          197 -------------ERYE-HL-EFQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       197 -------------d~~e-~~-~~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                                   .|.+ +. .+.+|+ +.|.+-        . ...++.||+++++++|+++|.+.+..
T Consensus       141 ~~~~~~~~~~~l~~R~DD~~e~i~~Rl-~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~  209 (211)
T PRK14526        141 EKGICDVCKGDLYQRKDDKEESLKTRL-QEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK  209 (211)
T ss_pred             ccCcCCCCCCeeeccCCCCHHHHHHHH-HHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence                         0111 12 333444 334331        1 13578999999999999999998753

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.51  E-value=1.3e-13  Score=112.73  Aligned_cols=165  Identities=20%  Similarity=0.214  Sum_probs=104.0

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      +..+|.+|+|+|++||||||+|..|.+.|...|+.+..++        |+.+|.-+..+=.++        .++|.+++.
T Consensus        19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD--------GDnvR~gL~~dLgFs--------~edR~eniR   82 (197)
T COG0529          19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD--------GDNVRHGLNRDLGFS--------REDRIENIR   82 (197)
T ss_pred             hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec--------ChhHhhcccCCCCCC--------hHHHHHHHH
Confidence            4568899999999999999999999999999999988776        577777765432222        234555432


Q ss_pred             ---HHHH-HHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcchHH
Q 025041          131 ---MMEA-KLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYEHLE  203 (259)
Q Consensus       131 ---~i~~-~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e~~~  203 (259)
                         .+.. ...+|-+||+-  ..|.+.  .    +.+..+.+..  ..+.+-||+++|.++|.+|-+++.   -+-..+.
T Consensus        83 RvaevAkll~daG~iviva--~ISP~r--~----~R~~aR~~~~--~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~  152 (197)
T COG0529          83 RVAEVAKLLADAGLIVIVA--FISPYR--E----DRQMARELLG--EGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIK  152 (197)
T ss_pred             HHHHHHHHHHHCCeEEEEE--eeCccH--H----HHHHHHHHhC--cCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCC
Confidence               2223 33578777762  233322  1    1122222211  125689999999999999976530   0000001


Q ss_pred             HHHHHHHHHHhhhCCCeEEEcC-CCCHHHHHHHHHHHHHH
Q 025041          204 FQRKVAQCYQMLRDSSWKIIDA-CQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       204 ~~~rv~~~y~~l~~~~~~vIDa-~~s~eev~~~I~~~i~~  242 (259)
                      -+.-+...|+... .+-++||+ ..++|+.+++|.+.+.+
T Consensus       153 ~fTGid~pYE~P~-~Pel~l~t~~~~vee~v~~i~~~l~~  191 (197)
T COG0529         153 NFTGIDSPYEAPE-NPELHLDTDRNSVEECVEQILDLLKE  191 (197)
T ss_pred             CCcCCCCCCCCCC-CCeeEeccccCCHHHHHHHHHHHHHh
Confidence            1122233454332 35678997 58999999999988754

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.51  E-value=4.8e-13  Score=110.75  Aligned_cols=164  Identities=17%  Similarity=0.094  Sum_probs=94.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      ..+|.+|+|+|++||||||+++.|++.|...+..++.++        ++.+++.+...+ ........  .+.+..+.. 
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~--------~d~~r~~~~~~~-~~~~~~~~--~~~~~~~l~-   71 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD--------GDELREILGHYG-YDKQSRIE--MALKRAKLA-   71 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe--------cHHHHhhcCCCC-CCHHHHHH--HHHHHHHHH-
Confidence            468899999999999999999999999986665555543        355666554322 22111110  112222211 


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC---cch-HHHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER---YEH-LEFQRK  207 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~---~e~-~~~~~r  207 (259)
                       ......|.+||+|....            .+++.........++++|||++|++++.+|...+..+   .+. .+....
T Consensus        72 -~~l~~~g~~VI~~~~~~------------~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~  138 (176)
T PRK05541         72 -KFLADQGMIVIVTTISM------------FDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGV  138 (176)
T ss_pred             -HHHHhCCCEEEEEeCCc------------HHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccC
Confidence             11235788999984321            1222233333445678999999999999997532000   000 000000


Q ss_pred             HHHHHHhhhCCCeEEEcCC--CCHHHHHHHHHHHHHHH
Q 025041          208 VAQCYQMLRDSSWKIIDAC--QSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       208 v~~~y~~l~~~~~~vIDa~--~s~eev~~~I~~~i~~~  243 (259)
                      ....|...   .-++||++  .++++++++|.+.+...
T Consensus       139 ~~~~~~~~---Ad~vI~~~~~~~~~~~v~~i~~~l~~~  173 (176)
T PRK05541        139 DIPFDEPK---ADLVIDNSCRTSLDEKVDLILNKLKLR  173 (176)
T ss_pred             CCcccCCC---CCEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            11122111   24677776  49999999998877554

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.50  E-value=2.5e-13  Score=113.59  Aligned_cols=117  Identities=22%  Similarity=0.225  Sum_probs=70.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      |+|.|++||||||+++.|+++++   +.++..    + +....++.++.+++++..+...+.....           ..+
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~---~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~l~   67 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYG---LPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVI-----------KLL   67 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHH-----------HHH
Confidence            89999999999999999999984   333321    1 1111235566666666644333321111           112


Q ss_pred             HHHHh---cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC
Q 025041          133 EAKLK---AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG  196 (259)
Q Consensus       133 ~~~l~---~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~  196 (259)
                      .+.+.   .+..+|+|+|+.+..  +      .+++.........|+++|+|++|++++.+|+..|.
T Consensus        68 ~~~l~~~~~~~~~vldg~Pr~~~--q------~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~  126 (194)
T cd01428          68 KERLKKPDCKKGFILDGFPRTVD--Q------AEALDELLDEGIKPDKVIELDVPDEVLIERILGRR  126 (194)
T ss_pred             HHHHhcccccCCEEEeCCCCCHH--H------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            22332   245688899886421  1      12232222223479999999999999999987663

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.47  E-value=2.4e-12  Score=111.27  Aligned_cols=120  Identities=14%  Similarity=0.090  Sum_probs=75.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK  128 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~  128 (259)
                      .++-|+|.|+|||||||+++.|++.++   +.++.+    ++ -...+++|+.+++++..+...++....-+. .     
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g---~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv-~-----   75 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKEN---LKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIV-K-----   75 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC---CcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHH-H-----
Confidence            456699999999999999999999995   333322    21 122457788888887766444332211110 1     


Q ss_pred             HHHHHHHH-hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC
Q 025041          129 RSMMEAKL-KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG  195 (259)
Q Consensus       129 ~~~i~~~l-~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R  195 (259)
                       +.+...+ ..+..+|+|+||.+.  .|         ...+. ....|+++|+|++|.+++.+|+..|
T Consensus        76 -~~l~~~~~~~~~g~iLDGfPRt~--~Q---------a~~l~-~~~~~~~vi~l~~~~~~~~~Rl~~R  130 (229)
T PTZ00088         76 -DEIAKVTDDCFKGFILDGFPRNL--KQ---------CKELG-KITNIDLFVNIYLPRNILIKKLLGR  130 (229)
T ss_pred             -HHHHhhccccCceEEEecCCCCH--HH---------HHHHH-hcCCCCEEEEEeCCHHHHHHHHHcC
Confidence             1122111 224568999998753  12         11122 2247999999999999999997654

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.46  E-value=3.5e-12  Score=106.18  Aligned_cols=168  Identities=20%  Similarity=0.174  Sum_probs=102.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEecC-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWRFP-DRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME  133 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~~p-~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~  133 (259)
                      +.|+|.|+|||||||||+.|+++++--+++.. .++.. ...++.|..++.++..+.-++.....-++ ..      .+.
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v-~~------rl~   73 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLV-KE------RLD   73 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHH-HH------HHH
Confidence            45899999999999999999999753222211 11111 22467888888877766523322111110 11      122


Q ss_pred             HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhh-ccCCCCCEEEEEeCCHHHHHhhcCCCCCCc-chHHHHHHHHHH
Q 025041          134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPE-IGLLAPDSVLYLDIPPEKAAERGGYGGERY-EHLEFQRKVAQC  211 (259)
Q Consensus       134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~-~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~-e~~~~~~rv~~~  211 (259)
                      .+-... .+|+|+||.+...+        +.+++.. .....+|.++.++++.+++.+|+..|..+. ...+..++....
T Consensus        74 ~~d~~~-~~I~dg~PR~~~qa--------~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~~~~R~~~  144 (178)
T COG0563          74 EADCKA-GFILDGFPRTLCQA--------RALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDNEETVKKRLKV  144 (178)
T ss_pred             hhcccC-eEEEeCCCCcHHHH--------HHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence            221122 79999999753221        2333332 222688999999999999999998663111 123344444455


Q ss_pred             HHhhhC-----CCeEEEcCCCCHHHHHHHHHHHH
Q 025041          212 YQMLRD-----SSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       212 y~~l~~-----~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                      |.+...     .. +.||+.++++++.++|.+.+
T Consensus       145 y~~~~~pli~~y~-~~id~~~~i~~v~~~i~~~l  177 (178)
T COG0563         145 YHEQTAPLIEYYS-VTIDGSGEIEEVLADILKAL  177 (178)
T ss_pred             HHhcccchhhhhe-eeccCCCCHHHHHHHHHHhh
Confidence            654332     12 67999999999999998765

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.42  E-value=5.3e-12  Score=105.78  Aligned_cols=164  Identities=18%  Similarity=0.180  Sum_probs=99.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHH-HHHHHhHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIH-LLFSANRWEKRSMMEA  134 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~-ll~~a~r~~~~~~i~~  134 (259)
                      ++|+++|+|||||||.++.|++.|...+..+++...        +..+-++.++ .++-.-.. -.+...+.  ...+..
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k--------dy~~~i~~DE-slpi~ke~yres~~ks~--~rlldS   70 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK--------DYLRGILWDE-SLPILKEVYRESFLKSV--ERLLDS   70 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch--------hhhhheeccc-ccchHHHHHHHHHHHHH--HHHHHH
Confidence            689999999999999999999999987766554321        1111112111 12111110 00001111  113344


Q ss_pred             HHhcCCeEEEccccc-chhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHH
Q 025041          135 KLKAGTTLIVDRYSY-SGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQ  213 (259)
Q Consensus       135 ~l~~g~~VI~DR~~~-s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~  213 (259)
                      +++ ..+||+|---| +++-|+         +....+....+-.+||+.+|++++.+|...|++.+++ +.++++-..|+
T Consensus        71 alk-n~~VIvDdtNYyksmRrq---------L~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~-Evl~qly~RfE  139 (261)
T COG4088          71 ALK-NYLVIVDDTNYYKSMRRQ---------LACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPE-EVLRQLYDRFE  139 (261)
T ss_pred             Hhc-ceEEEEecccHHHHHHHH---------HHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCH-HHHHHHHHhhc
Confidence            454 56899985322 333333         2222345667889999999999999999887777654 66777767776


Q ss_pred             hhhC-----CCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          214 MLRD-----SSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       214 ~l~~-----~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      +...     .+..+||++....++.+.|+..+.
T Consensus       140 ePn~~~rWDspll~id~~d~~t~~IDfiesvl~  172 (261)
T COG4088         140 EPNPDRRWDSPLLVIDDSDVSTEVIDFIESVLR  172 (261)
T ss_pred             CCCCCccccCceEEEecccccccchhHHHHHHH
Confidence            6432     456888866556666666666554

>PRK03839 putative kinase; Provisional

Probab=99.41  E-value=5e-12  Score=105.01  Aligned_cols=148  Identities=17%  Similarity=0.180  Sum_probs=83.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK  135 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~  135 (259)
                      +.|+|.|++||||||+++.|+++++   +.++.+.         +.+++. .-+......... .+  ...  ...+...
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~~~---~~~id~d---------~~~~~~-~~~~~~~~~~~~-~~--~~l--~~~~~~~   62 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEKLG---YEYVDLT---------EFALKK-GIGEEKDDEMEI-DF--DKL--AYFIEEE   62 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC---CcEEehh---------hhhhhc-CCcccCChhhhc-CH--HHH--HHHHHHh
Confidence            3699999999999999999999994   4444322         222111 000011111000 00  000  0112222


Q ss_pred             HhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcch--HHHHHHHHHHHH
Q 025041          136 LKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEH--LEFQRKVAQCYQ  213 (259)
Q Consensus       136 l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~--~~~~~rv~~~y~  213 (259)
                      . .+..+|+|+++.                     .+..||.+|||++|++++.+|+..|+..-+.  .....++...|.
T Consensus        63 ~-~~~~vIidG~~~---------------------~l~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~  120 (180)
T PRK03839         63 F-KEKNVVLDGHLS---------------------HLLPVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCL  120 (180)
T ss_pred             c-cCCCEEEEeccc---------------------cccCCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            2 244577786421                     1235899999999999999999765421110  111122222111


Q ss_pred             -h-hh-CCCeEEEcCC-CCHHHHHHHHHHHHHHH
Q 025041          214 -M-LR-DSSWKIIDAC-QSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       214 -~-l~-~~~~~vIDa~-~s~eev~~~I~~~i~~~  243 (259)
                       + +. ...+++||++ .++++|+++|.+.+.+.
T Consensus       121 ~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~~  154 (180)
T PRK03839        121 CEALEEKEKVIEVDTTGKTPEEVVEEILELIKSG  154 (180)
T ss_pred             HHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhcC
Confidence             1 11 2578899996 69999999999988653

>PRK04040 adenylate kinase; Provisional

Probab=99.40  E-value=3.4e-11  Score=101.16  Aligned_cols=168  Identities=15%  Similarity=0.225  Sum_probs=90.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCC-CCHHHHHHHHHH--hHHHH--H
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSH-LDDHTIHLLFSA--NRWEK--R  129 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~-~~~~~~~ll~~a--~r~~~--~  129 (259)
                      +++|+|.|++||||||+++.|++.+. .++.++..         |+.+.+.....+- .+.....-+-..  .+++.  .
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~~~---------g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~   71 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLK-EDYKIVNF---------GDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAA   71 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEEec---------chHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHH
Confidence            57899999999999999999999995 23444321         2333332222111 111000000000  01111  1


Q ss_pred             HHHHHHHhcCCeEEEccccc--chhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCC---CCCCcch---
Q 025041          130 SMMEAKLKAGTTLIVDRYSY--SGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGY---GGERYEH---  201 (259)
Q Consensus       130 ~~i~~~l~~g~~VI~DR~~~--s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~---R~d~~e~---  201 (259)
                      ..+.. +..+..||+|++..  +...|  -.|++...+.     ...||.+|+|++||+++++|...   |+..+++   
T Consensus        72 ~~i~~-~~~~~~~~~~~h~~i~~~~g~--~~~~~~~~~~-----~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~  143 (188)
T PRK04040         72 ERIAE-MAGEGPVIVDTHATIKTPAGY--LPGLPEWVLE-----ELNPDVIVLIEADPDEILMRRLRDETRRRDVETEED  143 (188)
T ss_pred             HHHHH-hhcCCCEEEeeeeeeccCCCC--cCCCCHHHHh-----hcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHH
Confidence            22222 23455688898753  11111  1245544443     23799999999999999888763   3232332   


Q ss_pred             HHHHHHHHHHHHh----hhC-CCeEEEcCCCCHHHHHHHHHHHH
Q 025041          202 LEFQRKVAQCYQM----LRD-SSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       202 ~~~~~rv~~~y~~----l~~-~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                      .++.......|..    ... +.++++|.++-+|+.+++|.+.|
T Consensus       144 I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii  187 (188)
T PRK04040        144 IEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL  187 (188)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence            3444444444432    222 33455665555999999998876

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.39  E-value=4.8e-12  Score=105.87  Aligned_cols=169  Identities=13%  Similarity=0.082  Sum_probs=93.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHH-----------hCCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL-----------SNQSHLDDHTIHLLFSA  123 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l-----------~~~~~~~~~~~~ll~~a  123 (259)
                      |.+|+|.||+||||||+++.|+..+..   .+......... +......+++           ..+ .+.   +...+.-
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~g   73 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITR-PASAGSENHIALSEQEFFTRAGQN-LFA---LSWHANG   73 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCC-ccchhHHhheeEcHHHHHHHHHCC-chh---hHHHHhC
Confidence            678999999999999999999887642   22221110000 0001111111           110 000   0001111


Q ss_pred             hHHHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHH
Q 025041          124 NRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLE  203 (259)
Q Consensus       124 ~r~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~  203 (259)
                      +.|.....+...++.|..||+|+.    ..+          ...+...++.+-.+|||++|++++.+|+..|+.. ...+
T Consensus        74 ~~yg~~~~~~~~l~~g~~VI~~G~----~~~----------~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~-~~~~  138 (186)
T PRK10078         74 LYYGVGIEIDLWLHAGFDVLVNGS----RAH----------LPQARARYQSALLPVCLQVSPEILRQRLENRGRE-NASE  138 (186)
T ss_pred             CccCCcHHHHHHHhCCCEEEEeCh----HHH----------HHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCC-CHHH
Confidence            111112235667778888888643    111          1112223445668899999999999999765322 1223


Q ss_pred             HHHHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhh
Q 025041          204 FQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTAC  247 (259)
Q Consensus       204 ~~~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~  247 (259)
                      ...++.... .......++||+++++++++++|.+.+..--+++
T Consensus       139 i~~rl~r~~-~~~~ad~~vi~~~~s~ee~~~~i~~~l~~~~~~~  181 (186)
T PRK10078        139 INARLARAA-RYQPQDCHTLNNDGSLRQSVDTLLTLLHLSQKEK  181 (186)
T ss_pred             HHHHHHHhh-hhccCCEEEEeCCCCHHHHHHHHHHHHhhcCccc
Confidence            444543321 1112467889988999999999998876544433

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.38  E-value=1.1e-11  Score=101.98  Aligned_cols=64  Identities=23%  Similarity=0.212  Sum_probs=47.6

Q ss_pred             CCEEEEEeCCHHHHHhhcCCCCC----------Ccc--hHHHHHHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          175 PDSVLYLDIPPEKAAERGGYGGE----------RYE--HLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       175 PdlvI~Ld~~~e~~~~R~~~R~d----------~~e--~~~~~~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      .+++|||++|++++.+|+..|..          .++  ..+++++....|....   .++||+++++++|+++|.+.+.
T Consensus        94 ~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a---~~~Id~~~~~e~v~~~i~~~l~  169 (171)
T PRK03731         94 NGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVA---HHIIDATQPPSQVVSEILSALA  169 (171)
T ss_pred             CCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhC---CEEEcCCCCHHHHHHHHHHHHh
Confidence            56899999999999999976421          111  1345555556676543   4899999999999999998875

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.38  E-value=4.5e-12  Score=103.50  Aligned_cols=145  Identities=22%  Similarity=0.218  Sum_probs=84.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHH--HhCCC-CCCHHHHHHHHHHhHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAY--LSNQS-HLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~--l~~~~-~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      |+|+|+|.||+||||+|+.|+ .+   |+.++...         +.+++.  +...+ .....    .+..+.  ....+
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~l---g~~~i~l~---------el~~e~~~~~~~de~r~s~----~vD~d~--~~~~l   61 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-EL---GYKVIELN---------ELAKENGLYTEYDELRKSV----IVDVDK--LRKRL   61 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-Hh---CCceeeHH---------HHHHhcCCeeccCCccceE----EeeHHH--HHHHH
Confidence            589999999999999999998 66   56665432         332221  11110 00000    000000  00122


Q ss_pred             HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY  212 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y  212 (259)
                      .+.+.++ ..|+|..+    +                ..++.+|++|.|.++|+++.+|+..|+-.  ....++++....
T Consensus        62 e~~~~~~-~~Ivd~H~----~----------------hl~~~~dlVvVLR~~p~~L~~RLk~RGy~--~eKI~ENveAEi  118 (180)
T COG1936          62 EELLREG-SGIVDSHL----S----------------HLLPDCDLVVVLRADPEVLYERLKGRGYS--EEKILENVEAEI  118 (180)
T ss_pred             HHHhccC-CeEeechh----h----------------hcCCCCCEEEEEcCCHHHHHHHHHHcCCC--HHHHHHHHHHHH
Confidence            3333334 35555432    1                12346899999999999999999987533  222333332211


Q ss_pred             -----HhhhC--CCeEEEcC-CCCHHHHHHHHHHHHHH
Q 025041          213 -----QMLRD--SSWKIIDA-CQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       213 -----~~l~~--~~~~vIDa-~~s~eev~~~I~~~i~~  242 (259)
                           .+..+  ..++.||+ +.+++++++.|.+++..
T Consensus       119 ~~vi~~EA~E~~~~v~evdtt~~s~ee~~~~i~~ii~~  156 (180)
T COG1936         119 LDVILIEAVERFEAVIEVDTTNRSPEEVAEEIIDIIGG  156 (180)
T ss_pred             HHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHcc
Confidence                 11111  57899996 68999999999999886

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.37  E-value=3.2e-11  Score=97.42  Aligned_cols=157  Identities=18%  Similarity=0.194  Sum_probs=90.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH---HH-H
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK---RS-M  131 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~---~~-~  131 (259)
                      ++|+|.|+|||||||++..|+++|   |++++.         .|..+|++-.+- .++- .+...++....+.   .+ .
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~---gl~~vs---------aG~iFR~~A~e~-gmsl-~ef~~~AE~~p~iD~~iD~r   66 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHL---GLKLVS---------AGTIFREMARER-GMSL-EEFSRYAEEDPEIDKEIDRR   66 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHh---CCceee---------ccHHHHHHHHHc-CCCH-HHHHHHHhcCchhhHHHHHH
Confidence            579999999999999999999999   565552         134455543322 1221 1111122111111   11 1


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC-Ccch--HHHHHH-
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE-RYEH--LEFQRK-  207 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d-~~e~--~~~~~r-  207 (259)
                      ......+|++ |+++.    ++         .|+..     ..+|+.|||.+|.++-.+|+..|.. .++.  .+...| 
T Consensus        67 q~e~a~~~nv-Vlegr----LA---------~Wi~k-----~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE  127 (179)
T COG1102          67 QKELAKEGNV-VLEGR----LA---------GWIVR-----EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVERE  127 (179)
T ss_pred             HHHHHHcCCe-EEhhh----hH---------HHHhc-----cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            1222235554 44432    22         34431     5789999999999999999987732 2221  111111 


Q ss_pred             --HHHHHHhhhC---C--C--eEEEcCC-CCHHHHHHHHHHHHHHHHh
Q 025041          208 --VAQCYQMLRD---S--S--WKIIDAC-QSIEDVEKQLKEIVLDQVT  245 (259)
Q Consensus       208 --v~~~y~~l~~---~--~--~~vIDa~-~s~eev~~~I~~~i~~~l~  245 (259)
                        -.+.|+++..   .  .  -++||++ .++++|..-|..+++....
T Consensus       128 ~se~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~  175 (179)
T COG1102         128 ESEKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSI  175 (179)
T ss_pred             HHHHHHHHHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhcc
Confidence              1234555432   1  1  2689985 6899999888888876543

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.36  E-value=6.7e-11  Score=96.51  Aligned_cols=157  Identities=17%  Similarity=0.143  Sum_probs=84.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHh
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLK  137 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~l~  137 (259)
                      |++.|++||||||+++.|++.++   ..+  ++.-..  .....++...... .+.+......+.    ...+.+...+.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~---~~~--v~~D~~--~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~l~   68 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG---AKF--IEGDDL--HPAANIEKMSAGI-PLNDDDRWPWLQ----NLNDASTAAAA   68 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC---CeE--EeCccc--cChHHHHHHHcCC-CCChhhHHHHHH----HHHHHHHHHHh
Confidence            57889999999999999999984   222  221110  0011122222211 121111100110    01122334455


Q ss_pred             cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHhhh-
Q 025041          138 AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLR-  216 (259)
Q Consensus       138 ~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l~-  216 (259)
                      .|..+|+|-...+ -.|.       +++.    ....+-.+|||++|++++.+|+..|.......+   .+...|..+. 
T Consensus        69 ~~~~~Vi~~t~~~-~~~r-------~~~~----~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~---~i~~~~~~~~~  133 (163)
T TIGR01313        69 KNKVGIITCSALK-RHYR-------DILR----EAEPNLHFIYLSGDKDVILERMKARKGHFMKAD---MLESQFAALEE  133 (163)
T ss_pred             cCCCEEEEecccH-HHHH-------HHHH----hcCCCEEEEEEeCCHHHHHHHHHhccCCCCCHH---HHHHHHHHhCC
Confidence            5654455432221 1111       2222    223344579999999999999988754322222   2444444332 


Q ss_pred             ----CCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          217 ----DSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       217 ----~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                          +..+++||+++++|++.++|.+.|.
T Consensus       134 ~~~~e~~~~~id~~~~~~~~~~~~~~~~~  162 (163)
T TIGR01313       134 PLADETDVLRVDIDQPLEGVEEDCIAVVL  162 (163)
T ss_pred             CCCCCCceEEEECCCCHHHHHHHHHHHHh
Confidence                1478999999999999999998763

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK01184 hypothetical protein; Provisional

Probab=99.34  E-value=2.1e-10  Score=95.50  Aligned_cols=166  Identities=11%  Similarity=0.132  Sum_probs=89.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC-C-CCH-HHHHHHHHHhHH--HHH-
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS-H-LDD-HTIHLLFSANRW--EKR-  129 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~-~-~~~-~~~~ll~~a~r~--~~~-  129 (259)
                      ++|++.|++||||||++. +++++   |+.++..         |+.+++.+...+ . ... ......-....+  ... 
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~---g~~~i~~---------~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   68 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREM---GIPVVVM---------GDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVA   68 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHc---CCcEEEh---------hHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHH
Confidence            489999999999999986 55544   5555422         355555543211 1 100 000000000000  001 


Q ss_pred             HHHHHHHh--cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC---CcchHHH
Q 025041          130 SMMEAKLK--AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE---RYEHLEF  204 (259)
Q Consensus       130 ~~i~~~l~--~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d---~~e~~~~  204 (259)
                      ..+.+.+.  .+..||+|.+ .. .          .+...+...++.+..+|++++|+++..+|+..|+.   .....++
T Consensus        69 ~~~~~~i~~~~~~~vvidg~-r~-~----------~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~  136 (184)
T PRK01184         69 KRTVPKIREKGDEVVVIDGV-RG-D----------AEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEEL  136 (184)
T ss_pred             HHHHHHHHhcCCCcEEEeCC-CC-H----------HHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHH
Confidence            12223333  3578888876 21 1          11222222334567899999999999999986631   1112234


Q ss_pred             HHHHHHH--H--HhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 025041          205 QRKVAQC--Y--QMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       205 ~~rv~~~--y--~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~  246 (259)
                      ..+...+  +  .+.....-++||++.++++..++|.+.+..++..
T Consensus       137 ~~r~~~q~~~~~~~~~~~ad~vI~N~~~~~~l~~~v~~~~~~~~~~  182 (184)
T PRK01184        137 EERDERELSWGIGEVIALADYMIVNDSTLEEFRARVRKLLERILRS  182 (184)
T ss_pred             HHHHHHHhccCHHHHHHhcCEEEeCCCCHHHHHHHHHHHHHHHhcc
Confidence            4443332  1  0111112256777889999999999988776643

>PRK13946 shikimate kinase; Provisional

Probab=99.33  E-value=1.7e-10  Score=96.41  Aligned_cols=166  Identities=16%  Similarity=0.135  Sum_probs=90.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH-H-HHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW-E-KRS  130 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~-~-~~~  130 (259)
                      ...+.|++.|++||||||+++.|+++|   |++++..+         ..+....  +  .+.....-.+....+ . ...
T Consensus         8 ~~~~~I~l~G~~GsGKsti~~~LA~~L---g~~~id~D---------~~~~~~~--g--~~~~e~~~~~ge~~~~~~e~~   71 (184)
T PRK13946          8 LGKRTVVLVGLMGAGKSTVGRRLATML---GLPFLDAD---------TEIERAA--R--MTIAEIFAAYGEPEFRDLERR   71 (184)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHHHc---CCCeECcC---------HHHHHHh--C--CCHHHHHHHHCHHHHHHHHHH
Confidence            356789999999999999999999999   44444221         1111111  1  111000000000001 0 112


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCc-----chHHHH
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERY-----EHLEFQ  205 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~-----e~~~~~  205 (259)
                      .+...+..+..||..|.-  .  |     +..+....+.    .-.++|||++|++++.+|+..|..+-     +..+..
T Consensus        72 ~l~~l~~~~~~Vi~~ggg--~--~-----~~~~~r~~l~----~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i  138 (184)
T PRK13946         72 VIARLLKGGPLVLATGGG--A--F-----MNEETRAAIA----EKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETL  138 (184)
T ss_pred             HHHHHHhcCCeEEECCCC--C--c-----CCHHHHHHHH----cCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHH
Confidence            344555566778876531  0  1     0111111111    12488999999999999998764431     112333


Q ss_pred             HHHHHHHHhhh-CCCeEEEcCCCCHHHHHHHHHHHHHHHHhhh
Q 025041          206 RKVAQCYQMLR-DSSWKIIDACQSIEDVEKQLKEIVLDQVTAC  247 (259)
Q Consensus       206 ~rv~~~y~~l~-~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~  247 (259)
                      +++.+....+. ..++++.+++.+++++++.|.+.+..+++..
T Consensus       139 ~~~~~~R~~~y~~~dl~i~~~~~~~~~~~~~i~~~i~~~~~~~  181 (184)
T PRK13946        139 ARLMEERYPVYAEADLTVASRDVPKEVMADEVIEALAAYLEKE  181 (184)
T ss_pred             HHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHhhccc
Confidence            33222222111 2345444457899999999999998877654

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.33  E-value=9.2e-11  Score=97.11  Aligned_cols=162  Identities=18%  Similarity=0.082  Sum_probs=88.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHh--------CC--CCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLS--------NQ--SHLDDHTIHLLFSA  123 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~--------~~--~~~~~~~~~ll~~a  123 (259)
                      +|++|++.|++||||||+++.|++.+....+.+. .      ..+-..+.....        ++  ...........|.+
T Consensus         1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~-~------D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   73 (175)
T cd00227           1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFG-V------DSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGA   73 (175)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccC-c------cHHHHhcChhhcccccccccCccCCcccchHHHHHHHH
Confidence            4789999999999999999999998853221110 0      000011100000        00  00000000011111


Q ss_pred             hHHHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHH-hhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchH
Q 025041          124 NRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCK-APEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHL  202 (259)
Q Consensus       124 ~r~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~-~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~  202 (259)
                      .    ...+...+++|..||+|--....           .+.. .+......|-..|+|++|++++.+|...|++...  
T Consensus        74 ~----~~~~~~~l~~G~~VIvD~~~~~~-----------~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~~--  136 (175)
T cd00227          74 W----YEAVAAMARAGANVIADDVFLGR-----------AALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRVP--  136 (175)
T ss_pred             H----HHHHHHHHhCCCcEEEeeeccCC-----------HHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCccc--
Confidence            1    13355677889999998432210           1111 1111223466899999999999999988765422  


Q ss_pred             HHHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHH
Q 025041          203 EFQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIV  240 (259)
Q Consensus       203 ~~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i  240 (259)
                      .........+... ....++||++ .|++|++++|.+.|
T Consensus       137 ~~~~~~~~~~~~~-~~~dl~iDts~~s~~e~a~~i~~~l  174 (175)
T cd00227         137 GQARKQARVVHAG-VEYDLEVDTTHKTPIECARAIAARV  174 (175)
T ss_pred             hHHHHHHHHhcCC-CcceEEEECCCCCHHHHHHHHHHhc
Confidence            1111111112111 1246899987 58999999998765

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.32  E-value=5.6e-11  Score=94.65  Aligned_cols=150  Identities=18%  Similarity=0.163  Sum_probs=93.3

Q ss_pred             EcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHH----HH
Q 025041           61 EGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEA----KL  136 (259)
Q Consensus        61 eG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~----~l  136 (259)
                      .|..||||||++..|+++|+...+.-..+     ..  .+.|.++ ..+.++++        .+|+.+++.+..    ..
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdl-----Hp--~aNi~KM-~~GiPL~D--------dDR~pWL~~l~~~~~~~~   64 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDL-----HP--PANIEKM-SAGIPLND--------DDRWPWLEALGDAAASLA   64 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceeccccc-----CC--HHHHHHH-hCCCCCCc--------chhhHHHHHHHHHHHHhh
Confidence            48999999999999999997532211111     11  2556665 33444433        133333222222    22


Q ss_pred             hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCC-EEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHhh
Q 025041          137 KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPD-SVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML  215 (259)
Q Consensus       137 ~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~Pd-lvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l  215 (259)
                      ..|..+|+   .+|.+..++     .+.++     ...|+ .+|||+.+++++.+|...|...|.+.+.   +.++|..|
T Consensus        65 ~~~~~~vi---~CSALKr~Y-----RD~LR-----~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~l---l~SQfa~L  128 (161)
T COG3265          65 QKNKHVVI---ACSALKRSY-----RDLLR-----EANPGLRFVYLDGDFDLILERMKARKGHFMPASL---LDSQFATL  128 (161)
T ss_pred             cCCCceEE---ecHHHHHHH-----HHHHh-----ccCCCeEEEEecCCHHHHHHHHHhcccCCCCHHH---HHHHHHHh
Confidence            33443333   145443221     12232     12344 5899999999999999999887776544   35666665


Q ss_pred             hC----CCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          216 RD----SSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       216 ~~----~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      ..    ..+++||.++++|++++++.+.|..
T Consensus       129 E~P~~de~vi~idi~~~~e~vv~~~~~~l~~  159 (161)
T COG3265         129 EEPGADEDVLTIDIDQPPEEVVAQALAWLKE  159 (161)
T ss_pred             cCCCCCCCEEEeeCCCCHHHHHHHHHHHHhc
Confidence            43    4789999999999999999988764

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.32  E-value=7.1e-11  Score=97.84  Aligned_cols=167  Identities=14%  Similarity=0.118  Sum_probs=88.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCC-CeEE--EE-ecCCCC-ChH----HHHHHHHHhCCCCCCHHHHHHHHHHhH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLG-HSVE--LW-RFPDRT-TSV----GQMISAYLSNQSHLDDHTIHLLFSANR  125 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g-~~v~--~~-~~p~~~-~~~----g~~ir~~l~~~~~~~~~~~~ll~~a~r  125 (259)
                      |.+|+|.|++||||||+++.|+..+...| ..+.  .+ +.+..+ ...    .+.+......+ .+.....   +....
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~   76 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGG-AFALSWQ---AHGLS   76 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCC-CEEEEEe---ecCcc
Confidence            46899999999999999999999886443 2111  11 111100 000    11111111111 1100000   00000


Q ss_pred             HHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHH
Q 025041          126 WEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQ  205 (259)
Q Consensus       126 ~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~  205 (259)
                      +.....+...+.+|..||+|....    +          .......+ ...++|||++|++++.+|+..|+... ..++.
T Consensus        77 ~g~~~~i~~~~~~g~~vv~~g~~~----~----------~~~~~~~~-~~~~~i~l~~~~~~~~~Rl~~R~~~~-~~~~~  140 (179)
T TIGR02322        77 YGIPAEIDQWLEAGDVVVVNGSRA----V----------LPEARQRY-PNLLVVNITASPDVLAQRLAARGRES-REEIE  140 (179)
T ss_pred             ccChHHHHHHHhcCCEEEEECCHH----H----------HHHHHHHC-CCcEEEEEECCHHHHHHHHHHcCCCC-HHHHH
Confidence            000012234456788888875411    1          11111112 24489999999999999998764322 22344


Q ss_pred             HHHHHHHHhh-hCCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          206 RKVAQCYQML-RDSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       206 ~rv~~~y~~l-~~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      +++....... ....+++||++++++++.++|.+.+.
T Consensus       141 ~rl~~~~~~~~~~~~~~vi~~~~~~ee~~~~i~~~l~  177 (179)
T TIGR02322       141 ERLARSARFAAAPADVTTIDNSGSLEVAGETLLRLLR  177 (179)
T ss_pred             HHHHHHhhcccccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence            4443322111 23567889999999999999998774

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.30  E-value=7.4e-11  Score=98.33  Aligned_cols=166  Identities=17%  Similarity=0.166  Sum_probs=92.1

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      +..+|.+|+|.|++||||||+++.|...+...|..++.+.        ++.+++.+.....+.+....-.+  .+.  ..
T Consensus        14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~--------~d~~r~~l~~~~~~~~~~~~~~~--~~~--~~   81 (184)
T TIGR00455        14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLD--------GDNVRHGLNKDLGFSEEDRKENI--RRI--GE   81 (184)
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC--------ChHHHhhhccccCCCHHHHHHHH--HHH--HH
Confidence            3468999999999999999999999999987776655543        12334333322222221110000  010  01


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcchHHHHHH
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYEHLEFQRK  207 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e~~~~~~r  207 (259)
                      .....+.+|.+||+|-... . .+.      .+.+..+...  .+..+|||++|++++.+|...+.   .+.+....+..
T Consensus        82 ~~~~~~~~G~~VI~d~~~~-~-~~~------r~~~~~~~~~--~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~  151 (184)
T TIGR00455        82 VAKLFVRNGIIVITSFISP-Y-RAD------RQMVRELIEK--GEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTG  151 (184)
T ss_pred             HHHHHHcCCCEEEEecCCC-C-HHH------HHHHHHhCcC--CCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCccc
Confidence            2234457899999984211 1 110      1222222222  26689999999999999943110   00000001111


Q ss_pred             HHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHH
Q 025041          208 VAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEI  239 (259)
Q Consensus       208 v~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~  239 (259)
                      ....|..+. ...++||++ .++++++++|.+.
T Consensus       152 ~~~~y~~p~-~adl~Idt~~~~~~~~~~~i~~~  183 (184)
T TIGR00455       152 IDSPYEAPE-NPEVVLDTDQNDREECVGQIIEK  183 (184)
T ss_pred             ccCCCCCCC-CCcEEEECCCCCHHHHHHHHHHh
Confidence            223343221 245889975 6999999998764

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.29  E-value=8e-11  Score=104.18  Aligned_cols=157  Identities=24%  Similarity=0.306  Sum_probs=85.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK  135 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~  135 (259)
                      +||+|+|.|||||||+|+.|++.+...+..++++..        +.+.  +......+...+-.    .|......++..
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~--------~~~~--~~~~~y~~~~~Ek~----~R~~l~s~v~r~   67 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISD--------DSLG--IDRNDYADSKKEKE----ARGSLKSAVERA   67 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-T--------HHHH---TTSSS--GGGHHH----HHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcc--------cccc--cchhhhhchhhhHH----HHHHHHHHHHHh
Confidence            589999999999999999999999988888877652        1111  12111111111111    122223456677


Q ss_pred             HhcCCeEEEccccc-chhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--cchHHHHHHHHHHH
Q 025041          136 LKAGTTLIVDRYSY-SGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--YEHLEFQRKVAQCY  212 (259)
Q Consensus       136 l~~g~~VI~DR~~~-s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~e~~~~~~rv~~~y  212 (259)
                      +.++.+||+|.-.| .++-|.        + -.+.+....+..+||+++|.+.+.+|...|.+.  |. .+.+.++...|
T Consensus        68 ls~~~iVI~Dd~nYiKg~RYe--------l-yclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~-~e~i~~m~~Rf  137 (270)
T PF08433_consen   68 LSKDTIVILDDNNYIKGMRYE--------L-YCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYP-EETIDDMIQRF  137 (270)
T ss_dssp             HTT-SEEEE-S---SHHHHHH--------H-HHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S--HHHHHHHHHH-
T ss_pred             hccCeEEEEeCCchHHHHHHH--------H-HHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCC-HHHHHHHHHHh
Confidence            77889999996443 333332        2 223455677889999999999999999877544  53 46777888888


Q ss_pred             HhhhC-----CCeEEEcC---CCCHHHHHHHH
Q 025041          213 QMLRD-----SSWKIIDA---CQSIEDVEKQL  236 (259)
Q Consensus       213 ~~l~~-----~~~~vIDa---~~s~eev~~~I  236 (259)
                      +....     .+..+|+.   ..+.+++++.|
T Consensus       138 E~P~~~nrWD~plf~i~~~~~~~~~~~I~~~l  169 (270)
T PF08433_consen  138 EEPDPKNRWDSPLFTIDSSDEELPLEEIWNAL  169 (270)
T ss_dssp             --TTSS-GGGS-SEEEE-TTS---HHHHHHHH
T ss_pred             cCCCCCCCccCCeEEEecCCCCCCHHHHHHHH
Confidence            77532     24566663   24556666666

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.27  E-value=4.2e-10  Score=92.09  Aligned_cols=160  Identities=18%  Similarity=0.116  Sum_probs=82.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH-HH-H
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW-EK-R  129 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~-~~-~  129 (259)
                      |++++.|+|.|++||||||+++.|++.++   +.++...         ..++...  +..+......  +....+ +. .
T Consensus         1 ~~~~~~i~l~G~~GsGKstla~~La~~l~---~~~~d~d---------~~~~~~~--g~~~~~~~~~--~g~~~~~~~~~   64 (175)
T PRK00131          1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLG---YDFIDTD---------HLIEARA--GKSIPEIFEE--EGEAAFRELEE   64 (175)
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHHHhC---CCEEECh---------HHHHHHc--CCCHHHHHHH--HCHHHHHHHHH
Confidence            46789999999999999999999999994   4333211         1111111  1011100000  000000 01 1


Q ss_pred             HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--cc---hHHH
Q 025041          130 SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--YE---HLEF  204 (259)
Q Consensus       130 ~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~e---~~~~  204 (259)
                      ..+.........||..+.   +.++      +......+    ....++|||++|++++.+|+..+..+  ..   ..+.
T Consensus        65 ~~~~~l~~~~~~vi~~g~---~~~~------~~~~r~~l----~~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~  131 (175)
T PRK00131         65 EVLAELLARHNLVISTGG---GAVL------REENRALL----RERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEK  131 (175)
T ss_pred             HHHHHHHhcCCCEEEeCC---CEee------cHHHHHHH----HhCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHH
Confidence            222333333334444321   1111      11111111    12358999999999999999764322  11   1111


Q ss_pred             ----HHHHHHHHHhhhCCCeEEEcC-CCCHHHHHHHHHHHHHHH
Q 025041          205 ----QRKVAQCYQMLRDSSWKIIDA-CQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       205 ----~~rv~~~y~~l~~~~~~vIDa-~~s~eev~~~I~~~i~~~  243 (259)
                          .+.....|.+..   -++||+ +.+++++++.|.+.|..+
T Consensus       132 ~~~~~~~~~~~~~~~~---dl~idt~~~~~~e~~~~I~~~v~~~  172 (175)
T PRK00131        132 LRDLYEERDPLYEEVA---DITVETDGRSPEEVVNEILEKLEAA  172 (175)
T ss_pred             HHHHHHHHHHHHHhhc---CeEEeCCCCCHHHHHHHHHHHHHhh
Confidence                111122233322   267886 589999999999988643

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.26  E-value=2.3e-11  Score=100.58  Aligned_cols=167  Identities=20%  Similarity=0.288  Sum_probs=98.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE-EecCCCCChHH--------HHHHHHHhCCCCCCHHHHHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL-WRFPDRTTSVG--------QMISAYLSNQSHLDDHTIHLLFSAN  124 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~-~~~p~~~~~~g--------~~ir~~l~~~~~~~~~~~~ll~~a~  124 (259)
                      +|++|+|.||+|+||||+++.|.+.. ...++|.. ++.|..+..-|        +.+.++...+ .+-.++   .|..+
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~-~fLE~a---~~~gn   77 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERD-EFLEWA---EYHGN   77 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcC-CcEEEE---EEcCC
Confidence            89999999999999999999999988 44566653 45554332211        2222222221 111110   11123


Q ss_pred             HHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCC-HHHHHhhcCCCCCCcchH
Q 025041          125 RWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIP-PEKAAERGGYGGERYEHL  202 (259)
Q Consensus       125 r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~-~e~~~~R~~~R~d~~e~~  202 (259)
                      .|.. ...+...++.|..||+|=      -+|+        ..++....| +-..||+..| .+++.+|+..|+..-+ .
T Consensus        78 yYGT~~~~ve~~~~~G~~vildI------d~qG--------a~qvk~~~p-~~v~IFi~pPs~eeL~~RL~~Rgtds~-e  141 (191)
T COG0194          78 YYGTSREPVEQALAEGKDVILDI------DVQG--------ALQVKKKMP-NAVSIFILPPSLEELERRLKGRGTDSE-E  141 (191)
T ss_pred             cccCcHHHHHHHHhcCCeEEEEE------ehHH--------HHHHHHhCC-CeEEEEEcCCCHHHHHHHHHccCCCCH-H
Confidence            3333 245667788898899872      2332        222233333 3345555444 3446778887764322 3


Q ss_pred             HHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          203 EFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       203 ~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                      ...+|+..++.++..   .++++||.  ++|..++++..++..-
T Consensus       142 ~I~~Rl~~a~~Ei~~~~~fdyvivNd--d~e~a~~~l~~ii~ae  183 (191)
T COG0194         142 VIARRLENAKKEISHADEFDYVIVND--DLEKALEELKSIILAE  183 (191)
T ss_pred             HHHHHHHHHHHHHHHHHhCCEEEECc--cHHHHHHHHHHHHHHH
Confidence            566788888877643   67888875  5888888888877643

>PRK13947 shikimate kinase; Provisional

Probab=99.26  E-value=4.3e-10  Score=92.26  Aligned_cols=155  Identities=16%  Similarity=0.144  Sum_probs=78.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKL  136 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~l  136 (259)
                      -|+|.|++||||||+++.|++.|+   ++++..+... ....|..+.+++...+.      ..+    +......++...
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg---~~~id~d~~~-~~~~g~~~~~~~~~~ge------~~~----~~~e~~~~~~l~   68 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLS---FGFIDTDKEI-EKMTGMTVAEIFEKDGE------VRF----RSEEKLLVKKLA   68 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC---CCEEECchhh-hhhcCCcHHHHHHHhCh------HHH----HHHHHHHHHHHh
Confidence            489999999999999999999994   4444322100 00001111122221110      001    100011222233


Q ss_pred             hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--cchHHHHHHHHHHHHh
Q 025041          137 KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--YEHLEFQRKVAQCYQM  214 (259)
Q Consensus       137 ~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~e~~~~~~rv~~~y~~  214 (259)
                      ..+..||..+.   +      ..++.+.+..+.    ..+++|||++|++++.+|+..|..+  ....++.+++.+.|.+
T Consensus        69 ~~~~~vi~~g~---g------~vl~~~~~~~l~----~~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~  135 (171)
T PRK13947         69 RLKNLVIATGG---G------VVLNPENVVQLR----KNGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKE  135 (171)
T ss_pred             hcCCeEEECCC---C------CcCCHHHHHHHH----hCCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHH
Confidence            34455664221   1      112222232222    2257999999999999999765333  1111223333333322


Q ss_pred             hh----CCCeEEEc-CCCCHHHHHHHHHHH
Q 025041          215 LR----DSSWKIID-ACQSIEDVEKQLKEI  239 (259)
Q Consensus       215 l~----~~~~~vID-a~~s~eev~~~I~~~  239 (259)
                      ..    ..+ ++|| ++.++++++++|.+.
T Consensus       136 r~~~y~~ad-~~Idt~~~~~~~i~~~I~~~  164 (171)
T PRK13947        136 REPFYDFAD-YTIDTGDMTIDEVAEEIIKA  164 (171)
T ss_pred             HHHHHHhcC-EEEECCCCCHHHHHHHHHHH
Confidence            11    123 5555 568999999999983

>PRK04182 cytidylate kinase; Provisional

Probab=99.26  E-value=5.5e-10  Score=91.97  Aligned_cols=71  Identities=23%  Similarity=0.138  Sum_probs=46.0

Q ss_pred             CCEEEEEeCCHHHHHhhcCCCCCC-cc-hHHHH----HHHHHHHHhhh-----C--CCeEEEcCC-CCHHHHHHHHHHHH
Q 025041          175 PDSVLYLDIPPEKAAERGGYGGER-YE-HLEFQ----RKVAQCYQMLR-----D--SSWKIIDAC-QSIEDVEKQLKEIV  240 (259)
Q Consensus       175 PdlvI~Ld~~~e~~~~R~~~R~d~-~e-~~~~~----~rv~~~y~~l~-----~--~~~~vIDa~-~s~eev~~~I~~~i  240 (259)
                      ++++|||++|++++.+|+..|..+ .+ .....    ....+.|..+.     +  .--++||++ .+++++++.|.+.+
T Consensus        92 ~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~~  171 (180)
T PRK04182         92 ADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLVINTSRWDPEGVFDIILTAI  171 (180)
T ss_pred             CCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHHHHHH
Confidence            789999999999999999876432 11 11111    11122333321     1  122788975 69999999999998


Q ss_pred             HHHHh
Q 025041          241 LDQVT  245 (259)
Q Consensus       241 ~~~l~  245 (259)
                      .....
T Consensus       172 ~~~~~  176 (180)
T PRK04182        172 DKLLK  176 (180)
T ss_pred             HHHhc
Confidence            76544

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.26  E-value=2.4e-10  Score=102.26  Aligned_cols=153  Identities=16%  Similarity=0.128  Sum_probs=84.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCC-----CCHHHHHHHHHHhHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSH-----LDDHTIHLLFSANRWEKR  129 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~-----~~~~~~~ll~~a~r~~~~  129 (259)
                      +++|++.|++||||||+|+.|++++.  +.  ..++.        +.++..+.....     ........+..+    ..
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~--~~--~~l~~--------D~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~   65 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNP--KA--VNVNR--------DDLRQSLFGHGEWGEYKFTKEKEDLVTKA----QE   65 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCC--CC--EEEec--------cHHHHHhcCCCcccccccChHHHHHHHHH----HH
Confidence            46899999999999999999999883  22  22221        223333221111     111111111100    11


Q ss_pred             HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHH
Q 025041          130 SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVA  209 (259)
Q Consensus       130 ~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~  209 (259)
                      ..+...+..|..||+|.+..+....        +.+..+......+-.+|+|++|.+++.+|+..|+...-+.+..+++.
T Consensus        66 ~~~~~~l~~g~~vIid~~~~~~~~~--------~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~  137 (300)
T PHA02530         66 AAALAALKSGKSVIISDTNLNPERR--------RKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERAVPEDVLRSMF  137 (300)
T ss_pred             HHHHHHHHcCCeEEEeCCCCCHHHH--------HHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCCCCHHHHHHHH
Confidence            2345566788889999776542211        22222222233333479999999999999998854433334444333


Q ss_pred             HHHHhhhC------------CCeEEEcCCCCHHH
Q 025041          210 QCYQMLRD------------SSWKIIDACQSIED  231 (259)
Q Consensus       210 ~~y~~l~~------------~~~~vIDa~~s~ee  231 (259)
                      +.++...+            ...+++|.++++.+
T Consensus       138 ~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~  171 (300)
T PHA02530        138 KQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK  171 (300)
T ss_pred             HHHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence            33332211            35778888777665

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.25  E-value=1.5e-10  Score=94.20  Aligned_cols=115  Identities=24%  Similarity=0.289  Sum_probs=71.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH---H
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR---S  130 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~---~  130 (259)
                      +|.+|+|+|.+||||||+|..|.++|...|+++..++        |+.++..+..+-.++.        .+|.++.   .
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD--------gD~lR~~l~~dl~fs~--------~dR~e~~rr~~   64 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD--------GDNLRHGLNADLGFSK--------EDREENIRRIA   64 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE--------HHHHCTTTTTT--SSH--------HHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec--------CcchhhccCCCCCCCH--------HHHHHHHHHHH
Confidence            5889999999999999999999999999999998876        5666655443222332        1233322   1


Q ss_pred             HH-HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCC
Q 025041          131 MM-EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGY  194 (259)
Q Consensus       131 ~i-~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~  194 (259)
                      .+ +-..++|.+||+.-  .+.  |..    ..++.+.....  .+-+.||+++|.+++.+|-.+
T Consensus        65 ~~A~ll~~~G~ivIva~--isp--~~~----~R~~~R~~~~~--~~f~eVyv~~~~e~~~~RD~K  119 (156)
T PF01583_consen   65 EVAKLLADQGIIVIVAF--ISP--YRE----DREWARELIPN--ERFIEVYVDCPLEVCRKRDPK  119 (156)
T ss_dssp             HHHHHHHHTTSEEEEE--------SHH----HHHHHHHHHHT--TEEEEEEEES-HHHHHHHTTT
T ss_pred             HHHHHHHhCCCeEEEee--ccC--chH----HHHHHHHhCCc--CceEEEEeCCCHHHHHHhCch
Confidence            11 23346899999862  111  111    11333332211  156899999999999999654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.25  E-value=3.8e-10  Score=95.16  Aligned_cols=165  Identities=21%  Similarity=0.226  Sum_probs=92.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC-----CCCChHHHHHHHHHh-----CCCCCCHHHH-HHHHHH-
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP-----DRTTSVGQMISAYLS-----NQSHLDDHTI-HLLFSA-  123 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p-----~~~~~~g~~ir~~l~-----~~~~~~~~~~-~ll~~a-  123 (259)
                      .+|.|+|++||||||+++.|++ +   |+.++..+.-     ..+++..+.+.+.+.     ..+.++.... ..+|.. 
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~---g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~   78 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-L---GAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDP   78 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-c---CCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCH
Confidence            5799999999999999999987 5   6666543211     112333344444332     1234444322 222211 


Q ss_pred             ---hHHHH------HHHHHHHHhc---CCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhh
Q 025041          124 ---NRWEK------RSMMEAKLKA---GTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAER  191 (259)
Q Consensus       124 ---~r~~~------~~~i~~~l~~---g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R  191 (259)
                         .+.+.      ...+...++.   ..+||+|-.    +.|..             ......|.+|++++|+++..+|
T Consensus        79 ~~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~p----ll~e~-------------~~~~~~D~vi~V~a~~e~~~~R  141 (194)
T PRK00081         79 EARKKLEAILHPLIREEILEQLQEAESSPYVVLDIP----LLFEN-------------GLEKLVDRVLVVDAPPETQLER  141 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEeh----HhhcC-------------CchhhCCeEEEEECCHHHHHHH
Confidence               01111      1122222222   246776632    22211             1113479999999999999999


Q ss_pred             cCCCCCCcchHHHHHHHHHHHHhh--hCCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          192 GGYGGERYEHLEFQRKVAQCYQML--RDSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       192 ~~~R~d~~e~~~~~~rv~~~y~~l--~~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      +..| +.+...++..++..+....  ....-++||++++++++.+++.+.+..
T Consensus       142 l~~R-~~~s~e~~~~ri~~Q~~~~~~~~~ad~vI~N~g~~e~l~~qv~~i~~~  193 (194)
T PRK00081        142 LMAR-DGLSEEEAEAIIASQMPREEKLARADDVIDNNGDLEELRKQVERLLQE  193 (194)
T ss_pred             HHHc-CCCCHHHHHHHHHHhCCHHHHHHhCCEEEECCCCHHHHHHHHHHHHHh
Confidence            9876 3344445666665332111  112347889999999999999887643

>PRK06217 hypothetical protein; Validated

Probab=99.25  E-value=1.8e-10  Score=96.04  Aligned_cols=146  Identities=16%  Similarity=0.158  Sum_probs=83.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      +.|+|.|++||||||+++.|++.++   ++++..    ..|. +.+.+        .  .....        .+   ...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~---~~~~~~D~~~~~~~-~~~~~--------~--~~~~~--------~~---~~~   56 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLD---IPHLDTDDYFWLPT-DPPFT--------T--KRPPE--------ER---LRL   56 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC---CcEEEcCceeeccC-CCCcc--------c--cCCHH--------HH---HHH
Confidence            4599999999999999999999984   444322    1221 00000        0  00000        00   111


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC----C-------cc
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE----R-------YE  200 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d----~-------~e  200 (259)
                      +...+..+..+|+|+++..   +          ...   ....+|.+|||++|++++.+|+..|..    +       .+
T Consensus        57 ~~~~~~~~~~~vi~G~~~~---~----------~~~---~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e  120 (183)
T PRK06217         57 LLEDLRPREGWVLSGSALG---W----------GDP---LEPLFDLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMH  120 (183)
T ss_pred             HHHHHhcCCCEEEEccHHH---H----------HHH---HHhhCCEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHH
Confidence            2223333445666766532   1          111   134689999999999999999876531    1       11


Q ss_pred             --hHHHHHHHH------------HHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          201 --HLEFQRKVA------------QCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       201 --~~~~~~rv~------------~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                        ..++++.+.            ..+..+..   ..++++++..+++++.++|...|..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~  179 (183)
T PRK06217        121 KASLEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS  179 (183)
T ss_pred             HHHHHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence              123333321            11122211   4677889999999999999988753

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.23  E-value=3.7e-10  Score=92.85  Aligned_cols=159  Identities=19%  Similarity=0.157  Sum_probs=87.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK  135 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~  135 (259)
                      +-|++.|++||||||+.+.|++.|+   ++.+..+.-- ....|..|.+++...+      +..    -|......++..
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~---~~F~D~D~~I-e~~~g~sI~eIF~~~G------E~~----FR~~E~~vl~~l   68 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALN---LPFIDTDQEI-EKRTGMSIAEIFEEEG------EEG----FRRLETEVLKEL   68 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcC---CCcccchHHH-HHHHCcCHHHHHHHHh------HHH----HHHHHHHHHHHH
Confidence            4589999999999999999999995   3333221000 0000111222222111      000    111111344555


Q ss_pred             HhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCc-----ch----HHHHH
Q 025041          136 LKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERY-----EH----LEFQR  206 (259)
Q Consensus       136 l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~-----e~----~~~~~  206 (259)
                      +..+..||.-+.   +..      +..+-...+.    .--.+|||++|++++.+|+.....|-     .+    .+.++
T Consensus        69 ~~~~~~ViaTGG---G~v------~~~enr~~l~----~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~  135 (172)
T COG0703          69 LEEDNAVIATGG---GAV------LSEENRNLLK----KRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLE  135 (172)
T ss_pred             hhcCCeEEECCC---ccc------cCHHHHHHHH----hCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHH
Confidence            566656775321   100      1112121111    22289999999999999998322220     11    24444


Q ss_pred             HHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          207 KVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       207 rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                      .....|.+.+   .++++++...++++++|.+.+...+
T Consensus       136 ~R~~~Y~e~a---~~~~~~~~~~~~v~~~i~~~l~~~~  170 (172)
T COG0703         136 ERQPLYREVA---DFIIDTDDRSEEVVEEILEALEGSL  170 (172)
T ss_pred             HHHHHHHHhC---cEEecCCCCcHHHHHHHHHHHHHhc
Confidence            4456676654   4788887666999999999887654

>PRK13948 shikimate kinase; Provisional

Probab=99.23  E-value=8.3e-10  Score=92.26  Aligned_cols=160  Identities=15%  Similarity=0.083  Sum_probs=86.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      +.++..|++.|++||||||+++.|++.|+   +.++..+.-. ....|..+.+++...+   .   . .   .|-.....
T Consensus         7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg---~~~iD~D~~i-e~~~g~si~~if~~~G---e---~-~---fR~~E~~~   72 (182)
T PRK13948          7 ERPVTWVALAGFMGTGKSRIGWELSRALM---LHFIDTDRYI-ERVTGKSIPEIFRHLG---E---A-Y---FRRCEAEV   72 (182)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEECCHHH-HHHHhCCHHHHHHHhC---H---H-H---HHHHHHHH
Confidence            46788999999999999999999999984   4444322100 0011222223322211   0   0 0   01000122


Q ss_pred             HHHHHhcCCeEEEccc-ccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--c------ch-
Q 025041          132 MEAKLKAGTTLIVDRY-SYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--Y------EH-  201 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~-~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~------e~-  201 (259)
                      ++..+..+..||.=+. ..          ...+....+.    .-..+|||++|++++.+|+..+ ++  .      +. 
T Consensus        73 l~~l~~~~~~VIa~GgG~v----------~~~~n~~~l~----~~g~vV~L~~~~e~l~~Rl~~~-~RPll~~~~~~~~l  137 (182)
T PRK13948         73 VRRLTRLDYAVISLGGGTF----------MHEENRRKLL----SRGPVVVLWASPETIYERTRPG-DRPLLQVEDPLGRI  137 (182)
T ss_pred             HHHHHhcCCeEEECCCcEE----------cCHHHHHHHH----cCCeEEEEECCHHHHHHHhcCC-CCCCCCCCChHHHH
Confidence            3344444555664211 10          0111111111    1247899999999999999642 21  1      11 


Q ss_pred             HHHHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHHHH
Q 025041          202 LEFQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       202 ~~~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~~l  244 (259)
                      .+.+++....|.. +   -++||++ .++++++++|.+.+..++
T Consensus       138 ~~l~~~R~~~Y~~-a---~~~i~t~~~~~~ei~~~i~~~l~~~~  177 (182)
T PRK13948        138 RTLLNEREPVYRQ-A---TIHVSTDGRRSEEVVEEIVEKLWAWA  177 (182)
T ss_pred             HHHHHHHHHHHHh-C---CEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            1223333445532 3   2677764 799999999999998755

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.21  E-value=7.2e-10  Score=91.75  Aligned_cols=160  Identities=17%  Similarity=0.114  Sum_probs=84.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      .+...|+|.|++||||||++..|++.++   +.++..+... ....|..+..++...   +   .. .|   |......+
T Consensus         2 ~~~~~I~liG~~GaGKStl~~~La~~l~---~~~vd~D~~i-~~~~g~~i~~~~~~~---g---~~-~f---r~~e~~~l   67 (172)
T PRK05057          2 AEKRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEI-EKRTGADIGWVFDVE---G---EE-GF---RDREEKVI   67 (172)
T ss_pred             CCCCEEEEECCCCcCHHHHHHHHHHHcC---CcEEECCchH-HHHhCcCHhHHHHHh---C---HH-HH---HHHHHHHH
Confidence            3456799999999999999999999884   4433222100 000000011111110   0   00 01   10011222


Q ss_pred             HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--c---ch----HH
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--Y---EH----LE  203 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~---e~----~~  203 (259)
                      ......+..||.-+.  + ...      ..+-...    +..-+.+|||++|++++.+|+..+..+  .   +.    ..
T Consensus        68 ~~l~~~~~~vi~~gg--g-~v~------~~~~~~~----l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~  134 (172)
T PRK05057         68 NELTEKQGIVLATGG--G-SVK------SRETRNR----LSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEA  134 (172)
T ss_pred             HHHHhCCCEEEEcCC--c-hhC------CHHHHHH----HHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHH
Confidence            332334445553211  0 110      1111111    123468999999999999999754322  1   11    12


Q ss_pred             HHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 025041          204 FQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD  242 (259)
Q Consensus       204 ~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~  242 (259)
                      +.+.....|.++++   ++||++ .++++++++|.+.+.+
T Consensus       135 l~~~R~~~Y~~~Ad---~~idt~~~s~~ei~~~i~~~l~~  171 (172)
T PRK05057        135 LANERNPLYEEIAD---VTIRTDDQSAKVVANQIIHMLES  171 (172)
T ss_pred             HHHHHHHHHHhhCC---EEEECCCCCHHHHHHHHHHHHhh
Confidence            33444567776665   778875 7999999999887753

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.21  E-value=1.6e-09  Score=90.13  Aligned_cols=168  Identities=17%  Similarity=0.114  Sum_probs=92.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME  133 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~  133 (259)
                      .|.+|+|.|++||||||+++.|...+..     ..++-.....  ...++.....- .+.+. ..+.+. .+...  ...
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-----~~i~gd~~~~--~~~~r~~~~g~-~~~~~-~~~~~~-~~~~~--~~~   69 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA-----KFIDGDDLHP--AKNIDKMSQGI-PLTDE-DRLPWL-ERLND--ASY   69 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC-----EEECCcccCC--HhHHHHHhcCC-CCCcc-cchHHH-HHHHH--HHH
Confidence            4778999999999999999999998853     1222111011  11223332211 11111 000111 11111  111


Q ss_pred             HHHh-cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH
Q 025041          134 AKLK-AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY  212 (259)
Q Consensus       134 ~~l~-~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y  212 (259)
                      ..+. ....+|+..++..             ..+.+......|..+|||++|++++.+|+..|...+.+.+.+..-...+
T Consensus        70 ~~~~~~~~g~iv~s~~~~-------------~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~  136 (176)
T PRK09825         70 SLYKKNETGFIVCSSLKK-------------QYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDAL  136 (176)
T ss_pred             HHHhcCCCEEEEEEecCH-------------HHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHc
Confidence            1112 1223333222211             1112223344577999999999999999998854444444444333333


Q ss_pred             Hhh--hCCCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 025041          213 QML--RDSSWKIIDACQSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       213 ~~l--~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~  246 (259)
                      +..  .+..|+.||++++++++.+++.+.+...+..
T Consensus       137 e~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  172 (176)
T PRK09825        137 ERPCADEHDIARIDVNHDIENVTEQCRQAVQAFRQA  172 (176)
T ss_pred             CCCCCCcCCeEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence            322  1247999999999999999999988776643

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.19  E-value=4.8e-10  Score=92.63  Aligned_cols=164  Identities=18%  Similarity=0.180  Sum_probs=85.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHH-HHHHHHHHhHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDH-TIHLLFSANRWEKRSM  131 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~-~~~ll~~a~r~~~~~~  131 (259)
                      ++|.+|+|.|++||||||+++.|+..+...|..+..++.        +.+++.+..+..+.+. ....+   .+....  
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~--------D~~~~~~~~~~~~~~~~r~~~~---~~~~~~--   68 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG--------DAVRTNLSKGLGFSKEDRDTNI---RRIGFV--   68 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC--------ccHHHHHhcCCCCChhhHHHHH---HHHHHH--
Confidence            478899999999999999999999999877776665531        1222322221111111 00000   000000  


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC---CCCcchH-HHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG---GERYEHL-EFQRK  207 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R---~d~~e~~-~~~~r  207 (259)
                      .......|.+||+|...    .|.       .+...+... ..+-.+|||++|++++.+|....   ..+.+.. .+...
T Consensus        69 a~~~~~~g~~vi~~~~~----~~~-------~~~~~l~~~-~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~  136 (175)
T PRK00889         69 ANLLTRHGVIVLVSAIS----PYR-------ETREEVRAN-IGNFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGI  136 (175)
T ss_pred             HHHHHhCCCEEEEecCC----CCH-------HHHHHHHhh-cCCeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCccc
Confidence            11123568888887321    111       111111111 23457999999999999995210   0000000 00000


Q ss_pred             HHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          208 VAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       208 v~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      ....| ......+.+.+++.++++++++|.+.+.+
T Consensus       137 ~~~~~-~p~~ad~~i~~~~~~~~~~~~~i~~~l~~  170 (175)
T PRK00889        137 DDPYE-PPLNPEVECRTDLESLEESVDKVLQKLEE  170 (175)
T ss_pred             CCCCC-CCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            01111 11112344444567999999999998864

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.18  E-value=6.8e-11  Score=95.46  Aligned_cols=117  Identities=23%  Similarity=0.255  Sum_probs=69.5

Q ss_pred             EEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHH
Q 025041           60 LEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEA  134 (259)
Q Consensus        60 ieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~  134 (259)
                      |.|+|||||||+|+.|+++++   +..+..    + +....++.|+.+++++.++..+++....-+. .      ..+..
T Consensus         1 i~G~PgsGK~t~~~~la~~~~---~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll-~------~~l~~   70 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYG---LVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELL-K------ERLEQ   70 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHT---SEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHH-H------HHHHS
T ss_pred             CcCCCCCChHHHHHHHHHhcC---cceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHH-H------HHHhh
Confidence            579999999999999999984   433321    1 1123567788888888776544432211110 1      11111


Q ss_pred             HHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCC
Q 025041          135 KLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGY  194 (259)
Q Consensus       135 ~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~  194 (259)
                      . .....+|+|+||.+..-..       .+...+......|+.+|+|++|.+.+.+|+..
T Consensus        71 ~-~~~~g~ildGfPrt~~Qa~-------~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   71 P-PCNRGFILDGFPRTLEQAE-------ALEEILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             G-GTTTEEEEESB-SSHHHHH-------HHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             h-cccceeeeeeccccHHHHH-------HHHHHHhhcccchheeeccccchhhhhhhccc
Confidence            1 2346789999998542111       11111223567899999999999999999875

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.18  E-value=3.9e-10  Score=95.28  Aligned_cols=165  Identities=17%  Similarity=0.200  Sum_probs=88.9

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCH--HHHHHHHHHhHHHH
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDD--HTIHLLFSANRWEK  128 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~--~~~~ll~~a~r~~~  128 (259)
                      ..++|.+|+|.|++||||||++..|...+...|..++.++.    ..    +++.+.....+.+  ....+.    +.. 
T Consensus        20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~----d~----~~~~~~~~~~~~~~~~~~~~~----~l~-   86 (198)
T PRK03846         20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG----DN----VRHGLCSDLGFSDADRKENIR----RVG-   86 (198)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcC----Ee----HHhhhhhcCCcCcccHHHHHH----HHH-
Confidence            34689999999999999999999999999777776665541    11    2221111111111  111110    100 


Q ss_pred             HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC----CCcch-HH
Q 025041          129 RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG----ERYEH-LE  203 (259)
Q Consensus       129 ~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~----d~~e~-~~  203 (259)
                       ......+..|.+||.+ +......+       .+++..+...  .+.++|||++|++++.+|.. |+    .+-+. .+
T Consensus        87 -~~a~~~~~~G~~VI~~-~~~~~~~~-------R~~~r~~l~~--~~~i~V~L~~~~e~~~~R~~-r~l~~~~~~~~~~~  154 (198)
T PRK03846         87 -EVAKLMVDAGLVVLTA-FISPHRAE-------RQMVRERLGE--GEFIEVFVDTPLAICEARDP-KGLYKKARAGEIRN  154 (198)
T ss_pred             -HHHHHHhhCCCEEEEE-eCCCCHHH-------HHHHHHHccc--CCEEEEEEcCCHHHHHhcCc-hhHHHHhhcCCccC
Confidence             1122344568778764 22101111       1233322211  23348999999999999942 11    00010 01


Q ss_pred             HHHHHHHHHHhhhCCCeEEEcC-CCCHHHHHHHHHHHHHH
Q 025041          204 FQRKVAQCYQMLRDSSWKIIDA-CQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       204 ~~~rv~~~y~~l~~~~~~vIDa-~~s~eev~~~I~~~i~~  242 (259)
                      +. .....|..+.. .-++||+ ..++++++++|.+.+.+
T Consensus       155 l~-~~r~~Y~~p~~-ad~~Idt~~~~~~~vv~~Il~~l~~  192 (198)
T PRK03846        155 FT-GIDSVYEAPES-PEIHLDTGEQLVTNLVEQLLDYLRQ  192 (198)
T ss_pred             cc-cccccCCCCCC-CCEEEECCCCCHHHHHHHHHHHHHH
Confidence            11 12223643221 2367886 57999999999988753

>PRK08356 hypothetical protein; Provisional

Probab=99.17  E-value=2.6e-09  Score=90.05  Aligned_cols=67  Identities=22%  Similarity=0.322  Sum_probs=41.8

Q ss_pred             CEEEEEeCCHHHHHhhcCCCCCCc----chHHHHHHHH----HHHHh---hhCCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          176 DSVLYLDIPPEKAAERGGYGGERY----EHLEFQRKVA----QCYQM---LRDSSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       176 dlvI~Ld~~~e~~~~R~~~R~d~~----e~~~~~~rv~----~~y~~---l~~~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                      ..+|||++|++++.+|+..|+..-    ...+.+.++.    ..|..   ....++++ +++.+++++.++|.+++..+
T Consensus       116 ~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~aD~vI-~N~~~~e~~~~~i~~~~~~~  193 (195)
T PRK08356        116 GKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKLYHTTKLKDKADFVI-VNEGTLEELRKKVEEILREL  193 (195)
T ss_pred             CEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHhhhhhhHHHhCcEEE-ECCCCHHHHHHHHHHHHHHh
Confidence            589999999999999997664321    1222222221    11211   11134555 44689999999999988654

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.16  E-value=3.3e-10  Score=94.99  Aligned_cols=169  Identities=16%  Similarity=0.187  Sum_probs=92.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEecCCCCChHH--------HHHHHHHhCCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWRFPDRTTSVG--------QMISAYLSNQSHLDDHTIHLLFSA  123 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~~p~~~~~~g--------~~ir~~l~~~~~~~~~~~~ll~~a  123 (259)
                      .+|++|+|.||+||||||+++.|.+.+....+.+. .++.|..+..-|        +.+......+. +-.+.   .|.-
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~-f~e~~---~~~g   77 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGE-FLEWA---EVHD   77 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCC-eEEEE---EECC
Confidence            37899999999999999999999987754333332 234443221101        11222222111 10000   0001


Q ss_pred             hHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCC-HHHHHhhcCCCCCCcch
Q 025041          124 NRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIP-PEKAAERGGYGGERYEH  201 (259)
Q Consensus       124 ~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~-~e~~~~R~~~R~d~~e~  201 (259)
                      +.|.. ...+...+++|.++|+|-.+.              -+..+....+.+-++||+..| +++..+|+..|+..- .
T Consensus        78 ~~YGt~~~~i~~~~~~g~~~i~d~~~~--------------g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s-~  142 (186)
T PRK14737         78 NYYGTPKAFIEDAFKEGRSAIMDIDVQ--------------GAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDS-E  142 (186)
T ss_pred             eeecCcHHHHHHHHHcCCeEEEEcCHH--------------HHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCC-H
Confidence            11222 134667788899999873221              122222222222268888874 688899998775432 2


Q ss_pred             HHHHHHHHHHHHhhh--C-CCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          202 LEFQRKVAQCYQMLR--D-SSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       202 ~~~~~rv~~~y~~l~--~-~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      .+..+++..+-.+..  . .++ +|+++ ++++..+++.++|.+
T Consensus       143 e~i~~Rl~~~~~e~~~~~~~D~-vI~N~-dle~a~~ql~~ii~~  184 (186)
T PRK14737        143 ESIEKRIENGIIELDEANEFDY-KIIND-DLEDAIADLEAIICG  184 (186)
T ss_pred             HHHHHHHHHHHHHHhhhccCCE-EEECc-CHHHHHHHHHHHHhc
Confidence            345556555433322  1 244 45555 899999999887653

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=99.16  E-value=3.2e-10  Score=94.14  Aligned_cols=180  Identities=18%  Similarity=0.190  Sum_probs=97.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCC------CChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDR------TTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~------~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      +..|||.+|+||||..+.+..+....   ...+.+|..      +.. ...+..++.++..++- +.+-...      +.
T Consensus        24 ~~~iEGNIa~GKsTfl~~~~~~t~~~---~ev~tEPV~kW~nV~~~~-~n~L~~mY~ep~Rws~-tfQtYv~------lt   92 (244)
T KOG4235|consen   24 LSIIEGNIAVGKSTFLNFFLNKTYEE---WEVLTEPVAKWQNVQGAN-ANLLDMMYREPARWSY-TFQTYVF------LT   92 (244)
T ss_pred             eEEEecccccchHHHHHHHHhccCcc---ceecCchHHHHhcccccc-ccHHHHHhhchHhhee-hhhHHHH------HH
Confidence            33499999999999999777655321   223344421      000 0122233343332211 1111111      11


Q ss_pred             HHHHHH--hcC--CeEEEcccccchh-h-----hhcCC--C----CCHHHHHhhh-ccCCCCCEEEEEeCCHHHHHhhcC
Q 025041          131 MMEAKL--KAG--TTLIVDRYSYSGV-A-----FSSAK--G----IDIEWCKAPE-IGLLAPDSVLYLDIPPEKAAERGG  193 (259)
Q Consensus       131 ~i~~~l--~~g--~~VI~DR~~~s~~-a-----y~~~~--g----l~~~~~~~~~-~~~~~PdlvI~Ld~~~e~~~~R~~  193 (259)
                      .++..+  ..|  .+-|++|+++|.. .     |....  .    +..+|..-+. .....+|.+|||.++|++|.+|+.
T Consensus        93 rL~~~~~p~~~~kpvrimERSv~SdRyiFv~nl~esg~m~e~e~~iy~eW~d~i~~~~~v~~dgiIYLrasPetc~~Ri~  172 (244)
T KOG4235|consen   93 RLKVQLEPFNGRKPVRIMERSVYSDRYIFVENLYESGSMNEVEYVIYQEWFDWILRSMDVSLDGIIYLRASPETCYKRIY  172 (244)
T ss_pred             HHHHHhcCCCCCCCeehhhhhhhhhHHHHHHHHHhcCCcccchhhhHHHHHHHHHhccccccceEEEeecChHHHHHHHH
Confidence            122222  123  5667777777543 1     22111  1    1135555444 334789999999999999999998


Q ss_pred             CCCCCcc---hHHHHHHHHHHHHhh---------hCCCeEEEcCCCCHHH-----HHHHHHHHHHHHHhhh
Q 025041          194 YGGERYE---HLEFQRKVAQCYQML---------RDSSWKIIDACQSIED-----VEKQLKEIVLDQVTAC  247 (259)
Q Consensus       194 ~R~d~~e---~~~~~~rv~~~y~~l---------~~~~~~vIDa~~s~ee-----v~~~I~~~i~~~l~~~  247 (259)
                      .|...-|   +++|++.+....+.+         .+.++.++|++...|-     -+++....+.++++.+
T Consensus       173 ~R~R~EE~gipL~YLe~LH~~HE~WLi~~~f~~lq~vpvLVLDad~n~df~~e~~~~~~~~~~v~ef~~~~  243 (244)
T KOG4235|consen  173 LRAREEEKGIPLKYLEALHELHESWLIKLHFPNLQAVPVLVLDADHNMDFSLELTEYERLMREVNEFVKNL  243 (244)
T ss_pred             HHhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhHhhcCCeEEEecccchhHHHHHHHHHHHHHHHHHHHhcC
Confidence            6533222   468888776655543         2358999998644332     3455556666666543

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.15  E-value=6.4e-10  Score=93.97  Aligned_cols=172  Identities=20%  Similarity=0.241  Sum_probs=92.6

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE-EEEecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHH
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV-ELWRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLF  121 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v-~~~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~  121 (259)
                      ++.+|.+|+|.|++||||||+++.|...+...++.+ ..++.|..+..-        .+.++.....+..+..    ..+
T Consensus         1 ~~~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~   76 (205)
T PRK00300          1 MMRRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEW----AEV   76 (205)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEE----EEE
Confidence            356899999999999999999999999875222211 123444322100        1222222221110000    000


Q ss_pred             HHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc
Q 025041          122 SANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE  200 (259)
Q Consensus       122 ~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e  200 (259)
                      ..+.+.. ...+...+.+|.+||+|--+..              ...+....+.+-.++++..+.+++.+|+..|++.- 
T Consensus        77 ~~~~y~~~~~~i~~~l~~g~~vi~dl~~~g--------------~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~-  141 (205)
T PRK00300         77 FGNYYGTPRSPVEEALAAGKDVLLEIDWQG--------------ARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDS-  141 (205)
T ss_pred             CCccccCcHHHHHHHHHcCCeEEEeCCHHH--------------HHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCC-
Confidence            0111111 1346677788999998843221              11112223333335555677889999998775321 


Q ss_pred             hHHHHHHHHHHHHhh---hCCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          201 HLEFQRKVAQCYQML---RDSSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       201 ~~~~~~rv~~~y~~l---~~~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                      .....+++.....+.   ...+.+++|  .+++++.+++.+++...
T Consensus       142 ~~~i~~rl~~~~~~~~~~~~~d~vi~n--~~~e~~~~~l~~il~~~  185 (205)
T PRK00300        142 EEVIARRLAKAREEIAHASEYDYVIVN--DDLDTALEELKAIIRAE  185 (205)
T ss_pred             HHHHHHHHHHHHHHHHhHHhCCEEEEC--CCHHHHHHHHHHHHHHH
Confidence            223444443332222   124555554  37999999999998774

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=99.15  E-value=1.1e-09  Score=94.53  Aligned_cols=166  Identities=16%  Similarity=0.207  Sum_probs=101.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      ..+.+|+|+|.|||||+.+++.|.+.++.+|+.|..+..|..    -+.     ..     +.       ..|+.     
T Consensus        29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~----eE~-----~~-----p~-------lwRfw-----   82 (230)
T TIGR03707        29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSD----RER-----TQ-----WY-------FQRYV-----   82 (230)
T ss_pred             CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCH----HHH-----cC-----hH-------HHHHH-----
Confidence            468999999999999999999999999999998887665541    011     10     10       12221     


Q ss_pred             HHHH-hcCCeEEEcccccchhhhhcCCCC-C-HHHH------Hhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCCCC--
Q 025041          133 EAKL-KAGTTLIVDRYSYSGVAFSSAKGI-D-IEWC------KAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGER--  198 (259)
Q Consensus       133 ~~~l-~~g~~VI~DR~~~s~~ay~~~~gl-~-~~~~------~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--  198 (259)
                       ..+ ..|.+.|+||++|.........|. + .+|-      ..++   ......-+-|||+++.++..+|+..|.+.  
T Consensus        83 -~~lP~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~  161 (230)
T TIGR03707        83 -QHLPAAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPL  161 (230)
T ss_pred             -HhCCCCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCc
Confidence             222 569999999999977654433332 2 2222      1222   23345568999999999999999765321  


Q ss_pred             --c--c-----hHHHHHHHHHHHHhhh------CCCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 025041          199 --Y--E-----HLEFQRKVAQCYQMLR------DSSWKIIDACQSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       199 --~--e-----~~~~~~rv~~~y~~l~------~~~~~vIDa~~s~eev~~~I~~~i~~~l~~  246 (259)
                        +  .     ..+...+...+|.++-      ..+|++|+++.. .-.--.|.+.|.+.|..
T Consensus       162 k~Wk~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk-~~a~l~v~~~i~~~l~~  223 (230)
T TIGR03707       162 KQWKLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDK-KRARLNAIRHILSRLDY  223 (230)
T ss_pred             ccccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH-HHHHHHHHHHHHHhCCC
Confidence              1  1     1222333444554431      258999998732 22223344444444443

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>PHA03136 thymidine kinase; Provisional

Probab=99.14  E-value=2.6e-09  Score=97.57  Aligned_cols=160  Identities=18%  Similarity=0.178  Sum_probs=92.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCC--ChH--HHHHHHHHhC-----CCCCCHH-H-------
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRT--TSV--GQMISAYLSN-----QSHLDDH-T-------  116 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~--~~~--g~~ir~~l~~-----~~~~~~~-~-------  116 (259)
                      +-..|.|||+.|+||||+++.|.+. ......++.+.||-.-  +.+  .+.|..++.-     .+.++.. +       
T Consensus        35 ~~~rvyieG~~gvGKTT~~~~l~~~-~~~~~~vl~v~EPm~yW~~v~~~~d~i~~Iy~~q~r~~~G~~s~~~a~~~~~~~  113 (378)
T PHA03136         35 RLVLLYLDGPFGTGKTTTAKLLMEM-PDTLAARLYLAEPMAAWRNHFGGADMIKEINEIQELKARGDIACRDAKAIAAAE  113 (378)
T ss_pred             eeEEEEEECCCcCCHHHHHHHHHhc-cccCCCeeeecCchHHHHhhcCcchHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Confidence            4568999999999999999999873 2223335666666210  111  1444444321     2333321 1       


Q ss_pred             HHHHHHHhHHHHH-HHHHHHHh------------cCCeEEEcccccchh-hhhcC---CC-CCHH-HHHhh--hccCCCC
Q 025041          117 IHLLFSANRWEKR-SMMEAKLK------------AGTTLIVDRYSYSGV-AFSSA---KG-IDIE-WCKAP--EIGLLAP  175 (259)
Q Consensus       117 ~~ll~~a~r~~~~-~~i~~~l~------------~g~~VI~DR~~~s~~-ay~~~---~g-l~~~-~~~~~--~~~~~~P  175 (259)
                      .++.|+.= +... ..+.+.+.            -..++|+||.+.+.. .|...   .| +... .+..+  ....+.|
T Consensus       114 ~Q~~fa~P-~~~~~~~~~~~~g~~~~~~~~~~~~pd~~~i~DRhpisA~lcFp~~~~~lG~lsy~~l~~ll~~~~~~p~p  192 (378)
T PHA03136        114 LQLQFAAP-LRIFHHVASNLFGSERCYSAAARGPDDILFIIDRHPLAACLCFPAAQFLSGALEFGDLIALISGIPDEPHG  192 (378)
T ss_pred             HHHHhccH-HHHHHHHHHHhhccccccCCCCCCCCCeEEEeecCcchHhhcCCHHHHhcCCCCHHHHHHHHhhCcCCCCC
Confidence            11111110 0001 12222221            126899999998543 22211   12 2222 22222  3456789


Q ss_pred             CEEEEEeCCHHHHHhhcCCCCCCcc--hHHHHHHHHHHHHhh
Q 025041          176 DSVLYLDIPPEKAAERGGYGGERYE--HLEFQRKVAQCYQML  215 (259)
Q Consensus       176 dlvI~Ld~~~e~~~~R~~~R~d~~e--~~~~~~rv~~~y~~l  215 (259)
                      |++|||+++++++.+|+..|+..+|  +.+|++++...|..+
T Consensus       193 D~IIyL~l~~e~~~~RI~kRgR~~E~I~~~YL~~L~~~Y~~~  234 (378)
T PHA03136        193 GNIVIMDLDECEHAERIIARGRPGEAIDVRFLCALHNIYICF  234 (378)
T ss_pred             CEEEEEeCCHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998876666  368999999988765

>PRK13949 shikimate kinase; Provisional

Probab=99.14  E-value=3.1e-09  Score=87.73  Aligned_cols=155  Identities=17%  Similarity=0.117  Sum_probs=76.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKL  136 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~l  136 (259)
                      -|+|.|++||||||+++.|++.++   +.++..+.-- ....+..+.+++...+   ..    .   .|......+....
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~---~~~id~D~~i-~~~~~~~~~~~~~~~g---~~----~---fr~~e~~~l~~l~   68 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELG---LSFIDLDFFI-ENRFHKTVGDIFAERG---EA----V---FRELERNMLHEVA   68 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC---CCeecccHHH-HHHHCccHHHHHHHhC---HH----H---HHHHHHHHHHHHH
Confidence            489999999999999999999994   3333221000 0000111112221110   00    0   0100011222222


Q ss_pred             hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC-CCC-cc----hHHHHHHHHH
Q 025041          137 KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG-GER-YE----HLEFQRKVAQ  210 (259)
Q Consensus       137 ~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R-~d~-~e----~~~~~~rv~~  210 (259)
                      ....+||..+.-.   .      ...+-..    .+..-+++|||++|++++.+|+..+ ..| +.    ..++.+.+.+
T Consensus        69 ~~~~~vis~Ggg~---~------~~~~~~~----~l~~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~  135 (169)
T PRK13949         69 EFEDVVISTGGGA---P------CFFDNME----LMNASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIE  135 (169)
T ss_pred             hCCCEEEEcCCcc---c------CCHHHHH----HHHhCCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHH
Confidence            3455777654211   0      0111111    1233478999999999999998632 112 11    1222222222


Q ss_pred             HHHh---hh-CCCeEEEcCC-CCHHHHHHHHHHH
Q 025041          211 CYQM---LR-DSSWKIIDAC-QSIEDVEKQLKEI  239 (259)
Q Consensus       211 ~y~~---l~-~~~~~vIDa~-~s~eev~~~I~~~  239 (259)
                      .|.+   +. ..+ ++||++ .++++++++|.+.
T Consensus       136 l~~~R~~~Y~~ad-~~id~~~~~~~e~~~~I~~~  168 (169)
T PRK13949        136 ALEKRAPFYRQAK-IIFNADKLEDESQIEQLVQR  168 (169)
T ss_pred             HHHHHHHHHHhCC-EEEECCCCCHHHHHHHHHHh
Confidence            2322   21 123 778875 6999999998864

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.14  E-value=3.6e-09  Score=86.43  Aligned_cols=152  Identities=14%  Similarity=0.161  Sum_probs=79.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhH---HHHH-HH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANR---WEKR-SM  131 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r---~~~~-~~  131 (259)
                      ++|+|.|++||||||+++.|++.+   |++++..         ++.+++..... ..+.... .-+....   ...+ ..
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~l---g~~~~~~---------~~~~~~~~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~   66 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKL---SLKLISA---------GDIFRELAAKM-GLDLIEF-LNYAEENPEIDKKIDRR   66 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc---CCceecH---------HHHHHHHHHHc-CCCHHHH-HHHHhcCcHHHHHHHHH
Confidence            479999999999999999999988   4443321         12222222111 1111100 0000000   0001 12


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC-cch-HH-H---H
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER-YEH-LE-F---Q  205 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~-~e~-~~-~---~  205 (259)
                      +......+..+|+|+....             |+     ....+|++|||++|+++..+|+..|... .+. .. .   .
T Consensus        67 i~~~~~~~~~~Vi~g~~~~-------------~~-----~~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d  128 (171)
T TIGR02173        67 IHEIALKEKNVVLESRLAG-------------WI-----VREYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIERE  128 (171)
T ss_pred             HHHHHhcCCCEEEEecccc-------------ee-----ecCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence            2233223444555653210             11     0235789999999999999999876432 221 11 1   1


Q ss_pred             HHHHHHHHhhh-----C-CCe-EEEcCC-CCHHHHHHHHHHHH
Q 025041          206 RKVAQCYQMLR-----D-SSW-KIIDAC-QSIEDVEKQLKEIV  240 (259)
Q Consensus       206 ~rv~~~y~~l~-----~-~~~-~vIDa~-~s~eev~~~I~~~i  240 (259)
                      ..-.+.|....     + ..+ ++||++ .++++ ++.|..++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~ydl~i~t~~~~~~~-~~~i~~~~  170 (171)
T TIGR02173       129 ESEKRRYLKFYGIDIDDLSIYDLVINTSNWDPNN-VDIILDAL  170 (171)
T ss_pred             HHHHHHHHHHhCCCccccccccEEEECCCCCHHH-HHHHHHHh
Confidence            11122233321     1 122 889986 79999 99998865

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=99.13  E-value=9.4e-10  Score=104.26  Aligned_cols=167  Identities=14%  Similarity=0.169  Sum_probs=107.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      ...+.+|+|+|.|||||+++++.|.+.++.+|+.|..+..|...    +.     ..     ++       ..|+.    
T Consensus        37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~e----E~-----~~-----~f-------lwRfw----   91 (493)
T TIGR03708        37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDE----ER-----ER-----PP-------MWRFW----   91 (493)
T ss_pred             cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHH----Hh-----cC-----cH-------HHHHH----
Confidence            45789999999999999999999999999999998877776510    10     10     10       12221    


Q ss_pred             HHHHH-hcCCeEEEcccccchhhhhcCCCC-C-HHHH------Hhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCCCC-
Q 025041          132 MEAKL-KAGTTLIVDRYSYSGVAFSSAKGI-D-IEWC------KAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGER-  198 (259)
Q Consensus       132 i~~~l-~~g~~VI~DR~~~s~~ay~~~~gl-~-~~~~------~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~-  198 (259)
                        ..+ ..|.++|+||++|.........|. + .+|-      ..++   ......-+-|||+++.++..+|+..|.++ 
T Consensus        92 --~~lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P  169 (493)
T TIGR03708        92 --RRLPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDP  169 (493)
T ss_pred             --HhCCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCC
Confidence              223 569999999999977655443332 2 2222      1222   22344558999999999999999765322 


Q ss_pred             ---c--c-----hHHHHHHHHHHHHhhh------CCCeEEEcCCC---CHHHHHHHHHHHHHHHHh
Q 025041          199 ---Y--E-----HLEFQRKVAQCYQMLR------DSSWKIIDACQ---SIEDVEKQLKEIVLDQVT  245 (259)
Q Consensus       199 ---~--e-----~~~~~~rv~~~y~~l~------~~~~~vIDa~~---s~eev~~~I~~~i~~~l~  245 (259)
                         +  .     ..+.......+|.++-      ..+|++|+++.   ..-.|.+.|.+.+...+.
T Consensus       170 ~k~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK~~arl~v~~~il~~L~~~l~  235 (493)
T TIGR03708       170 ETRWRVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDDRYRSLTVGRTLLAAIRARLA  235 (493)
T ss_pred             ccccCCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence               1  1     1222333344554431      15899999973   344567777777776664

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.13  E-value=4e-10  Score=93.22  Aligned_cols=166  Identities=19%  Similarity=0.250  Sum_probs=89.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE-EEEecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHHHHhH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV-ELWRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLFSANR  125 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v-~~~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~~a~r  125 (259)
                      |.+|+|.||+||||||+++.|++.+...++.+ ...+.|..+..-        .+.+.+.+..+. +-...   .+..+.
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~   76 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGE-FLEWA---EVHGNY   76 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCC-cEEEE---EECCee
Confidence            67999999999999999999999775433332 233444322110        011222222111 00000   000111


Q ss_pred             HHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHH
Q 025041          126 WEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEF  204 (259)
Q Consensus       126 ~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~  204 (259)
                      +.. ...+...+.+|.+||+|.-+..              ...+...++.|..++++..+.+++.+|+..|++. ...+.
T Consensus        77 y~~~~~~i~~~~~~g~~vi~d~~~~~--------------~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~-~~~~i  141 (180)
T TIGR03263        77 YGTPKSPVEEALAAGKDVLLEIDVQG--------------ARQVKKKFPDAVSIFILPPSLEELERRLRKRGTD-SEEVI  141 (180)
T ss_pred             eCCcHHHHHHHHHCCCeEEEECCHHH--------------HHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCC-CHHHH
Confidence            211 2456777889999999853221              1112222344556666677788999999876442 12234


Q ss_pred             HHHHHHHHHhhh---CCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          205 QRKVAQCYQMLR---DSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       205 ~~rv~~~y~~l~---~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      .+++.+.-.++.   ..++++++ + +++++.+++.+.+.
T Consensus       142 ~~rl~~~~~~~~~~~~~d~~i~n-~-~~~~~~~~l~~~~~  179 (180)
T TIGR03263       142 ERRLAKAKKEIAHADEFDYVIVN-D-DLEKAVEELKSIIL  179 (180)
T ss_pred             HHHHHHHHHHHhccccCcEEEEC-C-CHHHHHHHHHHHHh
Confidence            444433322221   13455554 3 78999999988763

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.12  E-value=1.3e-09  Score=99.17  Aligned_cols=178  Identities=18%  Similarity=0.196  Sum_probs=95.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh-hCCCeEEEEecCC----------CC---ChHHHHHHHH----Hh-------CCCC
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLE-GLGHSVELWRFPD----------RT---TSVGQMISAY----LS-------NQSH  111 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~-~~g~~v~~~~~p~----------~~---~~~g~~ir~~----l~-------~~~~  111 (259)
                      +++|+|++||||||+++.|++.|. ..|+.+..+..-+          .+   ...-+..|+.    +.       ++..
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~   80 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE   80 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            579999999999999999999997 5788775432110          00   0111122222    11       1111


Q ss_pred             CCH------HHH----HHH--------HHHhHHHHH-HHHHHHHhcCCeEEEc-ccccchhhhhcCCCCCHHHHHhhhcc
Q 025041          112 LDD------HTI----HLL--------FSANRWEKR-SMMEAKLKAGTTLIVD-RYSYSGVAFSSAKGIDIEWCKAPEIG  171 (259)
Q Consensus       112 ~~~------~~~----~ll--------~~a~r~~~~-~~i~~~l~~g~~VI~D-R~~~s~~ay~~~~gl~~~~~~~~~~~  171 (259)
                      +.+      ...    ..+        ..+++.++. +.+.+.+..+..||+| +|++.++.|.         +..+...
T Consensus        81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Rye---------l~~LAr~  151 (340)
T TIGR03575        81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYE---------VYQLARK  151 (340)
T ss_pred             ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHH---------HHHHHHH
Confidence            211      000    000        012222222 3344555666545554 5555554442         3334445


Q ss_pred             CCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHhhh--C----CCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          172 LLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLR--D----SSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       172 ~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l~--~----~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                      ...+..+||+++|++++.+|...|...+. .+..+.+...|+...  .    .+..+|+.+..+++-...+.+.+...+
T Consensus       152 ~~~~~~~V~ld~ple~~l~RN~~R~~~v~-devie~m~~r~E~P~~~~nrWd~pl~~v~~~~~~~~~~~~~~~~~~~~~  229 (340)
T TIGR03575       152 YSLGFCQLFLDCPVESCLLRNKQRPVPLP-DETIQLMGRKIEKPNPEKNAWEHNSLVIQSSACISEDSLEVTDLLNTAL  229 (340)
T ss_pred             hCCCEEEEEEeCCHHHHHHHHhcCCCCCC-HHHHHHHHHHhcCCCCCCCCCCCCeEEEecCccccccchhHHHHHHHHH
Confidence            55677999999999999999998865443 345555656665432  1    245777764333222223444444443

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK00625 shikimate kinase; Provisional

Probab=99.12  E-value=8.7e-09  Score=85.44  Aligned_cols=156  Identities=13%  Similarity=0.059  Sum_probs=79.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHh-----HHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSAN-----RWEKRS  130 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~-----r~~~~~  130 (259)
                      +.|++.|++||||||+++.|+++++   +.++.++         +.|++-.......+. .  -.|...     |.....
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~---~~~id~D---------~~I~~~~g~~~~~~i-~--eif~~~Ge~~fr~~E~~   65 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLS---LPFFDTD---------DLIVSNYHGALYSSP-K--EIYQAYGEEGFCREEFL   65 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC---CCEEEhh---------HHHHHHhCCCCCCCH-H--HHHHHHCHHHHHHHHHH
Confidence            3599999999999999999999994   4444322         222221110000000 0  001100     100011


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--c---c-hHHH
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--Y---E-HLEF  204 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~---e-~~~~  204 (259)
                      .++ .+..+..||..+.-.   .      .+.+....    +.....+|||++|++++.+|+..|+..  .   + -.+.
T Consensus        66 ~l~-~l~~~~~VIs~GGg~---~------~~~e~~~~----l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~l  131 (173)
T PRK00625         66 ALT-SLPVIPSIVALGGGT---L------MIEPSYAH----IRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEI  131 (173)
T ss_pred             HHH-HhccCCeEEECCCCc---c------CCHHHHHH----HhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHH
Confidence            122 223344566443110   0      11122221    223468999999999999999876421  1   1 1344


Q ss_pred             HHHHHHHHHhhhCC---CeEEEcCC-CCHHHHHHHHHHHH
Q 025041          205 QRKVAQCYQMLRDS---SWKIIDAC-QSIEDVEKQLKEIV  240 (259)
Q Consensus       205 ~~rv~~~y~~l~~~---~~~vIDa~-~s~eev~~~I~~~i  240 (259)
                      +++....|++.++.   --++++|+ .++-++.+.++..+
T Consensus       132 l~~R~~~Y~~~ad~~i~~~~~~~~~~~~~~~~~~~~~~~~  171 (173)
T PRK00625        132 LSQRIDRMRSIADYIFSLDHVAETSSESLMRACQSFCTLL  171 (173)
T ss_pred             HHHHHHHHHHHCCEEEeCCCcccCCCCCHHHHHHHHHHHh
Confidence            44555677776651   11234443 57777777776654

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.11  E-value=7.1e-10  Score=88.01  Aligned_cols=114  Identities=21%  Similarity=0.216  Sum_probs=67.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC--C--CCHHHHHHHHHHhHHHHH-HH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS--H--LDDHTIHLLFSANRWEKR-SM  131 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~--~--~~~~~~~ll~~a~r~~~~-~~  131 (259)
                      +|++.|++||||||+++.|++.+.   .  ..+.        .+.++.-+....  .  .........     ++.. ..
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~---~--~~i~--------~D~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~   62 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG---A--VVIS--------QDEIRRRLAGEDPPSPSDYIEAEERA-----YQILNAA   62 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST---E--EEEE--------HHHHHHHHCCSSSGCCCCCHHHHHHH-----HHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC---C--EEEe--------HHHHHHHHcccccccchhHHHHHHHH-----HHHHHHH
Confidence            689999999999999999998885   2  2222        133333333211  1  111111111     1111 34


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG  196 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~  196 (259)
                      +...+..|..+|+|......-.        ...+..+......+..+|+|++|++++.+|+..|.
T Consensus        63 ~~~~l~~g~~~vvd~~~~~~~~--------r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~  119 (143)
T PF13671_consen   63 IRKALRNGNSVVVDNTNLSREE--------RARLRELARKHGYPVRVVYLDAPEETLRERLAQRN  119 (143)
T ss_dssp             HHHHHHTT-EEEEESS--SHHH--------HHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTH
T ss_pred             HHHHHHcCCCceeccCcCCHHH--------HHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcC
Confidence            5567788988999865443211        12333444455667899999999999999998763

...

>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2

Probab=99.10  E-value=8.1e-11  Score=94.92  Aligned_cols=119  Identities=24%  Similarity=0.405  Sum_probs=80.3

Q ss_pred             HHHHHhHHHHHHHHHHHHhcCCeEEEcccccc-hhhhhcC---CC-CCH-------HHHHhhhccCCC-CCEEEEEeCCH
Q 025041          119 LLFSANRWEKRSMMEAKLKAGTTLIVDRYSYS-GVAFSSA---KG-IDI-------EWCKAPEIGLLA-PDSVLYLDIPP  185 (259)
Q Consensus       119 ll~~a~r~~~~~~i~~~l~~g~~VI~DR~~~s-~~ay~~~---~g-l~~-------~~~~~~~~~~~~-PdlvI~Ld~~~  185 (259)
                      +.|...|+.+..   . ...+.++|+||+++| ..+|...   .| ++.       ++...+....+. ||++|||++||
T Consensus         3 ~~~l~~R~~~~~---~-~~~~~~~i~eRsi~sd~~vF~~~~~~~g~l~~~e~~~Y~~~~~~l~~~~~~~pdl~IYL~~~~   78 (146)
T PF01712_consen    3 LYFLLSRFEQYK---E-LNTKQNVIMERSIYSDDFVFAKMLFKSGYLSKEEYDLYDKLFDELIEEIPKSPDLIIYLDASP   78 (146)
T ss_dssp             HHHHHHHHHHHH---H-STSSSEEEEES-HHHHHHTHHHHHHHTTSS-HHHHHHHHHHHHHHHHHCCHH-SEEEEEE--H
T ss_pred             HHHHHHHHHHHH---H-HhcCCCceecCCeeechHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccCCeEEEEeCCH
Confidence            455566765432   1 456789999999998 6666442   23 232       233344456777 99999999999


Q ss_pred             HHHHhhcCCCCCCcc---hHHHHHHHH-HHHHhhhC----CCeEEEcCCC-CHHHHHHHHHHHHH
Q 025041          186 EKAAERGGYGGERYE---HLEFQRKVA-QCYQMLRD----SSWKIIDACQ-SIEDVEKQLKEIVL  241 (259)
Q Consensus       186 e~~~~R~~~R~d~~e---~~~~~~rv~-~~y~~l~~----~~~~vIDa~~-s~eev~~~I~~~i~  241 (259)
                      +++.+|+..|+..+|   +.+|++++. +.|..+..    .++++||++. ++++..+.+..+++
T Consensus        79 e~~~~RI~kRgR~~E~~i~~~Yl~~L~~~~y~~~~~~~~~~~vl~id~~~~d~~~~~~~~~~~~~  143 (146)
T PF01712_consen   79 ETCLERIKKRGREEEKNIPLEYLERLHEEAYEDWLKKYDSTPVLVIDADNLDFVENPEDIEQVIN  143 (146)
T ss_dssp             HHHHHHHHHCTTGGGTTS-HHHHHHHHHHHHCCHHSCCTTTTGCEEEECEEECCSHHTTHHHHHC
T ss_pred             HHHHHHHHHhCCchhcCCCHHHHHHHhHHHHHHHHHhCCCCceEEEECCccCcccCHHHHHHHHH
Confidence            999999999987777   479999999 79987642    4788999864 66666666665543

7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.10  E-value=2.1e-09  Score=105.79  Aligned_cols=166  Identities=20%  Similarity=0.221  Sum_probs=94.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      ..++.+|+++|++||||||+++.|+++|...|..+..++        ++.++..+..+...++......+  .+.  ...
T Consensus       457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~--------~D~~r~~l~~~~~~~~~~r~~~~--~~l--~~~  524 (632)
T PRK05506        457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLD--------GDNVRHGLNRDLGFSDADRVENI--RRV--AEV  524 (632)
T ss_pred             CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEc--------ChhhhhccCCCCCCCHHHHHHHH--HHH--HHH
Confidence            346899999999999999999999999987777666554        24444444322222221111000  010  011


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCc-----chHHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERY-----EHLEFQR  206 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~-----e~~~~~~  206 (259)
                      ....+.+|.+||+|-...    +..    ..+++..+...  .+-.+|||++|++++.+|.. |+ -+     +...-+.
T Consensus       525 a~~~~~~G~~Vivda~~~----~~~----~R~~~r~l~~~--~~~~~v~L~~~~e~~~~R~~-r~-L~~~~~~~~l~~l~  592 (632)
T PRK05506        525 ARLMADAGLIVLVSFISP----FRE----ERELARALHGE--GEFVEVFVDTPLEVCEARDP-KG-LYAKARAGEIKNFT  592 (632)
T ss_pred             HHHHHhCCCEEEEECCCC----CHH----HHHHHHHhccc--CCeEEEEECCCHHHHHhhCC-cc-hhhhcccccccccc
Confidence            223446788999983211    110    01333322211  25589999999999999953 21 11     0000011


Q ss_pred             HHHHHHHhhhCCCeEEEcC-CCCHHHHHHHHHHHHHH
Q 025041          207 KVAQCYQMLRDSSWKIIDA-CQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       207 rv~~~y~~l~~~~~~vIDa-~~s~eev~~~I~~~i~~  242 (259)
                      .++..|.... ...++||+ ..++++++++|.+.+..
T Consensus       593 ~~r~~y~~P~-~a~~~Id~~~~s~~e~v~~Ii~~l~~  628 (632)
T PRK05506        593 GIDSPYEAPE-NPELRLDTTGRSPEELAEQVLELLRR  628 (632)
T ss_pred             ccccCCCCCC-CCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence            1222343211 23478887 67999999999998864

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.09  E-value=3.1e-09  Score=87.21  Aligned_cols=70  Identities=14%  Similarity=0.030  Sum_probs=51.0

Q ss_pred             CCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHhhhC--CCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          172 LLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRD--SSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       172 ~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l~~--~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      ...|-..|||++|++++.+|+..|...+.+.+.+..-...++.+..  ..+++||++.+++++++++...+.
T Consensus        88 ~~~~~~~v~l~a~~~~l~~Rl~~R~~~~a~~~vl~~Q~~~~ep~~~~e~~~~~id~~~~~~~~~~~~~~~~~  159 (163)
T PRK11545         88 GNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK  159 (163)
T ss_pred             cCCCEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHcCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHH
Confidence            4567789999999999999998875434344444433333443332  358999999999999999998874

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.09  E-value=2.7e-09  Score=91.00  Aligned_cols=70  Identities=14%  Similarity=0.148  Sum_probs=50.0

Q ss_pred             CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHhh--hCCCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML--RDSSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l--~~~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                      .+|.+|++++|+++..+|+..|+. ....+..+++..++...  .+...++|++++++|++.++|.+.+...+
T Consensus       133 ~~d~ii~V~a~~e~~~~Rl~~R~~-~s~e~~~~Ri~~q~~~~~~~~~ad~vI~N~g~~e~l~~~i~~~~~~~~  204 (208)
T PRK14731        133 GLDFIVVVAADTELRLERAVQRGM-GSREEIRRRIAAQWPQEKLIERADYVIYNNGTLDELKAQTEQLYQVLL  204 (208)
T ss_pred             cCCeEEEEECCHHHHHHHHHHcCC-CCHHHHHHHHHHcCChHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            469999999999999999988743 22345566665433211  11123678888999999999999887654

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.08  E-value=9.6e-09  Score=86.85  Aligned_cols=72  Identities=13%  Similarity=0.061  Sum_probs=49.6

Q ss_pred             CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHH--hhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 025041          174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQ--MLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~--~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~  246 (259)
                      ..|.++|+++|+++..+|+..|+. +...+...++..+..  +.....-++|++++++++..++|.+.+..+++.
T Consensus       121 ~~D~vi~V~a~~e~r~~RL~~R~g-~s~e~a~~ri~~Q~~~~~k~~~aD~vI~N~~~~~~l~~~v~~l~~~~~~~  194 (196)
T PRK14732        121 LCDATVTVDSDPEESILRTISRDG-MKKEDVLARIASQLPITEKLKRADYIVRNDGNREGLKEECKILYSTLLKK  194 (196)
T ss_pred             hCCEEEEEECCHHHHHHHHHHcCC-CCHHHHHHHHHHcCCHHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHHHh
Confidence            459999999999999999988732 333345555543211  001112267888889999999999988776653

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=99.07  E-value=5.7e-10  Score=90.22  Aligned_cols=165  Identities=18%  Similarity=0.182  Sum_probs=99.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCC-CeEE---EEecCCCCChHHHHHHHHHhCCCCCCH-----HHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLG-HSVE---LWRFPDRTTSVGQMISAYLSNQSHLDD-----HTIHLLFSA  123 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g-~~v~---~~~~p~~~~~~g~~ir~~l~~~~~~~~-----~~~~ll~~a  123 (259)
                      .+|.+|++.||+|+||-|++..++..+...+ +.++   +++..+-+   ++.       ...++.     ....-.|+.
T Consensus         3 ~~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~Ed-------H~avs~~eF~~~a~~g~FAl   72 (192)
T COG3709           3 FMGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GED-------HDALSEAEFNTRAGQGAFAL   72 (192)
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCC---ccc-------ccccCHHHHHHHhhcCceeE
Confidence            3799999999999999999999999997653 3222   12211111   110       001111     111112222


Q ss_pred             hHHHH-----H-HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC
Q 025041          124 NRWEK-----R-SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE  197 (259)
Q Consensus       124 ~r~~~-----~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d  197 (259)
                      .+..+     + ..|...+.+|.+||..++    .+|.       ..+.   ..++ --+++.|.++|+++.+|+..|+.
T Consensus        73 sWqAhGL~Ygip~eId~wl~~G~vvl~NgS----Ra~L-------p~ar---rry~-~Llvv~ita~p~VLaqRL~~RGR  137 (192)
T COG3709          73 SWQAHGLSYGIPAEIDLWLAAGDVVLVNGS----RAVL-------PQAR---RRYP-QLLVVCITASPEVLAQRLAERGR  137 (192)
T ss_pred             EehhcCccccCchhHHHHHhCCCEEEEecc----Hhhh-------HHHH---Hhhh-cceeEEEecCHHHHHHHHHHhcc
Confidence            22111     1 356677889999998754    2221       1111   1222 23799999999999999987653


Q ss_pred             CcchHHHHHHHHHHHHh-hhCCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          198 RYEHLEFQRKVAQCYQM-LRDSSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       198 ~~e~~~~~~rv~~~y~~-l~~~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                      .- ..+...++...-.. ..+.++++||+++++|...++..+.+...
T Consensus       138 Es-~eeI~aRL~R~a~~~~~~~dv~~idNsG~l~~ag~~ll~~l~~~  183 (192)
T COG3709         138 ES-REEILARLARAARYTAGPGDVTTIDNSGELEDAGERLLALLHQD  183 (192)
T ss_pred             CC-HHHHHHHHHhhcccccCCCCeEEEcCCCcHHHHHHHHHHHHHhh
Confidence            21 23555665443221 23468999999999999999988877643

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.07  E-value=1.2e-08  Score=86.49  Aligned_cols=72  Identities=14%  Similarity=0.123  Sum_probs=50.3

Q ss_pred             CCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHh--hhCCCeEEEcCCCCHHHHHHHHHHHHHHHHh
Q 025041          173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQM--LRDSSWKIIDACQSIEDVEKQLKEIVLDQVT  245 (259)
Q Consensus       173 ~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~--l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~  245 (259)
                      ...|.+||+++|+++..+|+..|+ .+...+...++..+...  -......+||++++++++.+++...+..++.
T Consensus       124 ~~~D~vi~V~a~~e~ri~Rl~~R~-g~s~e~~~~ri~~Q~~~~~k~~~ad~vI~N~g~~e~l~~~v~~~~~~~~~  197 (200)
T PRK14734        124 RKMDLVVVVDVDVEERVRRLVEKR-GLDEDDARRRIAAQIPDDVRLKAADIVVDNNGTREQLLAQVDGLIAEILS  197 (200)
T ss_pred             ccCCeEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhcCCHHHHHHhCCEEEECcCCHHHHHHHHHHHHHHHHh
Confidence            357999999999999999988763 23333455554432211  0112347899999999999999998877654

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.07  E-value=8.1e-09  Score=83.01  Aligned_cols=160  Identities=14%  Similarity=0.127  Sum_probs=96.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH----H
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS----M  131 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~----~  131 (259)
                      -.|++.|+.||||||+++.|.++|....+....+     ..+  +.++++ ..+..+++        .+||.++.    .
T Consensus        13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~-----Hp~--~NveKM-~~GipLnD--------~DR~pWL~~i~~~   76 (191)
T KOG3354|consen   13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDL-----HPP--ANVEKM-TQGIPLND--------DDRWPWLKKIAVE   76 (191)
T ss_pred             eeEEEEecCCCChhhHHHHHHHHhCCcccccccC-----CCH--HHHHHH-hcCCCCCc--------ccccHHHHHHHHH
Confidence            3799999999999999999999996433222111     111  334444 33333332        12333221    1


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHh-hh--ccCCCC---CEEEEEeCCHHHHHhhcCCCCCCcchHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PE--IGLLAP---DSVLYLDIPPEKAAERGGYGGERYEHLEFQ  205 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~--~~~~~P---dlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~  205 (259)
                      ....+..|..||+-   +|.+..++     .+.+.. +.  +....|   -.+|||.++.|++.+|+..|...|.+.+.+
T Consensus        77 ~~~~l~~~q~vVlA---CSaLKk~Y-----RdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~ll  148 (191)
T KOG3354|consen   77 LRKALASGQGVVLA---CSALKKKY-----RDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADLL  148 (191)
T ss_pred             HHHHhhcCCeEEEE---hHHHHHHH-----HHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHHH
Confidence            22334456666653   34443221     122221 11  112233   368999999999999999987777765554


Q ss_pred             HHHHHHHHhhhC-----CCeEEEcCC-CCHHHHHHHHHHHHHH
Q 025041          206 RKVAQCYQMLRD-----SSWKIIDAC-QSIEDVEKQLKEIVLD  242 (259)
Q Consensus       206 ~rv~~~y~~l~~-----~~~~vIDa~-~s~eev~~~I~~~i~~  242 (259)
                         .++|..+..     .+++.||.. .++|+++..|.+-+..
T Consensus       149 ---eSQf~~LE~p~~~e~div~isv~~~~~e~iv~tI~k~~~~  188 (191)
T KOG3354|consen  149 ---ESQFATLEAPDADEEDIVTISVKTYSVEEIVDTIVKMVAL  188 (191)
T ss_pred             ---HHHHHhccCCCCCccceEEEeeccCCHHHHHHHHHHHHHh
Confidence               456655531     368999975 9999999999987754

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.07  E-value=3.4e-09  Score=102.82  Aligned_cols=168  Identities=17%  Similarity=0.187  Sum_probs=91.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      ++|.+|+|.|++||||||+++.|++.|.. .|..+..++        ++.+++.+..+..+........+  .+..  ..
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD--------~D~vr~~l~ge~~f~~~er~~~~--~~l~--~~  457 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLD--------GDVVRKHLSSELGFSKEDRDLNI--LRIG--FV  457 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeC--------CcHHHHhccCCCCCCHHHHHHHH--HHHH--HH
Confidence            46789999999999999999999999986 666666554        23344444332223221111110  0100  11


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC---CCCcchHHHHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG---GERYEHLEFQRKV  208 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R---~d~~e~~~~~~rv  208 (259)
                      ....++.|.+||+|--.    .|...+   ..+...+.. .. .-++|||++|++++.+|....   ..+.+...-+...
T Consensus       458 a~~v~~~Gg~vI~~~~~----p~~~~R---~~nr~llk~-~g-~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~  528 (568)
T PRK05537        458 ASEITKNGGIAICAPIA----PYRATR---REVREMIEA-YG-GFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGI  528 (568)
T ss_pred             HHHHHhCCCEEEEEeCC----chHHHH---HHHHHHHhh-cC-CEEEEEEcCCHHHHHHhccccccccchhchhhccccc
Confidence            12345678899997321    111101   112211221 11 236899999999999997531   0111111001011


Q ss_pred             HHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 025041          209 AQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD  242 (259)
Q Consensus       209 ~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~  242 (259)
                      +..|..+. ..-++||++ .++++++++|.+.+.+
T Consensus       529 R~~yy~p~-~Adl~IDt~~~s~~eiv~~Il~~L~~  562 (568)
T PRK05537        529 SDPYEPPA-NPELVIDTTNVTPDECAHKILLYLEE  562 (568)
T ss_pred             cccccCCC-CCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            12222211 134788976 6999999999988754

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.06  E-value=9.3e-09  Score=86.86  Aligned_cols=164  Identities=12%  Similarity=0.133  Sum_probs=89.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec----C-CCCChHHHHHHHHHh-----CCC-CCCHHHHH-HHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF----P-DRTTSVGQMISAYLS-----NQS-HLDDHTIH-LLFSA  123 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~----p-~~~~~~g~~ir~~l~-----~~~-~~~~~~~~-ll~~a  123 (259)
                      ++|+|+|++||||||+++.|++.+   |+.++..+.    . ..+++.++.+.+.+.     ..+ .++..... ++|..
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d   78 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQK---GIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFND   78 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh---CCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCC
Confidence            479999999999999999999877   455543211    0 113444555555442     123 34432211 22211


Q ss_pred             -hHHHHH---------HHHHHHHh---cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHh
Q 025041          124 -NRWEKR---------SMMEAKLK---AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAE  190 (259)
Q Consensus       124 -~r~~~~---------~~i~~~l~---~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~  190 (259)
                       .....+         ..+...+.   ....||+|--    +.|..      .       .....|.+|++++|+++..+
T Consensus        79 ~~~~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~p----ll~E~------~-------~~~~~D~ii~V~a~~e~r~~  141 (195)
T PRK14730         79 PEERRWLENLIHPYVRERFEEELAQLKSNPIVVLVIP----LLFEA------K-------LTDLCSEIWVVDCSPEQQLQ  141 (195)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeH----HhcCc------c-------hHhCCCEEEEEECCHHHHHH
Confidence             000111         11111111   1345665521    11110      0       01246899999999999999


Q ss_pred             hcCCCCCCcchHHHHHHHHHHHHh--hhCCCeEEEcCCCCHHHHHHHHHHHH
Q 025041          191 RGGYGGERYEHLEFQRKVAQCYQM--LRDSSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       191 R~~~R~d~~e~~~~~~rv~~~y~~--l~~~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                      |+..|+ .+...++..++..+...  -....-++|++++++++..+++.+.+
T Consensus       142 Rl~~R~-g~s~e~~~~ri~~Q~~~~~k~~~aD~vI~N~g~~e~l~~qv~~~l  192 (195)
T PRK14730        142 RLIKRD-GLTEEEAEARINAQWPLEEKVKLADVVLDNSGDLEKLYQQVDQLL  192 (195)
T ss_pred             HHHHcC-CCCHHHHHHHHHhCCCHHHHHhhCCEEEECCCCHHHHHHHHHHHH
Confidence            998774 33334555555443211  01122358899999999999998765

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=99.04  E-value=6.8e-09  Score=91.23  Aligned_cols=163  Identities=19%  Similarity=0.265  Sum_probs=99.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      ..+.+|+|+|.|||||+.+++.|.+.++.+|+.|..+..|..    -+.     ..     +.       ..|+.     
T Consensus        54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~----eE~-----~~-----p~-------lWRfw-----  107 (264)
T TIGR03709        54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSA----EEL-----DH-----DF-------LWRIH-----  107 (264)
T ss_pred             CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCH----HHH-----cC-----ch-------HHHHH-----
Confidence            468999999999999999999999999999998887665541    011     00     10       12221     


Q ss_pred             HHHH-hcCCeEEEcccccchhhhhcCCCC-C-HHHH------Hhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCCC---
Q 025041          133 EAKL-KAGTTLIVDRYSYSGVAFSSAKGI-D-IEWC------KAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGE---  197 (259)
Q Consensus       133 ~~~l-~~g~~VI~DR~~~s~~ay~~~~gl-~-~~~~------~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~d---  197 (259)
                       ..+ ..|.+.|+||++|.........|. + .+|-      ..++   ......-+-|||+++.++..+|+..|.+   
T Consensus       108 -~~lP~~G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~  186 (264)
T TIGR03709       108 -KALPERGEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPT  186 (264)
T ss_pred             -HhCCCCCeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCc
Confidence             223 569999999999987655443332 2 2221      1222   2234455899999999999999976521   


Q ss_pred             -Cc--ch-----HHHHHHHHHHHHhhh------CCCeEEEcCCCC---HHHHHHHHHHHHHH
Q 025041          198 -RY--EH-----LEFQRKVAQCYQMLR------DSSWKIIDACQS---IEDVEKQLKEIVLD  242 (259)
Q Consensus       198 -~~--e~-----~~~~~rv~~~y~~l~------~~~~~vIDa~~s---~eev~~~I~~~i~~  242 (259)
                       ++  ..     .+.......+|+++-      ..+|++|+++..   --.|.+.|.+.|..
T Consensus       187 k~Wk~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l~~  248 (264)
T TIGR03709       187 KNWKFSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDALES  248 (264)
T ss_pred             ccccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence             11  11     122233344454431      268999998632   22344444444443

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=99.03  E-value=3.7e-09  Score=86.29  Aligned_cols=157  Identities=22%  Similarity=0.164  Sum_probs=65.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCC-CCHHHHHHHHHHhHHHH-HHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSH-LDDHTIHLLFSANRWEK-RSMMEAK  135 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~-~~~~~~~ll~~a~r~~~-~~~i~~~  135 (259)
                      |+|+|++|+||||+++.|+++    |+.++  .++.     -+.+......... +........+.....+. ..... .
T Consensus         2 I~i~G~~stGKTTL~~~L~~~----g~~~v--~E~a-----r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~   69 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR----GYPVV--PEYA-----REIIEEGGRRDRDTLPWEDDLLAFQEGILEQQLEAEA-S   69 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH----T-EEE----TT-----HHHHHHSSSS-TTSS-TT-THHHHHHH--HHHHHHHH-H
T ss_pred             EEEECCCCCCHHHHHHHHHHc----CCeEE--eecH-----HHHHHHhccccchhhhhcchHHHHHHHHHHHHHHHHH-h
Confidence            899999999999999999987    66544  3332     1222222211111 11100111111111111 11111 1


Q ss_pred             HhcCCeEEEcccccchhhhhcCC-CCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc-hHHHHHHHHHHHH
Q 025041          136 LKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE-HLEFQRKVAQCYQ  213 (259)
Q Consensus       136 l~~g~~VI~DR~~~s~~ay~~~~-gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e-~~~~~~rv~~~y~  213 (259)
                      .....+||+||.+.+.++|.... +-..+.+.... .....|++|+|..++..  ..-..|....+ ...+.+.+.+.|.
T Consensus        70 ~~~~~~vi~Dr~~~d~~aY~~~~~~~~~~~l~~~~-~~~~yd~v~~l~~~~~~--~~D~~R~~~~~~r~~~~~~~~~~l~  146 (163)
T PF13521_consen   70 AKSSDVVICDRGPLDTLAYSEFYFGDYPEELEREA-RLSRYDLVFLLPPDPPW--EQDGVRPEDPEERERIDELLKELLE  146 (163)
T ss_dssp             HH-SSEEEESS-HHHHHHHHHHHHS---HHHHHHH-HHS--SEEEEEE------------------SHHHHHHHHHHHHH
T ss_pred             hcCCCcEEEeCChHHHHHHHHHhcCcchHHHHHHH-HhCCCCEEEEeCCcccc--CCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            24578999999999999997532 21123332221 13457999999877744  22122222222 2345555555555


Q ss_pred             hhhCCCeEEEcCCCCHHH
Q 025041          214 MLRDSSWKIIDACQSIED  231 (259)
Q Consensus       214 ~l~~~~~~vIDa~~s~ee  231 (259)
                      +. ..++++|+ .+|.+|
T Consensus       147 ~~-~~~~~~v~-~gs~~e  162 (163)
T PF13521_consen  147 RH-GIPYIIVP-SGSIEE  162 (163)
T ss_dssp             GG-G---EEEE--SSHHH
T ss_pred             HC-CCeEEEeC-CCChhh
Confidence            53 24677776 556654

>smart00072 GuKc Guanylate kinase homologues

Probab=99.02  E-value=4e-09  Score=88.04  Aligned_cols=166  Identities=17%  Similarity=0.214  Sum_probs=90.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEE-EecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHHHHh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVEL-WRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLFSAN  124 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~-~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~~a~  124 (259)
                      +++|+|.||+||||+|+++.|.+.+.. -++.+.+ ++.|..+..-        .+.+......+. +-.+.   .+..+
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~-fve~~---~~~g~   77 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGL-FLEWG---EYSGN   77 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCC-eEEEE---EEcCc
Confidence            678999999999999999999998642 1222222 2333211111        123333333221 10000   00001


Q ss_pred             HHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEe-CCHHHHHhhcCCCCCCcchH
Q 025041          125 RWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLD-IPPEKAAERGGYGGERYEHL  202 (259)
Q Consensus       125 r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld-~~~e~~~~R~~~R~d~~e~~  202 (259)
                      .+.. ...+...+++|+++|+|-.+..              +.++....+.| ++|||. .+.+++.+|+..|++.- ..
T Consensus        78 ~YGt~~~~i~~~~~~~~~~ild~~~~~--------------~~~l~~~~~~~-~vIfi~~~s~~~l~~rl~~R~~~~-~~  141 (184)
T smart00072       78 YYGTSKETIRQVAEQGKHCLLDIDPQG--------------VKQLRKAQLYP-IVIFIAPPSSEELERRLRGRGTET-AE  141 (184)
T ss_pred             CcccCHHHHHHHHHcCCeEEEEECHHH--------------HHHHHHhCCCc-EEEEEeCcCHHHHHHHHHhcCCCC-HH
Confidence            1111 1345667778999999865321              12222223344 788887 66677899998775432 23


Q ss_pred             HHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          203 EFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       203 ~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      +..+++..+-.....   .+. +|+++ +.++..+++.+.|.+
T Consensus       142 ~i~~rl~~a~~~~~~~~~fd~-~I~n~-~l~~~~~~l~~~i~~  182 (184)
T smart00072      142 RIQKRLAAAQKEAQEYHLFDY-VIVND-DLEDAYEELKEILEA  182 (184)
T ss_pred             HHHHHHHHHHHHHhhhccCCE-EEECc-CHHHHHHHHHHHHHh
Confidence            444555543332222   234 44444 799999999988864

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.01  E-value=1.9e-08  Score=90.88  Aligned_cols=162  Identities=19%  Similarity=0.252  Sum_probs=84.4

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH-
Q 025041           50 NIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK-  128 (259)
Q Consensus        50 ~~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~-  128 (259)
                      ..++++..|+|.|++||||||+++.|++.|   |++++...         ..+.+..    .++.....-.+-...+.. 
T Consensus       128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~L---g~~~id~D---------~~i~~~~----G~~i~ei~~~~G~~~fr~~  191 (309)
T PRK08154        128 RRAARRRRIALIGLRGAGKSTLGRMLAARL---GVPFVELN---------REIEREA----GLSVSEIFALYGQEGYRRL  191 (309)
T ss_pred             hhccCCCEEEEECCCCCCHHHHHHHHHHHc---CCCEEeHH---------HHHHHHh----CCCHHHHHHHHCHHHHHHH
Confidence            345688999999999999999999999998   45544211         1111110    111100000000000101 


Q ss_pred             -HHHHHHHHh-cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC-C--c---c
Q 025041          129 -RSMMEAKLK-AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE-R--Y---E  200 (259)
Q Consensus       129 -~~~i~~~l~-~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d-~--~---e  200 (259)
                       ...+...+. .+..||..+.   +.+.      +...+..    +....++|||++|+++..+|+..|.. +  .   +
T Consensus       192 e~~~l~~ll~~~~~~VI~~Gg---g~v~------~~~~~~~----l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~  258 (309)
T PRK08154        192 ERRALERLIAEHEEMVLATGG---GIVS------EPATFDL----LLSHCYTVWLKASPEEHMARVRAQGDLRPMADNRE  258 (309)
T ss_pred             HHHHHHHHHhhCCCEEEECCC---chhC------CHHHHHH----HHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCC
Confidence             122333333 3445554321   1100      1111111    11245899999999999999975421 1  0   1


Q ss_pred             hHHHH----HHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHHHH
Q 025041          201 HLEFQ----RKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       201 ~~~~~----~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~~l  244 (259)
                      ..+..    ++....|..   .+ ++||++ .++++++++|.+.+...+
T Consensus       259 ~~e~i~~~~~~R~~~y~~---ad-~~I~t~~~s~ee~~~~I~~~l~~~~  303 (309)
T PRK08154        259 AMEDLRRILASREPLYAR---AD-AVVDTSGLTVAQSLARLRELVRPAL  303 (309)
T ss_pred             hHHHHHHHHHHHHHHHHh---CC-EEEECCCCCHHHHHHHHHHHHHHHh
Confidence            11222    222233432   22 578876 599999999999887654

>PLN02422 dephospho-CoA kinase

Probab=99.00  E-value=1.9e-08  Score=86.99  Aligned_cols=70  Identities=17%  Similarity=0.204  Sum_probs=50.6

Q ss_pred             CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHh--hhCCCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQM--LRDSSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~--l~~~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                      .-|.+|++++|+++..+|+..|+ .+...+...++..+...  -....-++|++++++++..+++.+++...+
T Consensus       125 ~~D~vI~V~a~~e~ri~RL~~R~-g~s~eea~~Ri~~Q~~~eek~~~AD~VI~N~gs~e~L~~qv~~ll~~l~  196 (232)
T PLN02422        125 WTKPVVVVWVDPETQLERLMARD-GLSEEQARNRINAQMPLDWKRSKADIVIDNSGSLEDLKQQFQKVLEKIR  196 (232)
T ss_pred             hCCEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHHcCChhHHHhhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence            46999999999999999998874 33334566666544311  111233688888999999999999887764

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=98.99  E-value=8.4e-08  Score=78.16  Aligned_cols=163  Identities=20%  Similarity=0.312  Sum_probs=85.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC---------CCCHHHHHHH--HHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS---------HLDDHTIHLL--FSA  123 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~---------~~~~~~~~ll--~~a  123 (259)
                      .+.+++.|.||+||||+++.+.+.+  .++.  ..++       |+.+-+.-...+         .+.......+  -++
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l--~~~~--ivNy-------G~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa   72 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKEL--VKHK--IVNY-------GDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAA   72 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHH--hhce--eeeH-------hHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHH
Confidence            4889999999999999999999988  1222  2232       222211111100         1111111111  111


Q ss_pred             hHHHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCC---CCCCcc
Q 025041          124 NRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGY---GGERYE  200 (259)
Q Consensus       124 ~r~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~---R~d~~e  200 (259)
                      .|      +.   +.+.-+|+|.+---.....+..|++ .|+.    ....||.++.|.+||+++..|-..   |...++
T Consensus        73 ~r------I~---~~~~~iivDtH~~IkTP~GylpgLP-~~Vl----~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~e  138 (189)
T COG2019          73 KR------IA---EMALEIIVDTHATIKTPAGYLPGLP-SWVL----EELNPDVIVLLEADPEEILERRLRDSRRDRDVE  138 (189)
T ss_pred             HH------HH---HhhhceEEeccceecCCCccCCCCc-HHHH----HhcCCCEEEEEeCCHHHHHHHHhcccccccccc
Confidence            11      11   1222277886532111112224555 3432    245799999999999999877543   212233


Q ss_pred             h---HHHHHHHHH--HH--HhhhCCCeEEEcC-CCCHHHHHHHHHHHHHH
Q 025041          201 H---LEFQRKVAQ--CY--QMLRDSSWKIIDA-CQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       201 ~---~~~~~rv~~--~y--~~l~~~~~~vIDa-~~s~eev~~~I~~~i~~  242 (259)
                      .   ..-++.+..  +|  .-+....+.+|.. ++.+|+.+.+|...|..
T Consensus       139 s~e~i~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~  188 (189)
T COG2019         139 SVEEIREHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLDR  188 (189)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            2   222222222  22  2222356666654 68999999999988753

>PLN02199 shikimate kinase

Probab=98.99  E-value=8.8e-08  Score=85.30  Aligned_cols=161  Identities=16%  Similarity=0.147  Sum_probs=85.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH--HH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK--RS  130 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~--~~  130 (259)
                      .++.-|++.|++||||||+++.|++.+   |+.++..+         ..|.+.+. +..+.....  .+-...+..  ..
T Consensus       100 l~~~~I~LIG~~GSGKSTVgr~LA~~L---g~~fIDtD---------~lIe~~~~-G~sI~eIf~--~~GE~~FR~~E~e  164 (303)
T PLN02199        100 LNGRSMYLVGMMGSGKTTVGKLMSKVL---GYTFFDCD---------TLIEQAMN-GTSVAEIFV--HHGENFFRGKETD  164 (303)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEehH---------HHHHHHhc-CCCHHHHHH--HhCHHHHHHHHHH
Confidence            457889999999999999999999998   45555322         22222211 111100000  000000101  12


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCC--CCCC--c--ch---
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGY--GGER--Y--EH---  201 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~--R~d~--~--e~---  201 (259)
                      .++........||.=+   .+.+      +..+-...+.     --.+|||++|++++.+|+..  ...|  .  +.   
T Consensus       165 ~L~~L~~~~~~VIStG---GG~V------~~~~n~~~L~-----~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~  230 (303)
T PLN02199        165 ALKKLSSRYQVVVSTG---GGAV------IRPINWKYMH-----KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDA  230 (303)
T ss_pred             HHHHHHhcCCEEEECC---Cccc------CCHHHHHHHh-----CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcch
Confidence            2333333344555311   1111      1111111111     24799999999999999874  1111  0  11   


Q ss_pred             --------HHHHHHHHHHHHhhhCCCeEEEc------------C-CCCHHHHHHHHHHHHHHHHhh
Q 025041          202 --------LEFQRKVAQCYQMLRDSSWKIID------------A-CQSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       202 --------~~~~~rv~~~y~~l~~~~~~vID------------a-~~s~eev~~~I~~~i~~~l~~  246 (259)
                              .+.++.....|.+ ++   ++||            + +.++++++.+|.+.+..++..
T Consensus       231 ~~~~~~~L~~L~~~R~plY~~-Ad---~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~  292 (303)
T PLN02199        231 YSVAFKRLSAIWDERGEAYTN-AN---ARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEK  292 (303)
T ss_pred             hhhHHHHHHHHHHHHHHHHHh-CC---EEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence                    1222233345554 33   4555            3 589999999999999999864

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=98.98  E-value=7.4e-08  Score=81.90  Aligned_cols=66  Identities=12%  Similarity=0.070  Sum_probs=48.6

Q ss_pred             CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH-----HhhhCCCeEEEcCCC-CHHHHHHHHHHHHHHH
Q 025041          174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY-----QMLRDSSWKIIDACQ-SIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y-----~~l~~~~~~vIDa~~-s~eev~~~I~~~i~~~  243 (259)
                      ..|.++++.+|+++..+|+..|+ .+...+...++..+.     ...++   .+||+++ +.++..+++.++++.+
T Consensus       128 ~~D~vi~V~a~~e~ri~Rl~~Rd-~~s~~~a~~ri~~Q~~~eek~~~aD---~VI~N~g~~~~~l~~~~~~~~~~~  199 (204)
T PRK14733        128 YLKKVIVIKADLETRIRRLMERD-GKNRQQAVAFINLQISDKEREKIAD---FVIDNTELTDQELESKLITTINEI  199 (204)
T ss_pred             hCCEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhCCCHHHHHHhCC---EEEECcCCCHHHHHHHHHHHHHHH
Confidence            46899999999999999998763 233345555554432     22233   7888888 9999999999988776

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=98.97  E-value=4.6e-08  Score=85.36  Aligned_cols=67  Identities=12%  Similarity=0.135  Sum_probs=46.6

Q ss_pred             CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHhh---hCCCeEEEcCC--CCHHHHHHHHHHHHHH
Q 025041          174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML---RDSSWKIIDAC--QSIEDVEKQLKEIVLD  242 (259)
Q Consensus       174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l---~~~~~~vIDa~--~s~eev~~~I~~~i~~  242 (259)
                      ..|.++++++|+++..+|+..|+ .+...+..+++..+....   ...+ .+|+++  +++++..++|.+.+..
T Consensus       136 ~~D~iv~V~a~~e~ri~RL~~R~-g~s~eea~~Ri~~Q~~~~ek~~~aD-~VI~N~~~g~~~~L~~~v~~~~~~  207 (244)
T PTZ00451        136 FVSASVVVSCSEERQIERLRKRN-GFSKEEALQRIGSQMPLEEKRRLAD-YIIENDSADDLDELRGSVCDCVAW  207 (244)
T ss_pred             cCCeEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhCCCHHHHHHhCC-EEEECCCCCCHHHHHHHHHHHHHH
Confidence            35999999999999999998774 333345555554432111   1123 567777  9999999999998755

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.97  E-value=4.4e-08  Score=93.64  Aligned_cols=29  Identities=17%  Similarity=0.322  Sum_probs=26.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..++++|+|.|++||||||+++.|+++|+
T Consensus       281 ~~~~~ii~i~G~sgsGKst~a~~la~~l~  309 (512)
T PRK13477        281 MKRQPIIAIDGPAGAGKSTVTRAVAKKLG  309 (512)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            34889999999999999999999999994

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.96  E-value=1.4e-07  Score=79.90  Aligned_cols=70  Identities=23%  Similarity=0.362  Sum_probs=44.0

Q ss_pred             CCCCCEEEEEeCCHHHHHhhcCC----CC--CCcchHHHHHHHHHH-HHhh-------h-CCCeEEEcC-CCCHHHHHHH
Q 025041          172 LLAPDSVLYLDIPPEKAAERGGY----GG--ERYEHLEFQRKVAQC-YQML-------R-DSSWKIIDA-CQSIEDVEKQ  235 (259)
Q Consensus       172 ~~~PdlvI~Ld~~~e~~~~R~~~----R~--d~~e~~~~~~rv~~~-y~~l-------~-~~~~~vIDa-~~s~eev~~~  235 (259)
                      +|.-++.|||+++||+..+|--.    .+  ..||  +.++.+.+. +..-       . ..+-++||+ +.++|||+++
T Consensus       135 ~PdA~lKiFLtAS~e~RA~RR~~q~~~~g~~~~~e--~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~  212 (222)
T COG0283         135 FPDAELKIFLTASPEERAERRYKQLQAKGFSEVFE--ELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEK  212 (222)
T ss_pred             CCCCCeEEEEeCCHHHHHHHHHHHHHhccCcchHH--HHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHH
Confidence            46667999999999998776421    11  1122  222222221 1111       1 146789997 5899999999


Q ss_pred             HHHHHHHH
Q 025041          236 LKEIVLDQ  243 (259)
Q Consensus       236 I~~~i~~~  243 (259)
                      |.+.+.+.
T Consensus       213 il~~~~~~  220 (222)
T COG0283         213 ILELIRQK  220 (222)
T ss_pred             HHHHHHHh
Confidence            99988743

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.96  E-value=2e-08  Score=80.70  Aligned_cols=146  Identities=16%  Similarity=0.116  Sum_probs=72.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKL  136 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~l  136 (259)
                      +|+|.|++||||||+++.|++.++.   .++  +.-   ..........+..+......... .+.....   ......+
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~---~~i--~~D---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~l   68 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGA---PFI--DGD---DLHPPANIAKMAAGIPLNDEDRW-PWLQALT---DALLAKL   68 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCC---EEE--eCc---ccccHHHHHHHHcCCCCCccchh-hHHHHHH---HHHHHHH
Confidence            5889999999999999999998743   222  210   00011111111211111110000 1111110   1111222


Q ss_pred             -hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHhh
Q 025041          137 -KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML  215 (259)
Q Consensus       137 -~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l  215 (259)
                       ..|..||+|-...+. .+       .+.+..+.  ...+..+|||++|++++.+|+..|....-+.+.+......|+..
T Consensus        69 ~~~~~~vVid~~~~~~-~~-------r~~~~~~~--~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~p  138 (150)
T cd02021          69 ASAGEGVVVACSALKR-IY-------RDILRGGA--ANPRVRFVHLDGPREVLAERLAARKGHFMPADLLDSQFETLEPP  138 (150)
T ss_pred             HhCCCCEEEEeccccH-HH-------HHHHHhcC--CCCCEEEEEEECCHHHHHHHHHhcccCCCCHHHHHHHHHHhcCC
Confidence             467677777443221 11       12222222  24566899999999999999988743322234444444444433


Q ss_pred             h--CCCeEEEc
Q 025041          216 R--DSSWKIID  224 (259)
Q Consensus       216 ~--~~~~~vID  224 (259)
                      .  +..+++||
T Consensus       139 ~~~~~~~~~~~  149 (150)
T cd02021         139 GEDEEDVIVID  149 (150)
T ss_pred             CCCCCCeEEcc
Confidence            2  13566666

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.95  E-value=2.4e-08  Score=80.72  Aligned_cols=116  Identities=18%  Similarity=0.105  Sum_probs=66.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKL  136 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~l  136 (259)
                      +|+|.|++||||||+++.|++.+...|..+..++        ++.+++.+.....+.+....-.+  .+.  ....+..+
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~--------~d~~r~~l~~~~~~~~~~~~~~~--~~~--~~~a~~l~   68 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD--------GDNVRHGLNKDLGFSREDREENI--RRI--AEVAKLLA   68 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc--------CHHHHHhhhhccCCCcchHHHHH--HHH--HHHHHHHH
Confidence            4789999999999999999999987776665543        23344433322112211000000  010  11223344


Q ss_pred             hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCC
Q 025041          137 KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGY  194 (259)
Q Consensus       137 ~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~  194 (259)
                      ++|.+||+|..... ..+       ..++..+..  ..+...|||++|++++.+|..+
T Consensus        69 ~~G~~VIid~~~~~-~~~-------R~~~~~l~~--~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          69 DAGLIVIAAFISPY-RED-------REAARKIIG--GGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             hCCCEEEEccCCCC-HHH-------HHHHHHhcC--CCCEEEEEEeCCHHHHHHhCch
Confidence            67899999843221 111       122222222  4677899999999999999643

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=98.95  E-value=4.7e-10  Score=96.80  Aligned_cols=165  Identities=22%  Similarity=0.325  Sum_probs=89.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME  133 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~  133 (259)
                      .+.+|+|+|+|||||+.+++.|.+.++.+|+.|..+..|.     .+-    ...+  +          ..|+..   -.
T Consensus        30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt-----~eE----~~~p--~----------lwRfw~---~l   85 (228)
T PF03976_consen   30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPT-----DEE----LRRP--F----------LWRFWR---AL   85 (228)
T ss_dssp             HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS-------HHH----HTS---T----------THHHHT---TS
T ss_pred             CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCC-----hhH----cCCC--c----------HHHHHH---hC
Confidence            4689999999999999999999999999999888766553     111    1111  0          022211   01


Q ss_pred             HHHhcCCeEEEcccccchhhhhcCCC-CCH-HH------HHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC----CC
Q 025041          134 AKLKAGTTLIVDRYSYSGVAFSSAKG-IDI-EW------CKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG----ER  198 (259)
Q Consensus       134 ~~l~~g~~VI~DR~~~s~~ay~~~~g-l~~-~~------~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~----d~  198 (259)
                      |  ..|.++|+||++|+........| ++. +|      +..++   ......-+-|||+++.++..+|+..+.    .+
T Consensus        86 P--~~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~  163 (228)
T PF03976_consen   86 P--ARGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKR  163 (228)
T ss_dssp             ----TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCG
T ss_pred             C--CCCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCcccc
Confidence            3  56999999999998765443333 232 12      12222   223445589999999999999987541    11


Q ss_pred             c--ch-----HHHHHHHHHHHHhh-h-----CCCeEEEcCCCC---HHHHHHHHHHHHHHHH
Q 025041          199 Y--EH-----LEFQRKVAQCYQML-R-----DSSWKIIDACQS---IEDVEKQLKEIVLDQV  244 (259)
Q Consensus       199 ~--e~-----~~~~~rv~~~y~~l-~-----~~~~~vIDa~~s---~eev~~~I~~~i~~~l  244 (259)
                      +  .+     .+...+...+|.++ .     ..+|++|+++..   --.|.+.|.+.|...+
T Consensus       164 wkv~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~l~~~le~~~  225 (228)
T PF03976_consen  164 WKVSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADDKRYARLAVARTLLDALEKAL  225 (228)
T ss_dssp             GG--HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SSHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCCHHHHHHHHHHHHHHHhHhhc
Confidence            1  11     11122233344432 1     269999998732   2334455555554443

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=98.93  E-value=7.4e-09  Score=87.79  Aligned_cols=72  Identities=21%  Similarity=0.204  Sum_probs=49.0

Q ss_pred             CCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH---HHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhh
Q 025041          175 PDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC---YQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACK  248 (259)
Q Consensus       175 PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~---y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~  248 (259)
                      .|.+|++++|+++..+|+..|+ .....+...++..+   .+.+. ..-.+||++.+++...++|.+.+...+....
T Consensus       124 ~d~Vi~V~a~~e~r~eRl~~R~-~~~~e~~~~~~~~Q~~~~ek~~-~ad~vi~n~~~i~~l~~~i~~~~~~~~~~~~  198 (201)
T COG0237         124 FDKVIVVYAPPEIRLERLMKRD-GLDEEDAEARLASQRDLEEKLA-LADVVIDNDGSIENLLEQIEKLLKELLGLVL  198 (201)
T ss_pred             CCEEEEEECCHHHHHHHHHhcC-CCCHHHHHHHHHhcCCHHHHHh-hcCChhhcCCCHHHHHHHHHHHHHHHHhhhh
Confidence            7899999999999999999886 22211222222211   11111 1236899999999999999998887766443

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.93  E-value=1.4e-08  Score=84.09  Aligned_cols=154  Identities=19%  Similarity=0.186  Sum_probs=82.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHh-----CCCCC---------CHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLS-----NQSHL---------DDHTIHLL  120 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~-----~~~~~---------~~~~~~ll  120 (259)
                      |.+|++-|++.|||||+++.|.+.+..   +..++.        .+.+.+.+.     ....+         .+.. ..+
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~---p~~~l~--------~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~   68 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPE---PWLHLS--------VDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLF-RRL   68 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS----EEEEE--------HHHHHHHS-GGGGTSTTSEEEETTSEEE-HHH-HHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcC---CeEEEe--------cChHHhhcCcccccCCccccccccCCchhHHH-HHH
Confidence            579999999999999999999998863   222222        122222111     11111         1211 112


Q ss_pred             HHHhHHHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHH-Hhhhc-cCCCCCEEEEEeCCHHHHHhhcCCCCCC
Q 025041          121 FSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWC-KAPEI-GLLAPDSVLYLDIPPEKAAERGGYGGER  198 (259)
Q Consensus       121 ~~a~r~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~-~~~~~-~~~~PdlvI~Ld~~~e~~~~R~~~R~d~  198 (259)
                      +.+.    ...+....+.|..||+|-.+...           .|+ +.+.. ....|-+.|-+.+|++++.+|-..|+||
T Consensus        69 ~~~~----~~~iaa~a~aG~~VIvD~v~~~~-----------~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR  133 (174)
T PF07931_consen   69 YAAM----HAAIAAMARAGNNVIVDDVFLGP-----------RWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDR  133 (174)
T ss_dssp             HHHH----HHHHHHHHHTT-EEEEEE--TTT-----------HHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSS
T ss_pred             HHHH----HHHHHHHHhCCCCEEEecCccCc-----------HHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCc
Confidence            2211    13455566789999999554322           222 11211 1356889999999999999998888887


Q ss_pred             cchHHHHHHHHHHHHhhhC--CCeEEEcCC-CCHHHHHHHHHHHH
Q 025041          199 YEHLEFQRKVAQCYQMLRD--SSWKIIDAC-QSIEDVEKQLKEIV  240 (259)
Q Consensus       199 ~e~~~~~~rv~~~y~~l~~--~~~~vIDa~-~s~eev~~~I~~~i  240 (259)
                      ....     -..+|...-.  .--+.|||+ .+++|.+++|.+.+
T Consensus       134 ~~G~-----a~~q~~~Vh~~~~YDleVDTs~~sp~ecA~~I~~~~  173 (174)
T PF07931_consen  134 PIGL-----AAWQAEHVHEGGRYDLEVDTSATSPEECAREILARL  173 (174)
T ss_dssp             STTH-----HHHHTTGGGTT---SEEEETTSS-HHHHHHHHHTT-
T ss_pred             chHH-----HHHHHhhcccCCCCCEEEECCCCCHHHHHHHHHHHh
Confidence            5431     1122322211  112679987 69999999998765

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=98.91  E-value=8.8e-09  Score=82.52  Aligned_cols=164  Identities=16%  Similarity=0.195  Sum_probs=90.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH--
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS--  130 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~--  130 (259)
                      .+|.+|+|+|.+||||||+|..|.+.|..+|.....++        |+.+|.-+...  ++      +-+.+|.+.++  
T Consensus        29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LD--------GDNvRhGLN~D--L~------F~a~dR~ENIRRi   92 (207)
T KOG0635|consen   29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILD--------GDNVRHGLNKD--LG------FKAEDRNENIRRI   92 (207)
T ss_pred             CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEec--------Ccccccccccc--cC------cchhhhhhhHHHH
Confidence            58999999999999999999999999998887665543        33344443321  21      11234555432  


Q ss_pred             -HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcchHHHHH
Q 025041          131 -MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYEHLEFQR  206 (259)
Q Consensus       131 -~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e~~~~~~  206 (259)
                       .+....+ .-.||+=-++.|.  |.    .|.+..+.+...  .+.+-||.|+|.+++.+|-+++.   .|-....-+.
T Consensus        93 geVaKLFA-Dag~iciaSlISP--YR----~dRdacRel~~~--~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgFT  163 (207)
T KOG0635|consen   93 GEVAKLFA-DAGVICIASLISP--YR----KDRDACRELLPE--GDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGFT  163 (207)
T ss_pred             HHHHHHHh-ccceeeeehhcCc--hh----ccHHHHHHhccC--CCeEEEEecCcHHHhhccCchhHHHHHhcccccccc
Confidence             2333332 2234543344443  32    233444443322  25578999999999999976531   0000000011


Q ss_pred             HHHHHHHhhhCCCeEEEc--CCCCHHHHHHHHHHHHHH
Q 025041          207 KVAQCYQMLRDSSWKIID--ACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       207 rv~~~y~~l~~~~~~vID--a~~s~eev~~~I~~~i~~  242 (259)
                      -+..-|+...+. -+++-  .+-++++.++.|.+.+.+
T Consensus       164 GIddPYEaP~~c-Ei~l~~~~~~sp~~mae~iv~YL~~  200 (207)
T KOG0635|consen  164 GIDDPYEAPLNC-EIVLKSHESSSPEEMAEIIVSYLDN  200 (207)
T ss_pred             cCCCcccCCCCc-EEEEccCCCCCHHHHHHHHHHHHhh
Confidence            122233322222 23443  345777788888776653

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.89  E-value=6.6e-08  Score=82.14  Aligned_cols=30  Identities=20%  Similarity=0.284  Sum_probs=27.2

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ++.++.+|+|.|++||||||+++.|.+.+.
T Consensus         2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~l~   31 (209)
T PRK05480          2 MMKKPIIIGIAGGSGSGKTTVASTIYEELG   31 (209)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346889999999999999999999999984

>TIGR00152 dephospho-CoA kinase

Probab=98.88  E-value=2.2e-08  Score=83.81  Aligned_cols=62  Identities=26%  Similarity=0.334  Sum_probs=42.2

Q ss_pred             CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH---HhhhCCCeEEEcCCCCHHHHHHHHH
Q 025041          174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY---QMLRDSSWKIIDACQSIEDVEKQLK  237 (259)
Q Consensus       174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y---~~l~~~~~~vIDa~~s~eev~~~I~  237 (259)
                      ..|.++++++|+++..+|+..|+. +...+..+++..+.   .... ..-.+|+++.++|+..+++.
T Consensus       123 ~~D~vv~V~~~~~~~~~Rl~~R~~-~s~~~~~~r~~~q~~~~~~~~-~ad~vI~N~~~~e~l~~~~~  187 (188)
T TIGR00152       123 LCDRVIVVDVSPQLQLERLMQRDN-LTEEEVQKRLASQMDIEERLA-RADDVIDNSATLADLVKQLE  187 (188)
T ss_pred             hCCEEEEEECCHHHHHHHHHHcCC-CCHHHHHHHHHhcCCHHHHHH-hCCEEEECCCCHHHHHHHHh
Confidence            468999999999999999987742 22234444544321   1111 13367888899999998875

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.87  E-value=5.1e-08  Score=94.39  Aligned_cols=162  Identities=15%  Similarity=0.191  Sum_probs=86.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME  133 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~  133 (259)
                      +-..|++.|++||||||+.+.|++.|+   ++++.++.-- ....|..|.+++...+      +.-+    |....+.++
T Consensus         5 ~~~~i~LiG~~GaGKttvg~~LA~~L~---~~fiD~D~~i-e~~~g~si~eif~~~G------e~~F----R~~E~~~l~   70 (542)
T PRK14021          5 RRPQAVIIGMMGAGKTRVGKEVAQMMR---LPFADADVEI-EREIGMSIPSYFEEYG------EPAF----REVEADVVA   70 (542)
T ss_pred             CCccEEEECCCCCCHHHHHHHHHHHhC---CCEEEchHHH-HHHHCcCHHHHHHHHH------HHHH----HHHHHHHHH
Confidence            456799999999999999999999994   4555332100 0011222333332211      0000    111112233


Q ss_pred             HHHhcCCeEEE-cccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--c-----ch-HHH
Q 025041          134 AKLKAGTTLIV-DRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--Y-----EH-LEF  204 (259)
Q Consensus       134 ~~l~~g~~VI~-DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~-----e~-~~~  204 (259)
                      ..+.....||. .+...    ..   ..+.+.+..+.+   .--.+|||++|++++.+|+..+..|  +     +. .+.
T Consensus        71 ~~~~~~~~VIs~GGG~v----~~---~~n~~~L~~~~~---~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l  140 (542)
T PRK14021         71 DMLEDFDGIFSLGGGAP----MT---PSTQHALASYIA---HGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKL  140 (542)
T ss_pred             HHHhcCCeEEECCCchh----CC---HHHHHHHHHHHh---cCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHH
Confidence            33333344552 22111    00   000122221111   1238999999999999998643222  1     11 233


Q ss_pred             HHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 025041          205 QRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD  242 (259)
Q Consensus       205 ~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~  242 (259)
                      +++....|.+.++   ++||++ .++++++++|.+.+..
T Consensus       141 ~~~R~~~Y~~~Ad---~~i~~~~~~~~~~~~~i~~~~~~  176 (542)
T PRK14021        141 FKQRDPVFRQVAN---VHVHTRGLTPQAAAKKLIDMVAE  176 (542)
T ss_pred             HHHHHHHHHhhCC---EEEECCCCCHHHHHHHHHHHHHh
Confidence            3444556766554   677764 7999999999998864

>PRK12338 hypothetical protein; Provisional

Probab=98.87  E-value=1.6e-07  Score=84.71  Aligned_cols=168  Identities=10%  Similarity=0.059  Sum_probs=87.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhC-----------------------C
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSN-----------------------Q  109 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~-----------------------~  109 (259)
                      .++.+|+|.|++||||||+|..|+++++.   ..+. .        ++.+++.+..                       +
T Consensus         2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~---~~~~-~--------tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~   69 (319)
T PRK12338          2 RKPYVILIGSASGIGKSTIASELARTLNI---KHLI-E--------TDFIREVVRGIIGKEYAPALHKSSYNAYTALRDK   69 (319)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHCCC---eEEc-c--------ChHHHHHHcCCCCcccCchhhcccHHHHhhcCCc
Confidence            46789999999999999999999999853   2221 1        1222222211                       1


Q ss_pred             CCCCHHHHH-HHHHHhHHHH----H-HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeC
Q 025041          110 SHLDDHTIH-LLFSANRWEK----R-SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDI  183 (259)
Q Consensus       110 ~~~~~~~~~-ll~~a~r~~~----~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~  183 (259)
                      ..+.+.... +.......+.    + ..+......|..||+|+...           .+.++.........+-..++|..
T Consensus        70 ~~~~~~~~~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl-----------~P~~i~~~~~~~~~~v~~~vl~~  138 (319)
T PRK12338         70 ENFKNNEELICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHL-----------VPGLIDIEQFEENASIHFFILSA  138 (319)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccc-----------cHHHHhhhhhcccCceEEEEEEC
Confidence            011100000 0001111111    1 23344456788899997633           22333321111112334556668


Q ss_pred             CHHHHHhhcCCC------CCCcc-hHHHHHHHHHHHHhhhC-CCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          184 PPEKAAERGGYG------GERYE-HLEFQRKVAQCYQMLRD-SSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       184 ~~e~~~~R~~~R------~d~~e-~~~~~~rv~~~y~~l~~-~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                      +.+...+|...|      +.+|- ..+-.+.++++..+.+. ..+.+|+ +.+.++.+++|.+.|.+..
T Consensus       139 dee~h~~Rf~~R~~~~~r~~~~l~~f~~Ir~Iq~~l~~~A~e~~VpvI~-N~did~Tv~~ile~I~e~s  206 (319)
T PRK12338        139 DEEVHKERFVKRAMEIKRGGKQLEYFRENRIIHDHLVEQAREHNVPVIK-NDDIDCTVKKMLSYIREVC  206 (319)
T ss_pred             CHHHHHHHHHHhhhccCCchhhhhChHHHHHHHHHHHHhHhhCCCceeC-CCcHHHHHHHHHHHHHhhe
Confidence            888888887653      22221 11112233333333332 4666675 4689999999999887643

>TIGR00017 cmk cytidylate kinase

Probab=98.85  E-value=8.1e-08  Score=82.49  Aligned_cols=25  Identities=16%  Similarity=0.379  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ++|+|.|++||||||+++.|+++|+
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~   27 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLG   27 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999999885

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK08118 topology modulation protein; Reviewed

Probab=98.85  E-value=1.1e-08  Score=84.34  Aligned_cols=96  Identities=19%  Similarity=0.199  Sum_probs=56.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC--CCCHHHHHHHHHHhHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS--HLDDHTIHLLFSANRWEKRSMME  133 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~--~~~~~~~~ll~~a~r~~~~~~i~  133 (259)
                      +-|+|.|++||||||+++.|++.++   ++++.++.-             +..++  ..+.. .          ....++
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~---~~~~~lD~l-------------~~~~~w~~~~~~-~----------~~~~~~   54 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLN---IPVHHLDAL-------------FWKPNWEGVPKE-E----------QITVQN   54 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC---CCceecchh-------------hcccCCcCCCHH-H----------HHHHHH
Confidence            3589999999999999999999985   333332210             11111  11111 0          001122


Q ss_pred             HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC
Q 025041          134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG  195 (259)
Q Consensus       134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R  195 (259)
                      ..++.. ..|+|+.+.+.+..                .+..+|.+||||+|.+++..|+..|
T Consensus        55 ~~~~~~-~wVidG~~~~~~~~----------------~l~~~d~vi~Ld~p~~~~~~R~~~R   99 (167)
T PRK08118         55 ELVKED-EWIIDGNYGGTMDI----------------RLNAADTIIFLDIPRTICLYRAFKR   99 (167)
T ss_pred             HHhcCC-CEEEeCCcchHHHH----------------HHHhCCEEEEEeCCHHHHHHHHHHH
Confidence            233333 46678764432211                1346999999999999998886543

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.85  E-value=3.9e-08  Score=78.89  Aligned_cols=24  Identities=33%  Similarity=0.295  Sum_probs=22.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      |+|.|++||||||+++.|++.++.
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~   25 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGL   25 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCC
Confidence            789999999999999999999943

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=98.84  E-value=1.1e-07  Score=80.85  Aligned_cols=158  Identities=24%  Similarity=0.359  Sum_probs=93.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCe--EEEEecCCCCChHHHHHHHHHhCCCCCC-HHHHHHHHHHhHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHS--VELWRFPDRTTSVGQMISAYLSNQSHLD-DHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~--v~~~~~p~~~~~~g~~ir~~l~~~~~~~-~~~~~ll~~a~r~~~~~~i  132 (259)
                      ++|+|+|.|.|||||.|+.|++.|..+|.+  +.+.+...    +|      +.++.... ...+-    +-|-.....+
T Consensus         2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des----lg------~~~ns~y~~s~~EK----~lRg~L~S~v   67 (281)
T KOG3062|consen    2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES----LG------IEKNSNYGDSQAEK----ALRGKLRSAV   67 (281)
T ss_pred             CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh----cC------CCCcccccccHHHH----HHHHHHHHHH
Confidence            589999999999999999999999988744  33333211    11      11111111 11111    1122222445


Q ss_pred             HHHHhcCCeEEEccccc-chhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC----cchHHHHHH
Q 025041          133 EAKLKAGTTLIVDRYSY-SGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER----YEHLEFQRK  207 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~-s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~----~e~~~~~~r  207 (259)
                      ...+.++++||+|.--| .++-|+.       |+.  .+....-..+|+..+|+|.+.+-...|.+.    |+. +.++.
T Consensus        68 ~R~Lsk~~iVI~DslNyIKGfRYeL-------yC~--ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e~gy~~-e~le~  137 (281)
T KOG3062|consen   68 DRSLSKGDIVIVDSLNYIKGFRYEL-------YCE--AKAARTTYCVVHTAVPQELCREWNSEREDPGEDGYDD-ELLEA  137 (281)
T ss_pred             HhhcccCcEEEEecccccccceeee-------eee--hhccceeEEEEEecCCHHHHHHhcccCCCCCCCCCCH-HHHHH
Confidence            66788899999996433 2222221       111  122334568999999999999988766544    543 66677


Q ss_pred             HHHHHHhhhC-----CCeE-EE--cCCCCHHHHHHHHH
Q 025041          208 VAQCYQMLRD-----SSWK-II--DACQSIEDVEKQLK  237 (259)
Q Consensus       208 v~~~y~~l~~-----~~~~-vI--Da~~s~eev~~~I~  237 (259)
                      +...|++...     .+.. ++  +.+.+++.+.+.+.
T Consensus       138 L~~RyEeP~s~NRWDsPLf~ll~~~~~~~~~~I~~al~  175 (281)
T KOG3062|consen  138 LVQRYEEPNSRNRWDSPLFTLLPDVITLPIDDILKALF  175 (281)
T ss_pred             HHHHhhCCCccccccCcceEEecccCCCcHHHHHHHHh
Confidence            7778887532     2222 22  34567777766654

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=98.84  E-value=1.9e-07  Score=87.06  Aligned_cols=69  Identities=12%  Similarity=0.056  Sum_probs=44.5

Q ss_pred             CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH--HHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC--YQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~--y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                      ..|.+||+++|+++..+|+..|... ...+...++..+  +........++||++.+++++.+++.+.+...
T Consensus       123 ~~D~iI~V~ap~e~ri~Rl~~rRg~-s~~~a~~ri~~Q~~~e~k~~~AD~vIdN~~s~e~l~~~v~~~l~~~  193 (395)
T PRK03333        123 LFHLVVVVDADVEVRVRRLVEQRGM-AEADARARIAAQASDEQRRAVADVWLDNSGTPDELVEAVRALWADR  193 (395)
T ss_pred             hCCEEEEEECCHHHHHHHHHhcCCC-CHHHHHHHHHhcCChHHHHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence            4589999999999999999864221 111222333221  11111223478889999999999888776553

>PLN02772 guanylate kinase

Probab=98.83  E-value=3.7e-08  Score=90.80  Aligned_cols=167  Identities=16%  Similarity=0.189  Sum_probs=92.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEE-EecCCCCChHH--------HHHHHHHhCCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVEL-WRFPDRTTSVG--------QMISAYLSNQSHLDDHTIHLLFSA  123 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~-~~~p~~~~~~g--------~~ir~~l~~~~~~~~~~~~ll~~a  123 (259)
                      ..++|+|.||+|+||+|+++.|.+.+.. .++.+.+ ++.|..+..-|        +.+......+ .+-.+   -.+.-
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g-~FlE~---~e~~G  209 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDG-KFLEF---ASVHG  209 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhC-cccee---eeecC
Confidence            4579999999999999999999987753 3444433 34443211101        1111211111 11000   00111


Q ss_pred             hHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchH
Q 025041          124 NRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHL  202 (259)
Q Consensus       124 ~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~  202 (259)
                      +.|.. ...+...+++|.++|+|=-+              +-..++....+.+-.++++..+.+++.+|+..|+..- ..
T Consensus       210 n~YGTsk~~V~~vl~~Gk~vILdLD~--------------qGar~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGtes-eE  274 (398)
T PLN02772        210 NLYGTSIEAVEVVTDSGKRCILDIDV--------------QGARSVRASSLEAIFIFICPPSMEELEKRLRARGTET-EE  274 (398)
T ss_pred             ccccccHHHHHHHHHhCCcEEEeCCH--------------HHHHHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCC-HH
Confidence            22222 24566777889999887211              1122222223334344444556788999998775432 23


Q ss_pred             HHHHHHHHHHHhhhC------CCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          203 EFQRKVAQCYQMLRD------SSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       203 ~~~~rv~~~y~~l~~------~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      +..+|+..+..++..      ..++++|.  ++|+.++++.++|.
T Consensus       275 ~I~kRL~~A~~Ei~~~~~~~~fD~vIvND--dLe~A~~~L~~iL~  317 (398)
T PLN02772        275 QIQKRLRNAEAELEQGKSSGIFDHILYND--NLEECYKNLKKLLG  317 (398)
T ss_pred             HHHHHHHHHHHHHhhccccCCCCEEEECC--CHHHHHHHHHHHHh
Confidence            566777665444432      24455543  79999999999875

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.83  E-value=7.4e-07  Score=76.95  Aligned_cols=28  Identities=18%  Similarity=0.260  Sum_probs=25.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +.++|+|.|++||||||+++.|+++|+-
T Consensus         3 ~~~~i~i~g~~gsGksti~~~la~~~~~   30 (225)
T PRK00023          3 KAIVIAIDGPAGSGKGTVAKILAKKLGF   30 (225)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3589999999999999999999999953

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=98.83  E-value=2.1e-08  Score=95.12  Aligned_cols=163  Identities=20%  Similarity=0.231  Sum_probs=101.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      ...+.+|+|+|.|+|||...++.|.+.++.+|+.|..+..|..    -+.     ..     ++       ..|+.    
T Consensus       296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~Pt~----~E~-----~~-----~~-------lwRf~----  350 (493)
T TIGR03708       296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAPTD----EEK-----AQ-----HY-------LWRFW----  350 (493)
T ss_pred             CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCcCH----HHH-----cC-----cH-------HHHHH----
Confidence            3568999999999999999999999999999999887766641    011     00     10       12221    


Q ss_pred             HHHHH-hcCCeEEEcccccchhhhhcCCCC--CHHHHHh------hh---ccCCCCCEEEEEeCCHHHHHhhcCCCCCC-
Q 025041          132 MEAKL-KAGTTLIVDRYSYSGVAFSSAKGI--DIEWCKA------PE---IGLLAPDSVLYLDIPPEKAAERGGYGGER-  198 (259)
Q Consensus       132 i~~~l-~~g~~VI~DR~~~s~~ay~~~~gl--~~~~~~~------~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~-  198 (259)
                        +.+ ..|.+.|+||++|..+......|.  +.+|-..      ++   ...+..-+-|||+++.++..+|+..|.+. 
T Consensus       351 --~~lP~~G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p  428 (493)
T TIGR03708       351 --RHIPRRGRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTP  428 (493)
T ss_pred             --HhCCCCCeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCC
Confidence              222 569999999999976654443332  2233222      22   23345568999999999999999865321 


Q ss_pred             -----cch-----HHHHHHHHHHHHhhh------CCCeEEEcCCC---CHHHHHHHHHHHHH
Q 025041          199 -----YEH-----LEFQRKVAQCYQMLR------DSSWKIIDACQ---SIEDVEKQLKEIVL  241 (259)
Q Consensus       199 -----~e~-----~~~~~rv~~~y~~l~------~~~~~vIDa~~---s~eev~~~I~~~i~  241 (259)
                           +.+     .+....-..+|.++-      ..+|++|+++.   .--.|.+.|.+.+.
T Consensus       429 ~k~WK~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK~~ar~~v~~~l~~~l~  490 (493)
T TIGR03708       429 FKRYKITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEANDKRYARIKVLRTVCDAIE  490 (493)
T ss_pred             ccCCcCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCChHHHHHHHHHHHHHHHH
Confidence                 111     122222334444431      16899999863   23335555555444

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=98.78  E-value=2.4e-07  Score=86.41  Aligned_cols=197  Identities=13%  Similarity=0.049  Sum_probs=109.6

Q ss_pred             CCCcccccccCcc---cccCCCCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC
Q 025041           33 CSCTPFRMESSSS---LRIGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ  109 (259)
Q Consensus        33 ~~~~~~~~~~~~~---~~~~~~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~  109 (259)
                      .|-|.||-.+...   +...........|+|.|++||||||+++.|++.++.   ..  ..+..+     +.+.+-+...
T Consensus       194 iSaT~IR~~p~~~w~~i~~~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~---~~--v~E~~R-----~~~~~~~~~~  263 (399)
T PRK08099        194 ISGTQIRENPFRYWEYIPTEVRPFFVRTVAILGGESSGKSTLVNKLANIFNT---TS--AWEYGR-----EYVFSHLGGD  263 (399)
T ss_pred             cCHHHHhhCHHHHHHhcCHHHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCC---Ce--eeeccH-----HHHHHhhcCC
Confidence            3667777666522   222223345678999999999999999999998853   21  122221     2222211111


Q ss_pred             C-C--CCHHHHHHHHHHhHHHHHHHHHHHHhcCCeEEEcccccchhhhhcC-CCCCHHHHHhhhccCCCCCEEEEEeCCH
Q 025041          110 S-H--LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKAPEIGLLAPDSVLYLDIPP  185 (259)
Q Consensus       110 ~-~--~~~~~~~ll~~a~r~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~~~~~~~~PdlvI~Ld~~~  185 (259)
                      + .  ..+... +.  ..+.....  ..+.....++|+|+-+.++.+|... .|....++..+... ...|++++++.++
T Consensus       264 ~~~l~~~D~~~-ia--~~~~~~~~--~~~~~a~~~~f~Dt~~~~t~~y~~~y~g~~~p~l~~~~~~-~ryDlvlll~pd~  337 (399)
T PRK08099        264 EMALQYSDYDK-IA--LGHAQYID--FAVKYANKVAFIDTDFVTTQAFCKKYEGREHPFVQALIDE-YRFDLTILLENNT  337 (399)
T ss_pred             ccCCChhhhHH-HH--hhhHHHHH--HHHHhcCCeEEEeCChHHHHHHHHHhCCCCCHHHHHHHHh-CCCCEEEEcCCCC
Confidence            1 1  111110 11  11111111  1122335699999999999998753 23333444443322 4467888887665


Q ss_pred             HHHHhhcCCCCCCcchHHHHHHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhh
Q 025041          186 EKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTAC  247 (259)
Q Consensus       186 e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~  247 (259)
                      .-..+=+....+.-....|++.+.+.|.+. +.++++|+ +++.++=++++.++|++.+..+
T Consensus       338 Pwv~DGlR~~~D~e~R~~f~~~l~~~l~~~-g~~~v~l~-~g~~~eR~~~a~~~i~~~l~~~  397 (399)
T PRK08099        338 PWVADGLRSLGSSVDRKRFQNLLKEMLKEN-NIEYVHVE-SPDYDKRYLRCVELVDQMLGEQ  397 (399)
T ss_pred             CcccCCcccCCCHHHHHHHHHHHHHHHHHc-CCCEEEEC-CCCHHHHHHHHHHHHHHHhhcc
Confidence            544331111111101135666666666553 35688884 3579999999999999988765

>PRK06696 uridine kinase; Validated

Probab=98.78  E-value=1.2e-07  Score=81.48  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=32.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      .++.+|+|.|++||||||+++.|++.|+..|..++.+
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~   56 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRA   56 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence            4678999999999999999999999998878777653

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=98.77  E-value=6.7e-07  Score=75.71  Aligned_cols=27  Identities=19%  Similarity=0.252  Sum_probs=24.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ++++|+|.|++||||||++..|+++++
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~   28 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRA   28 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            578999999999999999999999873

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.76  E-value=1.2e-07  Score=79.00  Aligned_cols=167  Identities=20%  Similarity=0.312  Sum_probs=86.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEE-EecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVEL-WRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLFSA  123 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~-~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~~a  123 (259)
                      ++++|+|.||+||||+|+++.|.+.+... +..+.+ ++.|..+..-        -+.+.++...+. +-.+.   .|..
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~-fie~~---~~~g   76 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGE-FIEYG---EYDG   76 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTH-EEEEE---EETT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhcccc-EEEEe---eecc
Confidence            47899999999999999999999988643 222322 3433321110        111112111110 00000   0000


Q ss_pred             hHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCC-HHHHHhhcCCCCCCcch
Q 025041          124 NRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIP-PEKAAERGGYGGERYEH  201 (259)
Q Consensus       124 ~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~-~e~~~~R~~~R~d~~e~  201 (259)
                      ..|.. ...+...+++|.++|+|-.+              +-+..+......| ++||+.++ ++.+.+|+..|++.- .
T Consensus        77 ~~YGt~~~~i~~~~~~gk~~il~~~~--------------~g~~~L~~~~~~~-~~IfI~~~s~~~l~~~l~~r~~~~-~  140 (183)
T PF00625_consen   77 NYYGTSKSAIDKVLEEGKHCILDVDP--------------EGVKQLKKAGFNP-IVIFIKPPSPEVLKRRLRRRGDES-E  140 (183)
T ss_dssp             EEEEEEHHHHHHHHHTTTEEEEEETH--------------HHHHHHHHCTTTE-EEEEEEESSHHHHHHHHHTTTHCH-H
T ss_pred             hhhhhccchhhHhhhcCCcEEEEccH--------------HHHHHHHhcccCc-eEEEEEccchHHHHHHHhcccccc-H
Confidence            00000 23455666778888886322              2233333334445 67777655 677888876654321 1


Q ss_pred             HHHHHHHHHHHHhhh---CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          202 LEFQRKVAQCYQMLR---DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       202 ~~~~~rv~~~y~~l~---~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      .+..+++...-..+.   +.+.++.|  .++|+++++|.+.|.+
T Consensus       141 ~~i~~r~~~~~~~~~~~~~fd~vi~n--~~le~~~~~l~~ii~~  182 (183)
T PF00625_consen  141 EEIEERLERAEKEFEHYNEFDYVIVN--DDLEEAVKELKEIIEQ  182 (183)
T ss_dssp             HHHHHHHHHHHHHHGGGGGSSEEEEC--SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHhhcCCEEEEC--cCHHHHHHHHHHHHHh
Confidence            234444433322222   23454444  3799999999998875

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.75  E-value=3.5e-07  Score=87.41  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .|+|.|++||||||+++.|++.++
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg   25 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLD   25 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999999884

>PRK07667 uridine kinase; Provisional

Probab=98.74  E-value=2.9e-07  Score=77.46  Aligned_cols=40  Identities=23%  Similarity=0.422  Sum_probs=34.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD   93 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~   93 (259)
                      ...+|.|.|++||||||+++.|++.+...|.++..+...+
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd   55 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD   55 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence            3479999999999999999999999988888876665443

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.74  E-value=2.5e-07  Score=76.87  Aligned_cols=152  Identities=22%  Similarity=0.226  Sum_probs=76.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC-----CCCChHHHHHHHHHhC-----CCCCCHHHH-HHHHHH-h
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP-----DRTTSVGQMISAYLSN-----QSHLDDHTI-HLLFSA-N  124 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p-----~~~~~~g~~ir~~l~~-----~~~~~~~~~-~ll~~a-~  124 (259)
                      +|.|+|++||||||+++.|++ +   |+.++..+.-     ..+......+.+.+-.     .+.++.... ..+|.. .
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~---g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~   76 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-L---GIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPE   76 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-C---CCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHH
Confidence            489999999999999999988 4   6666543211     1123334444444321     123443221 122210 0


Q ss_pred             H---HH---H---HHHHHHHHh---cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhc
Q 025041          125 R---WE---K---RSMMEAKLK---AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERG  192 (259)
Q Consensus       125 r---~~---~---~~~i~~~l~---~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~  192 (259)
                      .   .+   +   ...+...+.   ...+||+|-.+    .+..             ......|.++++++|+++..+|+
T Consensus        77 ~~~~l~~i~hp~i~~~~~~~~~~~~~~~~vive~pl----L~e~-------------~~~~~~D~vv~V~a~~~~ri~Rl  139 (179)
T cd02022          77 KRKKLEAITHPLIRKEIEEQLAEARKEKVVVLDIPL----LFET-------------GLEKLVDRVIVVDAPPEIQIERL  139 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEehH----hhcC-------------CcHHhCCeEEEEECCHHHHHHHH
Confidence            0   01   0   011221111   12466665321    1211             01134689999999999999999


Q ss_pred             CCCCCCcchHHHHHHHHHHHHh--hhCCCeEEEcCCCCHH
Q 025041          193 GYGGERYEHLEFQRKVAQCYQM--LRDSSWKIIDACQSIE  230 (259)
Q Consensus       193 ~~R~d~~e~~~~~~rv~~~y~~--l~~~~~~vIDa~~s~e  230 (259)
                      ..|+ .+...+...++..+...  .....-++|+++.+++
T Consensus       140 ~~Rd-~~s~~~~~~r~~~Q~~~~~~~~~aD~vI~N~~~~~  178 (179)
T cd02022         140 MKRD-GLSEEEAEARIASQMPLEEKRARADFVIDNSGSLE  178 (179)
T ss_pred             HHcC-CCCHHHHHHHHHhcCCHHHHHHhCCEEEECcCCCC
Confidence            8763 23333455555443211  1111225676666543

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=98.72  E-value=5.9e-07  Score=73.15  Aligned_cols=63  Identities=27%  Similarity=0.356  Sum_probs=41.1

Q ss_pred             CCEEEEEeCCHHHHHhhcCCCCCC--cc-h------HHHHHHHHHHHHhhhCCCeEEEcCCCCH-HHHHHHHHHHH
Q 025041          175 PDSVLYLDIPPEKAAERGGYGGER--YE-H------LEFQRKVAQCYQMLRDSSWKIIDACQSI-EDVEKQLKEIV  240 (259)
Q Consensus       175 PdlvI~Ld~~~e~~~~R~~~R~d~--~e-~------~~~~~rv~~~y~~l~~~~~~vIDa~~s~-eev~~~I~~~i  240 (259)
                      .-.+|||++|++++.+|+..+..|  +. .      .+.+.+....|...+   .++||++..+ ++++++|.+.|
T Consensus        85 ~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~~a---~~~v~~~~~~~~~i~~~i~~~l  157 (158)
T PF01202_consen   85 NGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQAA---DIVVDTDGSPPEEIAEEILEFL  157 (158)
T ss_dssp             HSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHHHS---SEEEETSSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcC---eEEEeCCCCCHHHHHHHHHHHh
Confidence            458999999999999998654332  11 1      112223345666654   4788887666 99999999876

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.72  E-value=7.8e-07  Score=88.16  Aligned_cols=69  Identities=14%  Similarity=0.132  Sum_probs=44.1

Q ss_pred             CCCCCEEEEEeCCHHHHHhhcCC----CCC--CcchHHHHHHHHH-HHHhh-------h-CCCeEEEcCC-CCHHHHHHH
Q 025041          172 LLAPDSVLYLDIPPEKAAERGGY----GGE--RYEHLEFQRKVAQ-CYQML-------R-DSSWKIIDAC-QSIEDVEKQ  235 (259)
Q Consensus       172 ~~~PdlvI~Ld~~~e~~~~R~~~----R~d--~~e~~~~~~rv~~-~y~~l-------~-~~~~~vIDa~-~s~eev~~~  235 (259)
                      +|.-|+.|||++++++..+|...    ++.  .|+  +.++.+.+ -+.+.       . ..+-++||++ .++|||++.
T Consensus       571 ~p~a~~kifl~a~~~~Ra~Rr~~~~~~~~~~~~~~--~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~  648 (661)
T PRK11860        571 FPDAALKVFLTASAEARAERRYKQLISKGISANIA--DLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQ  648 (661)
T ss_pred             CCCCCeEEEEECChhHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHHH
Confidence            46678999999999998777532    121  233  22222221 11111       1 1367899985 799999999


Q ss_pred             HHHHHHH
Q 025041          236 LKEIVLD  242 (259)
Q Consensus       236 I~~~i~~  242 (259)
                      |.+.|..
T Consensus       649 i~~~i~~  655 (661)
T PRK11860        649 VLDWWQE  655 (661)
T ss_pred             HHHHHHh
Confidence            9998864

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=98.72  E-value=1.4e-07  Score=75.58  Aligned_cols=107  Identities=16%  Similarity=0.128  Sum_probs=62.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHH--HHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISA--YLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~--~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      ..+-|.|+|.||+||||++..|++.++   +..+.+         ++.+++  ++..   ++......++..++  .++.
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~~---~~~i~i---------sd~vkEn~l~~g---yDE~y~c~i~DEdk--v~D~   68 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKTG---LEYIEI---------SDLVKENNLYEG---YDEEYKCHILDEDK--VLDE   68 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHhC---CceEeh---------hhHHhhhcchhc---ccccccCccccHHH--HHHH
Confidence            456789999999999999999998774   443322         222221  1111   11000000111111  1245


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG  196 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~  196 (259)
                      +.+.+..|. .|+|-.-.+-+        +          -...|++|.|.+|-+++.+|+..|+
T Consensus        69 Le~~m~~Gg-~IVDyHgCd~F--------p----------erwfdlVvVLr~~~s~LY~RL~sRg  114 (176)
T KOG3347|consen   69 LEPLMIEGG-NIVDYHGCDFF--------P----------ERWFDLVVVLRTPNSVLYDRLKSRG  114 (176)
T ss_pred             HHHHHhcCC-cEEeecccCcc--------c----------hhheeEEEEEecCchHHHHHHHHcC
Confidence            567777764 44563322110        1          1246899999999999999999775

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=98.71  E-value=6.6e-07  Score=79.98  Aligned_cols=70  Identities=20%  Similarity=0.149  Sum_probs=41.9

Q ss_pred             CCCCEEEEEeCCHHHHHhhcCC-CCCC-c----chHHHHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 025041          173 LAPDSVLYLDIPPEKAAERGGY-GGER-Y----EHLEFQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD  242 (259)
Q Consensus       173 ~~PdlvI~Ld~~~e~~~~R~~~-R~d~-~----e~~~~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~  242 (259)
                      ..+..+|||+++++++.+|+.. |..+ .    ...+.+.+.++.+..+.+..-++||++ .+++++.++|.+.+..
T Consensus        84 g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivIDTs~ls~~el~e~I~~~l~~  160 (288)
T PRK05416         84 GIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVIDTSELSVHQLRERIRERFGG  160 (288)
T ss_pred             CCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEECCCCCHHHHHHHHHHHHhc
Confidence            3455789999999999999863 2111 1    112222222222211222122778875 6999999999988744

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.71  E-value=1.4e-07  Score=94.30  Aligned_cols=75  Identities=12%  Similarity=0.061  Sum_probs=49.9

Q ss_pred             CCCCCEEEEEeCCHHHHHhhcCCCCC--CcchHHHHHHHHH-HH---Hhh---h-CCCeEEEcCC-CCHHHHHHHHHHHH
Q 025041          172 LLAPDSVLYLDIPPEKAAERGGYGGE--RYEHLEFQRKVAQ-CY---QML---R-DSSWKIIDAC-QSIEDVEKQLKEIV  240 (259)
Q Consensus       172 ~~~PdlvI~Ld~~~e~~~~R~~~R~d--~~e~~~~~~rv~~-~y---~~l---~-~~~~~vIDa~-~s~eev~~~I~~~i  240 (259)
                      +|..|+-|||++++++..+|...+..  .++  +.++.+.. -+   +..   . ..+.++||++ .++|+|++.|.+.+
T Consensus       152 ~p~a~~K~~l~A~~~~Ra~Rr~~~~~~~~~~--~~~~~~~~Rd~~d~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i  229 (712)
T PRK09518        152 APDAEVRILLTAREEVRQARRSGQDRSETPG--VVLEDVAARDEADSKVTSFLSAADGVTTLDNSDLDFDETLDLLIGLV  229 (712)
T ss_pred             ecCCCeEEEEECCHHHHHHHHHHhhhcCCHH--HHHHHHHHHhhhcccccCCCCCCCCeEEEECCCCCHHHHHHHHHHHH
Confidence            46678999999999998887653321  232  11222111 11   111   1 1467899974 89999999999999


Q ss_pred             HHHHhhhh
Q 025041          241 LDQVTACK  248 (259)
Q Consensus       241 ~~~l~~~~  248 (259)
                      ...+....
T Consensus       230 ~~~~~~~~  237 (712)
T PRK09518        230 EDAIEEQE  237 (712)
T ss_pred             Hhhhhhhh
Confidence            98888765

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=98.67  E-value=2.2e-07  Score=80.00  Aligned_cols=175  Identities=19%  Similarity=0.195  Sum_probs=100.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEe-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      ++.-.++.|++|+||+|++..|.+.+...++..- ..+ +...+++.|..+++++..+.-+++..... ....+..    
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~-~l~~~l~----   88 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVR-LLEKRLE----   88 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHH-HHHhhcc----
Confidence            6788999999999999999999998865332110 011 11124455555555555443232221111 0000100    


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC------CCc------
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG------ERY------  199 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~------d~~------  199 (259)
                       .+.++  ...|.|+++.+..           ..+.+......+|.+|.|++|.+.+.+|+..|.      ..|      
T Consensus        89 -~~~~~--~~~ildg~Prt~~-----------qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~p  154 (235)
T KOG3078|consen   89 -NPRCQ--KGFILDGFPRTVQ-----------QAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNP  154 (235)
T ss_pred             -ccccc--cccccCCCCcchH-----------HHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccC
Confidence             01122  3477888886532           112234456789999999999999999987651      111      


Q ss_pred             -----------c--------hHHHHHHHHHHHHhhh---------CCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhh
Q 025041          200 -----------E--------HLEFQRKVAQCYQMLR---------DSSWKIIDACQSIEDVEKQLKEIVLDQVTACK  248 (259)
Q Consensus       200 -----------e--------~~~~~~rv~~~y~~l~---------~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~  248 (259)
                                 |        ..+..+.....|.+..         ...+..+++.. +++|+..|.+.+...+....
T Consensus       155 Pk~~~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~~~~  230 (235)
T KOG3078|consen  155 PKVPGKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKVPERE  230 (235)
T ss_pred             CccccccccccChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhhhhhh
Confidence                       1        1222333334454321         13566777777 99999999998887665543

>COG0645 Predicted kinase [General function prediction only]

Probab=98.66  E-value=9.5e-07  Score=72.21  Aligned_cols=118  Identities=18%  Similarity=0.190  Sum_probs=74.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhC--------CCCCCHHHHHHHHHHhHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSN--------QSHLDDHTIHLLFSANRW  126 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~--------~~~~~~~~~~ll~~a~r~  126 (259)
                      +.++.+.|.+|+||||++..|++.+.+.     .++        .+.+++-+..        .+.+++......|..   
T Consensus         1 ~~l~l~~Gl~GsGKstlA~~l~~~lgA~-----~lr--------sD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~---   64 (170)
T COG0645           1 GRLVLVGGLPGSGKSTLARGLAELLGAI-----RLR--------SDVIRKRLFGVPEETRGPAGLYSPAATAAVYDE---   64 (170)
T ss_pred             CeEEEEecCCCccHhHHHHHHHhhcCce-----EEe--------hHHHHHHhcCCcccccCCCCCCcHHHHHHHHHH---
Confidence            3688999999999999999999999752     222        1344554443        122333332222211   


Q ss_pred             HHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC
Q 025041          127 EKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE  197 (259)
Q Consensus       127 ~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d  197 (259)
                       ........+..|..||.|.-+....        ..+....+......|-..|.+++|++++.+|+..|..
T Consensus        65 -l~~~A~l~l~~G~~VVlDa~~~r~~--------~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~  126 (170)
T COG0645          65 -LLGRAELLLSSGHSVVLDATFDRPQ--------ERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG  126 (170)
T ss_pred             -HHHHHHHHHhCCCcEEEecccCCHH--------HHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence             1123345678899999996544221        1122333334455677889999999999999987743

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=98.66  E-value=2.3e-07  Score=77.40  Aligned_cols=151  Identities=19%  Similarity=0.171  Sum_probs=76.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec-----CCCCChHHHHHHHHHh-----CCCCCCHHHHH-HHHHH-
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF-----PDRTTSVGQMISAYLS-----NQSHLDDHTIH-LLFSA-  123 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~-----p~~~~~~g~~ir~~l~-----~~~~~~~~~~~-ll~~a-  123 (259)
                      ++|.|+|..||||||+++.|++    .|+.++..+.     -..+.+..+.+.+.+-     ..+.++..... ++|.. 
T Consensus         1 ~iIglTG~igsGKStv~~~l~~----~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~   76 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE----LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDP   76 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH----TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH----CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCH
Confidence            5899999999999999999977    4777764321     1113444455555432     22345543322 22211 


Q ss_pred             hHHHHH---------HHHHHHHh---cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhh
Q 025041          124 NRWEKR---------SMMEAKLK---AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAER  191 (259)
Q Consensus       124 ~r~~~~---------~~i~~~l~---~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R  191 (259)
                      .....+         ..+...+.   ....+|+|--.    .|..             ......|.+|++.+|+++..+|
T Consensus        77 ~~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pL----L~E~-------------~~~~~~D~vi~V~a~~e~ri~R  139 (180)
T PF01121_consen   77 EKLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPL----LFES-------------GLEKLCDEVIVVYAPEEIRIKR  139 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TT----TTTT-------------TGGGGSSEEEEEE--HHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcch----hhhh-------------hHhhhhceEEEEECCHHHHHHH
Confidence            111111         11221111   22567766322    1211             0113468999999999999999


Q ss_pred             cCCCCCCcchHHHHHHHHHHH-----HhhhCCCeEEEcCCCCHHH
Q 025041          192 GGYGGERYEHLEFQRKVAQCY-----QMLRDSSWKIIDACQSIED  231 (259)
Q Consensus       192 ~~~R~d~~e~~~~~~rv~~~y-----~~l~~~~~~vIDa~~s~ee  231 (259)
                      +..|+ .+...+...++..+.     ...++   .+||++++++|
T Consensus       140 l~~R~-~~~~~~~~~ri~~Q~~~~~k~~~ad---~vI~N~g~~~~  180 (180)
T PF01121_consen  140 LMERD-GLSEEEAEARIASQMPDEEKRKRAD---FVIDNNGSLEE  180 (180)
T ss_dssp             HHHHH-TSTHHHHHHHHHTS--HHHHHHH-S---EEEE-SSHHH-
T ss_pred             HHhhC-CCcHHHHHHHHHhCCCHHHHHHhCC---EEEECCCCCCC
Confidence            98762 333334444443322     12233   68888888775

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.65  E-value=3.9e-07  Score=72.31  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +|+|.|++||||||+++.|++.++
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~   24 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLG   24 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999984

>PHA03134 thymidine kinase; Provisional

Probab=98.61  E-value=3.8e-06  Score=75.93  Aligned_cols=162  Identities=18%  Similarity=0.180  Sum_probs=93.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC-C-CChHH-HHHHHHHh-----CCCCCCHH-HHHHHH-H
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD-R-TTSVG-QMISAYLS-----NQSHLDDH-TIHLLF-S  122 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~-~-~~~~g-~~ir~~l~-----~~~~~~~~-~~~ll~-~  122 (259)
                      .+=..|.|+|+.|.||||.++.|++.- ..+..++.+.||= + .+.++ +.|..++.     +.++++.. +..+.. .
T Consensus        11 ~~~~rvYlDG~~GvGKTT~~~~l~~~~-~~~~~vl~~pEPM~YWr~~f~~d~i~~Iy~~q~r~~~G~~s~~~aa~~~a~~   89 (340)
T PHA03134         11 VRIVRIYLDGAYGIGKSTTGRVMASAA-SGGGPTLYFPEPMAYWRTLFETDVVSGIYDAQNRKQQGSLAAEDAAGITAHY   89 (340)
T ss_pred             ccEEEEEEeCCCcCCHHHHHHHHHHhc-cCCCceEEecCcHHHHHHHhhhhHHHHHHHHHhHHhccCcchhHHHHHHHHH
Confidence            445679999999999999998887632 2344577777772 0 01111 34544433     12334332 111111 1


Q ss_pred             HhHHH----HH-HHHHHHHh------c---CCeEEEcccccchh-hhhcC---CC-CCHHHHHhhhccCCC--C-CEEEE
Q 025041          123 ANRWE----KR-SMMEAKLK------A---GTTLIVDRYSYSGV-AFSSA---KG-IDIEWCKAPEIGLLA--P-DSVLY  180 (259)
Q Consensus       123 a~r~~----~~-~~i~~~l~------~---g~~VI~DR~~~s~~-ay~~~---~g-l~~~~~~~~~~~~~~--P-dlvI~  180 (259)
                      -.++.    .. ..+.+.+.      .   ..++|+||++.+.. +|-.+   .| +...-+..+...++.  | |.+|+
T Consensus        90 Q~~fatP~~~~~~~~~~~~~~~~~~~~~~pd~~vI~DRHPlsA~vcFP~ar~~~G~ls~~~~~~l~~~~p~~~pG~niVl  169 (340)
T PHA03134         90 QARFATPYLILHDRLSTLFGPPSLARGGRPDVTLVFDRHPVASCVCFPLARYLLGDMSACALLALAATLPREPPGGNLVV  169 (340)
T ss_pred             HHHhcChHHHHHHHHHHhcCCCCCCCCCCCCeeeeeccCCCCccccchHHHHhcCCCCHHHHHHHHHhCCCCCCCCeEEE
Confidence            01110    01 22333332      1   26899999998654 33222   23 333444444444443  5 89999


Q ss_pred             EeCCHHHHHhhcCCCCCCcc--hHHHHHHHHHHHHhh
Q 025041          181 LDIPPEKAAERGGYGGERYE--HLEFQRKVAQCYQML  215 (259)
Q Consensus       181 Ld~~~e~~~~R~~~R~d~~e--~~~~~~rv~~~y~~l  215 (259)
                      ++.++++..+|+..|+...|  +.+|+..++..|..+
T Consensus       170 ~~l~~~e~~~Rl~~R~R~gE~id~~yL~~l~n~Y~~l  206 (340)
T PHA03134        170 TTLNPDEHLRRLRARARIGEQIDAKLIAALRNVYAML  206 (340)
T ss_pred             EeCCHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Confidence            99999999999987754334  468888888888654

>PHA03135 thymidine kinase; Provisional

Probab=98.60  E-value=1e-06  Score=79.67  Aligned_cols=160  Identities=19%  Similarity=0.146  Sum_probs=86.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCC--ChHHHHHHHHHhC-----CCCCCH-HHH------HH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRT--TSVGQMISAYLSN-----QSHLDD-HTI------HL  119 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~--~~~g~~ir~~l~~-----~~~~~~-~~~------~l  119 (259)
                      +=..|.|+|+.|+||||+++.|++... .|..+..+.||-.-  +.+.+.|..++.-     .+.++. .+.      +.
T Consensus         9 ~~~rIYlDG~~GvGKTT~~~~l~~~~~-~~~~vl~vpEPM~YWr~~f~d~i~~Iy~tq~r~~~G~ls~~~as~~~~~~Q~   87 (343)
T PHA03135          9 QLIRVYLDGPFGIGKTSMLNEMPDHSP-DGVPVLKVFEPMKYWRCYFTDLVVAVNDTPERRRRGELSLFQSSMIVAALQA   87 (343)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHHhcC-CCCceEEecCcHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhccHHHHHHHH
Confidence            446799999999999999988887542 24446777777311  1123444444331     123321 111      11


Q ss_pred             HHHHhHHHHH-HHHHHHHh--------cCCeEEEcccccchh-hhhcCC---C-CCHHHHHhhhccC----CCCCEEEEE
Q 025041          120 LFSANRWEKR-SMMEAKLK--------AGTTLIVDRYSYSGV-AFSSAK---G-IDIEWCKAPEIGL----LAPDSVLYL  181 (259)
Q Consensus       120 l~~a~r~~~~-~~i~~~l~--------~g~~VI~DR~~~s~~-ay~~~~---g-l~~~~~~~~~~~~----~~PdlvI~L  181 (259)
                      -|+. -+... +.+.+.+.        ...+||+||++.+.. +|-.++   | +..+-+..+...+    +-.+++|+.
T Consensus        88 kfat-P~~~~~~~l~~~~~~~~~~~~~p~~~lIfDRHPlSA~vcFPlaryl~G~ls~~~l~sl~~~lp~~~pG~niVl~~  166 (343)
T PHA03135         88 KFAD-PYLVFHERLSSKCHGKIGTRGNPSLILILDRHPVSATVCFPIARHLLGDCSLEMLISSIIRLPLEPPGCNLVITI  166 (343)
T ss_pred             Hhcc-hHHHHHHHHHHHhcccCCCCCCCCceEEEecCCCCCceeeehhhcccCCCCHHHHHHHHHhCCcCCCCCeEEEEE
Confidence            1111 00101 12222221        136899999998654 333332   2 2233232322222    223556665


Q ss_pred             eCCHHHHHhhcCCCCCCcc--hHHHHHHHHHHHHhh
Q 025041          182 DIPPEKAAERGGYGGERYE--HLEFQRKVAQCYQML  215 (259)
Q Consensus       182 d~~~e~~~~R~~~R~d~~e--~~~~~~rv~~~y~~l  215 (259)
                      ..++++..+|+.+|+...|  +.+|+..++..|..+
T Consensus       167 L~~~~E~~rRl~~R~R~gE~~d~~yL~aL~n~Y~~l  202 (343)
T PHA03135        167 LPDEKEHVNRLSSRNRPGETTDRNMLRALNAVYSSL  202 (343)
T ss_pred             CCCHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Confidence            5578999999987754333  467888888877554

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=98.60  E-value=3.1e-06  Score=70.98  Aligned_cols=164  Identities=18%  Similarity=0.156  Sum_probs=91.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-------cCCCCChHHHHHHHHHhCC-----CCCCHHHH-HHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-------FPDRTTSVGQMISAYLSNQ-----SHLDDHTI-HLLFS  122 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-------~p~~~~~~g~~ir~~l~~~-----~~~~~~~~-~ll~~  122 (259)
                      .++.++|..||||||+++.+.    +.|++++..+       +|+  ++.-..|.+.+-++     +.++.... ..+|.
T Consensus         2 ~iVGLTGgiatGKStVs~~f~----~~G~~vIDaD~vaR~vv~PG--~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~   75 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK----ALGIPVIDADVVAREVVEPG--TPAYRRIVEAFGTEILLEDGEINRKVLGKRVFS   75 (225)
T ss_pred             eEEEeecccccChHHHHHHHH----HcCCcEecHHHHHHHHhcCC--ChHHHHHHHHhCceeeccCCcccHHHHhHHHhC
Confidence            368999999999999998875    4578877422       343  44445555554322     22322111 11111


Q ss_pred             --------------HhHHHHHHHHHHHHhcC-CeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHH
Q 025041          123 --------------ANRWEKRSMMEAKLKAG-TTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEK  187 (259)
Q Consensus       123 --------------a~r~~~~~~i~~~l~~g-~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~  187 (259)
                                    +-|++.+..+...+..| .++|+|-    .+.|..      .+       ...-..+|..-+|.++
T Consensus        76 ~~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDi----PLLFE~------~~-------~~~~~~tvvV~cd~~~  138 (225)
T KOG3220|consen   76 DPKKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDI----PLLFEA------KL-------LKICHKTVVVTCDEEL  138 (225)
T ss_pred             CHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEec----hHHHHH------hH-------HhheeeEEEEEECcHH
Confidence                          11111122333344455 4566652    222211      01       1122356667779999


Q ss_pred             HHhhcCCCCCCcchHHHHHHHHHHHH--hhhCCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          188 AAERGGYGGERYEHLEFQRKVAQCYQ--MLRDSSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       188 ~~~R~~~R~d~~e~~~~~~rv~~~y~--~l~~~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                      ..+|+..|+ .....+...|+.++.-  +..+-.-++||+++++++..++|..++...
T Consensus       139 Ql~Rl~~Rd-~lse~dAe~Rl~sQmp~~~k~~~a~~Vi~Nng~~~~l~~qv~~v~~~~  195 (225)
T KOG3220|consen  139 QLERLVERD-ELSEEDAENRLQSQMPLEKKCELADVVIDNNGSLEDLYEQVEKVLALL  195 (225)
T ss_pred             HHHHHHHhc-cccHHHHHHHHHhcCCHHHHHHhhheeecCCCChHHHHHHHHHHHHHh
Confidence            999999885 2222344455544331  111234589999999999999999876543

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.59  E-value=6.6e-06  Score=73.68  Aligned_cols=172  Identities=17%  Similarity=0.224  Sum_probs=87.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC-------------------CCCC
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ-------------------SHLD  113 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~-------------------~~~~  113 (259)
                      .++.+|+|.|++||||||+|..|+++|+   .+.+. .    ...+-+.+|.++..+                   ...+
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~---~~~vi-~----~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~  161 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLG---IRSVI-G----TDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPE  161 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC---CCEEE-e----chHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCc
Confidence            4678999999999999999999999994   33221 1    111222222221100                   0001


Q ss_pred             H-HHHHHHHHHhHHHH-H-HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCC-EEEEEe-CCHHHH
Q 025041          114 D-HTIHLLFSANRWEK-R-SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPD-SVLYLD-IPPEKA  188 (259)
Q Consensus       114 ~-~~~~ll~~a~r~~~-~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~Pd-lvI~Ld-~~~e~~  188 (259)
                      + ....++-....+.. . ..+..++.+|..+|+++...           .++|+.....  ..|. +.++|. -+.+..
T Consensus       162 ~~~l~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl-----------~P~~i~~~~~--~~~~~i~~~l~i~~ee~h  228 (301)
T PRK04220        162 PPVIYGFERHVEPVSVGVEAVIERALKEGISVIIEGVHI-----------VPGFIKEKYL--ENPNVFMFVLTLSDEEAH  228 (301)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCC-----------CHHHHHHhhh--cCCCEEEEEEEECCHHHH
Confidence            1 00000000000000 1 34566677888888886532           3456654332  2343 344555 455666


Q ss_pred             HhhcCCC------C-CCc-chHHHHHHHHHHHHhhh-CCCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 025041          189 AERGGYG------G-ERY-EHLEFQRKVAQCYQMLR-DSSWKIIDACQSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       189 ~~R~~~R------~-d~~-e~~~~~~rv~~~y~~l~-~~~~~vIDa~~s~eev~~~I~~~i~~~l~~  246 (259)
                      .+|...|      . ++| ...+....++....+.+ ..++-+||+ .++++..+.+.+.|.+.+..
T Consensus       229 ~~RF~~R~~~~~r~~~~y~~~~~~ir~iq~~l~~~a~~~~ip~I~n-~~i~~s~~~~~~~i~~~~~~  294 (301)
T PRK04220        229 KARFYARARVSRRPAERYLKNFEIIREINDYIVEKAKKHGVPVIEN-ISIEETVDKILEIITERLSK  294 (301)
T ss_pred             HHHHHHHHhhhCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCeecC-ccHHHHHHHHHHHHHHHHHH
Confidence            7775433      1 112 11222223333333322 246667875 46778788877777776644

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.56  E-value=9.4e-08  Score=73.91  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l   79 (259)
                      |+|.|++||||||+++.|++++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999997

...

>COG2326 Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=2.3e-07  Score=80.19  Aligned_cols=117  Identities=21%  Similarity=0.256  Sum_probs=75.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      ....+|+|+|-|+|||.-.++.+.+.|+.+|+.|+-+..|. +...+           +        .|+ .|+     +
T Consensus        72 ~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval~aPt-~~E~~-----------q--------wY~-qRy-----~  125 (270)
T COG2326          72 GQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVALPAPT-DRERG-----------Q--------WYF-QRY-----V  125 (270)
T ss_pred             CCeEEEEEecccccCCCchhHHHhhhcCCceeEEeecCCCC-hHhhc-----------c--------HHH-HHH-----H
Confidence            45689999999999999999999999999998887666554 11100           0        011 122     1


Q ss_pred             HHHHhcCCeEEEcccccchhhhhcCCCC--CHHH---HH------hhhccCCCCCEEEEEeCCHHHHHhhcCCC
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSSAKGI--DIEW---CK------APEIGLLAPDSVLYLDIPPEKAAERGGYG  195 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl--~~~~---~~------~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R  195 (259)
                      ...=..|.+||+||++|.........|.  +.++   ++      ++......--+-+||+++.++..+|...|
T Consensus       126 ~~lPa~GeiviFdRSwYnr~gVeRVmGfct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is~eeQ~~RF~~R  199 (270)
T COG2326         126 AHLPAAGEIVIFDRSWYNRAGVERVMGFCTPKQYKRFLREIPEFERMLVESGIILVKFWLSISREEQLERFLER  199 (270)
T ss_pred             HhCCCCCeEEEechhhccccCeeeccccCCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCCHHHHHHHHHHH
Confidence            2222569999999999854332222332  2222   22      22222233447899999999999998866

>PRK06761 hypothetical protein; Provisional

Probab=98.54  E-value=4.4e-06  Score=74.37  Aligned_cols=39  Identities=31%  Similarity=0.429  Sum_probs=33.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD   93 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~   93 (259)
                      +++|+|+|++||||||+++.|++.+...|+++..+..+.
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~   41 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGN   41 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCC
Confidence            579999999999999999999999988888887655443

>TIGR00235 udk uridine kinase

Probab=98.54  E-value=4.3e-06  Score=71.02  Aligned_cols=30  Identities=20%  Similarity=0.385  Sum_probs=27.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..+|.+|+|.|++||||||+++.|...+..
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            357899999999999999999999998864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK07261 topology modulation protein; Provisional

Probab=98.50  E-value=2.6e-07  Score=76.34  Aligned_cols=98  Identities=14%  Similarity=0.096  Sum_probs=56.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK  135 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~  135 (259)
                      +.|+|.|++||||||+++.|++.++   ++++..+.-...           .+....+. ..          ....+...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~---~~~i~~D~~~~~-----------~~~~~~~~-~~----------~~~~~~~~   55 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYN---CPVLHLDTLHFQ-----------PNWQERDD-DD----------MIADISNF   55 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhC---CCeEecCCEEec-----------cccccCCH-HH----------HHHHHHHH
Confidence            3589999999999999999998874   333322110000           00000110 00          01123344


Q ss_pred             HhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCC
Q 025041          136 LKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGY  194 (259)
Q Consensus       136 l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~  194 (259)
                      +.++. +|+|+.+.. ..+.              ..+...|.+|||++|.+++..|+..
T Consensus        56 ~~~~~-wIidg~~~~-~~~~--------------~~l~~ad~vI~Ld~p~~~~~~R~lk   98 (171)
T PRK07261         56 LLKHD-WIIDGNYSW-CLYE--------------ERMQEADQIIFLNFSRFNCLYRAFK   98 (171)
T ss_pred             HhCCC-EEEcCcchh-hhHH--------------HHHHHCCEEEEEcCCHHHHHHHHHH
Confidence            55565 778887542 1111              0122458999999999999888743

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.47  E-value=7.5e-07  Score=62.49  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      +|+|+|++||||||+++.|++.|
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999999998

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=98.45  E-value=9e-06  Score=82.33  Aligned_cols=69  Identities=19%  Similarity=0.198  Sum_probs=44.0

Q ss_pred             CCCCCEEEEEeCCHHHHHhhcCC-C--CCCcchHHHHHHHHH-HHHhh-------h-CCCeEEEcCC-CCHHHHHHHHHH
Q 025041          172 LLAPDSVLYLDIPPEKAAERGGY-G--GERYEHLEFQRKVAQ-CYQML-------R-DSSWKIIDAC-QSIEDVEKQLKE  238 (259)
Q Consensus       172 ~~~PdlvI~Ld~~~e~~~~R~~~-R--~d~~e~~~~~~rv~~-~y~~l-------~-~~~~~vIDa~-~s~eev~~~I~~  238 (259)
                      +|.-++-|||++++++..+|-.. .  ...|+  +.++.+.+ -+...       . ..+.++||++ .++|+|++.|.+
T Consensus       204 fPdA~~KifL~As~e~RA~RR~~e~~~~~~~~--~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts~l~ieevv~~i~~  281 (863)
T PRK12269        204 FVDADLKCYLDASIEARVARRWAQGTSRLSKQ--ELEQRMRARDAHDRARTVGGLRCAPDALYVDTSCLTIEEVCERIAR  281 (863)
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHhhhccCCHH--HHHHHHHHhhhhhccCccCCCccCCCeEEEECCCCCHHHHHHHHHH
Confidence            56677999999999998776421 1  11222  22222321 22221       1 1467899975 899999999999


Q ss_pred             HHHH
Q 025041          239 IVLD  242 (259)
Q Consensus       239 ~i~~  242 (259)
                      .+..
T Consensus       282 ~~~~  285 (863)
T PRK12269        282 EAHR  285 (863)
T ss_pred             HHHh
Confidence            8875

>COG3911 Predicted ATPase [General function prediction only]

Probab=98.43  E-value=1.4e-05  Score=64.17  Aligned_cols=170  Identities=15%  Similarity=0.067  Sum_probs=83.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      ++-++.+++|.+|+||||+.+.|++    .|+.++  .++.+     +.|..--..++..-|+....+|+.--..+...-
T Consensus         7 nR~~~fIltGgpGaGKTtLL~aLa~----~Gfatv--ee~~r-----~ii~~es~~gg~~lPW~D~~afael~~~~~l~q   75 (183)
T COG3911           7 NRHKRFILTGGPGAGKTTLLAALAR----AGFATV--EEAGR-----DIIALESAQGGTALPWTDPGAFAELVGLQRLRQ   75 (183)
T ss_pred             ccceEEEEeCCCCCcHHHHHHHHHH----cCceee--ccchh-----hHHHHHHhcCCCcCCccChHHHHHHHHHHHHHH
Confidence            3447899999999999999988866    466443  33321     233322223322223333333322111111000


Q ss_pred             HHHHhcCCeEEEcccccchhhhhc-CCCCC-HHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc-hHHHHHHHH
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSS-AKGID-IEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE-HLEFQRKVA  209 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~-~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e-~~~~~~rv~  209 (259)
                      ......+..|++||.+.+.++|.. .-|.. .+.+..+..... .+--|||--|.-.+.+--..|...++ ...+.+.+.
T Consensus        76 ~r~~~~~~~vFfDR~~~da~a~l~~lsga~la~~v~~~~~~~~-Yn~rVfl~qp~~~iyqqde~Rk~tldeAv~~~e~lv  154 (183)
T COG3911          76 TRSAAVGGRVFFDRGPPDALAYLRFLSGALLADEVATIVREGR-YNPRVFLVQPWPFIYQQDEERKITLDEAVAFYEVLV  154 (183)
T ss_pred             hhcccccCceeeccCcHHHHHHHHHhcccHHHHHHHHHHHhcC-CCCcEEecCCccccccchhhcccCHHHHHHHHHHHH
Confidence            111245678999999999988865 22332 122333322221 12233443333333322222222222 356677778


Q ss_pred             HHHHhhhCCCeEEEcCCCCHHHHHHHH
Q 025041          210 QCYQMLRDSSWKIIDACQSIEDVEKQL  236 (259)
Q Consensus       210 ~~y~~l~~~~~~vIDa~~s~eev~~~I  236 (259)
                      +.|.++. ..++.| .-.++++=+.-|
T Consensus       155 ~aYt~LG-yelv~l-p~a~Ve~Rv~fV  179 (183)
T COG3911         155 AAYTELG-YELVPL-PPAPVEDRVRFV  179 (183)
T ss_pred             HHHHhcC-ceeeec-CCccHHHHHHHH
Confidence            8898874 233333 234555544444

>PTZ00301 uridine kinase; Provisional

Probab=98.42  E-value=5e-06  Score=71.05  Aligned_cols=28  Identities=21%  Similarity=0.331  Sum_probs=25.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +..+|.|.|++||||||+|+.|.+.+..
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~   29 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELMA   29 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence            4579999999999999999999998854

>PRK06547 hypothetical protein; Provisional

Probab=98.42  E-value=6.8e-07  Score=74.04  Aligned_cols=29  Identities=21%  Similarity=0.244  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+.++|.|.|++||||||+++.|++.++
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~   40 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTG   40 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45678999999999999999999999874

>COG4639 Predicted kinase [General function prediction only]

Probab=98.37  E-value=6.9e-06  Score=66.34  Aligned_cols=128  Identities=19%  Similarity=0.145  Sum_probs=70.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhC--CCCCCHHHHHHHHHHhHHHHH-HH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSN--QSHLDDHTIHLLFSANRWEKR-SM  131 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~--~~~~~~~~~~ll~~a~r~~~~-~~  131 (259)
                      ..++++.|++||||||.++......     .++  +        -+.++..+..  ....+.....+.     ++.+ ..
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n~~~~-----~~l--s--------ld~~r~~lg~~~~~e~sqk~~~~~-----~~~l~~~   61 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKENFLQN-----YVL--S--------LDDLRLLLGVSASKENSQKNDELV-----WDILYKQ   61 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHhCCCc-----cee--c--------HHHHHHHhhhchhhhhccccHHHH-----HHHHHHH
Confidence            3589999999999999997643211     111  1        1223332210  000000000001     1111 23


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC  211 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~  211 (259)
                      .+..+++|+..|.|-.--..        -+..-+..+.+.+..-+.+|++|+|++.|.+|...| +++-+.+...++.+.
T Consensus        62 l~qrl~~Gk~tiidAtn~rr--------~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~-~Rqv~~~VI~r~~r~  132 (168)
T COG4639          62 LEQRLRRGKFTIIDATNLRR--------EDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR-ERQVPEEVIPRMLRE  132 (168)
T ss_pred             HHHHHHcCCeEEEEcccCCH--------HHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc-chhCCHHHHHHHHHH
Confidence            35567889999998543210        012334455556666778899999999999998743 555445555555444

>PHA03138 thymidine kinase; Provisional

Probab=98.36  E-value=9.7e-06  Score=73.40  Aligned_cols=39  Identities=18%  Similarity=0.063  Sum_probs=30.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD   93 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~   93 (259)
                      -..|.|+|+.|+||||.++.+.+.+...+-.+..+.||-
T Consensus        12 ~~riYleG~~GvGKTT~~~~~l~~~~~~~~~vl~vpEPm   50 (340)
T PHA03138         12 ILRIYLDGAFGIGKTTAAEAFLHGFAINPNRIFFIGEPL   50 (340)
T ss_pred             EEEEEEECCCCcCHHhHHHHHHHhhhcCCCceEEeeCch
Confidence            356999999999999999988887765444466777773

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=98.34  E-value=5.1e-07  Score=81.60  Aligned_cols=117  Identities=24%  Similarity=0.211  Sum_probs=76.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH--
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS--  130 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~--  130 (259)
                      .+|--|+++|.+|+||||+.-.|.+.|...|+++..++        |+.||.-+...-.+++.        +|.+..+  
T Consensus        48 frgctvw~tglsgagkttis~ale~~l~~~gipcy~ld--------gdnirhgl~knlgfs~e--------dreenirri  111 (627)
T KOG4238|consen   48 FRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLD--------GDNIRHGLNKNLGFSPE--------DREENIRRI  111 (627)
T ss_pred             ccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccC--------cchhhhhhhhccCCCch--------hHHHHHHHH
Confidence            46788999999999999999999999999998776443        56777776644233331        2333321  


Q ss_pred             -HHHHHH-hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcC
Q 025041          131 -MMEAKL-KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGG  193 (259)
Q Consensus       131 -~i~~~l-~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~  193 (259)
                       .+.... ..|-+.|.  ++.|.+  +.    |..-.+.+......|.+-+|+++|.++|.+|-.
T Consensus       112 aevaklfadaglvcit--sfispf--~~----dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~  168 (627)
T KOG4238|consen  112 AEVAKLFADAGLVCIT--SFISPF--AK----DRENARKIHESAGLPFFEVFVDAPLNVCEQRDV  168 (627)
T ss_pred             HHHHHHHhcCCceeee--hhcChh--hh----hhhhhhhhhcccCCceEEEEecCchhhhhhcCh
Confidence             222222 34533332  333332  21    223344555666789999999999999999854

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=98.33  E-value=4.2e-05  Score=62.16  Aligned_cols=166  Identities=17%  Similarity=0.125  Sum_probs=91.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhC---CC---CCCHHHHHHHHHHhHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSN---QS---HLDDHTIHLLFSANRWEK  128 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~---~~---~~~~~~~~ll~~a~r~~~  128 (259)
                      -+.++|.|+-.|||||++++|+..++..              ...+--|+++..   ++   .++++....+      .+
T Consensus         8 ~K~VailG~ESsGKStLv~kLA~~fnt~--------------~~wEY~Re~v~~~l~gdeal~y~Dy~~ia~------Gq   67 (187)
T COG3172           8 VKTVAILGGESSGKSTLVNKLANIFNTT--------------SAWEYGREYVFEHLGGDEALQYSDYAKIAL------GQ   67 (187)
T ss_pred             heeeeeecCcccChHHHHHHHHHHhCCC--------------chhHHHHHHHHHHhCCchhhhhccHHHHHh------hh
Confidence            3789999999999999999999999741              001222333221   11   1222221111      11


Q ss_pred             HHHHHHHH-hcCCeEEEcccccchhhhhc-CCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc---h-H
Q 025041          129 RSMMEAKL-KAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE---H-L  202 (259)
Q Consensus       129 ~~~i~~~l-~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e---~-~  202 (259)
                      ..-...+. ....++|+|--+.++.+|.. ..|-..+|+...-.. ...|++++|.-+  +-.  ...+....+   + -
T Consensus        68 ~~~~d~av~~a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~-~r~DL~lLl~p~--t~w--vaDG~R~~~~~~~R~  142 (187)
T COG3172          68 AAYEDAAVRYANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAE-YRFDLTLLLEPN--TPW--VADGLRSLGSSVQRQ  142 (187)
T ss_pred             HHHHHHHHhCCCceEEEeccHHHHHHHHHHHcccCCchHHHHHhh-cccceEEEcCCC--Cce--eCCCccccccHhHHH
Confidence            11111111 23579999988888888865 123222355433322 346888888443  321  111111111   1 3


Q ss_pred             HHHHHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhh
Q 025041          203 EFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTAC  247 (259)
Q Consensus       203 ~~~~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~  247 (259)
                      +|++.+.++..+. ..++++|++. +-++=+.+..++|.+++.++
T Consensus       143 ~F~~~l~~~L~~~-~~~~v~i~~~-~y~eR~~~~~~aV~ell~~~  185 (187)
T COG3172         143 EFQNLLEQMLEEN-NIPFVVIEGE-DYLERYLQAVEAVEELLGEK  185 (187)
T ss_pred             HHHHHHHHHHHHh-CCcEEEEcCC-CHHHHHHHHHHHHHHHHhcc
Confidence            5666665544433 4588899864 67777788888888877653

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.32  E-value=3.1e-05  Score=73.07  Aligned_cols=29  Identities=28%  Similarity=0.279  Sum_probs=26.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .++.+|+|.|++|+||||++..|+++++.
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~  281 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGI  281 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            36899999999999999999999999853

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.28  E-value=8.5e-06  Score=68.48  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +|.|.|++||||||+++.|...+.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~   24 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG   24 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999883

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.22  E-value=1.2e-05  Score=77.37  Aligned_cols=102  Identities=13%  Similarity=0.158  Sum_probs=66.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      .++.+|++.|++||||||+++.+.+..   |+.++  +.        +.+..          + ..         ....+
T Consensus       367 ~~p~LVil~G~pGSGKST~A~~l~~~~---g~~~v--n~--------D~lg~----------~-~~---------~~~~a  413 (526)
T TIGR01663       367 APCEMVIAVGFPGAGKSHFCKKFFQPA---GYKHV--NA--------DTLGS----------T-QN---------CLTAC  413 (526)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHc---CCeEE--Cc--------HHHHH----------H-HH---------HHHHH
Confidence            467899999999999999999998864   44322  21        11100          0 00         01234


Q ss_pred             HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG  195 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R  195 (259)
                      +.++++|..||+|.-..+.-.        ...+..+......|-..||+++|.+++.+|+..|
T Consensus       414 ~~~L~~G~sVVIDaTn~~~~~--------R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R  468 (526)
T TIGR01663       414 ERALDQGKRCAIDNTNPDAAS--------RAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFR  468 (526)
T ss_pred             HHHHhCCCcEEEECCCCCHHH--------HHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhh
Confidence            567889999999864332111        1222333344556778999999999999999776

Note that the EC number for the kinase function is: 2.7.1.78

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=98.21  E-value=2.7e-05  Score=65.38  Aligned_cols=169  Identities=15%  Similarity=0.222  Sum_probs=85.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe---cCCCCCh-------------------HHHHHHHHHhCCC
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR---FPDRTTS-------------------VGQMISAYLSNQS  110 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~---~p~~~~~-------------------~g~~ir~~l~~~~  110 (259)
                      .|..+|.|.|...|||||+|+.|...|..  .+++.-+   .|..+.+                   +++.|...+.+..
T Consensus         2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~--~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~   79 (225)
T KOG3308|consen    2 MKTLIVGISGCTNSGKTTLAKSLHRFFPG--CSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRH   79 (225)
T ss_pred             ceEEEEEeecccCCCHhHHHHHHHHHccC--CeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCcc
Confidence            35678999999999999999999999974  3444311   1110000                   0111111111111


Q ss_pred             CCCHHHHHHHHHHhHHHHH-HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHH
Q 025041          111 HLDDHTIHLLFSANRWEKR-SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAA  189 (259)
Q Consensus       111 ~~~~~~~~ll~~a~r~~~~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~  189 (259)
                      ..+.....++-.++ +++. ......-.+..+||+|++..    |...     +       ....-|..|++.+|.+++.
T Consensus        80 ~~~~ar~~~v~~~~-~~~~~~~~q~~~~~~~iviidGfmi----y~y~-----p-------~~~~~d~~im~~~~y~~~k  142 (225)
T KOG3308|consen   80 NAPEAREHLVSYAN-FEHYAQQFQIKAYKNHIVIIDGFMI----YNYK-----P-------QVDLFDRIIMLTLDYETCK  142 (225)
T ss_pred             ccchHhhhhhhhhH-HHHHhhhcCcccccCcEEEEecceE----Eecc-----h-------hhhhhhhheeeeccHHHHH
Confidence            11111111111111 1110 00011111235788888754    3321     1       1125688999999999999


Q ss_pred             hhcCCCCC-------Ccch---HHHHHHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          190 ERGGYGGE-------RYEH---LEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       190 ~R~~~R~d-------~~e~---~~~~~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      +|-..|..       -++.   ..|.+.. +.+.........-+|++.+-+..-..|.+.+.
T Consensus       143 rRr~~Rt~y~p~~tgyfd~~~~P~Y~~~~-~~~~d~~~h~~~flngdvs~e~~~~~v~~~i~  203 (225)
T KOG3308|consen  143 RRREARTYYPPDDTGYFDPVVWPHYEKNF-EEARDRSRHDSLFLNGDVSEEKLDDKVNESIN  203 (225)
T ss_pred             HhhcccccCCCCCCccccCccchHHHHHH-HHHHhhcccceeeecccchhhhchhhhhhhhc
Confidence            99877621       1122   1222221 12222222245677877777777777766663

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.21  E-value=9.7e-06  Score=69.95  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=28.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHS   85 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~   85 (259)
                      .++.+|.|.|++||||||+++.|+..+...+-.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~   63 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL   63 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence            467899999999999999999999999875443

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.18  E-value=3.3e-05  Score=66.01  Aligned_cols=30  Identities=20%  Similarity=0.189  Sum_probs=27.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      .++.+|.|.|++||||||+++.|.+.|+..
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~   35 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE   35 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence            356899999999999999999999999754

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.16  E-value=3.1e-06  Score=65.09  Aligned_cols=30  Identities=23%  Similarity=0.397  Sum_probs=25.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      +|+|.|++||||||+|+.|++++   |+.++..
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~---~~~~i~~   30 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL---GFPVISM   30 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH---TCEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH---CCeEEEe
Confidence            58999999999999999999999   4555543

...

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.16  E-value=4.7e-06  Score=69.95  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +|.|.|++||||||+|+.|++.+.
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~   24 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP   24 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999999984

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK05439 pantothenate kinase; Provisional

Probab=98.12  E-value=1.6e-05  Score=71.77  Aligned_cols=39  Identities=21%  Similarity=0.209  Sum_probs=31.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhC--CCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGL--GHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~--g~~v~~~~   90 (259)
                      ..++.+|.|.|++||||||+|+.|++.+...  +..+..+.
T Consensus        83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~  123 (311)
T PRK05439         83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVT  123 (311)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence            4567899999999999999999999988653  44554443

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.11  E-value=3.7e-05  Score=67.79  Aligned_cols=34  Identities=12%  Similarity=0.152  Sum_probs=29.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +|+|.|.+||||||+++.|.+.|...|..+..+.
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~   34 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVE   34 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence            5899999999999999999999988777655443

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=98.10  E-value=8.9e-05  Score=65.75  Aligned_cols=69  Identities=20%  Similarity=0.191  Sum_probs=40.2

Q ss_pred             CCCCEEEEEeCCHHHHHhhcCC--CCCCcc----hHHHHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHH
Q 025041          173 LAPDSVLYLDIPPEKAAERGGY--GGERYE----HLEFQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVL  241 (259)
Q Consensus       173 ~~PdlvI~Ld~~~e~~~~R~~~--R~d~~e----~~~~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~  241 (259)
                      ...--++||+++.+++.+|-..  |.....    ..+-.++-++....+.+..-++|||+ .++.+..+.|.+.+.
T Consensus        80 ~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~vIDTs~l~~~~Lr~~i~~~~~  155 (284)
T PF03668_consen   80 GIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADLVIDTSNLSVHQLRERIRERFG  155 (284)
T ss_pred             CCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHhc
Confidence            3345799999999999999863  221111    11222222222333333233899985 788877777776543

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=98.10  E-value=0.00016  Score=65.82  Aligned_cols=152  Identities=13%  Similarity=0.157  Sum_probs=77.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHH-HHHHHHHhHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT-IHLLFSANRWEKRSMME  133 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~-~~ll~~a~r~~~~~~i~  133 (259)
                      +..|+|.|++|+||||+++.|+..++.   .+  +.++.     -+.+++.......+...- ..+..     .+.....
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~---~~--v~E~~-----R~~~~~~~~~~~~l~~~d~~~i~~-----g~~~~~~  226 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNT---TS--AWEYA-----REYVEEKLGGDEALQYSDYAQIAL-----GQQRYID  226 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCC---CE--Eeehh-----HHHHHHhcCCCcccCHHHHHHHHH-----HHHHHHH
Confidence            678999999999999999999998853   33  22222     122333221121221110 01110     0110111


Q ss_pred             HHH-hcCCeEEEcccccchhhhhcC-CCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc--hHHHHHHHH
Q 025041          134 AKL-KAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE--HLEFQRKVA  209 (259)
Q Consensus       134 ~~l-~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e--~~~~~~rv~  209 (259)
                      .++ ....+|++|+...++.+|... .|-...++...... ...|++++++.+.+  ..-=..|....+  ...+++.+.
T Consensus       227 ~~~~~a~~iif~D~~~~~t~~y~~~~~~~~~~~~~~~~~~-~~ydl~~l~~p~~~--~~~D~~R~~~~~~~R~~~~~ll~  303 (325)
T TIGR01526       227 YAVRHAHKIAFIDTDFITTQVFAKQYEGREHPFLDSDIAE-YPFDLTLLLKPNTE--WVDDGLRSLGSQKQRQEFQQLLK  303 (325)
T ss_pred             HHHhhcCCeEEEcCChHHHHHHHHHHcCCCCHHHHHHHHh-cCCCEEEECCCCCC--CccCCcccCchHHHHHHHHHHHH
Confidence            222 235699999999999988652 22222333322222 45677777766544  322222322221  124555555


Q ss_pred             HHHHhhhCCCeEEEcC
Q 025041          210 QCYQMLRDSSWKIIDA  225 (259)
Q Consensus       210 ~~y~~l~~~~~~vIDa  225 (259)
                      +.|.+. ...+++|..
T Consensus       304 ~~l~~~-G~~~v~Vtg  318 (325)
T TIGR01526       304 KLLDEY-GVPFVVIES  318 (325)
T ss_pred             HHHHHc-CCcEEEEeC
Confidence            556543 246677754

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=98.09  E-value=2.3e-06  Score=68.15  Aligned_cols=25  Identities=36%  Similarity=0.555  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +|+|.||+||||||+++.|.+.+..
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~   25 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDP   25 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCc
Confidence            5899999999999999999998753

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PHA03133 thymidine kinase; Provisional

Probab=98.06  E-value=0.00025  Score=64.64  Aligned_cols=160  Identities=16%  Similarity=0.200  Sum_probs=89.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC-C-CChH-HHHHHHHHhC-----CCCCCHHHH-------H
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD-R-TTSV-GQMISAYLSN-----QSHLDDHTI-------H  118 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~-~-~~~~-g~~ir~~l~~-----~~~~~~~~~-------~  118 (259)
                      .-..|.|+|+.|.||||.++.+.+.+... -.++.+.||= + ...+ .+.|..++..     .++++....       +
T Consensus        39 ~~~rvYlDG~~GvGKTTt~~~l~~a~~~~-~~vl~~pEPM~YWr~~f~sd~i~~IY~tq~r~~~GeiS~~~A~~~~~s~Q  117 (368)
T PHA03133         39 ALLRIYVDGPHGLGKTTTAAALAAALGRR-DDIEYVPEPMAYWQVLGGSETIARIFDAQHRLDRGEISAGEAAVAMTSAQ  117 (368)
T ss_pred             eEEEEEEeCCCcCCHHHHHHHHHHhhCCC-CCeEEecCcHHHHHHHhhhhHHHHHHHHHHHHhccCcchhhhhhHHHHHH
Confidence            34679999999999999999998887543 2367777762 0 0111 2445554431     233332211       1


Q ss_pred             HHHHHhHHHHH-HHHHHHHh---------c---CCeEEEcccccchh-hhhcC---CC-CCHHHHHhhhccCC---CCCE
Q 025041          119 LLFSANRWEKR-SMMEAKLK---------A---GTTLIVDRYSYSGV-AFSSA---KG-IDIEWCKAPEIGLL---APDS  177 (259)
Q Consensus       119 ll~~a~r~~~~-~~i~~~l~---------~---g~~VI~DR~~~s~~-ay~~~---~g-l~~~~~~~~~~~~~---~Pdl  177 (259)
                      +.|+.= +... ..+.+.+.         .   ..++|+||.+.+.. +|-.+   .| +..+-+..+...++   .-+-
T Consensus       118 ~kFatP-y~~~~~~~~~~~g~~~~~~~~~~p~~d~~lifDRHPlAa~vcFPlary~~G~ls~~~lislla~lp~~~pG~N  196 (368)
T PHA03133        118 VTMSTP-YAVTEAAVAPHIGGELPPGHAPHPNIDLTLVFDRHPVAPLLCYPAARYLMGSLSLPAVLSFAALLPPTTPGTN  196 (368)
T ss_pred             HHhcCh-HHHHHHHHHHHhccCCCCCCCCCCCCCeEEeecCCcCchhhhhhHHHHHcCCCCHHHHHHHHHhCCCCCCCCE
Confidence            111110 0001 12222221         1   36899999998653 34322   12 33333333333343   2368


Q ss_pred             EEEEeCCHHHHHhhcCCCCCCcc--hHHHHHHHHHHHHhh
Q 025041          178 VLYLDIPPEKAAERGGYGGERYE--HLEFQRKVAQCYQML  215 (259)
Q Consensus       178 vI~Ld~~~e~~~~R~~~R~d~~e--~~~~~~rv~~~y~~l  215 (259)
                      +|+++.|+++-.+|+..|....|  +..++..++..|.-+
T Consensus       197 iVl~~L~~~E~~~RL~~R~R~gE~~D~~~l~alrnvY~~l  236 (368)
T PHA03133        197 LVLGALPEAAHAERLAQRQRPGERLDLAMLSAIRRVYDML  236 (368)
T ss_pred             EEEEeCCHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Confidence            99999999999999988754444  245666666666443

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.99  E-value=4.5e-05  Score=64.32  Aligned_cols=127  Identities=15%  Similarity=0.188  Sum_probs=57.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCC--CChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDR--TTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~--~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      .++.+|++-|++||||||++..+.+.+...++  +.++....  ..+....+..  ..+..........   +.++ ...
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~--v~i~~D~~r~~~p~~~~~~~--~~~~~~~~~~~~~---a~~~-~~~   84 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGI--VVIDADEFRQFHPDYDELLK--ADPDEASELTQKE---ASRL-AEK   84 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-S--EEE-GGGGGGGSTTHHHHHH--HHCCCTHHHHHHH---HHHH-HHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCe--EEEehHHHHHhccchhhhhh--hhhhhhHHHHHHH---HHHH-HHH
Confidence            57899999999999999999999998852233  22221100  0011111111  1111121111110   1111 112


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG  195 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R  195 (259)
                      .+..++.++..+|+|.-..+.-.+       .+.++.+.. ....-.++++.+|+++.+.|+..|
T Consensus        85 ~~~~a~~~~~nii~E~tl~~~~~~-------~~~~~~~k~-~GY~v~l~~v~~~~e~s~~rv~~R  141 (199)
T PF06414_consen   85 LIEYAIENRYNIIFEGTLSNPSKL-------RKLIREAKA-AGYKVELYYVAVPPELSIERVRQR  141 (199)
T ss_dssp             HHHHHHHCT--EEEE--TTSSHHH-------HHHHHHHHC-TT-EEEEEEE---HHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEecCCCChhHH-------HHHHHHHHc-CCceEEEEEEECCHHHHHHHHHHH
Confidence            345667788889998654321111       112333332 233456888999999999887543

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.90  E-value=5.5e-05  Score=67.70  Aligned_cols=30  Identities=17%  Similarity=0.221  Sum_probs=26.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..++.+|.|.|++||||||+++.|...+..
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~   88 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSR   88 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            356789999999999999999999888863

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=97.87  E-value=0.00072  Score=58.92  Aligned_cols=30  Identities=20%  Similarity=0.309  Sum_probs=27.4

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+.++.+|.|-|++|.||||+|..|+.+|+
T Consensus        85 ~~~~p~IILIGGasGVGkStIA~ElA~rLg  114 (299)
T COG2074          85 KMKRPLIILIGGASGVGKSTIAGELARRLG  114 (299)
T ss_pred             ccCCCeEEEecCCCCCChhHHHHHHHHHcC
Confidence            456789999999999999999999999995

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=97.78  E-value=0.002  Score=55.50  Aligned_cols=121  Identities=19%  Similarity=0.174  Sum_probs=62.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC---CCC---HHHHHHHHHHhHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS---HLD---DHTIHLLFSANRWE  127 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~---~~~---~~~~~ll~~a~r~~  127 (259)
                      ...+|++.|+|+.|||++++.|..+|.+.|+.+..++       .|+.-|+......   -++   ..+..+--... ..
T Consensus        11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn-------~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a-~~   82 (222)
T PF01591_consen   11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFN-------VGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA-KE   82 (222)
T ss_dssp             --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE-------HHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH-HH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceee-------cccceecccccccccccCCCCChHHHHHHHHHH-HH
Confidence            3467889999999999999999999999999888765       3555555543311   111   22111110000 01


Q ss_pred             HHHHHHHHHh--cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeC---CHHHHHhhc
Q 025041          128 KRSMMEAKLK--AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDI---PPEKAAERG  192 (259)
Q Consensus       128 ~~~~i~~~l~--~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~---~~e~~~~R~  192 (259)
                      .++.+...+.  .|++-|+|.--- +....       .++........  .-++|+..   |++++.+.+
T Consensus        83 ~l~dl~~~l~~~~G~VAI~DATN~-T~~RR-------~~l~~~~~~~~--~~vlFIEsic~D~~ii~~NI  142 (222)
T PF01591_consen   83 ALEDLIEWLQEEGGQVAIFDATNS-TRERR-------KMLVERFKEHG--IKVLFIESICDDPEIIERNI  142 (222)
T ss_dssp             HHHHHHHHHHTS--SEEEEES----SHHHH-------HHHHHHHHHTT---EEEEEEEE---HHHHHHHH
T ss_pred             HHHHHHHHHhcCCCeEEEEeCCCC-CHHHH-------HHHHHHHHHcC--CcEEEEEEEeCCHHHHHHHH
Confidence            1233444454  578999996432 22221       34433222222  46777776   777776554

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.76  E-value=2.6e-05  Score=65.47  Aligned_cols=29  Identities=28%  Similarity=0.409  Sum_probs=27.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCe
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHS   85 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~   85 (259)
                      +|.|.|++||||||+|+.|+..|+..|..
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~   29 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence            68999999999999999999999987776

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE

Probab=97.76  E-value=0.00065  Score=60.14  Aligned_cols=152  Identities=20%  Similarity=0.236  Sum_probs=76.7

Q ss_pred             cCCCCCHHHHHHHHHHHHhhCCCeEEEEecC------CCCChHHHHHHHHH--hCCCCCCHH-HH------HHHHHHhHH
Q 025041           62 GLDRCGKTSQCSRLLSYLEGLGHSVELWRFP------DRTTSVGQMISAYL--SNQSHLDDH-TI------HLLFSANRW  126 (259)
Q Consensus        62 G~dGSGKSTla~~L~~~l~~~g~~v~~~~~p------~~~~~~g~~ir~~l--~~~~~~~~~-~~------~ll~~a~r~  126 (259)
                      |+.|.||||.++.|++.... |-.+..+.||      .+++..-+.|.+.-  ...++.+.. +.      +..|+. -+
T Consensus         1 G~~GvGKTT~~~~l~~~~~~-~~~vl~~pEPM~YWr~~f~~d~i~~Iy~~~~r~~~G~~s~~~as~~~~~~Q~~fat-P~   78 (281)
T PF00693_consen    1 GAMGVGKTTTLKALAEALPA-GDPVLYFPEPMAYWRTVFGTDVIKGIYEAQKRKDRGEISSEEASAIMASCQMKFAT-PY   78 (281)
T ss_dssp             SSTTSSHHHHHHHHHHCCTS-SCCEEEE---HHHHHTCSSSSHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHH-HH
T ss_pred             CCCCcCHHHHHHHHHHccCC-CCCeEEecccHHHHHHHhhHHHHHHHHHHHhHhhccCcCccHHHHHHHHHHHHhcc-hH
Confidence            89999999999999997753 3456767776      12222222222211  122345421 11      111211 01


Q ss_pred             HHH-HHHHHHH----------hcCCeEEEcccccchh-hhhcC---CC-CCHHHHHhhhccCC---CCCEEEEEeCCHHH
Q 025041          127 EKR-SMMEAKL----------KAGTTLIVDRYSYSGV-AFSSA---KG-IDIEWCKAPEIGLL---APDSVLYLDIPPEK  187 (259)
Q Consensus       127 ~~~-~~i~~~l----------~~g~~VI~DR~~~s~~-ay~~~---~g-l~~~~~~~~~~~~~---~PdlvI~Ld~~~e~  187 (259)
                      ... ..+.+.+          .-..++|+||++.+.. +|-.+   .| +..+-+..+...++   ..+.+|.++.|+++
T Consensus        79 ~~~~~~i~~~~~~~~~~~~~~~pd~~~ifDRHplAA~vcFPlary~~G~ls~~~li~lla~~p~~~pG~niVl~~L~~~E  158 (281)
T PF00693_consen   79 LALHARISRLCGPEAVPPAGPSPDVWLIFDRHPLAATVCFPLARYLLGDLSFEDLISLLATFPPEPPGTNIVLMTLPEEE  158 (281)
T ss_dssp             HHHHHHHCCTSEEEEECTTSSS-SEEEEEES-THHHHTHHHHHHHHTTSS-HHHHHHHHTTS----TTEEEEEEE--HHH
T ss_pred             HHHHHHHHHhcCCccCCCCCCCCCeEEEEecchhHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCEEEEEeCCHHH
Confidence            111 1111111          0135899999998654 34222   12 33333334444443   23578899999999


Q ss_pred             HHhhcCCCCCCcc--hHHHHHHHHHHHHhh
Q 025041          188 AAERGGYGGERYE--HLEFQRKVAQCYQML  215 (259)
Q Consensus       188 ~~~R~~~R~d~~e--~~~~~~rv~~~y~~l  215 (259)
                      ..+|+..|+...|  +..|+..++..|.-+
T Consensus       159 ~~rRl~~R~R~gE~vd~~~l~~Lr~~Y~~l  188 (281)
T PF00693_consen  159 HLRRLKARGRPGERVDLNYLRALRNVYHAL  188 (281)
T ss_dssp             HHHHHHHTSTTT-S--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCccccCHHHHHHHHHHHHHH
Confidence            9999987754444  467888888888654

The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=97.74  E-value=0.00085  Score=54.58  Aligned_cols=184  Identities=16%  Similarity=0.171  Sum_probs=95.2

Q ss_pred             cccccccCcccccCCCCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE----EEecCCC--CChHHHHHHH-HHhC
Q 025041           36 TPFRMESSSSLRIGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE----LWRFPDR--TTSVGQMISA-YLSN  108 (259)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~----~~~~p~~--~~~~g~~ir~-~l~~  108 (259)
                      +..||--.+...++  +.+|++|.+-|.+.||||+++..+.+-...-...+-    ...-|..  ....|-.... ...+
T Consensus         6 r~rr~~~~~~~~ag--~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~d   83 (205)
T COG3896           6 RARRMRYRLAAMAG--MPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEAD   83 (205)
T ss_pred             HHHHHHHHHHHHcC--CCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccC
Confidence            33455554442233  579999999999999999999999886653211110    0001100  0000000000 0000


Q ss_pred             CCCCCH-HHHHHH--HHHhHHHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCC
Q 025041          109 QSHLDD-HTIHLL--FSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIP  184 (259)
Q Consensus       109 ~~~~~~-~~~~ll--~~a~r~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~  184 (259)
                      +..+.+ ..-.++  .+..+.   ..+.....+|..||.|-+...           .+|+-. +.....-|...|-+.+|
T Consensus        84 g~~~v~v~~gpi~e~~~~~~r---~ai~a~ad~G~~~i~Ddv~~~-----------r~~L~Dc~r~l~g~~v~~VGV~~p  149 (205)
T COG3896          84 GLEWVTVHPGPILELAMHSRR---RAIRAYADNGMNVIADDVIWT-----------REWLVDCLRVLEGCRVWMVGVHVP  149 (205)
T ss_pred             CceeeEeechhHHHHHHHHHH---HHHHHHhccCcceeehhcccc-----------hhhHHHHHHHHhCCceEEEEeecc
Confidence            000100 000111  111111   234444567989999976653           123211 11223457789999999


Q ss_pred             HHHHHhhcCCCCCCcchHHHHHHHHHHHHhh-hCCC-eEEEcCC-CCHHHHHHHHHHHH
Q 025041          185 PEKAAERGGYGGERYEHLEFQRKVAQCYQML-RDSS-WKIIDAC-QSIEDVEKQLKEIV  240 (259)
Q Consensus       185 ~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l-~~~~-~~vIDa~-~s~eev~~~I~~~i  240 (259)
                      .|+..+|-..|+++...  +.   .-.|+.. ++.. -..+||+ .+|.|.+..|.+..
T Consensus       150 ~E~~~~Re~rr~dR~pG--~~---rg~~r~vHa~~~YDlevDTS~~tp~EcAr~i~~r~  203 (205)
T COG3896         150 DEEGARRELRRGDRHPG--WN---RGSARAVHADAEYDLEVDTSATTPHECAREIHERY  203 (205)
T ss_pred             HHHHHHHHhhcCCcCcc--hh---hhhHHHhcCCcceeeeecccCCCHHHHHHHHHHHh
Confidence            99999887767776432  11   1133332 1222 2678987 58999999988764

>PLN02348 phosphoribulokinase

Probab=97.74  E-value=0.0002  Score=66.44  Aligned_cols=30  Identities=27%  Similarity=0.399  Sum_probs=27.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      .++.+|.|.|++||||||+++.|++.|+..
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~   76 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGA   76 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            567899999999999999999999999753

>PRK15453 phosphoribulokinase; Provisional

Probab=97.73  E-value=5.4e-05  Score=67.27  Aligned_cols=37  Identities=8%  Similarity=0.147  Sum_probs=31.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      .++++|+|.|.+||||||+++.|++.|...+..+..+
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi   39 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVV   39 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEE
Confidence            5789999999999999999999999998766655443

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.72  E-value=5.1e-05  Score=61.76  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=30.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE   87 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~   87 (259)
                      ..+-|.|+|+||+||||++..+++.|...|+.+-
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg   37 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG   37 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence            3567999999999999999999999999988874

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.66  E-value=6.5e-05  Score=62.50  Aligned_cols=33  Identities=24%  Similarity=0.238  Sum_probs=28.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      +|.|.|++||||||+++.|++.+...|..+..+
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i   33 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVI   33 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            589999999999999999999998777766544

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.59  E-value=0.00034  Score=66.09  Aligned_cols=39  Identities=28%  Similarity=0.422  Sum_probs=34.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .++.+|.|.|+.|+||||.+..|+.+|...|+++.++..
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~  131 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA  131 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence            467899999999999999999999999988888876543

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.58  E-value=0.00014  Score=60.24  Aligned_cols=37  Identities=22%  Similarity=0.224  Sum_probs=31.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      .+.++|.|.|++||||||+++.|...|...|+.+-.+
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~I   40 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLI   40 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEE
Confidence            3567999999999999999999999998888876443

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=97.54  E-value=0.00022  Score=62.81  Aligned_cols=34  Identities=21%  Similarity=0.257  Sum_probs=29.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHS   85 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~   85 (259)
                      ...+.+|.+.|++|+||||+++.|+..+...+-+
T Consensus        79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~  112 (283)
T COG1072          79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPES  112 (283)
T ss_pred             CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence            3567889999999999999999999999876544

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.53  E-value=0.00031  Score=59.38  Aligned_cols=36  Identities=28%  Similarity=0.357  Sum_probs=30.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      |.+|+|.||.|+||||.+.+|+.++...|.++-.+.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis   36 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS   36 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence            578999999999999999999999987788876554

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.52  E-value=0.00079  Score=57.78  Aligned_cols=174  Identities=18%  Similarity=0.246  Sum_probs=89.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEE-EecCCCCChHH--------HHHHHHHhCCCCCCHHHHHHHHHHh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVEL-WRFPDRTTSVG--------QMISAYLSNQSHLDDHTIHLLFSAN  124 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~-~~~p~~~~~~g--------~~ir~~l~~~~~~~~~~~~ll~~a~  124 (259)
                      .+-|++.||.|+||+|+..+|.+++.. .++.|.. ++.|..+..-|        +....+..+.    ...+...+..+
T Consensus        37 ~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~----~fiE~a~~~gn  112 (231)
T KOG0707|consen   37 FKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNN----EFIEFATFSGN  112 (231)
T ss_pred             CceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhh----hhhhhhhhhcc
Confidence            367999999999999999999999986 4555543 23332110000        0000000000    00111111111


Q ss_pred             HHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCC-EEEEEeC-CHHHHHhhcCCCCCCcch
Q 025041          125 RWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPD-SVLYLDI-PPEKAAERGGYGGERYEH  201 (259)
Q Consensus       125 r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~Pd-lvI~Ld~-~~e~~~~R~~~R~d~~e~  201 (259)
                      .+.. ...++.....|...|.|      +-+++...          .....+| +.+|+.. +-..+.+|+..|+-..+ 
T Consensus       113 ~yGtsi~av~~~~~~gk~~ild------Id~qg~~~----------i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~-  175 (231)
T KOG0707|consen  113 KYGTSIAAVQRLMLSGKVCILD------IDLQGVQP----------IRATSLDAIYIFIKPPSIKILEERLRARGTETE-  175 (231)
T ss_pred             cCCchHHHHHHHHhcCCcceee------hhhcCcee----------eecCCCceEEEEecCCcchhHHHHhhccCcchH-
Confidence            1111 12334444556666665      22222110          0111344 4555553 44456788887754332 


Q ss_pred             HHHHHHHHHHHHhhh---C-C-CeEEEcCCCCHHHHHHHHHHHHHHHHhhhhc
Q 025041          202 LEFQRKVAQCYQMLR---D-S-SWKIIDACQSIEDVEKQLKEIVLDQVTACKK  249 (259)
Q Consensus       202 ~~~~~rv~~~y~~l~---~-~-~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~  249 (259)
                      .+.++++..+..+..   + . --.+|.++..+|++.+++...+.......+.
T Consensus       176 ~~l~~r~~sa~~e~~~~~~~g~~d~~~~ns~~lee~~kel~~~~~~~~~~~~~  228 (231)
T KOG0707|consen  176 ESLLKRLKSAEEEFEILENSGSFDLVIVNSDRLEEAYKELEIFISSDDKESHQ  228 (231)
T ss_pred             HHHHHHHHhhhhhhccccCCccccceecCCCchhhhhhhhhhhhhHHHHhhhh
Confidence            356677766666542   2 1 1234444488999999999888766655543

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=97.52  E-value=0.00016  Score=59.12  Aligned_cols=36  Identities=22%  Similarity=0.309  Sum_probs=32.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+++.|.|+.+|||||+++.|.+.|.++|+.|-.+.
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK   37 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK   37 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence            478999999999999999999999999999886544

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.51  E-value=0.00022  Score=63.45  Aligned_cols=54  Identities=20%  Similarity=0.256  Sum_probs=41.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-cC---C-CCChHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-FP---D-RTTSVGQMISAY  105 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-~p---~-~~~~~g~~ir~~  105 (259)
                      ..+..+|.|+|+||+||||++..|..+|...|+.|-.+. .|   . .++-+|+.+|.-
T Consensus        48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~  106 (323)
T COG1703          48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQ  106 (323)
T ss_pred             CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHH
Confidence            456789999999999999999999999999999874432 22   2 234568887653

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.0012  Score=60.65  Aligned_cols=38  Identities=29%  Similarity=0.554  Sum_probs=33.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++.+|.|.|.-|+||||.|..|+-+|..+|+++-++.
T Consensus        99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvc  136 (483)
T KOG0780|consen   99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVC  136 (483)
T ss_pred             CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEe
Confidence            35689999999999999999999999999999986543

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.47  E-value=0.0004  Score=59.88  Aligned_cols=33  Identities=24%  Similarity=0.508  Sum_probs=28.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      -+|.|||||||||-|....+-|.+.|.++..++
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVN   37 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVN   37 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHHHHhCCceEEEe
Confidence            367899999999999999999999898776554

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.45  E-value=0.00015  Score=55.43  Aligned_cols=34  Identities=26%  Similarity=0.338  Sum_probs=28.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL   88 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~   88 (259)
                      +..+.|.|++|+||||++..|+..+...+..+..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~   35 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIY   35 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEE
Confidence            5679999999999999999999999775433443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.44  E-value=0.00045  Score=56.61  Aligned_cols=35  Identities=34%  Similarity=0.518  Sum_probs=30.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      +|+|.|++|+||||++..++..+...|..+..+..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~   36 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAA   36 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Confidence            68899999999999999999999888888766553

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.43  E-value=0.00018  Score=63.06  Aligned_cols=52  Identities=21%  Similarity=0.289  Sum_probs=33.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-c---CCC-CChHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-F---PDR-TTSVGQMISA  104 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-~---p~~-~~~~g~~ir~  104 (259)
                      .+..+|.|+|+||+||||+++.|...|...|.+|-.+. .   |.. +.-+|+.+|.
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM   83 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRM   83 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGC
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHh
Confidence            46789999999999999999999999998888874332 2   222 3345777764

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.43  E-value=0.00025  Score=56.73  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=28.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      ++|.|.|+.+|||||+++.|..+|..+|+.+..+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i   34 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI   34 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence            4789999999999999999999999999987643

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.43  E-value=0.00074  Score=60.25  Aligned_cols=38  Identities=26%  Similarity=0.378  Sum_probs=31.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC-C-CeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL-G-HSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g-~~v~~~~   90 (259)
                      .++.+|+|.||.|+||||.+..|+.++... | .+|..+.
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~  231 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT  231 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            367899999999999999999999998754 4 7776554

>PRK14974 cell division protein FtsY; Provisional

Probab=97.38  E-value=0.00048  Score=62.97  Aligned_cols=38  Identities=29%  Similarity=0.476  Sum_probs=33.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++.+|+|.|++|+||||++..|+..|...|+++....
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~  175 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA  175 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence            35789999999999999999999999988888876543

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=97.38  E-value=0.00028  Score=57.40  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=30.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +|+|.|+.||||||++..|.+.+..+|+++-.+.
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK   34 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIK   34 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            4789999999999999999999998899886554

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.35  E-value=0.00027  Score=60.82  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhh--CCCeEEEE
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEG--LGHSVELW   89 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~--~g~~v~~~   89 (259)
                      +|.|.|++||||||+++.|...+..  .+..+..+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi   35 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELI   35 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEE
Confidence            5889999999999999999999964  33444443

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.33  E-value=0.00036  Score=53.80  Aligned_cols=30  Identities=27%  Similarity=0.336  Sum_probs=25.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      |.|.||+|+||||+++.+++.++   .++..+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~   30 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG---FPFIEID   30 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT---SEEEEEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc---ccccccc
Confidence            67999999999999999999984   5555544

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.32  E-value=0.00042  Score=63.21  Aligned_cols=38  Identities=21%  Similarity=0.240  Sum_probs=33.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++.+|.|.|++||||||+++.|...+...|.++..+.
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~   91 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA   91 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            46789999999999999999999999998888876543

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.30  E-value=0.0063  Score=56.90  Aligned_cols=39  Identities=28%  Similarity=0.477  Sum_probs=34.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..++.+|.+.|.=||||||.|..|+.+|..+|+++-.+.
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVa  135 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVA  135 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEe
Confidence            346789999999999999999999999999999887654

>PRK13768 GTPase; Provisional

Probab=97.30  E-value=0.00039  Score=61.05  Aligned_cols=36  Identities=28%  Similarity=0.331  Sum_probs=31.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++|+|.|++|+||||++..++..+...|.++..+.
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~   37 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVN   37 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence            468999999999999999999999988898877653

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.30  E-value=0.00046  Score=56.41  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++|.|.|++||||||+++.|...|...|+.+-.+.
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK   36 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIK   36 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            47999999999999999999999998888765443

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=97.28  E-value=0.0071  Score=52.97  Aligned_cols=66  Identities=21%  Similarity=0.263  Sum_probs=39.0

Q ss_pred             EEEEEeCCHHHHHhhcCC-C-CCCcc--h--HHHHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 025041          177 SVLYLDIPPEKAAERGGY-G-GERYE--H--LEFQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD  242 (259)
Q Consensus       177 lvI~Ld~~~e~~~~R~~~-R-~d~~e--~--~~~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~  242 (259)
                      -++||+++.+++.+|-.. | .....  .  .+-..+-++....+.+..-++|||+ .++.+.-+.|.+.+..
T Consensus        85 ~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vIDTs~ls~~~Lr~~i~~~f~~  157 (286)
T COG1660          85 RVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVIDTSELSVHELRERIRTRFLG  157 (286)
T ss_pred             eEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEeecccCCHHHHHHHHHHHHcc
Confidence            589999999999999863 2 11111  1  1111111121212222223789975 8999888888877654

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.26  E-value=0.001  Score=59.08  Aligned_cols=38  Identities=26%  Similarity=0.427  Sum_probs=33.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++.+|+|.|++|+||||.+..|+..+...|.+|..+.
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~  107 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA  107 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence            45789999999999999999999999988888886654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.25  E-value=0.00033  Score=57.74  Aligned_cols=29  Identities=24%  Similarity=0.399  Sum_probs=24.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhCCCeE
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSV   86 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~~g~~v   86 (259)
                      |.|+|.+|+||||++..+.+.+...|+++
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v   30 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELKKKGLPV   30 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred             EEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence            78999999999999999999997766654

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.25  E-value=0.00089  Score=60.78  Aligned_cols=38  Identities=21%  Similarity=0.345  Sum_probs=33.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+|.+|+|.||+|+||||++..|+..+...|.+|....
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~  149 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA  149 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence            46889999999999999999999999988888887654

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.25  E-value=0.00054  Score=49.54  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=29.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +|++.|..|+||||++..|+..|...|+++..++
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            4788999999999999999999988888876543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.24  E-value=0.00034  Score=60.93  Aligned_cols=31  Identities=32%  Similarity=0.475  Sum_probs=25.6

Q ss_pred             EEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           60 LEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        60 ieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      |.||.||||||.+..+.+++...|.++..++
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vN   31 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVN   31 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEE
Confidence            5799999999999999999999888887665

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF13245 AAA_19: Part of AAA domain

Probab=97.23  E-value=0.00066  Score=48.49  Aligned_cols=26  Identities=27%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      .+.+.+|.|++||||||++..+..++
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~l   34 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAEL   34 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            46788899999999995554444444

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.23  E-value=0.0018  Score=58.55  Aligned_cols=39  Identities=28%  Similarity=0.493  Sum_probs=35.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..++.+|.|.|..|+||||-+..|+.+|...|++|....
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA  174 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAA  174 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEe
Confidence            356899999999999999999999999999999998643

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=97.22  E-value=0.00057  Score=63.25  Aligned_cols=37  Identities=22%  Similarity=0.254  Sum_probs=32.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+|.+|+|.|++||||||+++.|.+.|... ++|..+.
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik   39 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYK   39 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEE
Confidence            579999999999999999999999999987 7776544

>PRK07429 phosphoribulokinase; Provisional

Probab=97.17  E-value=0.00057  Score=62.25  Aligned_cols=37  Identities=27%  Similarity=0.241  Sum_probs=29.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL   88 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~   88 (259)
                      ..+..+|.|.|++||||||+++.|++.++..+..++.
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~   41 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVIC   41 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEE
Confidence            3467899999999999999999999998755433443

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.14  E-value=0.00086  Score=51.75  Aligned_cols=37  Identities=19%  Similarity=0.117  Sum_probs=30.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+..+.|.|++|+||||+++.+...+...+..+..+.
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~   54 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN   54 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence            4678999999999999999999999865555565544

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=97.14  E-value=0.0051  Score=61.28  Aligned_cols=38  Identities=21%  Similarity=0.336  Sum_probs=32.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ....+|++.|.+|+||||+++.|+++|...|+.+..+.
T Consensus       213 ~~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~  250 (664)
T PTZ00322        213 MGSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFI  250 (664)
T ss_pred             ccceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEc
Confidence            34578999999999999999999999998888766554

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.13  E-value=0.00053  Score=53.06  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=27.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhC-----CCeEEEEecC
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL-----GHSVELWRFP   92 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~-----g~~v~~~~~p   92 (259)
                      ++.+++|.|++|+||||+++.+.+.+...     ...+..+..|
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~   46 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCP   46 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeC
Confidence            56789999999999999999999998653     4555555544

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.12  E-value=0.00087  Score=60.27  Aligned_cols=39  Identities=21%  Similarity=0.162  Sum_probs=34.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..++.+|.|.|++||||||++..|...+...|+.+..+.
T Consensus        31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~   69 (300)
T TIGR00750        31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA   69 (300)
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            357899999999999999999999999988888876543

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK04296 thymidine kinase; Provisional

Probab=97.11  E-value=0.00083  Score=56.35  Aligned_cols=36  Identities=19%  Similarity=0.198  Sum_probs=32.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      .|.++++.|++|+||||.+-.++.++...|..+..+
T Consensus         1 ~g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~   36 (190)
T PRK04296          1 MAKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF   36 (190)
T ss_pred             CcEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            378999999999999999999999998788887765

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.09  E-value=0.0014  Score=61.69  Aligned_cols=38  Identities=26%  Similarity=0.499  Sum_probs=33.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++.+|.|.|+.||||||.+..|+..+...|.+|..+.
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~  135 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC  135 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence            35689999999999999999999999988898876654

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.09  E-value=0.00054  Score=54.36  Aligned_cols=30  Identities=33%  Similarity=0.280  Sum_probs=27.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ...|.+|++.|..||||||+++.+++.++.
T Consensus        19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            457889999999999999999999999864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.08  E-value=0.00053  Score=62.96  Aligned_cols=28  Identities=32%  Similarity=0.251  Sum_probs=25.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +.+++.|.||+|+||||+++.|+..++.
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4688999999999999999999999975

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PLN02796 D-glycerate 3-kinase

Probab=97.08  E-value=0.00079  Score=61.52  Aligned_cols=35  Identities=17%  Similarity=0.293  Sum_probs=29.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE   87 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~   87 (259)
                      .++.+|.|.|+.||||||+++.|...+...|..+.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g  132 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAA  132 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCcee
Confidence            46788999999999999999999999976665543

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.03  E-value=0.0019  Score=50.75  Aligned_cols=31  Identities=32%  Similarity=0.367  Sum_probs=25.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      |.+.|++|+|||++++.|++.+   +.++..+.-
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~   32 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL---GRPVIRINC   32 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---hcceEEEEe
Confidence            6789999999999999999999   455554443

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=97.03  E-value=0.00082  Score=62.95  Aligned_cols=48  Identities=21%  Similarity=0.355  Sum_probs=35.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAY  105 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~  105 (259)
                      =|.|.|+||+||||.|+.|++.|..+|.=|..+..|. +-.+++.|-+|
T Consensus       265 GILIAG~PGaGKsTFaqAlAefy~~~GkiVKTmEsPR-Dl~v~~eITQY  312 (604)
T COG1855         265 GILIAGAPGAGKSTFAQALAEFYASQGKIVKTMESPR-DLQVSPEITQY  312 (604)
T ss_pred             ceEEecCCCCChhHHHHHHHHHHHhcCcEEeeccCcc-cccCChhhhhc
Confidence            3667799999999999999999999998555666564 22334444444

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=97.03  E-value=0.0011  Score=57.43  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=31.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++|.|.|++||||||++..|.++|...|++|-.+.
T Consensus         2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK   36 (229)
T PRK14494          2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK   36 (229)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence            47899999999999999999999999999886554

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.00058  Score=61.51  Aligned_cols=26  Identities=38%  Similarity=0.567  Sum_probs=24.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .++|.+.||||+||||+|+.|+++|.
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLS  202 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLS  202 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence            57999999999999999999999995

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=96.97  E-value=0.0013  Score=58.55  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=29.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      ++|.|.|..||||||++..|...|..+| .|-.+
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I   34 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV   34 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE
Confidence            4799999999999999999999999988 66443

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=96.96  E-value=0.0013  Score=61.52  Aligned_cols=37  Identities=16%  Similarity=0.154  Sum_probs=30.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      .++.+|.|.|+.||||||+++.|...+...|+.+..+
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvI  246 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATL  246 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEE
Confidence            4678999999999999999999988887666655444

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.95  E-value=0.0018  Score=54.65  Aligned_cols=37  Identities=30%  Similarity=0.279  Sum_probs=31.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ...+++|.|++|+||||++..+.+.+...|+.++.+.
T Consensus        17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a   53 (196)
T PF13604_consen   17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA   53 (196)
T ss_dssp             TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence            4578999999999999999999999999898887665

>PRK10867 signal recognition particle protein; Provisional

Probab=96.95  E-value=0.0023  Score=60.50  Aligned_cols=38  Identities=26%  Similarity=0.420  Sum_probs=33.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~   90 (259)
                      .++.+|.|.|+.||||||.+..|+.+|... |.+|..+.
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~  136 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVA  136 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            357899999999999999999999999877 88876554

>PF05729 NACHT: NACHT domain

Probab=96.95  E-value=0.00095  Score=53.38  Aligned_cols=28  Identities=18%  Similarity=0.224  Sum_probs=25.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCC
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLG   83 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g   83 (259)
                      ++++|.|.+|+||||++..++..+...+
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~   28 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEE   28 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcC
Confidence            4789999999999999999999997654

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.94  E-value=0.00076  Score=58.15  Aligned_cols=29  Identities=21%  Similarity=0.212  Sum_probs=24.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -.+|-+++|.||+||||||+.+.|.--..
T Consensus        28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            46899999999999999999999965443

>PLN02840 tRNA dimethylallyltransferase

Probab=96.93  E-value=0.00073  Score=63.32  Aligned_cols=30  Identities=23%  Similarity=0.419  Sum_probs=27.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..++++|+|.||+||||||++..|+++++.
T Consensus        18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~   47 (421)
T PLN02840         18 TKKEKVIVISGPTGAGKSRLALELAKRLNG   47 (421)
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHCCC
Confidence            456789999999999999999999999964

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=96.93  E-value=0.0016  Score=60.29  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=32.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +.++|.|.|.+||||||+++.|.+.|..+|+.|-.+.
T Consensus       204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iK  240 (366)
T PRK14489        204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIK  240 (366)
T ss_pred             CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence            4569999999999999999999999999999876544

>PLN02165 adenylate isopentenyltransferase

Probab=96.91  E-value=0.0008  Score=61.23  Aligned_cols=29  Identities=21%  Similarity=0.336  Sum_probs=26.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+|.+|+|.||+||||||++..|++.++.
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~   69 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPS   69 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCC
Confidence            46789999999999999999999999863

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.91  E-value=0.0023  Score=60.06  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=30.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHH-hhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYL-EGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l-~~~g~~v~~~~   90 (259)
                      ++.+|+|.|++||||||++..|+..+ ...|..|....
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit  259 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT  259 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEec
Confidence            56789999999999999999999876 45677776544

>cd03114 ArgK-like The function of this protein family is unkown

Probab=96.91  E-value=0.0016  Score=52.48  Aligned_cols=34  Identities=21%  Similarity=0.405  Sum_probs=29.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +|.+.|+.||||||++..|...+...|.++..+.
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~   34 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLA   34 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            3789999999999999999999988888876543

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.91  E-value=0.0017  Score=54.86  Aligned_cols=36  Identities=22%  Similarity=0.418  Sum_probs=26.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEecC
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWRFP   92 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~~p   92 (259)
                      +|+|.||+||||||++..|...+... +..+.....|
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~   39 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP   39 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence            68999999999999999998888643 3334444333

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=96.90  E-value=0.0015  Score=61.32  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=31.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++|.|.|..||||||+++.|..+|..+|++|-.+.
T Consensus         2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIK   36 (452)
T PRK14495          2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVK   36 (452)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence            48999999999999999999999999999986543

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.89  E-value=0.0039  Score=58.82  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=31.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh--hCCCeEEEEec
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE--GLGHSVELWRF   91 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~--~~g~~v~~~~~   91 (259)
                      +|.+|+|.||.|+||||.+..|+.++.  ..|.+|..+..
T Consensus       220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~  259 (424)
T PRK05703        220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL  259 (424)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence            467999999999999999999999886  45777776553

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.88  E-value=0.0018  Score=51.34  Aligned_cols=35  Identities=23%  Similarity=0.250  Sum_probs=29.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      +++|.|++|+||||++..+...+...|.++.....
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~   35 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI   35 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence            37899999999999999999988777777776554

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.88  E-value=0.00094  Score=59.34  Aligned_cols=32  Identities=25%  Similarity=0.293  Sum_probs=26.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL   88 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~   88 (259)
                      +|.|.|++||||||+++.|...+...+..++.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~   32 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVIC   32 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEE
Confidence            58899999999999999999998765544443

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.87  E-value=0.0083  Score=56.65  Aligned_cols=36  Identities=17%  Similarity=0.311  Sum_probs=32.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL   88 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~   88 (259)
                      .+|.+|+|.|..|.||||-...++=+|-..+++|.+
T Consensus       376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLI  411 (587)
T KOG0781|consen  376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLI  411 (587)
T ss_pred             CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEE
Confidence            478999999999999999999999999888888765

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.85  E-value=0.0055  Score=57.14  Aligned_cols=38  Identities=16%  Similarity=0.231  Sum_probs=30.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh----CCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG----LGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~----~g~~v~~~~   90 (259)
                      .++.+|+|.|+.|+||||.+..|+.++..    .|.+|....
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit  213 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT  213 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence            35679999999999999999999998863    466765543

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.85  E-value=0.0015  Score=63.02  Aligned_cols=37  Identities=32%  Similarity=0.555  Sum_probs=31.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD   93 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~   93 (259)
                      +..++++.||+||||||.++.|++.+   |+.+..+..|.
T Consensus        44 ~~~iLlLtGP~G~GKtttv~~La~el---g~~v~Ew~np~   80 (519)
T PF03215_consen   44 PKRILLLTGPSGCGKTTTVKVLAKEL---GFEVQEWINPV   80 (519)
T ss_pred             CcceEEEECCCCCCHHHHHHHHHHHh---CCeeEEecCCC
Confidence            45699999999999999999999998   56777665553

>cd01394 radB RadB

Probab=96.85  E-value=0.0023  Score=54.47  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=33.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+|.++.|.|++||||||++-.++......|.++.++.
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~   54 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID   54 (218)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            57899999999999999999999998877788877664

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.85  E-value=0.0024  Score=53.91  Aligned_cols=40  Identities=25%  Similarity=0.280  Sum_probs=34.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      -.+|.++.|.|++||||||++..++......|..+.++..
T Consensus         9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~   48 (209)
T TIGR02237         9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT   48 (209)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            3578999999999999999999998887667877776653

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PHA00729 NTP-binding motif containing protein

Probab=96.83  E-value=0.0011  Score=57.28  Aligned_cols=25  Identities=20%  Similarity=0.183  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..|+|.|++|+||||+|..|++++.
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4699999999999999999999875

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=96.83  E-value=0.00098  Score=60.22  Aligned_cols=28  Identities=29%  Similarity=0.444  Sum_probs=25.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ++++|+|.||.||||||++..|++.++.
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~   30 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNG   30 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            5679999999999999999999999864

>PRK06851 hypothetical protein; Provisional

Probab=96.83  E-value=0.0022  Score=59.20  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL   88 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~   88 (259)
                      -.++++|.|++|+||||+++.|.+.+...|+.|..
T Consensus        29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~   63 (367)
T PRK06851         29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEF   63 (367)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            34789999999999999999999999888888753

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=96.82  E-value=0.001  Score=54.93  Aligned_cols=26  Identities=31%  Similarity=0.468  Sum_probs=23.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +++|.|.|++||||||+|..|+..++
T Consensus         1 ~~~ili~G~~~sGKS~~a~~l~~~~~   26 (170)
T PRK05800          1 GMLILVTGGARSGKSRFAERLAAQSG   26 (170)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHcC
Confidence            35799999999999999999998874

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.79  E-value=0.0045  Score=57.46  Aligned_cols=38  Identities=24%  Similarity=0.203  Sum_probs=33.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++.+|+|.||.|+||||++..|+..+...|.+|..+.
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt  241 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT  241 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            46899999999999999999999998877788776544

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.79  E-value=0.0027  Score=54.05  Aligned_cols=38  Identities=18%  Similarity=0.115  Sum_probs=31.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+..|.|.|++|+||||++..+..++...+.++..+.
T Consensus        36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~   73 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP   73 (226)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Confidence            45678999999999999999999998876666666554

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.78  E-value=0.0021  Score=44.06  Aligned_cols=26  Identities=23%  Similarity=0.489  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      .|.+..|.|+.||||||+.+.+.--|
T Consensus        22 ~g~~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   22 RGDVTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999997766

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.78  E-value=0.0041  Score=58.03  Aligned_cols=37  Identities=19%  Similarity=0.241  Sum_probs=32.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++..|+|.|+.|+||||.+..|+..+...|.++..+.
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~  276 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT  276 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence            4678999999999999999999999988888776544

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.78  E-value=0.002  Score=56.68  Aligned_cols=30  Identities=17%  Similarity=0.223  Sum_probs=25.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCC
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLG   83 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g   83 (259)
                      .+.-++|.||+|+||||+|+.+++.+...|
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~   70 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLFKEMN   70 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence            445688999999999999999999886543

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK13695 putative NTPase; Provisional

Probab=96.78  E-value=0.0026  Score=52.31  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=26.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV   86 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v   86 (259)
                      +.|+|.|++|+||||++..+...+...|+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~   31 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKV   31 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            4689999999999999999998887667654

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.77  E-value=0.0023  Score=56.38  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=32.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD   93 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~   93 (259)
                      .+..|+|.|++||||||+...|.+.+......++.+..|.
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~  165 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPP  165 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS
T ss_pred             cceEEEEECCCccccchHHHHHhhhccccccceEEecccc
Confidence            4688999999999999999999998887646666666543

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.75  E-value=0.0014  Score=50.05  Aligned_cols=24  Identities=25%  Similarity=0.239  Sum_probs=22.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLL   76 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~   76 (259)
                      ..|.+++|.|++||||||++..+.
T Consensus        13 ~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          13 YGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHhh
Confidence            468899999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.75  E-value=0.002  Score=52.61  Aligned_cols=31  Identities=29%  Similarity=0.267  Sum_probs=21.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      ...+..++|.|++|+||||+.+.+.+.+...
T Consensus        21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen   21 SGSPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             S-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            3567999999999999999999999999765

>PRK09183 transposase/IS protein; Provisional

Probab=96.75  E-value=0.0026  Score=56.11  Aligned_cols=38  Identities=26%  Similarity=0.166  Sum_probs=31.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+|..++|.||+|+|||+++..|...+...|+.+..+.
T Consensus       100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~  137 (259)
T PRK09183        100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT  137 (259)
T ss_pred             hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            45677889999999999999999888777788876554

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.75  E-value=0.0013  Score=56.26  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=22.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRL   75 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L   75 (259)
                      -.+|-+++|.||+||||||+.+-|
T Consensus        25 v~~Gevv~iiGpSGSGKSTlLRcl   48 (240)
T COG1126          25 VEKGEVVVIIGPSGSGKSTLLRCL   48 (240)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHH
Confidence            468999999999999999999877

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.75  E-value=0.0033  Score=52.78  Aligned_cols=33  Identities=21%  Similarity=0.219  Sum_probs=28.0

Q ss_pred             CCc-cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE
Q 025041           53 SRG-ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV   86 (259)
Q Consensus        53 ~~g-~lIvieG~dGSGKSTla~~L~~~l~~~g~~v   86 (259)
                      +++ ..|-|.||+||||||+...+.+.|..+ |++
T Consensus        10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~   43 (202)
T COG0378          10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKI   43 (202)
T ss_pred             cCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCe
Confidence            355 689999999999999999999999775 543

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.75  E-value=0.0014  Score=54.16  Aligned_cols=28  Identities=21%  Similarity=0.466  Sum_probs=24.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ..+|-.|+|+||+||||||+.+.++.-.
T Consensus        26 v~~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          26 VRAGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence            4689999999999999999999997754

>CHL00181 cbbX CbbX; Provisional

Probab=96.74  E-value=0.0018  Score=57.89  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=27.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCC
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGH   84 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~   84 (259)
                      .+|.-|+|.|++|+||||+|+.+++.+...|+
T Consensus        57 ~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~   88 (287)
T CHL00181         57 NPGLHMSFTGSPGTGKTTVALKMADILYKLGY   88 (287)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            35677999999999999999999999876554

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.68  E-value=0.0074  Score=54.45  Aligned_cols=28  Identities=25%  Similarity=0.430  Sum_probs=26.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +-++|+|.|+.|||||-++-.|+.++++
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~   33 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPG   33 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCc
Confidence            6789999999999999999999999875

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.67  E-value=0.0086  Score=57.80  Aligned_cols=38  Identities=26%  Similarity=0.401  Sum_probs=30.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC--CCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL--GHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~--g~~v~~~~   90 (259)
                      .+|.+|+|.|+.|+||||++..|+..+...  |.++.++.
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId  387 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT  387 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence            468999999999999999999999887543  34555443

>TIGR00959 ffh signal recognition particle protein

Probab=96.67  E-value=0.0054  Score=57.91  Aligned_cols=38  Identities=32%  Similarity=0.568  Sum_probs=32.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh-hCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE-GLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~-~~g~~v~~~~   90 (259)
                      .++.+|.+.|++||||||.+..|+.++. ..|.++..+.
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~  135 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVA  135 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Confidence            3567999999999999999999999986 4688876554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.66  E-value=0.0019  Score=50.52  Aligned_cols=30  Identities=27%  Similarity=0.220  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+.|.+|.+.|.-||||||+++.+++.++.
T Consensus        12 l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~   41 (123)
T PF02367_consen   12 LKPGDVILLSGDLGAGKTTFVRGLARALGI   41 (123)
T ss_dssp             HSS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            357899999999999999999999999854

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.66  E-value=0.0029  Score=55.96  Aligned_cols=39  Identities=21%  Similarity=0.221  Sum_probs=30.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP   92 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p   92 (259)
                      ..-+|+|.|++||||||+...+...+...+..++.+..|
T Consensus        79 ~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp  117 (264)
T cd01129          79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDP  117 (264)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCC
Confidence            345899999999999999999988886545556655544

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.66  E-value=0.022  Score=50.53  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=29.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCC
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGH   84 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~   84 (259)
                      ..++..|++.|.-||||||.+++|..++.+.+-
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~   48 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKT   48 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhccC
Confidence            457889999999999999999999999987643

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=96.62  E-value=0.0042  Score=48.03  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=29.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      |++.|..|+||||++..|+..+...|.++..+.
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id   34 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID   34 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            789999999999999999999988888887654

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=96.61  E-value=0.0043  Score=51.02  Aligned_cols=34  Identities=21%  Similarity=0.066  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++|.|++|+|||+++..+....-..|.++.++.
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s   34 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT   34 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            3789999999999999998777666687777654

A related protein is found in archaea.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=96.61  E-value=0.0027  Score=54.68  Aligned_cols=33  Identities=18%  Similarity=0.158  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP   92 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p   92 (259)
                      =+.|.||||.||||+|..++..++.   ++..+.-|
T Consensus        52 h~lf~GPPG~GKTTLA~IIA~e~~~---~~~~~sg~   84 (233)
T PF05496_consen   52 HMLFYGPPGLGKTTLARIIANELGV---NFKITSGP   84 (233)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHCT-----EEEEECC
T ss_pred             eEEEECCCccchhHHHHHHHhccCC---CeEeccch
Confidence            4889999999999999999999864   44444444

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PF13173 AAA_14: AAA domain

Probab=96.60  E-value=0.0025  Score=49.74  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=23.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +++++|.|+-|+||||++..+++.+.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            57899999999999999999998885

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=96.59  E-value=0.0046  Score=52.88  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=33.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .+|.++.|.|++|+||||++..++...-..|..+.++..
T Consensus        21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~   59 (225)
T PRK09361         21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT   59 (225)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence            578999999999999999999999887666788876653

>PLN02748 tRNA dimethylallyltransferase

Probab=96.58  E-value=0.0019  Score=61.42  Aligned_cols=30  Identities=23%  Similarity=0.300  Sum_probs=27.4

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +..++++|+|.||.||||||++..|++.++
T Consensus        18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~   47 (468)
T PLN02748         18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFP   47 (468)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            456788999999999999999999999986

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.58  E-value=0.0046  Score=55.34  Aligned_cols=30  Identities=20%  Similarity=0.177  Sum_probs=26.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      ..+.+|.|.|++||||||+++.|...+...
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~  131 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS  131 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence            457899999999999999999999998654

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.58  E-value=0.0019  Score=48.94  Aligned_cols=24  Identities=21%  Similarity=0.203  Sum_probs=21.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      |.|.|++|+|||++++.|++.+..
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~   24 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLK   24 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHH
Confidence            679999999999999999998864

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.57  E-value=0.0021  Score=55.95  Aligned_cols=30  Identities=20%  Similarity=0.373  Sum_probs=26.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..+|-+++|.||+||||||+.+.++--...
T Consensus        26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p   55 (248)
T COG1116          26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKP   55 (248)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            468999999999999999999999876643

>PRK06851 hypothetical protein; Provisional

Probab=96.57  E-value=0.0045  Score=57.20  Aligned_cols=37  Identities=22%  Similarity=0.312  Sum_probs=32.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .++++|.|++|+||||++..+++.+..+|+.+....-
T Consensus       214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC  250 (367)
T PRK06851        214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC  250 (367)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            4689999999999999999999999999999876543

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.57  E-value=0.0047  Score=51.32  Aligned_cols=39  Identities=23%  Similarity=0.169  Sum_probs=30.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .++.-++|.|++|+|||.+|..++.++-..|+++..+..
T Consensus        45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~   83 (178)
T PF01695_consen   45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA   83 (178)
T ss_dssp             SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred             ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence            356679999999999999999999988888999887653

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK12377 putative replication protein; Provisional

Probab=96.56  E-value=0.0037  Score=54.75  Aligned_cols=35  Identities=23%  Similarity=0.205  Sum_probs=31.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .-++|.|++|+|||+++..++..+...|++|..+.
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~  136 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT  136 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            56899999999999999999999988899887654

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.56  E-value=0.0022  Score=50.16  Aligned_cols=30  Identities=23%  Similarity=0.325  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..+|-+++|.|+.||||||+.+.|...+..
T Consensus         8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~   37 (137)
T PF00005_consen    8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPP   37 (137)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred             EcCCCEEEEEccCCCccccceeeecccccc
Confidence            357899999999999999999999876653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.54  E-value=0.005  Score=53.39  Aligned_cols=37  Identities=14%  Similarity=0.144  Sum_probs=31.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      +..++|.||+|+|||+++..++..+...|.++.++..
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~   81 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL   81 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence            4578999999999999999999988877887776543

>PRK13764 ATPase; Provisional

Probab=96.54  E-value=0.0038  Score=61.19  Aligned_cols=39  Identities=21%  Similarity=0.402  Sum_probs=31.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP   92 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p   92 (259)
                      +...|.|.|++||||||+++.|.+.+...+..+..+..|
T Consensus       256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp  294 (602)
T PRK13764        256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESP  294 (602)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCC
Confidence            346699999999999999999999998777666454433

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.51  E-value=0.0032  Score=52.46  Aligned_cols=29  Identities=21%  Similarity=0.350  Sum_probs=25.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+|..|+|.|+.||||||+.+.|...+..
T Consensus        23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~   51 (186)
T cd01130          23 EARKNILISGGTGSGKTTLLNALLAFIPP   51 (186)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence            46889999999999999999999887764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.50  E-value=0.0024  Score=54.22  Aligned_cols=29  Identities=24%  Similarity=0.365  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        26 ITKGEMVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987664

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.50  E-value=0.0025  Score=53.06  Aligned_cols=29  Identities=28%  Similarity=0.429  Sum_probs=25.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+.+.|.-.+.
T Consensus        15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        15 AERGEVLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45889999999999999999999987554

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=96.49  E-value=0.0026  Score=52.13  Aligned_cols=27  Identities=33%  Similarity=0.362  Sum_probs=23.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      .+++.++|.|++|+||||+++.|....
T Consensus        33 l~~k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   33 LKGKTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             HTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            456999999999999999999997753

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=96.49  E-value=0.0093  Score=51.33  Aligned_cols=39  Identities=18%  Similarity=0.294  Sum_probs=32.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~   90 (259)
                      ..+|.+++|.|++|+||||++..++-.+-.. |.++.++.
T Consensus        10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s   49 (242)
T cd00984          10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS   49 (242)
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence            3588999999999999999999998877555 88877654

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.48  E-value=0.0025  Score=54.10  Aligned_cols=29  Identities=21%  Similarity=0.239  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          27 IEKGEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             EcCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            45899999999999999999999987664

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.48  E-value=0.0026  Score=53.76  Aligned_cols=29  Identities=24%  Similarity=0.360  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+.
T Consensus        24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45899999999999999999999987664

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.48  E-value=0.0026  Score=53.85  Aligned_cols=29  Identities=24%  Similarity=0.214  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          24 ISAGEFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45889999999999999999999988664

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10536 hypothetical protein; Provisional

Probab=96.47  E-value=0.033  Score=49.03  Aligned_cols=38  Identities=21%  Similarity=0.155  Sum_probs=28.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHH-HhhCCCeEEEEecC
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSY-LEGLGHSVELWRFP   92 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~-l~~~g~~v~~~~~p   92 (259)
                      ..++++.|+.|+|||+++..++.. +....+..+++..|
T Consensus        74 ~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP  112 (262)
T PRK10536         74 KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRP  112 (262)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCC
Confidence            469999999999999999999884 43334554444444

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.47  E-value=0.0026  Score=53.85  Aligned_cols=29  Identities=28%  Similarity=0.370  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+.
T Consensus        25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        25 IRKGEFLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45889999999999999999999987654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK08116 hypothetical protein; Validated

Probab=96.46  E-value=0.02  Score=50.73  Aligned_cols=36  Identities=22%  Similarity=0.107  Sum_probs=31.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +.-+.|.|++|+|||.++..++.++...|+++..+.
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~  149 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN  149 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            456899999999999999999999987788887665

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.46  E-value=0.0087  Score=51.76  Aligned_cols=39  Identities=28%  Similarity=0.309  Sum_probs=29.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+|.++.|.|++|+||||++..+...+-..|..+.++.
T Consensus        21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~   59 (230)
T PRK08533         21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS   59 (230)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence            357889999999999999998666555544576666554

>PRK05973 replicative DNA helicase; Provisional

Probab=96.45  E-value=0.0071  Score=52.66  Aligned_cols=39  Identities=23%  Similarity=0.136  Sum_probs=32.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+|.+++|.|.+|+||||++-.++...-..|.++.++.
T Consensus        61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS   99 (237)
T PRK05973         61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT   99 (237)
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            468999999999999999999998876655688876654

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=96.44  E-value=0.0047  Score=57.01  Aligned_cols=27  Identities=19%  Similarity=0.391  Sum_probs=24.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ++-+|+|.|+.||||||+...|...+.
T Consensus       133 ~~glilI~GpTGSGKTTtL~aLl~~i~  159 (358)
T TIGR02524       133 QEGIVFITGATGSGKSTLLAAIIRELA  159 (358)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            567999999999999999999999885

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.44  E-value=0.0061  Score=52.17  Aligned_cols=37  Identities=14%  Similarity=0.107  Sum_probs=30.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+..++|.|++|+|||+++..++..+...|..+..+.
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~   77 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD   77 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence            4567899999999999999999998876677766554

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.44  E-value=0.015  Score=58.48  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=29.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh-hCC-CeEEEE
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE-GLG-HSVELW   89 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~-~~g-~~v~~~   89 (259)
                      +|.+|.|.||.|+||||.+.+|+..+. ..| .+|...
T Consensus       184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~li  221 (767)
T PRK14723        184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALL  221 (767)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEe
Confidence            578999999999999999999998883 445 355443

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.43  E-value=0.0029  Score=53.50  Aligned_cols=29  Identities=24%  Similarity=0.354  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          23 VEKGEIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45889999999999999999999987653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.43  E-value=0.0037  Score=55.84  Aligned_cols=31  Identities=26%  Similarity=0.293  Sum_probs=26.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCC
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGH   84 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~   84 (259)
                      ++.-|+|.|++|+||||+|..+++.+...|+
T Consensus        57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~   87 (284)
T TIGR02880        57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGY   87 (284)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence            4556999999999999999999999976654

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.43  E-value=0.0029  Score=52.55  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=22.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLL   76 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~   76 (259)
                      ..+|-+++|.|+.||||||+.+.+.
T Consensus        18 i~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          18 IPLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHh
Confidence            4689999999999999999999884

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.42  E-value=0.0098  Score=55.13  Aligned_cols=37  Identities=30%  Similarity=0.402  Sum_probs=29.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CC-CeEEE
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LG-HSVEL   88 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g-~~v~~   88 (259)
                      ..+|.+|+|.||+|+||||++.+|+.++.. .| ..+..
T Consensus       134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~l  172 (374)
T PRK14722        134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVAL  172 (374)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEE
Confidence            356889999999999999999999998743 35 34443

>PRK06893 DNA replication initiation factor; Validated

Probab=96.42  E-value=0.0057  Score=52.79  Aligned_cols=37  Identities=8%  Similarity=-0.048  Sum_probs=30.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+.+.|.|++|+|||+++..++..+...|..+.++.
T Consensus        38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~   74 (229)
T PRK06893         38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP   74 (229)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence            3467899999999999999999999877777776544

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.42  E-value=0.0027  Score=57.91  Aligned_cols=28  Identities=32%  Similarity=0.506  Sum_probs=24.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..|-+++|.||+||||||+.+.++--..
T Consensus        27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          27 EDGEFVVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4788999999999999999999976554

>TIGR00101 ureG urease accessory protein UreG

Probab=96.42  E-value=0.0087  Score=50.60  Aligned_cols=27  Identities=22%  Similarity=0.140  Sum_probs=24.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +..|+|.|+.||||||+++.+...+..
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~~   27 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALRQ   27 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhCc
Confidence            357999999999999999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.41  E-value=0.003  Score=54.02  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ..+|.+++|.|+.||||||+++.|+-.+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          23 IPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4589999999999999999999999877

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=96.41  E-value=0.0056  Score=48.01  Aligned_cols=34  Identities=15%  Similarity=0.123  Sum_probs=29.2

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCC
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGH   84 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~   84 (259)
                      ...|+.+++|-|++|+|||-+++.|++.+=..|.
T Consensus        49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~   82 (127)
T PF06309_consen   49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGM   82 (127)
T ss_pred             CCCCCEEEEeecCCCCcHHHHHHHHHHHHHhccc
Confidence            4578899999999999999999999999755444

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.40  E-value=0.003  Score=53.73  Aligned_cols=29  Identities=21%  Similarity=0.248  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        28 IGKGEIVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987664

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.40  E-value=0.003  Score=54.39  Aligned_cols=29  Identities=21%  Similarity=0.387  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+.
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          23 VRRGEILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987664

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=96.39  E-value=0.013  Score=53.71  Aligned_cols=49  Identities=18%  Similarity=0.174  Sum_probs=33.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH--hhCCCeEEEEecCCCCChHHHHHHHHHh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYL--EGLGHSVELWRFPDRTTSVGQMISAYLS  107 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l--~~~g~~v~~~~~p~~~~~~g~~ir~~l~  107 (259)
                      .+|+|.|.+|||||.++-.|+..+  ...+..+..+..   +.++...+++.+.
T Consensus         2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~---n~~l~~~l~~~l~   52 (352)
T PF09848_consen    2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCG---NHPLRNKLREQLA   52 (352)
T ss_pred             eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEe---cchHHHHHHHHHh
Confidence            479999999999999999999999  444555544332   2334444554443

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.39  E-value=0.0031  Score=53.37  Aligned_cols=29  Identities=24%  Similarity=0.361  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          23 VEPGEFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.39  E-value=0.0031  Score=53.06  Aligned_cols=29  Identities=14%  Similarity=0.157  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        21 IEKGKMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45889999999999999999999987664

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=96.38  E-value=0.0062  Score=50.40  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=25.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      ++++|.|.-||||||+.+.|.+ ....|.++..+
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI   33 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVI   33 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEE
Confidence            5789999999999999999998 54556665433

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.0023  Score=62.96  Aligned_cols=34  Identities=21%  Similarity=0.185  Sum_probs=29.9

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCC
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGH   84 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~   84 (259)
                      .-.+|++|+|.||||.|||++++.+++.|+...+
T Consensus       434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf  467 (906)
T KOG2004|consen  434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF  467 (906)
T ss_pred             ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence            3468999999999999999999999999986543

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.38  E-value=0.0041  Score=54.36  Aligned_cols=28  Identities=25%  Similarity=0.360  Sum_probs=24.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      +.+++|.|++|+||||+++.+...+...
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~   70 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQE   70 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCCC
Confidence            4588999999999999999999988643

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.37  E-value=0.009  Score=51.09  Aligned_cols=39  Identities=26%  Similarity=0.334  Sum_probs=29.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~~   91 (259)
                      .+|.++.|+|++|+|||+++..+....-.. |.++.++..
T Consensus        17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~   56 (226)
T PF06745_consen   17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF   56 (226)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence            578999999999999999999876544344 777776653

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.37  E-value=0.0032  Score=54.29  Aligned_cols=29  Identities=28%  Similarity=0.323  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (241)
T cd03256          24 INPGEFVALIGPSGAGKSTLLRCLNGLVE   52 (241)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            45899999999999999999999987664

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.37  E-value=0.0032  Score=54.41  Aligned_cols=29  Identities=21%  Similarity=0.289  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        25 INPGEFVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            46899999999999999999999987664

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.37  E-value=0.0032  Score=53.52  Aligned_cols=29  Identities=28%  Similarity=0.314  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          25 VYKGEIFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46889999999999999999999987664

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional

Probab=96.37  E-value=0.0067  Score=59.67  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=32.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +.++|.|.|.+||||||++++|..+|..+|++|-.+.
T Consensus         9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIK   45 (597)
T PRK14491          9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIK   45 (597)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEE
Confidence            3469999999999999999999999999999875544

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.36  E-value=0.0032  Score=53.02  Aligned_cols=29  Identities=24%  Similarity=0.390  Sum_probs=25.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          23 LYAGEIIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45789999999999999999999987653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.36  E-value=0.0063  Score=53.56  Aligned_cols=38  Identities=13%  Similarity=0.202  Sum_probs=31.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+|.++.|.|++|+||||++..++...-..|.++.++.
T Consensus        34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis   71 (259)
T TIGR03878        34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT   71 (259)
T ss_pred             ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence            47899999999999999999998776545577776543

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.36  E-value=0.0031  Score=53.73  Aligned_cols=29  Identities=24%  Similarity=0.391  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -.+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (220)
T cd03293          27 VEEGEFVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35889999999999999999999987654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.36  E-value=0.0033  Score=52.30  Aligned_cols=29  Identities=24%  Similarity=0.298  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          22 VKEGEVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            35789999999999999999999987664

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.35  E-value=0.0032  Score=53.59  Aligned_cols=29  Identities=28%  Similarity=0.440  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          23 VPEGEIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.35  E-value=0.0036  Score=51.70  Aligned_cols=29  Identities=24%  Similarity=0.276  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|...+.
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (178)
T cd03229          23 IEAGEIVALLGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=96.35  E-value=0.0032  Score=53.72  Aligned_cols=29  Identities=24%  Similarity=0.365  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   56 (228)
T cd03257          28 IKKGETLGLVGESGSGKSTLARAILGLLK   56 (228)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987664

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.35  E-value=0.0035  Score=53.06  Aligned_cols=29  Identities=34%  Similarity=0.485  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          23 IADGEFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35899999999999999999999988664

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.35  E-value=0.0031  Score=54.26  Aligned_cols=29  Identities=24%  Similarity=0.324  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (236)
T cd03219          23 VRPGEIHGLIGPNGAGKTTLFNLISGFLR   51 (236)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            45899999999999999999999987654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.34  E-value=0.0031  Score=53.34  Aligned_cols=27  Identities=26%  Similarity=0.284  Sum_probs=23.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+| +++|.|+.||||||+++.|.-.+.
T Consensus        24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          24 GPG-MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             cCC-cEEEECCCCCCHHHHHHHHhCCCC
Confidence            468 999999999999999999987654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.34  E-value=0.035  Score=48.69  Aligned_cols=32  Identities=13%  Similarity=0.113  Sum_probs=28.3

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      ...+|-.+.|.|++|+||||+++.+...+...
T Consensus        12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~   43 (249)
T cd01128          12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITKN   43 (249)
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence            34689999999999999999999999988764

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.34  E-value=0.0031  Score=53.38  Aligned_cols=29  Identities=21%  Similarity=0.407  Sum_probs=25.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -.+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   50 (213)
T cd03235          22 VKPGEFLAIVGPNGAGKSTLLKAILGLLK   50 (213)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            45899999999999999999999977653

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.33  E-value=0.0036  Score=52.92  Aligned_cols=29  Identities=24%  Similarity=0.288  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+.+.|+-.+.
T Consensus        23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          23 VKKGEVVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987664

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK06526 transposase; Provisional

Probab=96.32  E-value=0.0044  Score=54.47  Aligned_cols=35  Identities=29%  Similarity=0.153  Sum_probs=29.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL   88 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~   88 (259)
                      .+.-++|.||+|+|||+++..|...+-..|++|..
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f  131 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF  131 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence            45568999999999999999999988777887654

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.32  E-value=0.0036  Score=53.76  Aligned_cols=30  Identities=13%  Similarity=0.166  Sum_probs=26.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..+|-+++|.|+.||||||+++.|+..+..
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~   57 (233)
T cd03258          28 VPKGEIFGIIGRSGAGKSTLIRCINGLERP   57 (233)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            458999999999999999999999887653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08727 hypothetical protein; Validated

Probab=96.32  E-value=0.0073  Score=52.26  Aligned_cols=36  Identities=25%  Similarity=0.219  Sum_probs=31.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ...|+|.|++|+|||+++..+...+...|+++.++.
T Consensus        41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~   76 (233)
T PRK08727         41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP   76 (233)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence            355999999999999999999998888888877654

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.31  E-value=0.011  Score=50.58  Aligned_cols=39  Identities=26%  Similarity=0.192  Sum_probs=30.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+|.+++|.|++|+||||++..++...-..|..+..+.
T Consensus        17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is   55 (229)
T TIGR03881        17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT   55 (229)
T ss_pred             CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence            457899999999999999999987654434577776654

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.31  E-value=0.0039  Score=50.99  Aligned_cols=29  Identities=21%  Similarity=0.248  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+.
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223          24 IKPGDRLLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45899999999999999999999987664

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.31  E-value=0.0038  Score=51.26  Aligned_cols=29  Identities=28%  Similarity=0.385  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (173)
T cd03230          23 VEKGEIYGLLGPNGAGKTTLIKIILGLLK   51 (173)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46889999999999999999999987654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=96.30  E-value=0.0038  Score=52.69  Aligned_cols=29  Identities=21%  Similarity=0.368  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          23 VKKGEIYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            45899999999999999999999987554

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.30  E-value=0.0034  Score=57.57  Aligned_cols=29  Identities=28%  Similarity=0.487  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -.+|-++++.||+||||||+.+.|+--..
T Consensus        28 i~~Gef~~lLGPSGcGKTTlLR~IAGfe~   56 (352)
T COG3842          28 IKKGEFVTLLGPSGCGKTTLLRMIAGFEQ   56 (352)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45889999999999999999999987543

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.30  E-value=0.0037  Score=53.78  Aligned_cols=29  Identities=17%  Similarity=0.189  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+.
T Consensus        32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (233)
T PRK11629         32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDT   60 (233)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45789999999999999999999987654

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.30  E-value=0.0041  Score=51.10  Aligned_cols=29  Identities=21%  Similarity=0.310  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          25 IEPGESLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            45889999999999999999999987664

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.30  E-value=0.0043  Score=54.56  Aligned_cols=30  Identities=20%  Similarity=0.284  Sum_probs=27.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..+|.+++|.||.||||||+.+.|..-+..
T Consensus        25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p   54 (258)
T COG1120          25 IPKGEITGILGPNGSGKSTLLKCLAGLLKP   54 (258)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            468999999999999999999999998864

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.29  E-value=0.0064  Score=55.74  Aligned_cols=39  Identities=15%  Similarity=0.326  Sum_probs=29.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEecC
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWRFP   92 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~~p   92 (259)
                      ++-+|.|.|+.||||||+...|...+... +..+..+..|
T Consensus       121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp  160 (343)
T TIGR01420       121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP  160 (343)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence            46789999999999999999999888642 3344444433

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.29  E-value=0.014  Score=50.53  Aligned_cols=39  Identities=18%  Similarity=0.085  Sum_probs=30.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      -.+|.++.|.|++|+||||++..+...--..|.++.++.
T Consensus        18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs   56 (237)
T TIGR03877        18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA   56 (237)
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            358999999999999999999887554324577776554

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.27  E-value=0.056  Score=44.25  Aligned_cols=27  Identities=22%  Similarity=0.272  Sum_probs=22.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +.+-+|-|+.||||||+-..+...+..
T Consensus         2 ~~l~IvaG~NGsGKstv~~~~~~~~~~   28 (187)
T COG4185           2 KRLDIVAGPNGSGKSTVYASTLAPLLP   28 (187)
T ss_pred             ceEEEEecCCCCCceeeeeccchhhcC
Confidence            457788899999999998887766653

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.27  E-value=0.0039  Score=53.87  Aligned_cols=29  Identities=28%  Similarity=0.272  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+.
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (239)
T cd03296          25 IPSGELVALLGPSGSGKTTLLRLIAGLER   53 (239)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.27  E-value=0.004  Score=53.03  Aligned_cols=29  Identities=31%  Similarity=0.409  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   51 (220)
T cd03265          23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLK   51 (220)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35889999999999999999999987654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.27  E-value=0.0042  Score=51.34  Aligned_cols=29  Identities=24%  Similarity=0.338  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+.
T Consensus        22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~   50 (180)
T cd03214          22 IEAGEIVGILGPNGAGKSTLLKTLAGLLK   50 (180)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.26  E-value=0.0039  Score=52.16  Aligned_cols=27  Identities=30%  Similarity=0.298  Sum_probs=24.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      ..+|.+++|.|+.||||||+.+.|+-.
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          30 VKPGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999999853

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.26  E-value=0.004  Score=53.66  Aligned_cols=29  Identities=28%  Similarity=0.304  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+.
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (236)
T TIGR03864        24 VRPGEFVALLGPNGAGKSTLFSLLTRLYV   52 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            45899999999999999999999987654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=96.26  E-value=0.0039  Score=53.80  Aligned_cols=27  Identities=15%  Similarity=0.308  Sum_probs=24.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        23 VKKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999999876

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.26  E-value=0.014  Score=55.93  Aligned_cols=37  Identities=30%  Similarity=0.413  Sum_probs=29.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh-hCC-CeEEEE
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE-GLG-HSVELW   89 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~-~~g-~~v~~~   89 (259)
                      .+|.+|.|.||.|+||||.+.+|+..+. ..| .+|..+
T Consensus       254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI  292 (484)
T PRK06995        254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALL  292 (484)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            4678999999999999999999999884 344 355443

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.25  E-value=0.0044  Score=51.12  Aligned_cols=29  Identities=24%  Similarity=0.274  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|++||||||+++.|+-.+.
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (178)
T cd03247          25 LKQGEKIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            45889999999999999999999987654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=96.23  E-value=0.0042  Score=52.93  Aligned_cols=29  Identities=14%  Similarity=-0.020  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+.+.|+-.+.
T Consensus        10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177         10 MGYHEHIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            35789999999999999999999987654

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.23  E-value=0.0088  Score=50.36  Aligned_cols=24  Identities=21%  Similarity=0.472  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      .+.+|.||||+||||++..+...+
T Consensus        18 ~~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   18 GITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCChHHHHHHHHHHh
Confidence            378999999999998888887777

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=96.23  E-value=0.0042  Score=53.69  Aligned_cols=29  Identities=28%  Similarity=0.197  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|++||||||+.+.|+-.+.
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (242)
T PRK11124         25 CPQGETLVLLGPSGAGKSSLLRVLNLLEM   53 (242)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987654

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.23  E-value=0.0044  Score=51.87  Aligned_cols=29  Identities=21%  Similarity=0.385  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         23 FLPSAITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35789999999999999999999988654

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.23  E-value=0.0044  Score=52.43  Aligned_cols=29  Identities=28%  Similarity=0.351  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (207)
T PRK13539         25 LAAGEALVLTGPNGSGKTTLLRLIAGLLP   53 (207)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987654

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.23  E-value=0.0043  Score=53.10  Aligned_cols=29  Identities=24%  Similarity=0.294  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   61 (228)
T PRK10584         33 VKRGETIALIGESGSGKSTLLAILAGLDD   61 (228)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            45899999999999999999999987664

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=96.23  E-value=0.01  Score=55.79  Aligned_cols=31  Identities=19%  Similarity=0.132  Sum_probs=25.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCC
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGH   84 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~   84 (259)
                      .+.-|.+.||+|+||||+++.|++.++...+
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi   76 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFI   76 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence            3456889999999999999999999965433

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=96.23  E-value=0.0043  Score=53.15  Aligned_cols=29  Identities=21%  Similarity=0.405  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (225)
T PRK10247         30 LRAGEFKLITGPSGCGKSTLLKIVASLIS   58 (225)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            46899999999999999999999987653

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.23  E-value=0.0043  Score=53.22  Aligned_cols=29  Identities=24%  Similarity=0.378  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (232)
T cd03218          23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVK   51 (232)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45889999999999999999999987654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd04163 Era Era subfamily

Probab=96.22  E-value=0.0045  Score=48.83  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ...|++.|++|+||||+++.|..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~   25 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVG   25 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            45799999999999999999864

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>COG4240 Predicted kinase [General function prediction only]

Probab=96.22  E-value=0.0081  Score=51.87  Aligned_cols=37  Identities=19%  Similarity=0.314  Sum_probs=31.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCC-CeEEE
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLG-HSVEL   88 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g-~~v~~   88 (259)
                      ..++.++.|.||-||||||++..|...|..+| +++..
T Consensus        47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~   84 (300)
T COG4240          47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTAT   84 (300)
T ss_pred             cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEE
Confidence            35688999999999999999999999998887 45544

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.22  E-value=0.012  Score=50.60  Aligned_cols=40  Identities=18%  Similarity=0.144  Sum_probs=31.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      ..+|.++.|.|++||||||++..+....-..|.++.++..
T Consensus        22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~   61 (234)
T PRK06067         22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT   61 (234)
T ss_pred             CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence            4578999999999999999999996554345777766553

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=96.22  E-value=0.0043  Score=53.21  Aligned_cols=29  Identities=24%  Similarity=0.398  Sum_probs=26.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=96.21  E-value=0.0043  Score=53.34  Aligned_cols=29  Identities=31%  Similarity=0.521  Sum_probs=26.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+.
T Consensus         9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   37 (230)
T TIGR02770         9 LKRGEVLALVGESGSGKSLTCLAILGLLP   37 (230)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35889999999999999999999998765

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.21  E-value=0.0046  Score=51.96  Aligned_cols=29  Identities=28%  Similarity=0.387  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   52 (200)
T PRK13540         24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45899999999999999999999987553

>PRK08181 transposase; Validated

Probab=96.21  E-value=0.0076  Score=53.45  Aligned_cols=37  Identities=27%  Similarity=0.223  Sum_probs=31.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++.-++|.|++|+|||.++..++..+-..|++|..+.
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~  141 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR  141 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence            4456999999999999999999998887898887654

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.21  E-value=0.0044  Score=54.31  Aligned_cols=29  Identities=28%  Similarity=0.505  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (255)
T PRK11248         24 LESGELLVVLGPSGCGKTTLLNLIAGFVP   52 (255)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987664

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=96.20  E-value=0.004  Score=53.56  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      ++|++.|.+||||||+++.+.+.
T Consensus         1 miI~i~G~~gsGKstva~~~~~~   23 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIEN   23 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHhc
Confidence            58999999999999999998653

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=96.19  E-value=0.074  Score=44.06  Aligned_cols=24  Identities=17%  Similarity=0.220  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +|+|.+..|||++|+++.|+++|+
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg   24 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLG   24 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT
T ss_pred             CEEECCCCCCChHHHHHHHHHHcC
Confidence            699999999999999999999994

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.19  E-value=0.0045  Score=47.08  Aligned_cols=20  Identities=25%  Similarity=0.353  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||+.+.|..
T Consensus         2 V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999974

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.19  E-value=0.0049  Score=46.72  Aligned_cols=22  Identities=36%  Similarity=0.305  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l   79 (259)
                      |+|.|..|+||||+++.|....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            7899999999999999998644

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.19  E-value=0.0082  Score=54.04  Aligned_cols=38  Identities=18%  Similarity=0.149  Sum_probs=28.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhC--CCeEEEEec
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL--GHSVELWRF   91 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~--g~~v~~~~~   91 (259)
                      .+..|+|.|+.||||||+++.|...+...  +..++.+..
T Consensus       131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd  170 (299)
T TIGR02782       131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIED  170 (299)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECC
Confidence            34678899999999999999999888542  334444443

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.18  E-value=0.0046  Score=53.57  Aligned_cols=29  Identities=17%  Similarity=0.274  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (241)
T PRK14250         26 FEGGAIYTIVGPSGAGKSTLIKLINRLID   54 (241)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45789999999999999999999987664

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=96.18  E-value=0.0046  Score=53.42  Aligned_cols=29  Identities=24%  Similarity=0.329  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   54 (241)
T PRK10895         26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVP   54 (241)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46899999999999999999999988664

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=96.18  E-value=0.0047  Score=52.51  Aligned_cols=29  Identities=21%  Similarity=0.187  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+.
T Consensus        27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~   55 (220)
T cd03245          27 IRAGEKVAIIGRVGSGKSTLLKLLAGLYK   55 (220)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            46899999999999999999999987654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=96.18  E-value=0.0045  Score=53.90  Aligned_cols=28  Identities=21%  Similarity=0.237  Sum_probs=25.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         29 FEQNQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4689999999999999999999998754

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.18  E-value=0.0048  Score=49.31  Aligned_cols=29  Identities=24%  Similarity=0.264  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|...+.
T Consensus        23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (144)
T cd03221          23 INPGDRIGLVGRNGAGKSTLLKLIAGELE   51 (144)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            46889999999999999999999977654

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=96.18  E-value=0.0047  Score=53.64  Aligned_cols=29  Identities=21%  Similarity=0.198  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   54 (250)
T PRK11264         26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQ   54 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45899999999999999999999987654

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=96.17  E-value=0.0048  Score=52.40  Aligned_cols=29  Identities=31%  Similarity=0.344  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -.+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (218)
T cd03266          28 VKPGEVTGLLGPNGAGKTTTLRMLAGLLE   56 (218)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            35789999999999999999999987654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=96.17  E-value=0.0048  Score=52.81  Aligned_cols=29  Identities=24%  Similarity=0.382  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~   54 (229)
T cd03254          26 IKPGETVAIVGPTGAGKTTLINLLMRFYD   54 (229)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            45889999999999999999999987664

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=96.17  E-value=0.0048  Score=52.87  Aligned_cols=28  Identities=29%  Similarity=0.464  Sum_probs=25.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+|.+++|.|++||||||+++.|+..+.
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   31 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLIP   31 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4789999999999999999999998664

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.17  E-value=0.005  Score=50.19  Aligned_cols=29  Identities=24%  Similarity=0.304  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          23 VRRGEVHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46899999999999999999999987654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.17  E-value=0.0045  Score=49.68  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +-|.|.|+.||||||+++.|..
T Consensus         2 krimliG~~g~GKTTL~q~L~~   23 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNG   23 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcC
Confidence            3578889999999999999966

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.16  E-value=0.0045  Score=60.21  Aligned_cols=30  Identities=30%  Similarity=0.371  Sum_probs=27.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      .+++++++.||+|+||||+++.|++.++..
T Consensus       101 ~~~~IL~LvGPpG~GKSsLa~~la~~le~~  130 (644)
T PRK15455        101 EKKQILYLLGPVGGGKSSLAERLKSLMERV  130 (644)
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence            467899999999999999999999999864

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.16  E-value=0.0048  Score=53.63  Aligned_cols=29  Identities=17%  Similarity=0.218  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14247         26 IPDNTITALMGPSGSGKSTLLRVFNRLIE   54 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            45889999999999999999999988764

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=96.16  E-value=0.0052  Score=53.65  Aligned_cols=29  Identities=24%  Similarity=0.243  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~   50 (246)
T cd03237          22 ISESEVIGILGPNGIGKTTFIKMLAGVLK   50 (246)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            35799999999999999999999988664

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=96.16  E-value=0.0049  Score=53.25  Aligned_cols=29  Identities=24%  Similarity=0.294  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   52 (240)
T PRK09493         24 IDQGEVVVIIGPSGSGKSTLLRCINKLEE   52 (240)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999988664

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.15  E-value=0.006  Score=58.51  Aligned_cols=37  Identities=27%  Similarity=0.504  Sum_probs=30.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP   92 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p   92 (259)
                      .++.+..|+||+|+||||.++.|++.+   |+.++-+..|
T Consensus       108 l~~~iLLltGPsGcGKSTtvkvLskel---g~~~~Ew~Np  144 (634)
T KOG1970|consen  108 LGSRILLLTGPSGCGKSTTVKVLSKEL---GYQLIEWSNP  144 (634)
T ss_pred             CCceEEEEeCCCCCCchhHHHHHHHhh---CceeeeecCC
Confidence            356799999999999999999999998   6777655544

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.15  E-value=0.0044  Score=54.74  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRL   75 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L   75 (259)
                      -+.|.+++|+|++||||||++..+
T Consensus        18 ip~g~~~~vtGvSGsGKStL~~~~   41 (261)
T cd03271          18 IPLGVLTCVTGVSGSGKSSLINDT   41 (261)
T ss_pred             ccCCcEEEEECCCCCchHHHHHHH
Confidence            478999999999999999999754

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.15  E-value=0.0081  Score=52.92  Aligned_cols=33  Identities=27%  Similarity=0.233  Sum_probs=26.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      .|.-|.++|++|+||||+|..|++.+   |.++..+
T Consensus        20 ~g~~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i   52 (262)
T TIGR02640        20 SGYPVHLRGPAGTGKTTLAMHVARKR---DRPVMLI   52 (262)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHHHHh---CCCEEEE
Confidence            45567789999999999999999876   4455543

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=96.15  E-value=0.0051  Score=51.75  Aligned_cols=29  Identities=41%  Similarity=0.472  Sum_probs=26.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|++||||||+++.|.-.+.
T Consensus        28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~~   56 (204)
T cd03250          28 VPKGELVAIVGPVGSGKSSLLSALLGELE   56 (204)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence            46899999999999999999999988664

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.14  E-value=0.0054  Score=50.25  Aligned_cols=29  Identities=24%  Similarity=0.304  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            45899999999999999999999988764

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.14  E-value=0.0051  Score=51.85  Aligned_cols=29  Identities=34%  Similarity=0.374  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|...+.
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   52 (204)
T PRK13538         24 LNAGELVQIEGPNGAGKTSLLRILAGLAR   52 (204)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999988664

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=96.14  E-value=0.0051  Score=51.99  Aligned_cols=29  Identities=14%  Similarity=0.289  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~   49 (211)
T cd03298          21 FAQGEITAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987664

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=96.13  E-value=0.0048  Score=53.72  Aligned_cols=29  Identities=21%  Similarity=0.205  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|++||||||+++.|+-.+.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   54 (253)
T TIGR02323        26 LYPGEVLGIVGESGSGKSTLLGCLAGRLA   54 (253)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999988664

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.13  E-value=0.0051  Score=50.94  Aligned_cols=29  Identities=24%  Similarity=0.306  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          23 VRAGEIVGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45789999999999999999999988765

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=96.13  E-value=0.0052  Score=53.19  Aligned_cols=29  Identities=28%  Similarity=0.418  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -.+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (242)
T cd03295          24 IAKGEFLVLIGPSGSGKTTTMKMINRLIE   52 (242)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45899999999999999999999987654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=96.13  E-value=0.0053  Score=52.39  Aligned_cols=29  Identities=17%  Similarity=0.235  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+.+.|+-.+.
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (222)
T PRK10908         25 MRPGEMAFLTGHSGAGKSTLLKLICGIER   53 (222)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987654

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=96.12  E-value=0.0049  Score=53.91  Aligned_cols=29  Identities=24%  Similarity=0.238  Sum_probs=26.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -.+|-+++|.|+.||||||+++.|+-.+.
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   57 (258)
T PRK11701         29 LYPGEVLGIVGESGSGKTTLLNALSARLA   57 (258)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999988764

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=96.12  E-value=0.0051  Score=52.74  Aligned_cols=29  Identities=24%  Similarity=0.267  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   73 (224)
T cd03220          45 VPRGERIGLIGRNGAGKSTLLRLLAGIYP   73 (224)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46899999999999999999999987553

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=96.12  E-value=0.005  Score=55.98  Aligned_cols=28  Identities=18%  Similarity=0.304  Sum_probs=24.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      +.-|.|+|++|+||||+++.|++.++..
T Consensus        64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~   91 (327)
T TIGR01650        64 DRRVMVQGYHGTGKSTHIEQIAARLNWP   91 (327)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHCCC
Confidence            4569999999999999999999999643

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.11  E-value=0.0052  Score=53.51  Aligned_cols=29  Identities=24%  Similarity=0.392  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   55 (253)
T PRK14267         27 IPQNGVFALMGPSGCGKSTLLRTFNRLLE   55 (253)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            45899999999999999999999988764

>PRK09169 hypothetical protein; Validated

Probab=96.11  E-value=0.019  Score=62.74  Aligned_cols=112  Identities=12%  Similarity=-0.113  Sum_probs=59.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME  133 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~  133 (259)
                      .+.-|+++|..|+||||+.+.|++.|....+...  .+.  ....|..|.+++...+ ..           |-.....+.
T Consensus      2109 ~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD--~kI--eks~GrkI~rIFa~eG-~F-----------Re~Eaa~V~ 2172 (2316)
T PRK09169       2109 GAQARRIEREVGPLLQALLQKLAGGLRVDKPHSV--RKI--AKKIGKKIARIQALRG-LS-----------PEQAAARVR 2172 (2316)
T ss_pred             hhcccceeeCCCCCHhHHHHHHHHHhCCCccccH--HHH--HHHhCCCHHHHHHhcC-ch-----------HHHHHHHHH
Confidence            3567999999999999999999999964221110  000  0112333444444322 10           111112344


Q ss_pred             HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC
Q 025041          134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG  195 (259)
Q Consensus       134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R  195 (259)
                      ..+. ...||..+...    .     ...+....    +..-.++|||+.+++++.+|+..+
T Consensus      2173 Dllr-~~vVLSTGGGa----v-----~~~enr~~----L~~~GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169       2173 DALR-WEVVLPAEGFG----A-----AVEQARQA----LGAKGLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred             HHhc-CCeEEeCCCCc----c-----cCHHHHHH----HHHCCEEEEEECCHHHHHHHhccC
Confidence            4444 44555432211    0     01111111    223348999999999999998743

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.11  E-value=0.0053  Score=53.74  Aligned_cols=29  Identities=17%  Similarity=0.311  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   63 (259)
T PRK14274         35 IPENEVTAIIGPSGCGKSTFIKTLNLMIQ   63 (259)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            45899999999999999999999997664

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=96.11  E-value=0.0053  Score=52.77  Aligned_cols=29  Identities=21%  Similarity=0.335  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~   52 (236)
T cd03253          24 IPAGKKVAIVGPSGSGKSTILRLLFRFYD   52 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            45899999999999999999999987664

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=96.10  E-value=0.0054  Score=52.80  Aligned_cols=29  Identities=21%  Similarity=0.410  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+.
T Consensus         8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   36 (230)
T TIGR01184         8 IQQGEFISLIGHSGCGKSTLLNLISGLAQ   36 (230)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35789999999999999999999987664

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=96.10  E-value=0.0055  Score=52.11  Aligned_cols=29  Identities=28%  Similarity=0.269  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   55 (221)
T cd03244          27 IKPGEKVGIVGRTGSGKSSLLLALFRLVE   55 (221)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            46889999999999999999999987653

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.10  E-value=0.005  Score=51.50  Aligned_cols=29  Identities=17%  Similarity=0.308  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -..|-+++|.|++||||||+.+.++--..
T Consensus        22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          22 VPAGEIVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             ecCCcEEEEECCCCccHHHHHHHHHhccC
Confidence            45788999999999999999999987553

>PLN02318 phosphoribulokinase/uridine kinase

Probab=96.10  E-value=0.0049  Score=60.15  Aligned_cols=27  Identities=26%  Similarity=0.361  Sum_probs=24.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ...+|.|.|++||||||+++.|+..+.
T Consensus        64 ~riIIGIaGpSGSGKTTLAk~LaglLp   90 (656)
T PLN02318         64 GIILVGVAGPSGAGKTVFTEKVLNFMP   90 (656)
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence            457899999999999999999998874

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.10  E-value=0.0053  Score=53.34  Aligned_cols=29  Identities=17%  Similarity=0.277  Sum_probs=25.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   54 (250)
T PRK14262         26 IFKNQITAIIGPSGCGKTTLLRSINRMND   54 (250)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            45899999999999999999999996553

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.10  E-value=0.01  Score=51.91  Aligned_cols=35  Identities=23%  Similarity=0.215  Sum_probs=31.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..++|.|++|+|||+++..++.++...|.++..+.
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it  134 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT  134 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            46899999999999999999999988888887654

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.09  E-value=0.007  Score=51.27  Aligned_cols=29  Identities=17%  Similarity=0.207  Sum_probs=25.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +..+.|+|.|+.||||||+.+.|.+.+..
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~   48 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD   48 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            35688999999999999999999988753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=96.09  E-value=0.0055  Score=53.19  Aligned_cols=29  Identities=21%  Similarity=0.319  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+.
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (247)
T TIGR00972        24 IPKNQVTALIGPSGCGKSTLLRSLNRMND   52 (247)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            46899999999999999999999987664

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=96.09  E-value=0.0054  Score=53.42  Aligned_cols=29  Identities=24%  Similarity=0.261  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|++||||||+.+.|+-.+.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (252)
T TIGR03005        23 VAAGEKVALIGPSGSGKSTILRILMTLEP   51 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=96.08  E-value=0.0055  Score=53.85  Aligned_cols=29  Identities=24%  Similarity=0.355  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~   63 (257)
T PRK11247         35 IPAGQFVAVVGRSGCGKSTLLRLLAGLET   63 (257)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45899999999999999999999987664

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.08  E-value=0.0051  Score=51.90  Aligned_cols=29  Identities=21%  Similarity=0.233  Sum_probs=26.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          30 VKPGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            46889999999999999999999988765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=96.08  E-value=0.0056  Score=51.45  Aligned_cols=30  Identities=20%  Similarity=0.258  Sum_probs=26.2

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +-.+|-++.+.|++||||||+.+.|.....
T Consensus        24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e~   53 (223)
T COG2884          24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEER   53 (223)
T ss_pred             eecCceEEEEECCCCCCHHHHHHHHHhhhc
Confidence            346889999999999999999999977664

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=96.07  E-value=0.0055  Score=53.70  Aligned_cols=29  Identities=17%  Similarity=0.326  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -.+|-+++|.|+.||||||+++.|+-.+.
T Consensus        36 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   64 (260)
T PRK10744         36 IAKNQVTAFIGPSGCGKSTLLRTFNRMYE   64 (260)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            45899999999999999999999987653

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=96.07  E-value=0.0094  Score=53.53  Aligned_cols=30  Identities=23%  Similarity=0.061  Sum_probs=28.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      ..+..|.|.|+-||||||+.+.+.++++..
T Consensus        18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~   47 (325)
T PF07693_consen   18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED   47 (325)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            578899999999999999999999999876

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=96.07  E-value=0.0056  Score=52.72  Aligned_cols=29  Identities=17%  Similarity=0.250  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (237)
T cd03252          25 IKPGEVVGIVGRSGSGKSTLTKLIQRFYV   53 (237)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            45899999999999999999999987764

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=96.07  E-value=0.006  Score=51.13  Aligned_cols=29  Identities=24%  Similarity=0.275  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        23 LNAGEALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987653

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=96.06  E-value=0.0057  Score=52.70  Aligned_cols=29  Identities=31%  Similarity=0.481  Sum_probs=26.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   54 (238)
T cd03249          26 IPPGKTVALVGSSGCGKSTVVSLLERFYD   54 (238)
T ss_pred             ecCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            46899999999999999999999988764

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=96.06  E-value=0.0058  Score=52.46  Aligned_cols=29  Identities=21%  Similarity=0.332  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (234)
T cd03251          25 IPAGETVALVGPSGSGKSTLVNLIPRFYD   53 (234)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            45899999999999999999999987764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=96.06  E-value=0.0056  Score=53.53  Aligned_cols=29  Identities=21%  Similarity=0.275  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~~   55 (258)
T PRK14241         27 IEPRSVTAFIGPSGCGKSTVLRTLNRMHE   55 (258)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            45889999999999999999999998664

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=96.05  E-value=0.0057  Score=52.36  Aligned_cols=29  Identities=21%  Similarity=0.305  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+++.|.-.+.
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          30 VESGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            45889999999999999999999987765

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=96.05  E-value=0.0057  Score=52.56  Aligned_cols=29  Identities=24%  Similarity=0.387  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (232)
T PRK10771         22 VERGERVAILGPSGAGKSTLLNLIAGFLT   50 (232)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987654

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.04  E-value=0.0059  Score=53.83  Aligned_cols=29  Identities=14%  Similarity=0.276  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~   60 (269)
T PRK13648         32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEK   60 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35899999999999999999999987664

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=96.04  E-value=0.0062  Score=51.49  Aligned_cols=33  Identities=12%  Similarity=0.203  Sum_probs=25.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHH--hhCCCe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYL--EGLGHS   85 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l--~~~g~~   85 (259)
                      ..|.+++|.||.|+||||+.+.+.-..  ...|..
T Consensus        23 ~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~   57 (199)
T cd03283          23 EKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAP   57 (199)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCE
Confidence            346899999999999999999997543  334543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.04  E-value=0.0059  Score=53.11  Aligned_cols=28  Identities=21%  Similarity=0.294  Sum_probs=24.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (252)
T PRK14255         28 FNQNEITALIGPSGCGKSTYLRTLNRMN   55 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            4589999999999999999999998654

>PRK06921 hypothetical protein; Provisional

Probab=96.03  E-value=0.012  Score=52.16  Aligned_cols=37  Identities=24%  Similarity=0.199  Sum_probs=32.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~   90 (259)
                      .+.-++|.|++|+|||+++..++..+... |++|..+.
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~  153 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP  153 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence            46678999999999999999999998776 88887654

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.03  E-value=0.0057  Score=53.27  Aligned_cols=29  Identities=24%  Similarity=0.328  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+++.|+-.+.
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (255)
T PRK11300         28 VREQEIVSLIGPNGAGKTTVFNCLTGFYK   56 (255)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence            45899999999999999999999988764

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=96.03  E-value=0.017  Score=52.68  Aligned_cols=38  Identities=18%  Similarity=0.250  Sum_probs=33.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      ..++++|+|.|-.|+||||++..|+..|...|++|..+
T Consensus        28 ~~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli   65 (329)
T cd02033          28 TKKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI   65 (329)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            35789999999999999999999999999889988654

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=96.03  E-value=0.003  Score=49.71  Aligned_cols=24  Identities=38%  Similarity=0.434  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      |.++|++|.||||+++.|++.++.
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~   25 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGL   25 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT-
T ss_pred             EeeECCCccHHHHHHHHHHHHcCC
Confidence            679999999999999999998854

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=96.03  E-value=0.0062  Score=51.24  Aligned_cols=27  Identities=19%  Similarity=0.353  Sum_probs=24.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      ..+|-+++|.|++||||||+.+.|+-.
T Consensus        23 i~~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          23 IKKGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999999876

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.02  E-value=0.0061  Score=53.67  Aligned_cols=28  Identities=21%  Similarity=0.279  Sum_probs=25.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+
T Consensus        44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         44 IEKHAVTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            4589999999999999999999998754

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=96.02  E-value=0.0063  Score=51.92  Aligned_cols=29  Identities=24%  Similarity=0.289  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        31 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   59 (224)
T TIGR02324        31 VNAGECVALSGPSGAGKSTLLKSLYANYL   59 (224)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=96.01  E-value=0.0063  Score=53.45  Aligned_cols=30  Identities=23%  Similarity=0.293  Sum_probs=26.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..+|.+++|.|+.||||||+.+.|.-.+..
T Consensus        23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p   52 (255)
T cd03236          23 PREGQVLGLVGPNGIGKSTALKILAGKLKP   52 (255)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            468999999999999999999999887753

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=96.00  E-value=0.0057  Score=53.80  Aligned_cols=29  Identities=21%  Similarity=0.123  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+.
T Consensus        34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T PRK10575         34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQP   62 (265)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            45899999999999999999999987654

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=96.00  E-value=0.0061  Score=53.84  Aligned_cols=29  Identities=21%  Similarity=0.500  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   58 (272)
T PRK15056         30 VPGGSIAALVGVNGSGKSTLFKALMGFVR   58 (272)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987653

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=96.00  E-value=0.0058  Score=56.57  Aligned_cols=24  Identities=21%  Similarity=0.238  Sum_probs=21.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+|-||||+||||+++.|+...+.
T Consensus        51 mIl~GPPG~GKTTlA~liA~~~~~   74 (436)
T COG2256          51 MILWGPPGTGKTTLARLIAGTTNA   74 (436)
T ss_pred             eEEECCCCCCHHHHHHHHHHhhCC
Confidence            567899999999999999998854

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.00  E-value=0.0064  Score=52.95  Aligned_cols=29  Identities=14%  Similarity=0.285  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -.+|-+++|.|+.||||||+++.|+-.+.
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   55 (252)
T PRK14256         27 FPENSVTAIIGPSGCGKSTVLRSINRMHD   55 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            35899999999999999999999988763

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=95.99  E-value=0.0065  Score=52.80  Aligned_cols=28  Identities=21%  Similarity=0.256  Sum_probs=25.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ..+|-+++|.|++||||||+.+.|+-.+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14240         26 IEENQVTALIGPSGCGKSTFLRTLNRMN   53 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            4589999999999999999999998754

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=95.99  E-value=0.0062  Score=53.40  Aligned_cols=29  Identities=24%  Similarity=0.442  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.||.||||||+.+.+.--+.
T Consensus        27 v~~G~~~~iiGPNGaGKSTLlK~iLGll~   55 (254)
T COG1121          27 VEKGEITALIGPNGAGKSTLLKAILGLLK   55 (254)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence            46889999999999999999999987554

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=95.98  E-value=0.0064  Score=51.59  Aligned_cols=29  Identities=21%  Similarity=0.436  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (213)
T TIGR01277        21 VADGEIVAIMGPSGAGKSTLLNLIAGFIE   49 (213)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45899999999999999999999987664

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=95.98  E-value=0.0067  Score=51.82  Aligned_cols=29  Identities=21%  Similarity=0.329  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+.
T Consensus        37 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   65 (226)
T cd03248          37 LHPGEVTALVGPSGSGKSTVVALLENFYQ   65 (226)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            46899999999999999999999987664

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=95.98  E-value=0.0069  Score=51.09  Aligned_cols=29  Identities=24%  Similarity=0.365  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   59 (207)
T cd03369          31 VKAGEKIGIVGRTGAGKSTLILALFRFLE   59 (207)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            46899999999999999999999987654

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.98  E-value=0.011  Score=52.94  Aligned_cols=39  Identities=15%  Similarity=0.348  Sum_probs=29.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEecC
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWRFP   92 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~~p   92 (259)
                      +--+|.++||.||||||....+..+++.. ...++.+..|
T Consensus       124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDP  163 (353)
T COG2805         124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDP  163 (353)
T ss_pred             CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCc
Confidence            34578899999999999999999999864 3333444444

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=95.98  E-value=0.0067  Score=53.45  Aligned_cols=29  Identities=17%  Similarity=0.227  Sum_probs=26.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   70 (267)
T PRK14235         42 IPEKTVTAFIGPSGCGKSTFLRCLNRMND   70 (267)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            45899999999999999999999998764

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=95.97  E-value=0.011  Score=52.02  Aligned_cols=39  Identities=33%  Similarity=0.291  Sum_probs=34.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP   92 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p   92 (259)
                      ++.-++|.|++|+|||.++..+..++-..|++|..+..|
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~  142 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP  142 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence            677899999999999999999999998779998876643

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.0057  Score=60.29  Aligned_cols=33  Identities=24%  Similarity=0.208  Sum_probs=29.3

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCC
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLG   83 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g   83 (259)
                      .-.+|+++++.||||.|||++++-+++.++...
T Consensus       346 ~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf  378 (782)
T COG0466         346 KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF  378 (782)
T ss_pred             ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE
Confidence            346899999999999999999999999997643

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=95.97  E-value=0.0067  Score=53.07  Aligned_cols=29  Identities=21%  Similarity=0.349  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~   55 (251)
T PRK09544         27 LKPGKILTLLGPNGAGKSTLVRVVLGLVA   55 (251)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987654

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.96  E-value=0.0068  Score=52.70  Aligned_cols=29  Identities=24%  Similarity=0.258  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -.+|-+++|.|+.||||||+++.|+-.+.
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14251         27 FEEKELTALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence            45889999999999999999999997663

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.96  E-value=0.016  Score=47.89  Aligned_cols=36  Identities=22%  Similarity=0.214  Sum_probs=28.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHh-hCCCeEEEEec
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLE-GLGHSVELWRF   91 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~-~~g~~v~~~~~   91 (259)
                      ..+.|.||+|+|||.+++.|++.+. ....+.+..+.
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~   40 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDM   40 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhh
Confidence            3588999999999999999999997 44445555543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.96  E-value=0.0066  Score=53.55  Aligned_cols=29  Identities=28%  Similarity=0.411  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        36 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   64 (269)
T PRK14259         36 IPRGKVTALIGPSGCGKSTVLRSLNRMND   64 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            45899999999999999999999987653

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.96  E-value=0.007  Score=51.46  Aligned_cols=29  Identities=24%  Similarity=0.345  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|...+.
T Consensus        34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   62 (214)
T PRK13543         34 VDAGEALLVQGDNGAGKTTLLRVLAGLLH   62 (214)
T ss_pred             ECCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987654

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.96  E-value=0.0063  Score=53.71  Aligned_cols=29  Identities=28%  Similarity=0.357  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (271)
T PRK13638         24 FSLSPVTGLVGANGCGKSTLFMNLSGLLR   52 (271)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            45789999999999999999999987654

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.95  E-value=0.0069  Score=52.58  Aligned_cols=28  Identities=18%  Similarity=0.245  Sum_probs=25.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         25 IEQNKITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3578999999999999999999998765

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=95.95  E-value=0.0067  Score=52.71  Aligned_cols=27  Identities=15%  Similarity=0.124  Sum_probs=24.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         28 FYPNEITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            357899999999999999999999764

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=95.95  E-value=0.0068  Score=52.37  Aligned_cols=29  Identities=28%  Similarity=0.368  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        44 i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~   72 (236)
T cd03267          44 IEKGEIVGFIGPNGAGKTTTLKILSGLLQ   72 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            45899999999999999999999987654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=95.94  E-value=0.0068  Score=53.30  Aligned_cols=29  Identities=31%  Similarity=0.402  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T TIGR02769        34 IEEGETVGLLGRSGCGKSTLARLLLGLEK   62 (265)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46899999999999999999999988664

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.94  E-value=0.0071  Score=52.63  Aligned_cols=29  Identities=21%  Similarity=0.241  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   55 (251)
T PRK14270         27 IYENKITALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            45899999999999999999999987653

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=95.94  E-value=0.0062  Score=58.82  Aligned_cols=29  Identities=24%  Similarity=0.268  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|..++|.|++||||||+++.|...+.
T Consensus       358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~  386 (529)
T TIGR02868       358 LPPGERVAILGPSGSGKSTLLMLLTGLLD  386 (529)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            46899999999999999999999987664

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=95.94  E-value=0.0063  Score=52.90  Aligned_cols=27  Identities=15%  Similarity=0.284  Sum_probs=24.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      ..+|-+++|.|+.||||||+++.|+-.
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         30 INKGEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            468999999999999999999999874

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.94  E-value=0.0066  Score=53.79  Aligned_cols=29  Identities=17%  Similarity=0.147  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|+-.+.
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~   58 (280)
T PRK13649         30 IEDGSYTAFIGHTGSGKSTIMQLLNGLHV   58 (280)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45889999999999999999999987654

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=95.94  E-value=0.0072  Score=51.39  Aligned_cols=29  Identities=28%  Similarity=0.445  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   52 (218)
T cd03290          24 IPTGQLTMIVGQVGCGKSSLLLAILGEMQ   52 (218)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            45889999999999999999999987664

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.94  E-value=0.0071  Score=52.62  Aligned_cols=30  Identities=17%  Similarity=0.203  Sum_probs=26.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..+|-+++|.|++||||||+++.|+-.+..
T Consensus        27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~   56 (251)
T PRK14249         27 FPERQITAIIGPSGCGKSTLLRALNRMNDI   56 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccCc
Confidence            358999999999999999999999887653

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=95.94  E-value=0.0068  Score=53.46  Aligned_cols=29  Identities=28%  Similarity=0.394  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|++||||||+++.|+-.+.
T Consensus        35 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   63 (268)
T PRK10419         35 LKSGETVALLGRSGCGKSTLARLLVGLES   63 (268)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46899999999999999999999987553

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=95.93  E-value=0.018  Score=50.39  Aligned_cols=39  Identities=26%  Similarity=0.231  Sum_probs=33.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+|.++.|.|+||||||+++....-.....|.++.++.
T Consensus        20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs   58 (260)
T COG0467          20 LPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS   58 (260)
T ss_pred             CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence            468899999999999999999999888877788887654

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=95.93  E-value=0.021  Score=48.75  Aligned_cols=38  Identities=21%  Similarity=0.164  Sum_probs=30.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+|.++.|.|++|+|||+++..++...-..|.++.++.
T Consensus        14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s   51 (224)
T TIGR03880        14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS   51 (224)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            47899999999999999999988766544577776654

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=95.93  E-value=0.012  Score=53.24  Aligned_cols=39  Identities=26%  Similarity=0.218  Sum_probs=33.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP   92 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p   92 (259)
                      .+.-+.|.|++|+|||.++..++..+...|+++..+..|
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~  193 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP  193 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence            456689999999999999999999998889988876643

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.93  E-value=0.0069  Score=52.65  Aligned_cols=27  Identities=19%  Similarity=0.268  Sum_probs=24.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      ..+|-+++|.|+.||||||+++.|+-.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         26 IEEKSVVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhhh
Confidence            458999999999999999999999753

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=95.93  E-value=0.0073  Score=52.17  Aligned_cols=29  Identities=24%  Similarity=0.296  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|++||||||+.+.|.-.+.
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (237)
T TIGR00968        23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQ   51 (237)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            46899999999999999999999987654

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=95.92  E-value=0.0074  Score=51.50  Aligned_cols=29  Identities=17%  Similarity=0.232  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (223)
T TIGR03740        23 VPKNSVYGLLGPNGAGKSTLLKMITGILR   51 (223)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987664

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=95.92  E-value=0.0072  Score=53.34  Aligned_cols=29  Identities=24%  Similarity=0.398  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~   75 (269)
T cd03294          47 VREGEIFVIMGLSGSGKSTLLRCINRLIE   75 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45899999999999999999999987664

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=95.92  E-value=0.0073  Score=50.60  Aligned_cols=28  Identities=21%  Similarity=0.286  Sum_probs=25.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+
T Consensus        32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          32 AKPGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4689999999999999999999998766

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.92  E-value=0.0072  Score=52.88  Aligned_cols=29  Identities=21%  Similarity=0.304  Sum_probs=25.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        35 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   63 (258)
T PRK14268         35 IPKNSVTALIGPSGCGKSTFIRCLNRMND   63 (258)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45899999999999999999999987553

>PRK04328 hypothetical protein; Provisional

Probab=95.91  E-value=0.019  Score=50.20  Aligned_cols=38  Identities=18%  Similarity=0.128  Sum_probs=30.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+|.++.|.|++|+||||++..+...--..|.++.++.
T Consensus        21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis   58 (249)
T PRK04328         21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA   58 (249)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence            57899999999999999999987665434577776554

>PLN03025 replication factor C subunit; Provisional

Probab=95.91  E-value=0.018  Score=52.07  Aligned_cols=28  Identities=29%  Similarity=0.264  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCC
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGH   84 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~   84 (259)
                      -+.|.||+|+||||++..+++.+...++
T Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~~~~~   63 (319)
T PLN03025         36 NLILSGPPGTGKTTSILALAHELLGPNY   63 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhcccC
Confidence            4678999999999999999999865443

>PRK10646 ADP-binding protein; Provisional

Probab=95.91  E-value=0.0088  Score=48.57  Aligned_cols=30  Identities=23%  Similarity=0.185  Sum_probs=27.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ...|.+|.+.|.-||||||+++.|++.|..
T Consensus        25 l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         25 CDGATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            456889999999999999999999999953

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=95.91  E-value=0.0073  Score=52.15  Aligned_cols=29  Identities=24%  Similarity=0.279  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   53 (242)
T TIGR03411        25 VDPGELRVIIGPNGAGKTTMMDVITGKTR   53 (242)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987664

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=95.91  E-value=0.014  Score=54.16  Aligned_cols=38  Identities=13%  Similarity=0.208  Sum_probs=28.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhC--CCeEEEEecC
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGL--GHSVELWRFP   92 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~--g~~v~~~~~p   92 (259)
                      .-+|+|.|+.||||||+...|.+++...  +..++.+..|
T Consensus       149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp  188 (372)
T TIGR02525       149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDP  188 (372)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence            3478899999999999999999988532  2345555544

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=95.91  E-value=0.0071  Score=53.61  Aligned_cols=29  Identities=24%  Similarity=0.280  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~~   52 (272)
T PRK13547         24 IEPGRVTALLGRNGAGKSTLLKALAGDLT   52 (272)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45889999999999999999999987664

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.91  E-value=0.0072  Score=53.35  Aligned_cols=29  Identities=24%  Similarity=0.353  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (271)
T PRK13632         32 INEGEYVAILGHNGSGKSTISKILTGLLK   60 (271)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45899999999999999999999987764

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=95.91  E-value=0.013  Score=53.25  Aligned_cols=26  Identities=19%  Similarity=0.290  Sum_probs=23.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +..|+|.|+.||||||+++.|...+.
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~i~  169 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAEIV  169 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            45789999999999999999998874

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.90  E-value=0.0071  Score=53.54  Aligned_cols=29  Identities=21%  Similarity=0.186  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+.
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (274)
T PRK13647         28 IPEGSKTALLGPNGAGKSTLLLHLNGIYL   56 (274)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            46899999999999999999999987654

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=95.90  E-value=0.0072  Score=53.31  Aligned_cols=29  Identities=21%  Similarity=0.266  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (269)
T PRK11831         30 VPRGKITAIMGPSGIGKTTLLRLIGGQIA   58 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999987664

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=95.90  E-value=0.0071  Score=52.99  Aligned_cols=29  Identities=24%  Similarity=0.295  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   53 (258)
T PRK13548         25 LRPGEVVAILGPNGAGKSTLLRALSGELS   53 (258)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999988664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	259
1e2d_A	215	Human Thymidylate Kinase Complexed With Thymidine M		3e-47
1nmy_A	209	Crystal Structure Of Human Thymidylate Kinase With		4e-47
2xx3_A	232	Human Thymidylate Kinase Complexed With Thymidine B		4e-47
1e98_A	215	Wild Type Human Thymidylate Kinase Complexed With A		7e-47
1e9c_A	215	Mutant Human Thymidylate Kinase Complexed With Tmp		9e-47
1e9f_A	217	Mutant Human Thymidylate Kinase Complexed With Tmp		3e-45
2wwf_A	212	Plasmodium Falciparum Thymidylate Kinase In Complex		8e-39
2v54_A	204	Crystal Structure Of Vaccinia Virus Thymidylate Kin		5e-34
2tmk_A	216	Yeast Thymidylate Kinase Complexed With 3'-Azido-3'		1e-33
2pbr_A	195	Crystal Structure Of Thymidylate Kinase (Aq_969) Fr		9e-15
2plr_A	213	Crystal Structure Of Dtmp Kinase (St1543) From Sulf		2e-10
3v9p_A	227	Crystal Structure Of Thymidylate Kinase From Burkho		4e-09
3hjn_A	197	Crystal Structure Of Thymidylate Kinase In Complex		1e-07
4tmk_A	213	Complex Of E. Coli Thymidylate Kinase With The Bisu		2e-07
3lv8_A	236	1.8 Angstrom Resolution Crystal Structure Of A Thym		5e-05
1g3u_A	214	Crystal Structure Of Mycobacterium Tuberculosis Thy		5e-05
3uxm_A	211	Structure Guided Development Of Novel Thymidine Mim		3e-04
4edh_A	213	The Crystal Structure Of Thymidylate Kinase From Ps		4e-04
3uwo_A	220	Structure Guided Development Of Novel Thymidine Mim		4e-04
3uwk_A	232	Structure Guided Development Of Novel Thymidine Mim		4e-04
4e5u_A	213	The Crystal Structure Of Thymidylate Kinase From Ps		8e-04

>pdb|1E2D|A Chain A, Human Thymidylate Kinase Complexed With Thymidine Monophosphate, Adenosine Diphosphate And A Magnesium-Ion Length = 215

Iteration: 1
 Score =  185 bits (469), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/208 (42%), Positives = 138/208 (66%), Gaps = 5/208 (2%)
Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
           RGAL+VLEG+DR GK++Q  +L+  L   GH  EL RFP+R+T +G+++S+YL  +S ++
Sbjct: 8   RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
           DH++HLLFSANRWE+  +++ KL  G TL+VDRY++SGVAF+ AK    ++WCK P++GL
Sbjct: 68  DHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGL 127
Query: 173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCY-QMLRDSS--WKIIDACQSI 229
             PD VL+L +    AA           +  FQ +  +C+ Q+++D++  WK++DA +SI
Sbjct: 128 PKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSI 187
Query: 230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
           E V + ++ +  D +    + KP   LW
Sbjct: 188 EAVHEDIRVLSEDAIATATE-KPLGELW 214

>pdb|1NMY|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Fltmp And Appnhp Length = 209

Iteration: 1
 Score =  184 bits (468), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/208 (42%), Positives = 138/208 (66%), Gaps = 5/208 (2%)
Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
           RGAL+VLEG+DR GK++Q  +L+  L   GH  EL RFP+R+T +G+++S+YL  +S ++
Sbjct: 2   RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 61
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
           DH++HLLFSANRWE+  +++ KL  G TL+VDRY++SGVAF+ AK    ++WCK P++GL
Sbjct: 62  DHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGL 121
Query: 173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCY-QMLRDSS--WKIIDACQSI 229
             PD VL+L +    AA           +  FQ +  +C+ Q+++D++  WK++DA +SI
Sbjct: 122 PKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSI 181
Query: 230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
           E V + ++ +  D +    + KP   LW
Sbjct: 182 EAVHEDIRVLSEDAIATATE-KPLGELW 208

>pdb|2XX3|A Chain A, Human Thymidylate Kinase Complexed With Thymidine Butenyl Phosphonate Monophosphate And Adp Length = 232

Iteration: 1
 Score =  184 bits (467), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/208 (42%), Positives = 138/208 (66%), Gaps = 5/208 (2%)
Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
           RGAL+VLEG+DR GK++Q  +L+  L   GH  EL RFP+R+T +G+++S+YL  +S ++
Sbjct: 25  RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 84
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
           DH++HLLFSANRWE+  +++ KL  G TL+VDRY++SGVAF+ AK    ++WCK P++GL
Sbjct: 85  DHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGL 144
Query: 173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCY-QMLRDSS--WKIIDACQSI 229
             PD VL+L +    AA           +  FQ +  +C+ Q+++D++  WK++DA +SI
Sbjct: 145 PKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSI 204
Query: 230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
           E V + ++ +  D +    + KP   LW
Sbjct: 205 EAVHEDIRVLSEDAIRTATE-KPLGELW 231

>pdb|1E98|A Chain A, Wild Type Human Thymidylate Kinase Complexed With Aztmp And Adp Length = 215

Iteration: 1
 Score =  183 bits (465), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 87/208 (41%), Positives = 138/208 (66%), Gaps = 5/208 (2%)
Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
           RGAL+VLEG+DR GK++Q  +L+  L   GH  EL RFP+R+T +G+++S+YL  +S ++
Sbjct: 8   RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
           DH++HLLFSANRWE+  +++ KL  G TL+VDRY++SGVAF+ AK    ++WCK P++GL
Sbjct: 68  DHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGL 127
Query: 173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCY-QMLRDSS--WKIIDACQSI 229
             PD VL+L +    AA           +  FQ +  +C+ Q+++D++  WK++DA + I
Sbjct: 128 PKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKRI 187
Query: 230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
           E V ++++ +  D +    + KP   LW
Sbjct: 188 EAVHEEIRVLSEDAIRTATE-KPLGELW 214

>pdb|1E9C|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And Appnp Length = 215

Iteration: 1
 Score =  183 bits (464), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 87/208 (41%), Positives = 138/208 (66%), Gaps = 5/208 (2%)
Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
           RGAL+VLEG+DR GK++Q  +L+  L   GH  EL RFP+R+T +G+++S+YL  +S ++
Sbjct: 8   RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
           DH++HLLFSANRWE+  +++ KL  G TL+VDRY++SGVA++ AK    ++WCK P++GL
Sbjct: 68  DHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAYTGAKENFSLDWCKQPDVGL 127
Query: 173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCY-QMLRDSS--WKIIDACQSI 229
             PD VL+L +    AA           +  FQ +  +C+ Q+++D++  WK++DA +SI
Sbjct: 128 PKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSI 187
Query: 230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
           E V + ++ +  D +    + KP   LW
Sbjct: 188 EAVHEDIRVLSEDAIATATE-KPLKELW 214

>pdb|1E9F|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And Adp Length = 217

Iteration: 1
 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/210 (41%), Positives = 137/210 (65%), Gaps = 7/210 (3%)
Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
           RGAL+VLEG+D  GK++Q  +L+  L   GH  EL RFP+R+T +G+++S+YL  +S ++
Sbjct: 8   RGALIVLEGVDGAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
           DH++HLLFSANRWE+  +++ KL  G TL+VDRY++SGVAF+ AK    ++WCK P++GL
Sbjct: 68  DHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGL 127
Query: 173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLE--FQRKVAQCY-QMLRDSS--WKIIDACQ 227
             PD VL+L +    AA           +    FQ +  +C+ Q+++D++  WK++DA +
Sbjct: 128 PKPDLVLFLQLQLADAAKRGRARGELERYENGAFQERALRCFHQLMKDTTLNWKMVDASK 187
Query: 228 SIEDVEKQLKEIVLDQVTACKKGKPFSLLW 257
           SIE V + ++ +  D +    + KP   LW
Sbjct: 188 SIEAVHEDIRVLSEDAIATATE-KPLGELW 216

>pdb|2WWF|A Chain A, Plasmodium Falciparum Thymidylate Kinase In Complex With Tmp And Adp Length = 212

Iteration: 1
 Score =  157 bits (396), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 80/208 (38%), Positives = 122/208 (58%), Gaps = 7/208 (3%)
Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
           +G  +V EGLDR GK++Q   L+ YL+     V+   FP+R T +GQ+IS YL  ++ + 
Sbjct: 9   KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMS 68
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPEIGL 172
           + TIHLLFSANRWE  + +++ L  G  ++ DRY+YSGVA+SS A  ++  WC  P+ GL
Sbjct: 69  NETIHLLFSANRWEHMNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGL 128
Query: 173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQML-RDSSWKIIDACQSIED 231
           + PD V YL++PP  A             +E Q+K+ + Y+    +  W  IDA + IED
Sbjct: 129 IKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIYETYKHFAHEDYWINIDATRKIED 188
Query: 232 VEKQLKEIVLDQVTACK-KGKPFSLLWS 258
           +       ++ +VT  K + + F+ LWS
Sbjct: 189 IHND----IVKEVTKIKVEPEEFNFLWS 212

>pdb|2V54|A Chain A, Crystal Structure Of Vaccinia Virus Thymidylate Kinase Bound To Tdp Length = 204

Iteration: 1
 Score =  140 bits (354), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 125/209 (59%), Gaps = 11/209 (5%)
Query: 53  SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
           SRGAL+V EGLD+ GKT+QC  ++  +    ++++   FP R+T  G+MI  YL+ +   
Sbjct: 2   SRGALIVFEGLDKSGKTTQCMNIMESIPA--NTIKYLNFPQRSTVTGKMIDDYLTRKKTY 59
Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL 172
           +DH ++LLF ANRWE  S ++ +L+ G TLIVDRY++SGVA+++AKG  +   K+ E GL
Sbjct: 60  NDHIVNLLFCANRWEFASFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGL 119
Query: 173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQML---RDSSWKIIDACQSI 229
             PD V++L+   ++              + FQ+KV Q Y+ +    D  W+II + +  
Sbjct: 120 PKPDLVIFLESGSKEI--NRNVGEEIYEDVTFQQKVLQEYKKMIEEGDIHWQII-SSEFE 176
Query: 230 EDVEKQL-KEIVLDQVTACKKGKPFSLLW 257
           EDV+K+L K IV++ +       P   LW
Sbjct: 177 EDVKKELIKNIVIEAIHTVT--GPVGQLW 203

>pdb|2TMK|A Chain A, Yeast Thymidylate Kinase Complexed With 3'-Azido-3'- Deoxythymidine Monophosphate (Azt-Mp) Length = 216

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/193 (39%), Positives = 115/193 (59%), Gaps = 9/193 (4%)
Query: 53  SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS-H 111
            RG L+++EGLDR GKT+QC+ L   L+    + +L +FP+R+T +G +I+ YL++ S  
Sbjct: 3   GRGKLILIEGLDRTGKTTQCNILYKKLQ---PNCKLLKFPERSTRIGGLINEYLTDDSFQ 59
Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK---GIDIEWCKAP 168
           L D  IHLLFSANRWE    ++  L  G  +++DRY YSGVA+S+AK   G+D++WC  P
Sbjct: 60  LSDQAIHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQP 119
Query: 169 EIGLLAPDSVLYLDIPP-EKAAXXXXXXXXXXXHLEFQRKVAQCYQMLRDSSWKIIDACQ 227
           ++GLL PD  L+L     +  A            ++FQ KV Q +  L D   +  D   
Sbjct: 120 DVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQTFMKLLDKEIRKGDESI 179
Query: 228 SIEDV-EKQLKEI 239
           +I DV  K ++E+
Sbjct: 180 TIVDVTNKGIQEV 192

>pdb|2PBR|A Chain A, Crystal Structure Of Thymidylate Kinase (Aq_969) From Aquifex Aeolicus Vf5 Length = 195

Iteration: 1
 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 16/190 (8%)
Query: 57  LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT 116
           L+  EG+D  GKT+Q  +L  YL+  G+ V L+R P   T VG+++   L  +  LD+ T
Sbjct: 2   LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPG-GTKVGEVLREILLTE-ELDERT 59
Query: 117 IHLLFSANRWEKRSMMEAK----LKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKA-PEI 170
             LLF A+R     ++E K    LK    +I+DR+  S +A+    KG+D+E+ K   E 
Sbjct: 60  ELLLFEASRS---KLIEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEF 116
Query: 171 GL--LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQML--RDSSWKIIDAC 226
               + PD  L LDIP +  A           + EF  KV + +  L   + +  +IDA 
Sbjct: 117 ATRGVKPDITLLLDIPVD-IALRRLKEKNRFENKEFLEKVRKGFLELAKEEENVVVIDAS 175
Query: 227 QSIEDVEKQL 236
              E+V K++
Sbjct: 176 GEEEEVFKEI 185

>pdb|2PLR|A Chain A, Crystal Structure Of Dtmp Kinase (St1543) From Sulfolobus Tokodaii Strain7 Length = 213

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 24/207 (11%)
Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL--WRFPDRTTSVGQMISAYLSNQSH 111
           +G L+  EG+D  GK+SQ + L  ++E L   V L  W   D    + +  +      + 
Sbjct: 3   KGVLIAFEGIDGSGKSSQATLLKDWIE-LKRDVYLTEWNSSDWIHDIIKE-AKKKDLLTP 60
Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIG 171
           L    IH    ++R+E+  +    LK+G  +I DRY Y+  A  S +G+DI+W K     
Sbjct: 61  LTFSLIHATDFSDRYERYIL--PXLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSF 118
Query: 172 LLAPDSVLYLDIPP-----------------EKAAXXXXXXXXXXXHLEFQRKVAQCY-Q 213
            + PD   Y+ + P                 E  A            L++Q  + + Y +
Sbjct: 119 AIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLSPEEGFLKYQGLITEVYDK 178
Query: 214 MLRDSSWKIIDACQSIEDVEKQLKEIV 240
           +++D ++ +ID  ++ ++++ Q+++ V
Sbjct: 179 LVKDENFIVIDGTKTPKEIQIQIRKFV 205

>pdb|3V9P|A Chain A, Crystal Structure Of Thymidylate Kinase From Burkholderia Thailandensis Length = 227

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 18/204 (8%)
Query: 53  SRGALVVLEGLDRCGKTSQ----CSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSN 108
           +RG  +  EG+D  GKT+     C RL   L   G  V + R P   T +G+ +   L N
Sbjct: 23  ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPG-GTRLGETLREILLN 81
Query: 109 QSHLDDHTIHLLFSANRWEKRSM-MEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCK 166
           Q  +D  T  LL  A R E  ++ +E  L  G  ++ DR++ +  A+    +G+  +  +
Sbjct: 82  QP-MDLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLE 140
Query: 167 APE---IGLLAPDSVLYLDIPPE-----KAAXXXXXXXXXXXHLEFQRKVAQCYQMLRDS 218
           A E    G   PD  +  D+PP+     + A              F R  A+  +  +++
Sbjct: 141 ALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKFESESDAFFARTRAEYLRRAQEA 200
Query: 219 SWK--IIDACQSIEDVEKQLKEIV 240
             +  I+D+ + I  + KQL+ ++
Sbjct: 201 PHRFVIVDSSEPIAQIRKQLEGVL 224

>pdb|3HJN|A Chain A, Crystal Structure Of Thymidylate Kinase In Complex With Dtdp And Adp From Thermotoga Maritima Length = 197

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 57  LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT 116
            +  EG+D  GK++Q   L  YLE  G  V L R P   T  G+ I   L  +       
Sbjct: 2   FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG-GTETGEKIRKILLEEEVTPKAE 60
Query: 117 IHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSS-----AKGIDIEWCKAPEIG 171
           +  LF A+R    + ++  L  G  +++DRY+ S VA+        K I  E       G
Sbjct: 61  L-FLFLASRNLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDG 119
Query: 172 LLAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQML-RDSSWKII--DACQS 228
           L+ PD   Y+D+  E A              EF  +V + Y +L R+   +I+  D  +S
Sbjct: 120 LI-PDLTFYIDVDVETALKRKGELNRFEKR-EFLERVREGYLVLAREHPERIVVLDGKRS 177
Query: 229 IEDVEKQL 236
           IE++ + +
Sbjct: 178 IEEIHRDV 185

>pdb|4TMK|A Chain A, Complex Of E. Coli Thymidylate Kinase With The Bisubstrate Inhibitor Tp5a Length = 213

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 16/203 (7%)
Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLG-HSVELWRFPDRTTSVGQMISAYLSNQSHL 112
           R   +V+EGL+  GKT+  + ++  LE LG   +   R P  T    ++ S  L  +S  
Sbjct: 2   RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVG 61
Query: 113 D----DHTIHLLFSANRWE-KRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGID---IE 163
           D    D    L+F A R +   ++++  L  GT +I DR+  S  A+    +GID   + 
Sbjct: 62  DEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLA 121
Query: 164 WCKAPEIGLLAPDSVLYLDIPPE----KAAXXXXXXXXXXXHLEFQRKVAQCYQML--RD 217
             +   +G   PD  LYLD+ PE    +A              +F  +    Y  L  +D
Sbjct: 122 TLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQD 181
Query: 218 SSWKIIDACQSIEDVEKQLKEIV 240
            S   IDA Q +E V   ++  V
Sbjct: 182 KSIHTIDATQPLEAVMDAIRTTV 204

>pdb|3LV8|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of A Thymidylate Kinase (Tmk) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 In Complex With Tmp, Thymidine-5'-Diphosphate And Adp Length = 236

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 20/203 (9%)
Query: 57  LVVLEGLDRCGKTSQCSRLLSYLE--GLGHSVELWRFPDRTTSVGQMISAYLSNQ---SH 111
            +V+EGL+  GK++    ++  L+  G+ H +   R P  T  + + + A +  +     
Sbjct: 29  FIVIEGLEGAGKSTAIQVVVETLQQNGIDH-ITRTREPGGTL-LAEKLRALVKEEHPGEE 86
Query: 112 LDDHTIHLLFSANRWE-KRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDI-----EWC 165
           L D T  LL  A R +   ++++  L  G  ++ DR+  S  A+    G  I     +  
Sbjct: 87  LQDITELLLVYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGG-GRQIAPSTMQSL 145
Query: 166 KAPEIGLLAPDSVLYLDIPP----EKAAXXXXXXXXXXXHLEFQRKVAQCYQML--RDSS 219
           K   +G   PD  LYLDI P    E+A             + F  +  + Y  L   D S
Sbjct: 146 KQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEKMDISFFERARERYLELANSDDS 205
Query: 220 WKIIDACQSIEDVEKQLKEIVLD 242
             +IDA QSIE V   ++  + D
Sbjct: 206 VVMIDAAQSIEQVTADIRRALQD 228

>pdb|1G3U|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Thymidylate Kinase Complexed With Thymidine Monophosphate (Tmp) Length = 214

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 13/145 (8%)
Query: 57  LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD--- 113
           L+ +EG+D  GK +   +L       G SV    FP    SV   I+A   +  H D   
Sbjct: 2   LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLAS 61
Query: 114 -DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK------GIDIEWCK 166
             + +  LF+ +R      ++   +    +I+DRY  S  A+S+A+      G    W +
Sbjct: 62  SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQ 121
Query: 167 APE---IGLLAPDSVLYLDIPPEKA 188
             E   +GL  PD  + L +  E A
Sbjct: 122 RIEFARLGLPKPDWQVLLAVSAELA 146

>pdb|3UXM|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics Targeting Pseudomonas Aeruginosa Thymidylate Kinase: From Hit To Lead Generation Length = 211

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 17/201 (8%)
Query: 55  GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL---SNQSH 111
           G  V LEG +  GK++    L   L   G  V+L R P   T + + I   L   S++  
Sbjct: 2   GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTPLAERIRELLLAPSDEPM 60
Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE- 169
             D  + L+F+A       ++   L  G  ++ DR++ +  A+    +G+      A E 
Sbjct: 61  AADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALES 120
Query: 170 --IGLLAPDSVLYLDIPPE----KAAXXXXXXXXXXXHLEFQRKVAQCYQMLRDSS---- 219
              G L PD  L  D+P E    +AA              F   V Q Y + R +     
Sbjct: 121 FVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTY-LQRAAQAPER 179
Query: 220 WKIIDACQSIEDVEKQLKEIV 240
           ++++DA   + +V+  L  ++
Sbjct: 180 YQVLDAGLPLAEVQAGLDRLL 200

>pdb|4EDH|A Chain A, The Crystal Structure Of Thymidylate Kinase From Pseudomonas Aeruginosa Pao1 In Complex With Adp,Tmp And Mg. Length = 213

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 17/201 (8%)
Query: 55  GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL---SNQSH 111
           G  V LEG +  GK++    L   L   G  V+L R P   T + + I   L   S++  
Sbjct: 6   GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTPLAERIRELLLAPSDEPM 64
Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE- 169
             D  + L+F+A       ++   L  G  ++ DR++ +  A+    +G+      A E 
Sbjct: 65  AADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALES 124
Query: 170 --IGLLAPDSVLYLDIPPE----KAAXXXXXXXXXXXHLEFQRKVAQCYQMLRDSS---- 219
              G L PD  L  D+P E    +AA              F   V Q Y + R +     
Sbjct: 125 FVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTY-LQRAAQAPER 183
Query: 220 WKIIDACQSIEDVEKQLKEIV 240
           ++++DA   + +V+  L  ++
Sbjct: 184 YQVLDAGLPLAEVQAGLDRLL 204

>pdb|3UWO|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics Targeting Pseudomonas Aeruginosa Thymidylate Kinase: From Hit To Lead Generation Length = 220

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 17/201 (8%)
Query: 55  GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL---SNQSH 111
           G  V LEG +  GK++    L   L   G  V+L R P   T + + I   L   S++  
Sbjct: 11  GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTPLAERIRELLLAPSDEPM 69
Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE- 169
             D  + L+F+A       ++   L  G  ++ DR++ +  A+    +G+      A E 
Sbjct: 70  AADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALES 129
Query: 170 --IGLLAPDSVLYLDIPPE----KAAXXXXXXXXXXXHLEFQRKVAQCYQMLRDSS---- 219
              G L PD  L  D+P E    +AA              F   V Q Y + R +     
Sbjct: 130 FVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTY-LQRAAQAPER 188
Query: 220 WKIIDACQSIEDVEKQLKEIV 240
           ++++DA   + +V+  L  ++
Sbjct: 189 YQVLDAGLPLAEVQAGLDRLL 209

>pdb|3UWK|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics Targeting Pseudomonas Aeruginosa Thymidylate Kinase: From Hit To Lead Generation Length = 232

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 17/201 (8%)
Query: 55  GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL---SNQSH 111
           G  V LEG +  GK++    L   L   G  V+L R P   T + + I   L   S++  
Sbjct: 23  GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTPLAERIRELLLAPSDEPM 81
Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE- 169
             D  + L+F+A       ++   L  G  ++ DR++ +  A+    +G+      A E 
Sbjct: 82  AADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALES 141
Query: 170 --IGLLAPDSVLYLDIPPE----KAAXXXXXXXXXXXHLEFQRKVAQCYQMLRDSS---- 219
              G L PD  L  D+P E    +AA              F   V Q Y + R +     
Sbjct: 142 FVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTY-LQRAAQAPER 200
Query: 220 WKIIDACQSIEDVEKQLKEIV 240
           ++++DA   + +V+  L  ++
Sbjct: 201 YQVLDAGLPLAEVQAGLDRLL 221

>pdb|4E5U|A Chain A, The Crystal Structure Of Thymidylate Kinase From Pseudomonas Aeruginosa Pao1 In Complex With Thymidine Monophosphate. Length = 213

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 17/201 (8%)
Query: 55  GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL---SNQSH 111
           G  V LEG +  GK++    L   L   G  V+L R P   T + + I   L   S++  
Sbjct: 6   GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTPLAERIRELLLAPSDEPX 64
Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE- 169
             D  + L F+A       ++   L  G  ++ DR++ +  A+    +G+      A E 
Sbjct: 65  AADTELLLXFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALES 124
Query: 170 --IGLLAPDSVLYLDIPPE----KAAXXXXXXXXXXXHLEFQRKVAQCYQMLRDSS---- 219
              G L PD  L  D+P E    +AA              F   V Q Y + R +     
Sbjct: 125 FVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTY-LQRAAQAPER 183
Query: 220 WKIIDACQSIEDVEKQLKEIV 240
           ++++DA   + +V+  L  ++
Sbjct: 184 YQVLDAGLPLAEVQAGLDRLL 204

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	2e-87
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	3e-85
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	9e-79
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	4e-74
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	9e-68
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	4e-49
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	5e-32
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	1e-31
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	3e-31
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	6e-31
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	5e-30
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	6e-30
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	1e-29
2ccj_A	205	DTMP kinase, thymidylate kinase; transferase, nucl	3e-29
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	2e-25
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	3e-08
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	5e-07
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Length = 215

 Score =  257 bits (660), Expect = 2e-87
 Identities = 94/209 (44%), Positives = 142/209 (67%), Gaps = 5/209 (2%)

Query: 53  SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
            RGAL+VLEG+DR GK++Q  +L+  L   GH  EL RFP+R+T +G+++S+YL  +S +
Sbjct: 7   RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 66

Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIG 171
           +DH++HLLFSANRWE+  +++ KL  G TL+VDRY++SGVAF+ AK    ++WCK P++G
Sbjct: 67  EDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVG 126

Query: 172 LLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSS---WKIIDACQS 228
           L  PD VL+L +    AA+RG +G ERYE+  FQ +  +C+  L   +   WK++DA +S
Sbjct: 127 LPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKS 186

Query: 229 IEDVEKQLKEIVLDQVTACKKGKPFSLLW 257
           IE V + ++ +  D +    + KP   LW
Sbjct: 187 IEAVHEDIRVLSEDAIATATE-KPLGELW 214

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Length = 212

 Score =  252 bits (645), Expect = 3e-85
 Identities = 83/214 (38%), Positives = 126/214 (58%), Gaps = 5/214 (2%)

Query: 47  RIGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL 106
            + +   +G  +V EGLDR GK++Q   L+ YL+     V+   FP+R T +GQ+IS YL
Sbjct: 2   HMTDDKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYL 61

Query: 107 SNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWC 165
             ++ + + TIHLLFSANRWE  + +++ L  G  ++ DRY+YSGVA+SS    ++  WC
Sbjct: 62  KMENSMSNETIHLLFSANRWEHMNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWC 121

Query: 166 KAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML-RDSSWKIID 224
             P+ GL+ PD V YL++PP  A  R  YG E YE +E Q+K+ + Y+    +  W  ID
Sbjct: 122 MNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIYETYKHFAHEDYWINID 181

Query: 225 ACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWS 258
           A + IED+   + + V        + + F+ LWS
Sbjct: 182 ATRKIEDIHNDIVKEVTK---IKVEPEEFNFLWS 212

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Length = 204

 Score =  235 bits (602), Expect = 9e-79
 Identities = 79/208 (37%), Positives = 123/208 (59%), Gaps = 9/208 (4%)

Query: 53  SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
           SRGAL+V EGLD+ GKT+QC  ++  +      ++   FP R+T  G+MI  YL+ +   
Sbjct: 2   SRGALIVFEGLDKSGKTTQCMNIMESIPANT--IKYLNFPQRSTVTGKMIDDYLTRKKTY 59

Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL 172
           +DH ++LLF ANRWE  S ++ +L+ G TLIVDRY++SGVA+++AKG  +   K+ E GL
Sbjct: 60  NDHIVNLLFCANRWEFASFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGL 119

Query: 173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML---RDSSWKIIDACQSI 229
             PD V++L+   ++       G E YE + FQ+KV Q Y+ +    D  W+II +    
Sbjct: 120 PKPDLVIFLESGSKEINRN--VGEEIYEDVTFQQKVLQEYKKMIEEGDIHWQIISSEFEE 177

Query: 230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
           +  ++ +K IV++ +       P   LW
Sbjct: 178 DVKKELIKNIVIEAIHTVT--GPVGQLW 203

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* Length = 216

 Score =  224 bits (572), Expect = 4e-74
 Identities = 88/217 (40%), Positives = 127/217 (58%), Gaps = 16/217 (7%)

Query: 53  SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSH- 111
            RG L+++EGLDR GKT+QC+ L   L+       L +FP+R+T +G +I+ YL++ S  
Sbjct: 3   GRGKLILIEGLDRTGKTTQCNILYKKLQPNCK---LLKFPERSTRIGGLINEYLTDDSFQ 59

Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGI---DIEWCKAP 168
           L D  IHLLFSANRWE    ++  L  G  +++DRY YSGVA+S+AKG    D++WC  P
Sbjct: 60  LSDQAIHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQP 119

Query: 169 EIGLLAPDSVLYLDIPPEK-AAERGGYGGERYEHLEFQRKVAQCYQML-------RDSSW 220
           ++GLL PD  L+L        AE+ G+G ERYE ++FQ KV Q +  L        D S 
Sbjct: 120 DVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQTFMKLLDKEIRKGDESI 179

Query: 221 KIIDA-CQSIEDVEKQLKEIVLDQVTACKKGKPFSLL 256
            I+D   + I++VE  + +IV   ++       FS  
Sbjct: 180 TIVDVTNKGIQEVEALIWQIVEPVLSTHIDHDKFSFF 216

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Length = 214

 Score =  207 bits (530), Expect = 9e-68
 Identities = 50/211 (23%), Positives = 80/211 (37%), Gaps = 26/211 (12%)

Query: 57  LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSH----L 112
           L+ +EG+D  GK +   +L       G SV    FP    SV   I+A   +  H     
Sbjct: 2   LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLAS 61

Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK------GIDIEWCK 166
             + +  LF+ +R      ++   +    +I+DRY  S  A+S+A+      G    W +
Sbjct: 62  SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQ 121

Query: 167 APE---IGLLAPDSVLYLDIPPEKAAER--------GGYGGERYEH-LEFQRKVAQCYQM 214
             E   +GL  PD  + L +  E A ER         G   + YE   E Q++    Y  
Sbjct: 122 RIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAE 181

Query: 215 LRDSS----WKIIDACQSIEDVEKQLKEIVL 241
           L        W ++ A      +   L    +
Sbjct: 182 LAAQGWGGRWLVVGADVDPGRLAATLAPPDV 212

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Length = 213

 Score =  160 bits (406), Expect = 4e-49
 Identities = 49/209 (23%), Positives = 94/209 (44%), Gaps = 22/209 (10%)

Query: 53  SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
            +G L+  EG+D  GK+SQ + L  ++E L   V L  +   +  +  +I         L
Sbjct: 2   KKGVLIAFEGIDGSGKSSQATLLKDWIE-LKRDVYLTEWN-SSDWIHDIIKEAKKKDL-L 58

Query: 113 DDHTIHLLFSANRWE-KRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIG 171
              T  L+ + +  +     +   LK+G  +I DRY Y+  A  S +G+DI+W K     
Sbjct: 59  TPLTFSLIHATDFSDRYERYILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSF 118

Query: 172 LLAPDSVLYLDIPPEKAAERGGYGGER-----------------YEHLEFQRKVAQCYQM 214
            + PD   Y+ + P+ A ER      +                    L++Q  + + Y  
Sbjct: 119 AIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLSPEEGFLKYQGLITEVYDK 178

Query: 215 L-RDSSWKIIDACQSIEDVEKQLKEIVLD 242
           L +D ++ +ID  ++ ++++ Q+++ V +
Sbjct: 179 LVKDENFIVIDGTKTPKEIQIQIRKFVGE 207

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 3uwk_A* 3uwo_A* 3uxm_A* Length = 213

 Score =  115 bits (291), Expect = 5e-32
 Identities = 50/206 (24%), Positives = 80/206 (38%), Gaps = 21/206 (10%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL--SNQSH 111
            G  V LEG +  GK++    L   L   G  V+L R P   T + + I   L   +   
Sbjct: 5   TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTPLAERIRELLLAPSDEP 63

Query: 112 LDDHTIHLLFSANRWEKRSMMEAK----LKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCK 166
           +   T  LL  A R      +       L  G  ++ DR++ +  A+    +G+      
Sbjct: 64  MAADTELLLMFAAR---AQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIA 120

Query: 167 APE---IGLLAPDSVLYLDIPPEKAAERGGYGGE--RYEH--LEFQRKVAQCYQML--RD 217
           A E    G L PD  L  D+P E    R    G   R+E     F   V Q Y     + 
Sbjct: 121 ALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQA 180

Query: 218 SS-WKIIDACQSIEDVEKQLKEIVLD 242
              ++++DA   + +V+  L  ++ +
Sbjct: 181 PERYQVLDAGLPLAEVQAGLDRLLPN 206

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* Length = 213

 Score =  113 bits (286), Expect = 3e-31
 Identities = 60/209 (28%), Positives = 91/209 (43%), Gaps = 24/209 (11%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLG-HSVELWRFPDRTTSVGQMISAYLSNQSHL 112
           R   +V+EGL+  GKT+  + ++  LE LG   +   R P   T + + + + L +   +
Sbjct: 2   RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG-GTQLAEKLRSLLLDIKSV 60

Query: 113 DDHTIH-----LLFSANRWEKRSMMEAK----LKAGTTLIVDRYSYSGVAF-SSAKGIDI 162
            D  I      L+F A R +   ++E      L  GT +I DR+  S  A+    +GID 
Sbjct: 61  GDEVITDKAEVLMFYAARVQ---LVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQ 117

Query: 163 EWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGE--RYEH--LEFQRKVAQCYQML 215
                     +G   PD  LYLD+ PE   +R    GE  R E    +F  +    Y  L
Sbjct: 118 HMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLEL 177

Query: 216 --RDSSWKIIDACQSIEDVEKQLKEIVLD 242
             +D S   IDA Q +E V   ++  V  
Sbjct: 178 AAQDKSIHTIDATQPLEAVMDAIRTTVTH 206

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Length = 195

 Score =  112 bits (283), Expect = 6e-31
 Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 10/191 (5%)

Query: 57  LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT 116
           L+  EG+D  GKT+Q  +L  YL+  G+ V L+R P   T VG+++   L  +  LD+ T
Sbjct: 2   LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPG-GTKVGEVLREILLTE-ELDERT 59

Query: 117 IHLLFSANRWE-KRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE---IG 171
             LLF A+R +     +   LK    +I+DR+  S +A+    KG+D+E+ K        
Sbjct: 60  ELLLFEASRSKLIEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATR 119

Query: 172 LLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML--RDSSWKIIDACQSI 229
            + PD  L LDIP + A  R      R+E+ EF  KV + +  L   + +  +IDA    
Sbjct: 120 GVKPDITLLLDIPVDIALRRLK-EKNRFENKEFLEKVRKGFLELAKEEENVVVIDASGEE 178

Query: 230 EDVEKQLKEIV 240
           E+V K++   +
Sbjct: 179 EEVFKEILRAL 189

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} Length = 227

 Score =  111 bits (279), Expect = 5e-30
 Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 24/207 (11%)

Query: 53  SRGALVVLEGLDRCGKTSQCSRLLSYLE----GLGHSVELWRFPDRTTSVGQMISAYLSN 108
           +RG  +  EG+D  GKT+        L+      G  V + R P   T +G+ +   L N
Sbjct: 23  ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPG-GTRLGETLREILLN 81

Query: 109 QSHLDDHTIHLLFSANRWEKRSMMEAK----LKAGTTLIVDRYSYSGVAF-SSAKGIDIE 163
           Q  +D  T  LL  A R   R  +       L  G  ++ DR++ +  A+    +G+  +
Sbjct: 82  QP-MDLETEALLMFAGR---REHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRD 137

Query: 164 WCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGE--RYEH--LEFQRKVAQCYQML- 215
             +A E    G   PD  +  D+PP+ A+ R G      ++E     F  +    Y    
Sbjct: 138 KLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKFESESDAFFARTRAEYLRRA 197

Query: 216 -RDSS-WKIIDACQSIEDVEKQLKEIV 240
                 + I+D+ + I  + KQL+ ++
Sbjct: 198 QEAPHRFVIVDSSEPIAQIRKQLEGVL 224

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Length = 236

 Score =  111 bits (279), Expect = 6e-30
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 22/207 (10%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGH-SVELWRFPDRTTSVGQMI-SAYLSNQSH 111
               +V+EGL+  GK++    ++  L+  G   +   R P   T + + + +        
Sbjct: 26  NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG-GTLLAEKLRALVKEEHPG 84

Query: 112 --LDDHTIHLLFSANRWEKRSMMEAK----LKAGTTLIVDRYSYSGVAF-SSAKGIDIEW 164
             L D T  LL  A R +   ++E      L  G  ++ DR+  S  A+    + I    
Sbjct: 85  EELQDITELLLVYAARVQ---LVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPST 141

Query: 165 CKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGE--RYEH--LEFQRKVAQCYQML-- 215
            ++ +   +G   PD  LYLDI P+   ER    GE  R E   + F  +  + Y  L  
Sbjct: 142 MQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEKMDISFFERARERYLELAN 201

Query: 216 RDSSWKIIDACQSIEDVEKQLKEIVLD 242
            D S  +IDA QSIE V   ++  + D
Sbjct: 202 SDDSVVMIDAAQSIEQVTADIRRALQD 228

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Length = 229

 Score =  110 bits (277), Expect = 1e-29
 Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 15/203 (7%)

Query: 53  SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
           +  A +  EG +  GKT+  + +   L    + V + R P      G+ I   +   + +
Sbjct: 24  AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPG-GVPTGEEIRKIVLEGNDM 81

Query: 113 DDHTIHLLFSANRWE-KRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE- 169
           D  T  +LF+A+R E     +   LK G  ++ DRY  S +A+   A+GI +E  +A   
Sbjct: 82  DIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNE 141

Query: 170 --IGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE--HLEFQRKVAQCYQMLRDSS--- 219
             I  L PD  +YL++  E   ER         R +   L+F  KV + YQ +  +    
Sbjct: 142 FAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQR 201

Query: 220 WKIIDACQSIEDVEKQLKEIVLD 242
           +K ++A Q +E+V +   + ++ 
Sbjct: 202 FKSVNADQPLENVVEDTYQTIIK 224

>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A* Length = 205

 Score =  108 bits (272), Expect = 3e-29
 Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%)

Query: 55  GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDD 114
            A +  EG +  GKT+  + +   L    + V + R P      G+ I   +   + +D 
Sbjct: 2   SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPG-GVPTGEEIRKIVLEGNDMDI 59

Query: 115 HTIHLLFSANRWE-KRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE--- 169
            T  +LF+A+R E     +   LK G  ++ DRY  S +A+   A+GI +E  +A     
Sbjct: 60  RTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFA 119

Query: 170 IGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE--HLEFQRKVAQCYQMLRDSS---WK 221
           I  L PD  +YL++  E   ER         R +   L+F  KV + YQ +  +    +K
Sbjct: 120 INGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFK 179

Query: 222 IIDACQSIEDVEKQLKEIVLD 242
            ++A Q +E+V +   + ++ 
Sbjct: 180 SVNADQPLENVVEDTYQTIIK 200

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} Length = 223

 Score = 98.9 bits (247), Expect = 2e-25
 Identities = 43/201 (21%), Positives = 73/201 (36%), Gaps = 20/201 (9%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLE--GLGHSVELWRFPDRTTSVGQMISAYLSNQSH 111
               +  EG+D  GKT+Q   L  YL      ++V L R P   T + + +   L     
Sbjct: 20  GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG-GTLLNESVRNLLFKAQG 78

Query: 112 LDDHTIHLLFSANRWEKRSMMEAK----LKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCK 166
           LD  +  L F A R E            L     +I DR+  S +A+    +GID     
Sbjct: 79  LDSLSELLFFIAMRRE---HFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLID 135

Query: 167 APE--IGLLAPDSVLYLDIPPEKAAERGGYGGERYEH--LEFQRKVAQCYQML--RDSS- 219
                +  + PD    +D+   ++  R       YE   +EF  +V   +  +  ++   
Sbjct: 136 QLNDLVIDVYPDITFIIDVDINESLSRS--CKNGYEFADMEFYYRVRDGFYDIAKKNPHR 193

Query: 220 WKIIDACQSIEDVEKQLKEIV 240
             +I       D++      +
Sbjct: 194 CHVITDKSETYDIDDINFVHL 214

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Length = 192

 Score = 51.6 bits (123), Expect = 3e-08
 Identities = 27/196 (13%), Positives = 65/196 (33%), Gaps = 24/196 (12%)

Query: 57  LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT 116
           +VV+ G+   G T+     +  L   G + ++  F      V +  +          D  
Sbjct: 5   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSD-----RDQM 59

Query: 117 IHLLFSANR--WEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLA 174
             +     +   +      A++   + + VD       +  S     +    +  +  L 
Sbjct: 60  RKMDPETQKRIQKMAGRKIAEMAKESPVAVD-----THSTVSTPKGYLPGLPSWVLNELN 114

Query: 175 PDSVLYLDIPPEKAAERGGYGGERY----------EHLEFQRKVAQCYQMLRDSSWKIID 224
           PD ++ ++   ++   R      R           +H    R  A  Y +L  ++ KI+ 
Sbjct: 115 PDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQ 174

Query: 225 ACQSIEDVEKQLKEIV 240
                  +++ ++E+ 
Sbjct: 175 NRN--GLLDQAVEELT 188

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Length = 194

 Score = 47.8 bits (113), Expect = 5e-07
 Identities = 31/198 (15%), Positives = 62/198 (31%), Gaps = 24/198 (12%)

Query: 57  LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD--- 113
           + ++ G+   GK++  +++   L+  G + ++  + D   +    +              
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL 173
           +    L   A    K    EA+      L +D       A        +    +  I  +
Sbjct: 63  EKQKKLQIDA---AKGIAEEARAGGEGYLFID-----THAVIRTPSGYLPGLPSYVITEI 114

Query: 174 APDSVLYLDIPPEKAAERGGYGGERY-----------EHLEFQRKVAQCYQMLRDSSWKI 222
            P  +  L+  P+    R      R            E + F R  A    +L  S+ K+
Sbjct: 115 NPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKV 174

Query: 223 IDACQSIEDVEKQLKEIV 240
           I   +   D      EI+
Sbjct: 175 IVNVE--GDPSIAANEII 190

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Length = 205

 Score = 38.8 bits (90), Expect = 7e-04
 Identities = 23/201 (11%), Positives = 59/201 (29%), Gaps = 23/201 (11%)

Query: 58  VVLEGLDRCGKTSQCSRLLSYL--EGLGHSVELWRF-------PDRTTSVGQMISAYLSN 108
           + + G    GK++  + +   L  E     VE   +         +T    Q+      +
Sbjct: 3   IAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARS 62

Query: 109 QSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYS-YSGVAFSSAKGIDIEWCKA 167
           +       +  +       +  +          +    Y+ Y     +            
Sbjct: 63  KQLKQAKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENK 122

Query: 168 PEIGLLAPDSVLYLDIPPEKAAER---GGYGGERYEHLEFQRKVAQCY-QMLRDSSWK-- 221
                 + D V+YL +  + A  R    G   E     E+   + + Y +  + + +   
Sbjct: 123 L-----SFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFP 177

Query: 222 --IIDACQSIEDVEKQLKEIV 240
             ++DA   ++   + +   +
Sbjct: 178 FFVVDAELDVKTQIELIMNKL 198

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 8e-04
 Identities = 42/293 (14%), Positives = 81/293 (27%), Gaps = 101/293 (34%)

Query: 39  RMESSSSLRIG-NIDSRGALVVLEGLDRCGKTS-------------------------QC 72
           R++    LR           V+++G+   GKT                           C
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 73  SR---LLSYLEGLGHSVE---------LWRFPDRTTSVGQMISAYLSNQSH------LDD 114
           +    +L  L+ L + ++               R  S+   +   L ++ +      L +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 115 HTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLA 174
                + +A  W          K    L+  R  +  V    +               L 
Sbjct: 253 -----VQNAKAWNA---FNLSCK---ILLTTR--FKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 175 PDSVLYL----------DIPPEK-----------AAE-RGGYGG-ERYEHL---EFQRKV 208
           PD V  L          D+P E            A   R G    + ++H+   +    +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 209 AQCYQMLRDSSWK-IIDACQSI--EDVEKQLKEIVLDQVTACKKGKPFSLLWS 258
                +L  + ++ + D   S+        +  I+L            SL+W 
Sbjct: 360 ESSLNVLEPAEYRKMFDRL-SVFPPSA--HIPTILL------------SLIWF 397

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	100.0
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	100.0
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	100.0
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	100.0
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	100.0
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	100.0
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	100.0
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	100.0
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	100.0
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	100.0
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	100.0
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	100.0
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.97
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.96
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.95
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	99.9
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.89
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.89
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	99.89
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	99.86
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	99.86
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	99.86
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	99.85
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.84
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.83
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.83
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.81
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.8
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.79
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.78
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.77
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.77
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	99.76
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.75
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.74
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.73
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.73
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.73
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.73
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.72
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.72
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.72
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.71
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.7
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.7
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.7
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.69
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.69
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.69
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.69
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.69
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.67
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.67
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.66
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.65
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.61
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	99.59
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.56
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.54
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	99.53
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.52
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.52
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.51
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.49
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.47
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.4
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.39
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.37
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.37
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.36
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.35
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.35
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.33
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.32
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.3
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.29
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.28
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.27
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	99.27
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.27
1via_A	175	Shikimate kinase; structural genomics, transferase	99.25
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.24
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.23
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.23
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.19
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.18
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.14
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.14
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.14
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.14
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.12
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.11
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.11
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.1
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.09
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.06
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.05
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.05
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.02
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.99
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	98.95
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	98.93
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.9
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.81
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.8
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.79
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.79
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.78
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.75
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.68
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.68
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.66
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.65
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.53
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	98.5
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.25
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.24
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	98.08
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.96
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.87
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	97.72
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.72
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.66
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.64
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.57
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.57
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.55
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.45
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.4
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.33
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.32
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.31
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.27
3bos_A	242	Putative DNA replication factor; P-loop containing	97.26
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.26
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.25
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.23
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.21
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.19
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.15
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.14
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.12
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.11
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.11
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.09
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.08
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.07
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.05
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.05
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.04
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.03
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.03
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.03
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.01
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.0
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.99
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.98
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.98
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.97
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.96
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.9
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	96.9
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.86
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.86
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.81
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.8
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.78
2og2_A	359	Putative signal recognition particle receptor; nuc	96.77
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.77
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.77
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.77
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	96.76
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.74
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.74
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.73
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.73
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.72
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.7
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.69
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.67
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.66
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.66
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.64
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.63
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.63
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.61
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.61
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.61
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.59
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.59
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.58
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.56
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.56
2xxa_A	433	Signal recognition particle protein; protein trans	96.55
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.52
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.52
2qgz_A	308	Helicase loader, putative primosome component; str	96.51
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.51
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.5
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.45
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.44
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.44
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.43
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.43
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.42
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.42
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	96.42
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.41
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.41
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.41
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.4
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.4
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.4
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.39
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.39
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.39
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.38
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.38
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.37
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.37
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.37
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.36
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.35
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.35
1g6h_A	257	High-affinity branched-chain amino acid transport	96.34
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.32
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.31
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.31
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.29
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.29
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.28
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.26
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	96.26
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.26
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	96.23
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.22
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.22
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.21
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.21
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.21
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.2
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	96.19
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.17
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.16
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.15
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.12
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.11
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.1
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.09
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.07
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	96.06
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.06
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.05
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.04
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.03
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.03
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.02
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.02
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.02
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.01
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.99
3end_A	307	Light-independent protochlorophyllide reductase ir	95.99
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.98
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.98
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.98
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.98
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	95.97
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.95
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.91
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.91
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.91
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.89
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.88
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.88
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.88
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.86
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.84
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.83
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.83
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.83
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.82
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.8
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.8
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.79
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.73
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.72
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.71
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	95.71
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.7
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.7
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.7
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.69
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	95.68
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.67
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.66
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.66
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.65
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.64
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.64
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.63
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	95.62
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.61
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.6
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.6
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.59
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.58
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.57
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.57
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.56
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.56
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.55
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.53
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.49
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	95.47
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.47
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.44
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.44
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.44
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.42
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	95.41
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.41
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.39
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	95.37
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.36
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.35
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.35
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	95.35
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.34
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	95.32
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.32
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.31
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.3
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.3
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.3
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	95.3
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.29
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	95.27
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.26
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	95.25
3fwy_A	314	Light-independent protochlorophyllide reductase I	95.24
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.23
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.21
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.2
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.19
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.19
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.19
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.18
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.18
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.17
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	95.17
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.17
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.16
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	95.16
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.14
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.14
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.12
2chq_A	319	Replication factor C small subunit; DNA-binding pr	95.12
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.12
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.12
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.09
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.09
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.08
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.08
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.08
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.07
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.05
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.03
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.03
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.01
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	95.0
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	95.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.99
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	94.99
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.98
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	94.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.96
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.96
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.96
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.94
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.93
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	94.91
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.91
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	94.9
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	94.9
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.86
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	94.86
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.86
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	94.86
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	94.85
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	94.84
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	94.84
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	94.83
3pvs_A	447	Replication-associated recombination protein A; ma	94.82
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	94.81
2r44_A	331	Uncharacterized protein; putative ATPase, structur	94.8
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	94.8
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.79
3co5_A	143	Putative two-component system transcriptional RES	94.78
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	94.77
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	94.77
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	94.76
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.75
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	94.75
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	94.75
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	94.75
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	94.74
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.73
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	94.72
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.71
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	94.71
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	94.7
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	94.7
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.69
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	94.69
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	94.69
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	94.68
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	94.68
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	94.67
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	94.66
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	94.64
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	94.64
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	94.64
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	94.61
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	94.61
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	94.61
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	94.59
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	94.59
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.58
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	94.57
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.56
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	94.56
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	94.55
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	94.55
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.55
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.54
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.53
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	94.52
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	94.52
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	94.51
3io5_A	333	Recombination and repair protein; storage dimer, i	94.5
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	94.5
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.5
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	94.48
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	94.48
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.47
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.47
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	94.46
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	94.46
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	94.44
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.43
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.43
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.43
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	94.42
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.41
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.41
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	94.4
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.4
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	94.37
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	94.36
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	94.36
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	94.36
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	94.34
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	94.33
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	94.32
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	94.32
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.31
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	94.31
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.31
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	94.31
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	94.29
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	94.29
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	94.28
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	94.28
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	94.27
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	94.27
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	94.24
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	94.23
2fna_A	357	Conserved hypothetical protein; structural genomic	94.22
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.2
2fh5_B	214	SR-beta, signal recognition particle receptor beta	94.2
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.19
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.18
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	94.18
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	94.18
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	94.17
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	94.17
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	94.16
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	94.16
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	94.14
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.13
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	94.12
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.11
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	94.11
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	94.08
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	94.05
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.05
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.04
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.04
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.02
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.02

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=100.00  E-value=5.9e-40  Score=278.04  Aligned_cols=190  Identities=28%  Similarity=0.411  Sum_probs=167.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-HHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-SMME  133 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-~~i~  133 (259)
                      |++|+|||+||||||||++.|+++|. .|+.++.+++|+ ++++|+.|++++.++..+++.++.++|+++|+++. ..+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~eP~-~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~   79 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTREPG-GVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVI   79 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEESST-TCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeCCC-CChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999996 589999999998 78999999999988888999999999999999986 6789


Q ss_pred             HHHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc--hHHH
Q 025041          134 AKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE--HLEF  204 (259)
Q Consensus       134 ~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e--~~~~  204 (259)
                      |++.+|.+||+|||++|+++||+ ++|++.+|+..++   ...+.||++||||+||+++.+|+..|+   +++|  ..+|
T Consensus        80 p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~~~f  159 (205)
T 4hlc_A           80 PALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKF  159 (205)
T ss_dssp             HHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHHHHH
T ss_pred             HHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccCHHH
Confidence            99999999999999999999987 5789989887765   356899999999999999999986653   5566  4689


Q ss_pred             HHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 025041          205 QRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       205 ~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l~~  246 (259)
                      ++++++.|.+++.   .+|++||+++|+|+|.++|.+.|.++|+.
T Consensus       160 ~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L~~  204 (205)
T 4hlc_A          160 HEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK  204 (205)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence            9999999998753   36999999999999999999999988753

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=100.00  E-value=5.5e-40  Score=280.19  Aligned_cols=201  Identities=44%  Similarity=0.815  Sum_probs=180.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC-CCCHHHHHHHHHHhHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS-HLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~-~~~~~~~~ll~~a~r~~~~~  130 (259)
                      |.+|++|+|+|+|||||||+++.|+++|..   .+..+++|..++++|+.|++++.++. .+++.+++++|+++|+++.+
T Consensus         2 m~~g~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~   78 (216)
T 3tmk_A            2 MGRGKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD   78 (216)
T ss_dssp             CCCCCEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhcc---cceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999975   45677899768999999999988764 58899999999999998777


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCC---CCHHHHHhhhccCCCCCEEEEE-eCCHHHHHhhcCCCCCCcchHHHHH
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKG---IDIEWCKAPEIGLLAPDSVLYL-DIPPEKAAERGGYGGERYEHLEFQR  206 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~g---l~~~~~~~~~~~~~~PdlvI~L-d~~~e~~~~R~~~R~d~~e~~~~~~  206 (259)
                      .|+|++++|.+||+|||++|+++|++++|   .+.+|+..+....+.||++||| |+||+++.+|+..+.+++|..+|++
T Consensus        79 ~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~dr~E~~~f~~  158 (216)
T 3tmk_A           79 KIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQE  158 (216)
T ss_dssp             HHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCCTTCCHHHHH
T ss_pred             HHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcccccHHHHHH
Confidence            89999999999999999999999998765   4578888887788999999999 9999999999987778999999999


Q ss_pred             HHHHHHHhhhC-------CCeEEEc-CCCCHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 025041          207 KVAQCYQMLRD-------SSWKIID-ACQSIEDVEKQLKEIVLDQVTACKKGKPFSL  255 (259)
Q Consensus       207 rv~~~y~~l~~-------~~~~vID-a~~s~eev~~~I~~~i~~~l~~~~~~~~~~~  255 (259)
                      ++++.|.+++.       .+|++|| +++|+|+|.++|.+.|.+.+.....++|++.
T Consensus       159 rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~~~~~~~~~~~  215 (216)
T 3tmk_A          159 KVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLSTHIDHDKFSF  215 (216)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHSCCCTTCCCB
T ss_pred             HHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHhcccccccccc
Confidence            99999998742       4799999 8999999999999999999998888888864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=100.00  E-value=1.7e-38  Score=270.60  Aligned_cols=194  Identities=26%  Similarity=0.393  Sum_probs=173.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC--CCCHHHHHHHHHHhHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS--HLDDHTIHLLFSANRWEKR  129 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~--~~~~~~~~ll~~a~r~~~~  129 (259)
                      +.+|++|+|+|+|||||||+++.|+++|...|++++.+++|+ ++++|+.|++++.++.  .+++.++.++|+++|+++.
T Consensus         3 ~m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~-~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~   81 (213)
T 4edh_A            3 AMTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHL   81 (213)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC-SSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC-CCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence            458999999999999999999999999999999999999997 7899999999988763  5889999999999999986


Q ss_pred             -HHHHHHHhcCCeEEEcccccchhhhhcC-CCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC--CCcch-
Q 025041          130 -SMMEAKLKAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG--ERYEH-  201 (259)
Q Consensus       130 -~~i~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~--d~~e~-  201 (259)
                       ..++|++++|.+||+|||++|+++|+++ +|++.+|+..++   ...+.||++||||+||+++.+|+..|+  |++|. 
T Consensus        82 ~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~~  161 (213)
T 4edh_A           82 AGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQE  161 (213)
T ss_dssp             HHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTTTS
T ss_pred             HHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCccccc
Confidence             6789999999999999999999999984 788989887765   357899999999999999999998774  67774 


Q ss_pred             -HHHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 025041          202 -LEFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       202 -~~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l~~  246 (259)
                       .+|++++.+.|..+.+   ..|++||+++|+|+|.++|.+.|.+.+..
T Consensus       162 ~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~~  210 (213)
T 4edh_A          162 DRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLER  210 (213)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence             7999999999998753   36999999999999999999999988864

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=100.00  E-value=9.8e-39  Score=272.02  Aligned_cols=193  Identities=30%  Similarity=0.434  Sum_probs=171.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCC-eEEEEecCCCCChHHHHHHHHHhCC-----CCCCHHHHHHHHHHhHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGH-SVELWRFPDRTTSVGQMISAYLSNQ-----SHLDDHTIHLLFSANRWE  127 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~-~v~~~~~p~~~~~~g~~ir~~l~~~-----~~~~~~~~~ll~~a~r~~  127 (259)
                      +|++|+|||+||||||||++.|+++|...|+ .++.+++|+ ++++|+.|++++.++     ..+++.++.++|+++|++
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~-~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~   80 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG-GTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQ   80 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC-SSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCC-CCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHH
Confidence            6899999999999999999999999999998 788889997 789999999998743     468899999999999999


Q ss_pred             HH-HHHHHHHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC--CCcc
Q 025041          128 KR-SMMEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG--ERYE  200 (259)
Q Consensus       128 ~~-~~i~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~--d~~e  200 (259)
                      +. ..|+|++++|.+||+|||++|+++||+ .+|++.+|+..++   ...+.||++||||+||+++.+|+..|+  +++|
T Consensus        81 ~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~E  160 (213)
T 4tmk_A           81 LVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIE  160 (213)
T ss_dssp             HHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCTTT
T ss_pred             HHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCccchh
Confidence            87 578999999999999999999999998 4789999987665   457899999999999999999987653  5776


Q ss_pred             --hHHHHHHHHHHHHhhhC--CCeEEEcCCCCHHHHHHHHHHHHHHHHhhh
Q 025041          201 --HLEFQRKVAQCYQMLRD--SSWKIIDACQSIEDVEKQLKEIVLDQVTAC  247 (259)
Q Consensus       201 --~~~~~~rv~~~y~~l~~--~~~~vIDa~~s~eev~~~I~~~i~~~l~~~  247 (259)
                        ..+|++++.+.|..+.+  .++++||+++|+|+|.++|.+.|.+++...
T Consensus       161 ~~~~~f~~rv~~~y~~la~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~~~  211 (213)
T 4tmk_A          161 QESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKEL  211 (213)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTCTTEEEEETTSCHHHHHHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHHHHHHHCCcEEEECCCCCHHHHHHHHHHHHHHHHHhc
Confidence              47999999999998754  579999999999999999999999998654

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=100.00  E-value=1.2e-38  Score=268.46  Aligned_cols=186  Identities=28%  Similarity=0.431  Sum_probs=163.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK  135 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~  135 (259)
                      ++|+|||+||||||||++.|+++|...|++++.+++|+ +++.++.+++++... .+++.+..++|+++|+++...+.|+
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~-~t~~~~~ir~~l~~~-~~~~~~~~ll~~a~r~~~~~~I~~~   78 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG-GTETGEKIRKILLEE-EVTPKAELFLFLASRNLLVTEIKQY   78 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-SSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC-CCcHHHHHHHHhhcc-cCChHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999998 789999999987754 5778888999999998887889999


Q ss_pred             HhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 025041          136 LKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC  211 (259)
Q Consensus       136 l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~  211 (259)
                      +.+|.+||+|||++|+++|++ ++|.+.+|+..++   ...+.||++||||+||+++.+|...+ +++|..+|++++++.
T Consensus        79 L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~-dr~e~~ef~~rv~~~  157 (197)
T 3hjn_A           79 LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL-NRFEKREFLERVREG  157 (197)
T ss_dssp             HTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC----CTTCCHHHHHHHHHH
T ss_pred             HHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCc-CccccHHHHHHHHHH
Confidence            999999999999999999997 4788888887654   45678999999999999999998764 778888999999999


Q ss_pred             HHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          212 YQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       212 y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                      |.+++.   .+|++||+++|+|+|.++|.+.|.+.+
T Consensus       158 y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~rl  193 (197)
T 3hjn_A          158 YLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRRW  193 (197)
T ss_dssp             HHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSCC-
T ss_pred             HHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence            999853   369999999999999999999987654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=100.00  E-value=8e-38  Score=268.72  Aligned_cols=189  Identities=28%  Similarity=0.440  Sum_probs=163.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhC----CCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGL----GHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWE  127 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~----g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~  127 (259)
                      +.+|++|+|+|+|||||||+++.|+++|...    |++++.+++|+ ++++|+.|++++.++ .+++.++.++|+++|++
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~-~t~~g~~ir~~l~~~-~~~~~~~~llf~a~R~~   99 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPG-GTRLGETLREILLNQ-PMDLETEALLMFAGRRE   99 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSS-SSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCC-CChHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999988    99999899996 789999999998876 68899999999999999


Q ss_pred             HH-HHHHHHHhcCCeEEEcccccchhhhhcC-CCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC--CCcc
Q 025041          128 KR-SMMEAKLKAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG--ERYE  200 (259)
Q Consensus       128 ~~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~--d~~e  200 (259)
                      +. ..++|++++|.+||+|||++|+++|++. +|++.+|+..++   ...+.||++||||+||+++.+|+..|+  +++|
T Consensus       100 ~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~dr~E  179 (227)
T 3v9p_A          100 HLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKFE  179 (227)
T ss_dssp             HHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC---C
T ss_pred             HHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCccchh
Confidence            86 5789999999999999999999999974 788989987765   356899999999999999999998874  6787


Q ss_pred             h--HHHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          201 H--LEFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       201 ~--~~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      .  .+|++++.+.|..+.+   .+|++||+++++|+|.++|.+.|.+
T Consensus       180 ~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l~~  226 (227)
T 3v9p_A          180 SESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAA  226 (227)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            4  6999999999998753   3699999999999999999998864

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=100.00  E-value=3.9e-37  Score=265.89  Aligned_cols=195  Identities=27%  Similarity=0.395  Sum_probs=167.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCe-EEEEecCCCCChHHHHHHHHHhC-C--CCCCHHHHHHHHHHhHH
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHS-VELWRFPDRTTSVGQMISAYLSN-Q--SHLDDHTIHLLFSANRW  126 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~-v~~~~~p~~~~~~g~~ir~~l~~-~--~~~~~~~~~ll~~a~r~  126 (259)
                      ++.+|++|+|+|+|||||||+++.|+++|...|++ +..+++|. ++++|+.|++++.. +  ..+++.++.++|+++|+
T Consensus        23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~-~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~  101 (236)
T 3lv8_A           23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG-GTLLAEKLRALVKEEHPGEELQDITELLLVYAARV  101 (236)
T ss_dssp             ---CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC-SSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC-CCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHH
Confidence            34579999999999999999999999999999999 78889997 78999999999863 2  35889999999999999


Q ss_pred             HHH-HHHHHHHhcCCeEEEcccccchhhhhcC-CCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC--CCc
Q 025041          127 EKR-SMMEAKLKAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG--ERY  199 (259)
Q Consensus       127 ~~~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~--d~~  199 (259)
                      ++. ..++|++++|.+||+|||++|+++|+++ +|++.+|+..++   ...+.||++||||+||+++.+|+..|+  +++
T Consensus       102 ~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~  181 (236)
T 3lv8_A          102 QLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRI  181 (236)
T ss_dssp             HHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTT
T ss_pred             HHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchh
Confidence            987 5789999999999999999999999986 789888887654   356899999999999999999998764  577


Q ss_pred             ch--HHHHHHHHHHHHhhhC--CCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 025041          200 EH--LEFQRKVAQCYQMLRD--SSWKIIDACQSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       200 e~--~~~~~rv~~~y~~l~~--~~~~vIDa~~s~eev~~~I~~~i~~~l~~  246 (259)
                      |.  .+|++++.+.|.++.+  +.+++||+++|+|+|.++|.+.|.+.+.+
T Consensus       182 E~~~~~~~~rv~~~y~~la~~~~~~~vIDa~~sieeV~~~I~~~l~~~l~~  232 (236)
T 3lv8_A          182 EKMDISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDWLSQ  232 (236)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHCTTEEEEETTSCHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            74  7999999999998763  45999999999999999999999998865

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=100.00  E-value=2.3e-37  Score=265.12  Aligned_cols=195  Identities=23%  Similarity=0.352  Sum_probs=156.5

Q ss_pred             ccCCCCCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEE-EecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 025041           47 RIGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVEL-WRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSAN  124 (259)
Q Consensus        47 ~~~~~~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~-~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~  124 (259)
                      ++.....+|++|+|+|++||||||+++.|+++|.. .|+++.. +++|+ ++++|+.|++++.++..+++.++.++|+++
T Consensus        13 ~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~-~t~~g~~ir~~l~~~~~~~~~~e~llf~a~   91 (223)
T 3ld9_A           13 EAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG-GTLLNESVRNLLFKAQGLDSLSELLFFIAM   91 (223)
T ss_dssp             ------CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC-SSHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             cccccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC-CChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence            34445568999999999999999999999999998 8999887 89998 789999999998865458899999999999


Q ss_pred             HHHHHH-HHHHHHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCCCCc
Q 025041          125 RWEKRS-MMEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGERY  199 (259)
Q Consensus       125 r~~~~~-~i~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~  199 (259)
                      |+++.. .++|++.+|.+||+|||++|+++|++ .+|++.+|+..++   .. +.||++||||+||+++.+|+ . .+++
T Consensus        92 R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~-rdr~  168 (223)
T 3ld9_A           92 RREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-C-KNGY  168 (223)
T ss_dssp             HHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC---------------
T ss_pred             HHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-c-cCcc
Confidence            999874 58999999999999999999999997 4788888987764   34 79999999999999999999 3 4677


Q ss_pred             ch--HHHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 025041          200 EH--LEFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       200 e~--~~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l~~  246 (259)
                      |.  .+|++++++.|.++.+   .++++||+++|+|+| ++|.+.|.+.+..
T Consensus       169 E~~~~e~~~rv~~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l~~~lg~  219 (223)
T 3ld9_A          169 EFADMEFYYRVRDGFYDIAKKNPHRCHVITDKSETYDI-DDINFVHLEVIKV  219 (223)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHHHHHHhh
Confidence            75  7999999999998753   379999999999999 9999999988754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=100.00  E-value=1.4e-32  Score=236.25  Aligned_cols=192  Identities=27%  Similarity=0.400  Sum_probs=162.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-H
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-S  130 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-~  130 (259)
                      +.+|++|+|+|+|||||||+++.|++.|.. |+.++..++|. +++.|+.+++++.++..+++.+..++|+++|+++. .
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~-~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~  100 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPG-GVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVL  100 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTT-TCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCC
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCC-CCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            458999999999999999999999999998 88888888887 67899999999887655888889899999998764 4


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhc-CCCCCHHHH---HhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc--h
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWC---KAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE--H  201 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~---~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e--~  201 (259)
                      .+.+++++|.+||+|||++|+++|++ .++++.+++   ..+....+.||++|||++|++++.+|+..|+   ++++  .
T Consensus       101 ~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~  180 (229)
T 4eaq_A          101 KVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQED  180 (229)
T ss_dssp             CCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHHH
T ss_pred             HHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhhh
Confidence            56788999999999999999999997 467776644   3444566899999999999999999997663   5564  4


Q ss_pred             HHHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHHh
Q 025041          202 LEFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQVT  245 (259)
Q Consensus       202 ~~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l~  245 (259)
                      .++++++.+.|.++.+   ..+++||+++++|+|+++|.+.|.+.+.
T Consensus       181 ~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~~l~  227 (229)
T 4eaq_A          181 LKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLE  227 (229)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence            6899999999998864   3689999999999999999999998774

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=100.00  E-value=1.7e-31  Score=223.21  Aligned_cols=199  Identities=39%  Similarity=0.713  Sum_probs=165.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      ++|++|+|+|++||||||+++.|+++|  .|++++.+.+|.++++.|+.+++++.+++.+.+....++|.++|+++...+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i   79 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFI   79 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999988  356777778887567889999999876666777777778888887665667


Q ss_pred             HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC-CCCcchHHHHHHHHHH
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG-GERYEHLEFQRKVAQC  211 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R-~d~~e~~~~~~rv~~~  211 (259)
                      .+.+.+|.+||+|||+++.++|+.+.|++.+|+..+....+.||++|||++|++++.+   .| .++++..++++++...
T Consensus        80 ~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d~~e~~~~~~rl~~~  156 (204)
T 2v54_A           80 QEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEEIYEDVTFQQKVLQE  156 (204)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSSTTCCSHHHHHHHHH
T ss_pred             HHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCcccccHHHHHHHHHHH
Confidence            7888889999999999999999876678888887766555789999999999999987   23 2455555788999888


Q ss_pred             HHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC
Q 025041          212 YQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWS  258 (259)
Q Consensus       212 y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~~~~~~~~~  258 (259)
                      |.++..   ..+++||+++++++++++|.+.+...+...  ++||.+||+
T Consensus       157 y~~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l~~~l~~~--~~~~~~~~~  204 (204)
T 2v54_A          157 YKKMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAIHTV--TGPVGQLWM  204 (204)
T ss_dssp             HHHHHTTCSSCEEEECTTSCHHHHHHHHHHHHHHHHHHC--CSCCCBTTC
T ss_pred             HHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhc--cCChhhhcC
Confidence            987654   468999999999999999999999988743  449999996

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=100.00  E-value=6.8e-31  Score=221.00  Aligned_cols=206  Identities=46%  Similarity=0.913  Sum_probs=169.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      +.+|++|+|+|++||||||+++.|+++|+..|+++..+++|..+++.++.+++++..+..+.+....++|.++|+++...
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   85 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPL   85 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999889998888888656788888999887655677776667777777765556


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCC-CCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQ  210 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~-gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~  210 (259)
                      +.+.+.+|.+||+|||++++++|+... |++.+|+..+....+.||++|||++|++++.+|+..|.++++..++++++.+
T Consensus        86 i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~~~~~~~~~~~~~~  165 (215)
T 1nn5_A           86 IKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALR  165 (215)
T ss_dssp             HHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCSHHHHHHHHH
T ss_pred             HHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccchHHHHHHHHH
Confidence            778888899999999999999997654 6778888777655678999999999999999999755466766678888888


Q ss_pred             HHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC
Q 025041          211 CYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWS  258 (259)
Q Consensus       211 ~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~~~~~~~~~  258 (259)
                      .|..+..   ..+++||++.++++++++|.+.+...+.. ...+||..||+
T Consensus       166 ~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~~-~~~~~~~~~~~  215 (215)
T 1nn5_A          166 CFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIAT-ATEKPLGELWK  215 (215)
T ss_dssp             HHHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHH-GGGSCCCBTTC
T ss_pred             HHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhh-ccCcchhhhcC
Confidence            8987654   36899999999999999999999988875 56788899995

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=100.00  E-value=2.1e-31  Score=223.84  Aligned_cols=204  Identities=41%  Similarity=0.776  Sum_probs=171.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      +.+|++|+|+|++||||||+++.|+++|+..++++..+++|..+++.|+.+++++..+..+++.....+|.++++++++.
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNE   86 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999889988778888766788999998887666677777777777777665556


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCC-CCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQ  210 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~-gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~  210 (259)
                      +.+.+..|..||+|||+++.++|+..+ +++.+|+..++.....||++|||++|++++.+|+..|.++++..++++++..
T Consensus        87 i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r~~~~~~~~~~~~  166 (212)
T 2wwf_A           87 IKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIYE  166 (212)
T ss_dssp             HHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSSTTCSHHHHHHHHH
T ss_pred             HHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcccccHHHHHHHHHH
Confidence            778888899999999999888887644 6777888766655578999999999999999999866566776788889888


Q ss_pred             HHHhhh-CCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC
Q 025041          211 CYQMLR-DSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWS  258 (259)
Q Consensus       211 ~y~~l~-~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~~~~~~~~~  258 (259)
                      .|.++. ...+++||+++++++++++|.+.+...   ...|+||..||+
T Consensus       167 ~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~  212 (212)
T 2wwf_A          167 TYKHFAHEDYWINIDATRKIEDIHNDIVKEVTKI---KVEPEEFNFLWS  212 (212)
T ss_dssp             HGGGGTTCTTEEEEECSSCHHHHHHHHHHHHTTS---CCSCBCCCBTTC
T ss_pred             HHHHHhccCCEEEEECCCCHHHHHHHHHHHHHHh---ccCCCchhhhcC
Confidence            897765 346899999999999999999999877   578999999995

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.96  E-value=1.7e-27  Score=199.47  Aligned_cols=188  Identities=26%  Similarity=0.435  Sum_probs=149.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC---CCCHHHHHHHHHHhHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS---HLDDHTIHLLFSANRWEKR  129 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~---~~~~~~~~ll~~a~r~~~~  129 (259)
                      .+|++|+|+|++||||||+++.|+++++..| .++..++|.     ++.+++++.++.   .+++....+++.++|+.+.
T Consensus         2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~   75 (213)
T 2plr_A            2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEWNS-----SDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRY   75 (213)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEETTC-----CCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecCCc-----HHHHHHHHhccccccCCCHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999998777 676667663     345566655432   4677666677777777654


Q ss_pred             -HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcC-CCC--CC-------
Q 025041          130 -SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGG-YGG--ER-------  198 (259)
Q Consensus       130 -~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~-~R~--d~-------  198 (259)
                       ..+.+.+..|.+||+|||+++.++|+..+|.+.+|+..+....+.||++|||++|++++.+|+. .|+  ++       
T Consensus        76 ~~~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~  155 (213)
T 2plr_A           76 ERYILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADI  155 (213)
T ss_dssp             HHTHHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTT
T ss_pred             HHHHHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccccccccc
Confidence             4567788889999999999999999866778888888776666789999999999999999987 665  34       


Q ss_pred             ------cch-HHHHHHHHHHHHhhhC-CCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 025041          199 ------YEH-LEFQRKVAQCYQMLRD-SSWKIIDACQSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       199 ------~e~-~~~~~rv~~~y~~l~~-~~~~vIDa~~s~eev~~~I~~~i~~~l~~  246 (259)
                            ++. .++++++...|.++.+ ..+++||+++++++++++|.+.+..++..
T Consensus       156 ~~~~d~~e~~~~~~~r~~~~~~~~~~~~~~~~Id~~~~~e~v~~~I~~~l~~~~~~  211 (213)
T 2plr_A          156 FPGLSPEEGFLKYQGLITEVYDKLVKDENFIVIDGTKTPKEIQIQIRKFVGELIDN  211 (213)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHHTTTTTCEEEETTSCHHHHHHHHHHHHHHHHHT
T ss_pred             ccccchhhhHHHHHHHHHHHHHHHHhhCCEEEEECCCCHHHHHHHHHHHHHHHhhc
Confidence                  333 4788888888887653 36899999999999999999999877653

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.95  E-value=3.6e-26  Score=188.82  Aligned_cols=186  Identities=33%  Similarity=0.494  Sum_probs=149.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-HHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-SMMEA  134 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-~~i~~  134 (259)
                      ++|+|+|++||||||+++.|++++...|+.++..++|. +++.|+.+++++.++ .+++....+++.++++.++ ..+.+
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~-~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~i~~   78 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPG-GTKVGEVLREILLTE-ELDERTELLLFEASRSKLIEEKIIP   78 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSC-SSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC-CCchHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999988889888888876 567888888887654 5777666666677777665 45678


Q ss_pred             HHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHH
Q 025041          135 KLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQ  210 (259)
Q Consensus       135 ~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~  210 (259)
                      .+.+|..||+|||++++++|++ .++.+.+++..+.   .....||++|||++|++++.+|+..| ++++..++++++.+
T Consensus        79 ~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r-~~~~~~~~~~~~~~  157 (195)
T 2pbr_A           79 DLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK-NRFENKEFLEKVRK  157 (195)
T ss_dssp             HHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT-TCCCCHHHHHHHHH
T ss_pred             HHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc-CccchHHHHHHHHH
Confidence            8889999999999999988875 3566666665433   22347999999999999999998754 45556678888888


Q ss_pred             HHHhhhC--CCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          211 CYQMLRD--SSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       211 ~y~~l~~--~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                      .|.++..  ..+++||++++++++.++|.+.+...+
T Consensus       158 ~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~~~l  193 (195)
T 2pbr_A          158 GFLELAKEEENVVVIDASGEEEEVFKEILRALSGVL  193 (195)
T ss_dssp             HHHHHHHHSTTEEEEETTSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhCCCEEEEECCCCHHHHHHHHHHHHHHHh
Confidence            8887652  368999999999999999999887554

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=99.90  E-value=5.1e-26  Score=191.17  Aligned_cols=184  Identities=25%  Similarity=0.387  Sum_probs=138.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChH-HHHHHHHHhCC-C--CCCHHHHHHHHHHhHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSV-GQMISAYLSNQ-S--HLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~-g~~ir~~l~~~-~--~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      ++|+|+|++||||||+++.|++.|...|+++..+++|..+++. ++.++.++... +  ..++....+++.++|+.+...
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHT   80 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHHH
Confidence            4899999999999999999999998888888777776544444 66677665421 1  125666777788888765555


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCC------CHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC------
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGI------DIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG------  196 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl------~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~------  196 (259)
                      +.+.+..|++||+|||+++.++|+...+.      ..+|+..+.   ...+.||++|||++|++++.+|+..|+      
T Consensus        81 i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~  160 (214)
T 1gtv_A           81 IQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGR  160 (214)
T ss_dssp             HHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEBBEE
T ss_pred             HHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHccccccccc
Confidence            67777788999999999999998863221      135555543   244689999999999999999987652      


Q ss_pred             --CCcch-HHHHHHHHHHHHhhhC----CCeEEEcCCCCHHHHHHHHHHH
Q 025041          197 --ERYEH-LEFQRKVAQCYQMLRD----SSWKIIDACQSIEDVEKQLKEI  239 (259)
Q Consensus       197 --d~~e~-~~~~~rv~~~y~~l~~----~~~~vIDa~~s~eev~~~I~~~  239 (259)
                        +++|. .++++++.+.|.++.+    ..+++||++++++++.++|.+.
T Consensus       161 ~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~~~~v~~~i~~~  210 (214)
T 1gtv_A          161 ARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAPP  210 (214)
T ss_dssp             EEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEBHHHHHHHHC--
T ss_pred             ccccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHhcCC
Confidence              23453 6899999999987753    3679999999999999998653

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.89  E-value=6.3e-25  Score=191.49  Aligned_cols=188  Identities=18%  Similarity=0.170  Sum_probs=122.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE--------------------EEecCCCCChHHHHHHHH-HhCC
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE--------------------LWRFPDRTTSVGQMISAY-LSNQ  109 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~--------------------~~~~p~~~~~~g~~ir~~-l~~~  109 (259)
                      +..++++|+|+|++||||||+++.|+++|..  ..++                    ..++|. +++    +++. +.++
T Consensus        20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~l~~--~~~i~ep~~~~~~~~~~~~~~~~~~~~~p~-g~~----~~~~~~~~~   92 (263)
T 1p5z_B           20 EGTRIKKISIEGNIAAGKSTFVNILKQLCED--WEVVPEPVARWCNVQSTQDEFEELTMSQKN-GGN----VLQMMYEKP   92 (263)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHTTTGGGCTT--EEEECCCHHHHTSCCCC------------C-CCC----HHHHHHHCH
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHHhcCC--CEEEecchhhhhcccccccccccccccccc-CCc----hHHHHHhCc
Confidence            4467899999999999999999999998853  2221                    122333 222    2332 3322


Q ss_pred             CCCCHHHHHHH-HHHhHHH------HH-HHHHHHHhcCCeEEEcccccchhhhhcC-CCCC-----HHHHHhhhccC---
Q 025041          110 SHLDDHTIHLL-FSANRWE------KR-SMMEAKLKAGTTLIVDRYSYSGVAFSSA-KGID-----IEWCKAPEIGL---  172 (259)
Q Consensus       110 ~~~~~~~~~ll-~~a~r~~------~~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~-----~~~~~~~~~~~---  172 (259)
                      ..++.....++ +.+.|++      ++ ..+.+++..|.+||+|||++++.+|++. ++.+     .+|+..+....   
T Consensus        93 ~~~~~~~~~~~l~~~~r~~~~~~~~~l~~~i~~~l~~g~~Vi~Dry~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~~~~  172 (263)
T 1p5z_B           93 ERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQS  172 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSGGGGSSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHhhhhhccCCCceEEecceeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcc
Confidence            12222222222 4444433      11 1223455678899999999999999874 3322     45665554332   


Q ss_pred             CCCCEEEEEeCCHHHHHhhcCCCCCC---cchHHHHHHHHHHHHhh-------------hCCCeEEEcCCCCHHHHHHHH
Q 025041          173 LAPDSVLYLDIPPEKAAERGGYGGER---YEHLEFQRKVAQCYQML-------------RDSSWKIIDACQSIEDVEKQL  236 (259)
Q Consensus       173 ~~PdlvI~Ld~~~e~~~~R~~~R~d~---~e~~~~~~rv~~~y~~l-------------~~~~~~vIDa~~s~eev~~~I  236 (259)
                      +.||++|||++|++++.+|+..|+..   ....++++++...|..+             .+..+++||+++++++|+++|
T Consensus       173 ~~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~~~eev~~~I  252 (263)
T 1p5z_B          173 LELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESL  252 (263)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHH
T ss_pred             CCCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCCCHHHHHHHH
Confidence            47999999999999999998755322   23468888888877654             124589999999999999999


Q ss_pred             HHHHHHHHh
Q 025041          237 KEIVLDQVT  245 (259)
Q Consensus       237 ~~~i~~~l~  245 (259)
                      .+.|.+.+.
T Consensus       253 ~~~l~~~l~  261 (263)
T 1p5z_B          253 VEKVKEFLS  261 (263)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.89  E-value=5.9e-25  Score=188.28  Aligned_cols=190  Identities=14%  Similarity=0.128  Sum_probs=108.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCC--ChHHHHHHHHH-hCCCCCCHHHHHHHHHHhHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRT--TSVGQMISAYL-SNQSHLDDHTIHLLFSANRWEK  128 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~--~~~g~~ir~~l-~~~~~~~~~~~~ll~~a~r~~~  128 (259)
                      ..+|.+|+|+|++||||||+++.|+..    +..+....+|...  +..++.+++.+ ..+..+........+..++..+
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~   92 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSH   92 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHHHHHHH
Confidence            467999999999999999999999876    3356666655310  01122222221 1110110001111111222222


Q ss_pred             H-HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhh--------ccCCCCCEEEEEeCCHHHHHhhcCCCC---
Q 025041          129 R-SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPE--------IGLLAPDSVLYLDIPPEKAAERGGYGG---  196 (259)
Q Consensus       129 ~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~--------~~~~~PdlvI~Ld~~~e~~~~R~~~R~---  196 (259)
                      . ..+.+.+..|..|++|||.+++.+|+.. +++.+++..++        ...+.||++|||++|++++.+|+..|+   
T Consensus        93 ~~~~i~~~l~~~r~v~~dry~~s~~ayq~~-~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~  171 (230)
T 2vp4_A           93 TAPTNKKLKIMERSIFSARYCFVENMRRNG-SLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSE  171 (230)
T ss_dssp             HCCCCSSEEEEESCHHHHHHTHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHHHCCGG
T ss_pred             HhccccCceeecCCccccHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHHHHHcCCcc
Confidence            1 1123334557788999999999999974 77766554332        146789999999999999999986543   


Q ss_pred             CCcchHHHHHHHHHHHHhhhC-------CCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 025041          197 ERYEHLEFQRKVAQCYQMLRD-------SSWKIIDACQSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       197 d~~e~~~~~~rv~~~y~~l~~-------~~~~vIDa~~s~eev~~~I~~~i~~~l~~  246 (259)
                      ++.+..+|++++...|.++..       .++++||+++++|+|.++|.+.+...+..
T Consensus       172 e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~~~~~  228 (230)
T 2vp4_A          172 ESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESSIFDA  228 (230)
T ss_dssp             GTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC-------------------
T ss_pred             cccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHHHhhc
Confidence            222345899999999988742       35899999999999999999998877654

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=99.89  E-value=5.6e-24  Score=191.73  Aligned_cols=163  Identities=16%  Similarity=0.142  Sum_probs=117.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCC--CChHH-HHHHHHHhC-----CCCCCHH-HH-----
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDR--TTSVG-QMISAYLSN-----QSHLDDH-TI-----  117 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~--~~~~g-~~ir~~l~~-----~~~~~~~-~~-----  117 (259)
                      +.+|++|+|||++||||||+++.|+++|...+ .++.++||..  ++.++ +.|++++.+     .+.+++. ++     
T Consensus         4 ~~~~~fI~~EG~dGaGKTT~~~~La~~L~~~~-~v~~trEPg~~w~~~~g~e~ir~~~~d~~~~~~~~~~~~~~e~~~~~   82 (334)
T 1p6x_A            4 MVTIVRIYLDGVYGIGKSTTGRVMASAASGGS-PTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQGNLAVDDAALITAH   82 (334)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHSGGGCSS-CEEEECCCHHHHHTSSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhccCC-cEEEEeCCCCccccccchHHHHHHHHhhhhccccccCHHHHHHHHHH
Confidence            45789999999999999999999999998643 4777888862  13445 677777631     2346653 22     


Q ss_pred             -HHHHH---HhHHHHHHHH------HHHHhcCCeEEEcccccchhh-hhcC----CCCCHHHHHhhhcc---CCCCCEEE
Q 025041          118 -HLLFS---ANRWEKRSMM------EAKLKAGTTLIVDRYSYSGVA-FSSA----KGIDIEWCKAPEIG---LLAPDSVL  179 (259)
Q Consensus       118 -~ll~~---a~r~~~~~~i------~~~l~~g~~VI~DR~~~s~~a-y~~~----~gl~~~~~~~~~~~---~~~PdlvI  179 (259)
                       +++|+   +.|.++...+      .|++..|.+||+|||++|+++ |+.+    .+++.+.+..+...   .+.||++|
T Consensus        83 lQLlf~a~la~ra~~~~~~i~~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~~yq~g~l~~~~i~~l~~~~~~~~~PDLtI  162 (334)
T 1p6x_A           83 YQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGDMSMCALMAMVATLPREPQGGNIV  162 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCEEEECCCSCCSEEEEEESCTHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCCCTTEEEE
T ss_pred             HHHHHHhHHHHHHHHHHHHHhhhccCccccCCCEEEEeCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHccCCCCCCEEE
Confidence             23454   3565654322      267778999999999999997 4432    36776666655432   35799999


Q ss_pred             EEeCCHHHHHhhcCCCC---CCcchHHHHHHHHHHHHhhh
Q 025041          180 YLDIPPEKAAERGGYGG---ERYEHLEFQRKVAQCYQMLR  216 (259)
Q Consensus       180 ~Ld~~~e~~~~R~~~R~---d~~e~~~~~~rv~~~y~~l~  216 (259)
                      |||+||+++++|+..|+   +++ +.+|++++++.|.++.
T Consensus       163 yLd~~pe~~l~RI~~RgR~~Eri-~~eyl~~vr~~Y~~l~  201 (334)
T 1p6x_A          163 VTTLNVEEHIRRLRTRARIGEQI-DITLIATLRNVYFMLV  201 (334)
T ss_dssp             EEECCHHHHHHHHHHHSCTTCCC-CHHHHHHHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHhcCCCcccC-CHHHHHHHHHHHHHHH
Confidence            99999999999986553   333 4699999999998864

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=99.86  E-value=2.3e-22  Score=181.03  Aligned_cols=161  Identities=15%  Similarity=0.146  Sum_probs=108.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCC--CChHH-HHHHHHHhC-----CCCCCHH-H-----HH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDR--TTSVG-QMISAYLSN-----QSHLDDH-T-----IH  118 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~--~~~~g-~~ir~~l~~-----~~~~~~~-~-----~~  118 (259)
                      .++++|+|||++||||||+++.|+++|...|  ++.++||..  ++..| +.|++++.+     .+.+++. +     ..
T Consensus         2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~~~g--v~~trEPg~~w~~~~g~~~Lr~~yld~~r~~~~~~~~~ea~lf~~~~   79 (331)
T 1e2k_A            2 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDD--IVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSA   79 (331)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC----CC--EEEECCCHHHHHTTSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             CccEEEEEECCCCCCHHHHHHHHHHHhhhCC--EEEEeCCCCcccccccHHHHHHHHhChhhhccccCCHHHHHHHHHHH
Confidence            5789999999999999999999999998776  777888851  01123 677777653     2346665 2     22


Q ss_pred             HHHHHhHHHH----H-HHHHH------HHhcCCeEEEcccccchh-hhhcC----CCCCHHHHHhhhcc---CCCCCEEE
Q 025041          119 LLFSANRWEK----R-SMMEA------KLKAGTTLIVDRYSYSGV-AFSSA----KGIDIEWCKAPEIG---LLAPDSVL  179 (259)
Q Consensus       119 ll~~a~r~~~----~-~~i~~------~l~~g~~VI~DR~~~s~~-ay~~~----~gl~~~~~~~~~~~---~~~PdlvI  179 (259)
                      .++.+.|+.+    . ..+++      .++.|.+||+|||++|++ +|+.+    .+++.+.+..+...   ...||+++
T Consensus        80 qL~fa~r~l~~a~r~~~~i~p~l~~~~~l~~g~~VI~DR~~~Ss~~~yq~~~~~~g~l~~~~~~~l~~~~~~~~ppdlt~  159 (331)
T 1e2k_A           80 QITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIV  159 (331)
T ss_dssp             HHHHHHHHHHHHHHHGGGEEEECC----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTCCCCCTTCEEE
T ss_pred             HHHHHhhhHHHHHHHHHHHhHHhhccccccCCCEEEEecCchHhHHHHHHHHHhcCCCCHHHHHHHHHhcccCCCCeEEE
Confidence            2333434322    1 11222      235789999999999998 68753    36776666555432   23468999


Q ss_pred             EEeCCHHHHHhhcCCCC---CCcchHHHHHHHHHHHHhhh
Q 025041          180 YLDIPPEKAAERGGYGG---ERYEHLEFQRKVAQCYQMLR  216 (259)
Q Consensus       180 ~Ld~~~e~~~~R~~~R~---d~~e~~~~~~rv~~~y~~l~  216 (259)
                      ++|+||+++++|+..|+   +++ ..+|++++++.|.++.
T Consensus       160 lldl~pe~~l~RI~~Rgr~~Eri-~~~yl~rvr~~Y~~l~  198 (331)
T 1e2k_A          160 LGALPEDRHIDRLAKRQRPGERL-DLAMLAAIRRVYGLLA  198 (331)
T ss_dssp             EEECCHHHHHHHHHHSCCTTCCC-CHHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHhcCCCcccC-CHHHHHHHHHHHHHHH
Confidence            99999999999987553   443 5799999999998763

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=99.86  E-value=4.8e-22  Score=179.42  Aligned_cols=162  Identities=12%  Similarity=0.071  Sum_probs=117.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHH-HHHHHHHhhCCCeEEEEecCCCC---ChHH-HHHHHHHhC-----CCCCCHH------
Q 025041           52 DSRGALVVLEGLDRCGKTSQC-SRLLSYLEGLGHSVELWRFPDRT---TSVG-QMISAYLSN-----QSHLDDH------  115 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla-~~L~~~l~~~g~~v~~~~~p~~~---~~~g-~~ir~~l~~-----~~~~~~~------  115 (259)
                      +.+|++|+|||++||||||++ +.|++.|...|. ++.++||. +   +.+| +.|++++.+     .+.+++.      
T Consensus         9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g~-vv~trEPg-g~w~t~~g~e~lr~i~l~~~~~~~~~~s~~~a~~~~   86 (341)
T 1osn_A            9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNR-ILLIGEPL-SYWRNLAGEDAICGIYGTQTRRLNGDVSPEDAQRLT   86 (341)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHTTTTSGGG-EEEECCCH-HHHTTBTTBCHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred             cCCceEEEEeCCCCCCHHHHHHHHHHHHHhhCCc-EEEEeCCC-ccccCcccHHHHHHHHhchhhhcccccchhhhhHHH
Confidence            467899999999999999999 999999987773 78889996 3   4556 778887753     3456653      


Q ss_pred             HHHHHHHHhHHHHH-HHHH------------HHHhcCCeEEEcccccchhhhhc-C----CCCCHHHHHhhhc---cCCC
Q 025041          116 TIHLLFSANRWEKR-SMME------------AKLKAGTTLIVDRYSYSGVAFSS-A----KGIDIEWCKAPEI---GLLA  174 (259)
Q Consensus       116 ~~~ll~~a~r~~~~-~~i~------------~~l~~g~~VI~DR~~~s~~ay~~-~----~gl~~~~~~~~~~---~~~~  174 (259)
                      +...++.+.++.+. +++.            +++..|.+||+|||++|+.+|+. +    ++++.+.+..++.   ....
T Consensus        87 ~e~ql~fa~p~~~la~R~~~h~~~~i~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~r~~~g~l~~~~~~~L~~~~~~~~~  166 (341)
T 1osn_A           87 AHFQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMSPAALPGLLFTLPAEPP  166 (341)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHTSCCCCSCCSCCCSSCCEEEEEESCTHHHHTHHHHHHHHHTSSCGGGHHHHHTTCCCCCS
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhccccccccCCCCeEEEeCCccHHHHHHHhhhhhcCCCCHHHHHHHHHhhhcCCC
Confidence            33323333343332 2222            34567889999999999997764 3    4677666655543   3357


Q ss_pred             CCEEEEEeCCHHHHHhhcCCCC---CCcchHHHHHHHHHHHHhhh
Q 025041          175 PDSVLYLDIPPEKAAERGGYGG---ERYEHLEFQRKVAQCYQMLR  216 (259)
Q Consensus       175 PdlvI~Ld~~~e~~~~R~~~R~---d~~e~~~~~~rv~~~y~~l~  216 (259)
                      ||++||||+||+++.+|+..|+   |++| .+|++++++.|.+++
T Consensus       167 PDltI~Ld~~pe~~l~RI~~RgR~~Erie-~~yl~rvr~~Y~~l~  210 (341)
T 1osn_A          167 GTNLVVCTVSLPSHLSRVSKRARPGETVN-LPFVMVLRNVYIMLI  210 (341)
T ss_dssp             CCEEEEEECCHHHHHHHCC------CCCC-HHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCHHHHHHHHHhhCCCcccCC-HHHHHHHHHHHHHHH
Confidence            9999999999999999998664   4555 699999999998864

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=99.86  E-value=4.4e-22  Score=181.47  Aligned_cols=162  Identities=15%  Similarity=0.146  Sum_probs=109.2

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCC--CChHH-HHHHHHHhC-----CCCCCHH-H-----
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDR--TTSVG-QMISAYLSN-----QSHLDDH-T-----  116 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~--~~~~g-~~ir~~l~~-----~~~~~~~-~-----  116 (259)
                      .+.++++|+|||++||||||+++.|+++|...|  ++.++||..  ++..| +.|++++.+     .+.+++. +     
T Consensus        45 ~~~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g--vv~trEPg~~w~~~~gn~~Lr~~yld~~r~~~~~~~~~ea~l~~a  122 (376)
T 1of1_A           45 KMPTLLRVYIDGPHGMGKTTTTQLLVALGSRDD--IVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMT  122 (376)
T ss_dssp             -CCEEEEEEECSSTTSSHHHHHHHHHC----CC--EEEECCCHHHHHTTSSSCHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhhhCC--EEEEeCCCCccccccchHHHHHHHhChhhhccccCCHHHHHHHHH
Confidence            356899999999999999999999999998777  777888851  01123 567777653     3456665 3     


Q ss_pred             HH-HHHHHhHHH----HH-HHHHH------HHhcCCeEEEcccccchh-hhhcC----CCCCHHHHHhhhcc---CCCCC
Q 025041          117 IH-LLFSANRWE----KR-SMMEA------KLKAGTTLIVDRYSYSGV-AFSSA----KGIDIEWCKAPEIG---LLAPD  176 (259)
Q Consensus       117 ~~-ll~~a~r~~----~~-~~i~~------~l~~g~~VI~DR~~~s~~-ay~~~----~gl~~~~~~~~~~~---~~~Pd  176 (259)
                      .. ++|+ .|+.    +. +.+++      .++.|.+||+|||++|++ +|+.+    .+++.+.+..+...   ...||
T Consensus       123 ~~QL~fa-~r~~~~a~r~~~~i~paL~~~~al~~g~iVI~DR~~~Ss~~ayq~~~y~~g~l~~~~i~~l~~~~~~~~ppd  201 (376)
T 1of1_A          123 SAQITMG-MPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGT  201 (376)
T ss_dssp             HHHHHHH-HHHHHHHHHHGGGEEEEC-----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTCCCCCTTC
T ss_pred             HHHHHHh-ccchHHHHHHHHHhhhhhcccccccCCCeEEEeeChhHHHHHHHHHHHhcCCCCHHHHHHHHHhcccCCCCe
Confidence            12 2333 3321    11 12222      346789999999999998 68753    36777666555432   23467


Q ss_pred             EEEEEeCCHHHHHhhcCCCC---CCcchHHHHHHHHHHHHhhh
Q 025041          177 SVLYLDIPPEKAAERGGYGG---ERYEHLEFQRKVAQCYQMLR  216 (259)
Q Consensus       177 lvI~Ld~~~e~~~~R~~~R~---d~~e~~~~~~rv~~~y~~l~  216 (259)
                      +++++|+||+++++|+..|+   |++ ..+|++++++.|.++.
T Consensus       202 lt~Lldl~pe~~l~RI~~RgR~~Eri-~leyl~rVr~~Y~~la  243 (376)
T 1of1_A          202 NIVLGALPEDRHIDRLAKRQRPGERL-DLAMLAAIRRVYGLLA  243 (376)
T ss_dssp             EEEEEECCHHHHHHHHHHSCCTTCCC-CHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCHHHHHHHHHhcCCCcccC-CHHHHHHHHHHHHHHH
Confidence            99999999999999987553   443 5799999999998763

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=99.85  E-value=3.7e-23  Score=177.93  Aligned_cols=185  Identities=12%  Similarity=0.110  Sum_probs=117.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCC--------------hHHHHHHH-HHhCCCCCCHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTT--------------SVGQMISA-YLSNQSHLDDHTIH  118 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~--------------~~g~~ir~-~l~~~~~~~~~~~~  118 (259)
                      +|++|+|+|++||||||+++.|+++|+.  .  ..+.+|....              ..|..+++ ++.++... .....
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~--~--~~~~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   75 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYPE--W--HVATEPVATWQNIQAAGNQKACTAQSLGNLLDMMYREPARW-SYTFQ   75 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTT--S--EEECCCGGGTSCCC------------CCCHHHHHHHSHHHH-HHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcCC--C--eeeecchhhhccccccccccccccccCCchHHHHHhCcccc-hhHHH
Confidence            5789999999999999999999999853  2  3345554211              01222223 23222100 11222


Q ss_pred             HHHHHhHHHHH-----HH----HHHHHhcCCeEEEcccccchhhhhcCCC------CCHHHHHhhhccC---CCCCEEEE
Q 025041          119 LLFSANRWEKR-----SM----MEAKLKAGTTLIVDRYSYSGVAFSSAKG------IDIEWCKAPEIGL---LAPDSVLY  180 (259)
Q Consensus       119 ll~~a~r~~~~-----~~----i~~~l~~g~~VI~DR~~~s~~ay~~~~g------l~~~~~~~~~~~~---~~PdlvI~  180 (259)
                      ..+...|+...     ..    +.+.+..|..||+|||+++..+|+.+..      +..+|+..+....   +.||++||
T Consensus        76 ~~~ll~r~~~~~~~~~~~~~~~~~~~l~~~r~vi~Dr~~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~~~~~~pd~~i~  155 (241)
T 2ocp_A           76 TFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIY  155 (241)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHSCSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSHHHHCCCEEEE
T ss_pred             HHHHHHHHHHHHHHHhhhhcccCCceEeeeCCchhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEE
Confidence            23333443321     01    1223346778889999999999986431      1234555444333   48999999


Q ss_pred             EeCCHHHHHhhcCCCCCCcc---hHHHHHHHHHHHHhhh-------------CCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          181 LDIPPEKAAERGGYGGERYE---HLEFQRKVAQCYQMLR-------------DSSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       181 Ld~~~e~~~~R~~~R~d~~e---~~~~~~rv~~~y~~l~-------------~~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                      |++|++++.+|+..|+...+   ..+|++++...|..+.             ...+++||++.++++|.+++.+++...
T Consensus       156 l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~~~i~~i~~~i  234 (241)
T 2ocp_A          156 LQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREV  234 (241)
T ss_dssp             EECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCHHHHHHHHHHH
Confidence            99999999999876543333   3689999999998752             247899999999888777776666543

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.84  E-value=4.3e-20  Score=151.84  Aligned_cols=169  Identities=11%  Similarity=0.105  Sum_probs=112.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHH-HHHHhCC----CCCCHH--HHHHHHHHhHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMI-SAYLSNQ----SHLDDH--TIHLLFSANRWEK  128 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~i-r~~l~~~----~~~~~~--~~~ll~~a~r~~~  128 (259)
                      ++|+|+|++||||||+++.|+++|+..|+++..+..   +..+++.+ ++.+..+    ..+.+.  ...+.+++++   
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   75 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY---GDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKG---   75 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH---HHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHH---
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC---ChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHH---
Confidence            589999999999999999999999988887776531   11222222 1221111    123333  3333333332   


Q ss_pred             HHHHHHHH--hcCCeEEEcccccchhhhh--cCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhh-cCC--CC--CCc
Q 025041          129 RSMMEAKL--KAGTTLIVDRYSYSGVAFS--SAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAER-GGY--GG--ERY  199 (259)
Q Consensus       129 ~~~i~~~l--~~g~~VI~DR~~~s~~ay~--~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R-~~~--R~--d~~  199 (259)
                         +.+.+  ..|..||+|||  +.+.|+  ...+++.+++..+     .||++|||++|++++.+| +..  |+  +.+
T Consensus        76 ---i~~~l~~~~~~~vi~d~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~  145 (194)
T 1nks_A           76 ---IAEEARAGGEGYLFIDTH--AVIRTPSGYLPGLPSYVITEI-----NPSVIFLLEADPKIILSRQKRDTTRNRNDYS  145 (194)
T ss_dssp             ---HHHHHHHTCSSEEEEEEC--SEEEETTEEEESSCHHHHHHH-----CCSEEEEEECCHHHHHHHHHHCTTTCCCCCC
T ss_pred             ---HHHHhhccCCCEEEECCc--hhhccccccccCCCHHHHHhc-----CCCEEEEEeCCHHHHHHHHHhhcccCCCCcc
Confidence               45666  67899999998  345565  2345555666542     489999999999998866 544  53  222


Q ss_pred             c--hHHHHHHHHHHHHhhh----CCCeEEE-cCCCCHHHHHHHHHHHH
Q 025041          200 E--HLEFQRKVAQCYQMLR----DSSWKII-DACQSIEDVEKQLKEIV  240 (259)
Q Consensus       200 e--~~~~~~rv~~~y~~l~----~~~~~vI-Da~~s~eev~~~I~~~i  240 (259)
                      +  ..++++++.+.|.++.    ...+++| |+++++++++++|.+.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~d~~~~~e~v~~~I~~~l  193 (194)
T 1nks_A          146 DESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence            2  3466677778887653    2467899 99999999999998865

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.83  E-value=8.3e-20  Score=147.67  Aligned_cols=161  Identities=23%  Similarity=0.252  Sum_probs=114.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK  135 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~  135 (259)
                      ++|+|+|++||||||+++.|++.++   +.++  ...    .+..   .. .     .   ...+|     .    ....
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~---~~~i--~~d----~~~~---~~-~-----~---~~~~~-----~----~~~~   51 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELK---YPII--KGS----SFEL---AK-S-----G---NEKLF-----E----HFNK   51 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHC---CCEE--ECC----CHHH---HT-T-----C---HHHHH-----H----HHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC---Ceee--cCc----cccc---ch-h-----H---HHHHH-----H----HHHH
Confidence            4899999999999999999999984   4333  211    1110   00 0     0   00111     1    1224


Q ss_pred             HhcCCeEEEcccccchhhhhcC-C---CCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 025041          136 LKAGTTLIVDRYSYSGVAFSSA-K---GIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC  211 (259)
Q Consensus       136 l~~g~~VI~DR~~~s~~ay~~~-~---gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~  211 (259)
                      +..|..||+||+.++.++|+.. .   .+...+...+....+.||++|||++|++++.+|+..|+..++..++++++.+.
T Consensus        52 l~~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~  131 (173)
T 3kb2_A           52 LADEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILEL  131 (173)
T ss_dssp             HTTCCSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHH
T ss_pred             HHhCCCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence            5678889999999999999742 1   22345555555556789999999999999999998765455556788888888


Q ss_pred             HHhhhC---CCeEEEcCC-CCHHHHHHHHHHHHHHHHhh
Q 025041          212 YQMLRD---SSWKIIDAC-QSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       212 y~~l~~---~~~~vIDa~-~s~eev~~~I~~~i~~~l~~  246 (259)
                      |.++..   ..+++||++ .++++++++|.+.+......
T Consensus       132 ~~~~~~~~~~~~~~id~~~~~~~ev~~~I~~~~~~~~~~  170 (173)
T 3kb2_A          132 YREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLVELEHHH  170 (173)
T ss_dssp             HHHHHHTCSSCEEEEETTTSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHhCCCcc
Confidence            987643   368999998 59999999999999876554

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.83  E-value=5.9e-20  Score=152.51  Aligned_cols=175  Identities=14%  Similarity=0.176  Sum_probs=111.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK  135 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~  135 (259)
                      ++|+|+|++||||||+++.|+++|+.   .  .+.+|..+..+   ++.++.++..+ +....+.+.++++.+   +.+.
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~---~--~~~e~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~r~~~---~~~~   68 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGY---E--IFKEPVEENPY---FEQYYKDLKKT-VFKMQIYMLTARSKQ---LKQA   68 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCC---E--EECCCGGGCTT---HHHHTTCHHHH-HHHHHHHHHHHHHHH---HC--
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCC---c--EEcccccccHH---HHHHHhCcccc-chhHHHHHHHHHHHH---HHHh
Confidence            47999999999999999999999953   2  23455322222   33333322111 111223445555443   3445


Q ss_pred             HhcCCeEEEcccccchhhhhcC---CC--CCH--HHHHh----hhccC-------CCCCEEEEEeCCHHHHHhhcCCCCC
Q 025041          136 LKAGTTLIVDRYSYSGVAFSSA---KG--IDI--EWCKA----PEIGL-------LAPDSVLYLDIPPEKAAERGGYGGE  197 (259)
Q Consensus       136 l~~g~~VI~DR~~~s~~ay~~~---~g--l~~--~~~~~----~~~~~-------~~PdlvI~Ld~~~e~~~~R~~~R~d  197 (259)
                      +..|. ||+||+++++++|+..   .|  .+.  .++..    +...+       ..||++|||++|++++.+|+..|+.
T Consensus        69 ~~~~~-vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r  147 (205)
T 2jaq_A           69 KNLEN-IIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGR  147 (205)
T ss_dssp             ----C-EEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTC
T ss_pred             hccCC-EEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence            55665 9999999999988752   12  121  12221    21222       6799999999999999999876644


Q ss_pred             Ccch---HHHHHHHHHHHHhhh-----CCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          198 RYEH---LEFQRKVAQCYQMLR-----DSSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       198 ~~e~---~~~~~rv~~~y~~l~-----~~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                      ..+.   .++++++.+.|..+.     ....++||++.++++++++|.+.+...
T Consensus       148 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~  201 (205)
T 2jaq_A          148 SEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSI  201 (205)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred             hhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence            3332   367778877776532     236899999999999999999988654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.81  E-value=7.8e-19  Score=145.04  Aligned_cols=171  Identities=17%  Similarity=0.230  Sum_probs=113.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE-----ecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW-----RFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW  126 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~-----~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~  126 (259)
                      +.++++|+|+|++||||||+++.|+++++   +.++..     ..+..+++.|+.+++++.++.......   ++     
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~-----   74 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG---YTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLET---VL-----   74 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHH---HH-----
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHH---HH-----
Confidence            45789999999999999999999999984   444321     111124567788888776543332211   11     


Q ss_pred             HH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc--
Q 025041          127 EK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE--  200 (259)
Q Consensus       127 ~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e--  200 (259)
                      .. ...+.+.+..|..||+|+|+.+.           ++...+...+..||++|||++|++++.+|+..|+   ++++  
T Consensus        75 ~~~~~~i~~~~~~~~~vi~d~~~~~~-----------~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~  143 (196)
T 2c95_A           75 DMLRDAMVAKVNTSKGFLIDGYPREV-----------QQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDN  143 (196)
T ss_dssp             HHHHHHHHHHTTTCSCEEEESCCCSH-----------HHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGS
T ss_pred             HHHHHHHHhccccCCcEEEeCCCCCH-----------HHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCC
Confidence            11 13345556678899999876531           2333333334679999999999999999986542   3333  


Q ss_pred             hHHHHHHHHHHHHhh-------hC-CCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          201 HLEFQRKVAQCYQML-------RD-SSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       201 ~~~~~~rv~~~y~~l-------~~-~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                      ...+.+++...|...       .. ..+++||++.++++++++|.+.+...+
T Consensus       144 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~~  195 (196)
T 2c95_A          144 EETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDALL  195 (196)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHhc
Confidence            234555665544321       11 356789999999999999999887653

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.80  E-value=3e-18  Score=145.77  Aligned_cols=169  Identities=15%  Similarity=0.197  Sum_probs=110.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE----Ee-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL----WR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW  126 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~----~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~  126 (259)
                      ..++++|+|.|||||||||||+.|+++|+   +..+.    ++ +...++++|..+++++..+..+++....-+. .   
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g---~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv-~---   98 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH---FNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALL-K---   98 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHHC---CEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHH-H---
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHC---CceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHH-H---
Confidence            46889999999999999999999999994   43331    11 2233577888888887766544443221111 1   


Q ss_pred             HHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC---Ccc-hH
Q 025041          127 EKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE---RYE-HL  202 (259)
Q Consensus       127 ~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d---~~e-~~  202 (259)
                         +.+.........+|+|+||.+.           +....+......|+++|+|++|.+++.+|+..|..   |.+ +.
T Consensus        99 ---~~l~~~~~~~~g~ilDGfPRt~-----------~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~  164 (217)
T 3umf_A           99 ---EAMIKLVDKNCHFLIDGYPREL-----------DQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNE  164 (217)
T ss_dssp             ---HHHHHHTTTCSEEEEETBCSSH-----------HHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHH
T ss_pred             ---HHHhhccccccCcccccCCCcH-----------HHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCH
Confidence               1122222345578999999743           22333444556799999999999999999987632   211 22


Q ss_pred             H-HHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          203 E-FQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       203 ~-~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      + +.+|+ +.|.+.        . ...++.||+++++|+|+++|.+.|.+
T Consensus       165 e~i~~Rl-~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k  213 (217)
T 3umf_A          165 ETIVKRF-RTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK  213 (217)
T ss_dssp             HHHHHHH-HHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            3 33333 334331        1 24689999999999999999998864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.79  E-value=2.7e-18  Score=142.06  Aligned_cols=171  Identities=15%  Similarity=0.146  Sum_probs=111.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE-----ecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW-----RFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWE  127 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~-----~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~  127 (259)
                      .++++|+|+|++||||||+++.|+++++   +.++..     ..+..+++.+..+++++..+.........-+       
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~-------   79 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG---FTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLEL-------   79 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHH-------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHH-------
Confidence            4678999999999999999999999985   444321     1121245667777777765433332111000       


Q ss_pred             HHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC---Ccch--H
Q 025041          128 KRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE---RYEH--L  202 (259)
Q Consensus       128 ~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d---~~e~--~  202 (259)
                      ....+.+.+..|..||+|+++.+..           ....+...++.||++|||++|++++.+|+..|+.   +++.  .
T Consensus        80 ~~~~i~~~~~~~~~vi~dg~~~~~~-----------~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~  148 (199)
T 2bwj_A           80 LKEAMVASLGDTRGFLIDGYPREVK-----------QGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTK  148 (199)
T ss_dssp             HHHHHHHHTTSCSCEEEETCCSSHH-----------HHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHH
T ss_pred             HHHHHhcccccCccEEEeCCCCCHH-----------HHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHH
Confidence            0123445555688999999876431           1112223345799999999999999999876542   3332  3


Q ss_pred             HHHHHHHHHHHhh-------hC-CCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          203 EFQRKVAQCYQML-------RD-SSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       203 ~~~~rv~~~y~~l-------~~-~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                      ++.+++...|...       .. ..+++||++.++++++++|.+.+...+
T Consensus       149 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~~  198 (199)
T 2bwj_A          149 TIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSIF  198 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHhc
Confidence            5556655544332       11 346899999999999999999887654

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.78  E-value=1.5e-18  Score=147.01  Aligned_cols=180  Identities=18%  Similarity=0.212  Sum_probs=112.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWRF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      .++++|+|+|++||||||+++.|+++|+..++++. .++. +..+++.|..+++++..+..... .....+..++..   
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~-~~~~~~~~~~~~---   78 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD-EIVVNMVKERLR---   78 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCH-HHHHHHHHHHHH---
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCH-HHHHHHHHHHHh---
Confidence            46789999999999999999999999964322210 0111 11245778888888776533332 222222222221   


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC--------------
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG--------------  196 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~--------------  196 (259)
                        .+.+..+.+|| |+|+.+.           +++..+......||++|||++|++++.+|+..|.              
T Consensus        79 --~~~~~~~~~vi-dg~~~~~-----------~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~  144 (222)
T 1zak_A           79 --QPDAQENGWLL-DGYPRSY-----------SQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYS  144 (222)
T ss_dssp             --SHHHHHTCEEE-ESCCCSH-----------HHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSS
T ss_pred             --hccccCCcEEE-ECCCCCH-----------HHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccC
Confidence              23333444555 9876532           2222333344679999999999999999986542              


Q ss_pred             --------CCcc------hHHHHHHHHHHHHh---hh---CCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcC
Q 025041          197 --------ERYE------HLEFQRKVAQCYQM---LR---DSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKG  250 (259)
Q Consensus       197 --------d~~e------~~~~~~rv~~~y~~---l~---~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~  250 (259)
                              ++++      .....+++...|.+   +.   +..+++||+++++++|+++|.+.+...+..+...
T Consensus       145 pp~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~~~~~ev~~~I~~~l~~~l~~~~~~  218 (222)
T 1zak_A          145 PPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEM  218 (222)
T ss_dssp             CCCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEECCCCHHHHHHHHHHHHHhhccccccc
Confidence                    0111      11334444444442   21   2358899999999999999999999888766543

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.77  E-value=6.2e-18  Score=143.81  Aligned_cols=163  Identities=15%  Similarity=0.131  Sum_probs=107.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ecC-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RFP-DRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~p-~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      ++|+|+|++||||||+++.|++++   |+.++..    +++ ..+++.|+.+++++.++. +.+...  +        ..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~l---g~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~-~~~~~~--~--------~~   66 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKY---SLAHIESGGIFREHIGGGTELGKKAKEFIDRGD-LVPDDI--T--------IP   66 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH---TCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTC-CCCHHH--H--------HH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh---CCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCC-cCcHHH--H--------HH
Confidence            579999999999999999999998   4555544    443 225678888888876543 322110  0        11


Q ss_pred             HHHHHHhc--CCeEEEcccccchhhhhcCCCCCHHHHHhh-hccCCCCCEEEEEeCCHHHHHhhcCCCC---C-------
Q 025041          131 MMEAKLKA--GTTLIVDRYSYSGVAFSSAKGIDIEWCKAP-EIGLLAPDSVLYLDIPPEKAAERGGYGG---E-------  197 (259)
Q Consensus       131 ~i~~~l~~--g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~-~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d-------  197 (259)
                      .+.+.+.+  |..||+|+|+.+. . +      ..++..+ ......||++|||++|++++.+|+..|+   +       
T Consensus        67 ~i~~~l~~~~g~~vIlDg~~~~~-~-~------~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~  138 (223)
T 2xb4_A           67 MVLETLESKGKDGWLLDGFPRNT-V-Q------AQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNN  138 (223)
T ss_dssp             HHHHHHHHHCTTCEEEESCCCSH-H-H------HHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCB
T ss_pred             HHHHHHhcccCCeEEEeCCcCCH-H-H------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccc
Confidence            23444544  8889999876531 1 0      1222222 1233579999999999999999986553   1       


Q ss_pred             ------------------Ccc-----hHH---------HHHHH---HH---HHHhhh---CCCeEEEcCCCCHHHHHHHH
Q 025041          198 ------------------RYE-----HLE---------FQRKV---AQ---CYQMLR---DSSWKIIDACQSIEDVEKQL  236 (259)
Q Consensus       198 ------------------~~e-----~~~---------~~~rv---~~---~y~~l~---~~~~~vIDa~~s~eev~~~I  236 (259)
                                        +++     ..+         |++++   .+   .|.+++   ...+++||+++++++|+++|
T Consensus       139 ~~~~~p~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i  218 (223)
T 2xb4_A          139 IFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTL  218 (223)
T ss_dssp             TTCGGGCCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHH
T ss_pred             cccCCCccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHH
Confidence                              111     112         44442   55   777654   24689999999999999999


Q ss_pred             HHHH
Q 025041          237 KEIV  240 (259)
Q Consensus       237 ~~~i  240 (259)
                      .+.+
T Consensus       219 ~~~l  222 (223)
T 2xb4_A          219 LAQL  222 (223)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9875

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.77  E-value=2.4e-17  Score=135.48  Aligned_cols=172  Identities=23%  Similarity=0.266  Sum_probs=105.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE-------ecCCCCChHHHHHHHHHhCCCCCCHH-HHHHHHHHhH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW-------RFPDRTTSVGQMISAYLSNQSHLDDH-TIHLLFSANR  125 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~-------~~p~~~~~~g~~ir~~l~~~~~~~~~-~~~ll~~a~r  125 (259)
                      ++++|+|+|++||||||+++.|++.++   +.++..       .++. ++..++.+++++.++...... ...+++..  
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~--   75 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYG---YTHLSAGELLRDERKNP-DSQYGELIEKYIKEGKIVPVEITISLLKRE--   75 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHCT-TSTTHHHHHHHHHTTCCCCHHHHHHHHHHH--
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHhcc-CChHHHHHHHHHHCCCcCCHHHHHHHHHHH--
Confidence            578999999999999999999999884   444321       1122 345677777777654322221 22222211  


Q ss_pred             HHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc-h
Q 025041          126 WEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE-H  201 (259)
Q Consensus       126 ~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e-~  201 (259)
                         +......+..+..||+|+++.+...++       .|...+. ....||++|||++|++++.+|+..|+   ++.+ +
T Consensus        76 ---~~~~~~~~~~~~~vi~dg~~~~~~~~~-------~~~~~~~-~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~  144 (196)
T 1tev_A           76 ---MDQTMAANAQKNKFLIDGFPRNQDNLQ-------GWNKTMD-GKADVSFVLFFDCNNEICIERCLERGKSSGRSDDN  144 (196)
T ss_dssp             ---HHHHHHHCTTCCEEEEESCCCSHHHHH-------HHHHHHT-TTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCC
T ss_pred             ---HHhhhccccCCCeEEEeCCCCCHHHHH-------HHHHHhc-ccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCC
Confidence               111122334578999999988654432       2322222 23568999999999999999986442   2222 2


Q ss_pred             HHHHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          202 LEFQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       202 ~~~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      .+...+....|...        . ...+++||++.++++++++|.+.+..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  194 (196)
T 1tev_A          145 RESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  194 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            23222222222221        1 13578999999999999999998764

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=99.76  E-value=1.7e-19  Score=159.82  Aligned_cols=163  Identities=14%  Similarity=0.100  Sum_probs=113.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      ..+++|+|||.|||||||+++.|.+.|+.+|+.|+.+.+|+     ++.++    .  .+-          .|      +
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt-----~eE~~----~--~yl----------~R------~  136 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPT-----ETERG----Q--WYF----------QR------Y  136 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCC-----HHHHT----S--CTT----------HH------H
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcC-----hHHHh----c--hHH----------HH------H
Confidence            46899999999999999999999999999999999888886     23221    1  110          11      2


Q ss_pred             HHHH-hcCCeEEEcccccchhhhhcC-CCCCH----HHHHhhh------ccCCCCCEEEEEeCCHHHHHhhcCCCC---C
Q 025041          133 EAKL-KAGTTLIVDRYSYSGVAFSSA-KGIDI----EWCKAPE------IGLLAPDSVLYLDIPPEKAAERGGYGG---E  197 (259)
Q Consensus       133 ~~~l-~~g~~VI~DR~~~s~~ay~~~-~gl~~----~~~~~~~------~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d  197 (259)
                      .+.+ ++|.+||+|||+|+.++|+.. .+++.    .++..++      ...+.|++.|||++|+++..+|+..|.   +
T Consensus       137 ~~~LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~  216 (304)
T 3czq_A          137 VATFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPL  216 (304)
T ss_dssp             HTTCCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTT
T ss_pred             HHhcccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCcc
Confidence            3445 679999999999999999874 34443    2333322      223589999999999999999986441   1


Q ss_pred             C---c-----chHHHHHHHHHHHHhhh------CCCeEEEcCCCCH---HHHHHHHHHHHHH
Q 025041          198 R---Y-----EHLEFQRKVAQCYQMLR------DSSWKIIDACQSI---EDVEKQLKEIVLD  242 (259)
Q Consensus       198 ~---~-----e~~~~~~rv~~~y~~l~------~~~~~vIDa~~s~---eev~~~I~~~i~~  242 (259)
                      .   +     +..+++.+..++|.++.      ..+|++||++...   ..|.+.|.+.|..
T Consensus       217 k~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l~~  278 (304)
T 3czq_A          217 KIWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKLDY  278 (304)
T ss_dssp             TGGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHCCC
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHHhh
Confidence            1   1     12355566666676542      1489999998644   4555555555443

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.75  E-value=2.7e-17  Score=138.82  Aligned_cols=164  Identities=23%  Similarity=0.311  Sum_probs=103.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      |+|+|.|||||||+|||+.|+++++   +..+.+    + +...+++.|..++.++..+.-+++...           ..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g---~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv-----------~~   66 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKG---FVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLI-----------IA   66 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHH-----------HH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC---CeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHH-----------HH
Confidence            5799999999999999999999994   433321    1 111235566666666665543333211           12


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHH-hhhccCCCCCEEEEEeCCHHHHHhhcCCCC-------------
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCK-APEIGLLAPDSVLYLDIPPEKAAERGGYGG-------------  196 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~-~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~-------------  196 (259)
                      .+...+.+.+.+|+|+||.+.-  |.      +.+. .+......||++|+|++|.+++.+|+..|.             
T Consensus        67 lv~~~l~~~~~~ilDGfPRt~~--Qa------~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~  138 (206)
T 3sr0_A           67 LIEEVFPKHGNVIFDGFPRTVK--QA------EALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKY  138 (206)
T ss_dssp             HHHHHCCSSSCEEEESCCCSHH--HH------HHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTT
T ss_pred             HHHHhhccCCceEecCCchhHH--HH------HHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeec
Confidence            2344455556689999997532  11      2222 223445679999999999999999986541             


Q ss_pred             ----------CCc-chHH-HHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          197 ----------ERY-EHLE-FQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       197 ----------d~~-e~~~-~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                                .+- ++.+ ..+|+ +.|.+.        . ...++.||+++++++|+++|.++|.+
T Consensus       139 ~pp~~g~~l~~r~DD~~e~i~~Rl-~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e  204 (206)
T 3sr0_A          139 NPPPPGVKVIQREDDKPEVIKKRL-EVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD  204 (206)
T ss_dssp             BCCCTTCCCBCCGGGSHHHHHHHH-HHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred             cCCCCCceecccCCCCHHHHHHHH-HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence                      011 1223 33343 344331        1 14678999999999999999998753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.74  E-value=6e-17  Score=136.93  Aligned_cols=163  Identities=16%  Similarity=0.156  Sum_probs=98.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE------ecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW------RFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWE  127 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~------~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~  127 (259)
                      ++++|+|+|++||||||+++.|+++|   |+.++..      ..+. +++.|+.+++++..+.........         
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l---~~~~i~~d~li~~~~~~-~t~~g~~i~~~~~~g~~~~~~~~~---------   70 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY---GLAHLSTGDMLREAIKN-GTKIGLEAKSIIESGNFVGDEIVL---------   70 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH---CCEEEEHHHHHHHHHHT-C--CCHHHHHHHHHTCCCCHHHHH---------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh---CceEEehhHHHHHHHHc-CCHHHHHHHHHHHCCCcCCHHHHH---------
Confidence            56899999999999999999999999   4555432      1222 344566677766544322221110         


Q ss_pred             HHHHHHHHHh---cCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCCHHHHHhhcCCCC-------
Q 025041          128 KRSMMEAKLK---AGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIPPEKAAERGGYGG-------  196 (259)
Q Consensus       128 ~~~~i~~~l~---~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~-------  196 (259)
                        ..+.+.+.   .|..||+|+|+.+. . +      .+++.. +......||++|||++|++++.+|+..|.       
T Consensus        71 --~~i~~~l~~~~~~~~~i~dg~~~~~-~-~------~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~  140 (217)
T 3be4_A           71 --GLVKEKFDLGVCVNGFVLDGFPRTI-P-Q------AEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGR  140 (217)
T ss_dssp             --HHHHHHHHTTTTTTCEEEESCCCSH-H-H------HHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCC
T ss_pred             --HHHHHHHhccccCCCEEEeCCCCCH-H-H------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccC
Confidence              11223332   36779999887642 1 1      123332 22233579999999999999999986542       


Q ss_pred             -------------------CCcch--HHH----HHHHHHHHHh-------hh-CCCeEEEcCCCCHHHHHHHHHHH
Q 025041          197 -------------------ERYEH--LEF----QRKVAQCYQM-------LR-DSSWKIIDACQSIEDVEKQLKEI  239 (259)
Q Consensus       197 -------------------d~~e~--~~~----~~rv~~~y~~-------l~-~~~~~vIDa~~s~eev~~~I~~~  239 (259)
                                         ++++.  .++    .+++...+..       .. ...+++||+++++++|+++|.+.
T Consensus       141 ~y~~~~~pp~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~  216 (217)
T 3be4_A          141 IYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKI  216 (217)
T ss_dssp             EEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHH
T ss_pred             ccccccCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhh
Confidence                               12211  112    2233222111       11 13688999999999999999875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.73  E-value=1.8e-16  Score=133.91  Aligned_cols=169  Identities=15%  Similarity=0.144  Sum_probs=105.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e--cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R--FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW  126 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~--~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~  126 (259)
                      .+|++|+|+|++||||||+++.|+++++   +.++..    +  .+. +++.|+.+++++..+......... .+...+ 
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~~~~~~-~~~~g~~i~~~~~~g~~~~~~~~~-~~l~~~-   75 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFH---AAHLATGDMLRSQIAK-GTQLGLEAKKIMDQGGLVSDDIMV-NMIKDE-   75 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHT-TCHHHHHHHHHHHTTCCCCHHHHH-HHHHHH-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcC---ceEEehhHHHHHHHHc-CChHHHHHHHHHHCCCcCCHHHHH-HHHHHH-
Confidence            3678999999999999999999999984   444432    2  122 567788888887765433322111 111111 


Q ss_pred             HHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhh-hccCCCCCEEEEEeCCHHHHHhhcCCCC---------
Q 025041          127 EKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAP-EIGLLAPDSVLYLDIPPEKAAERGGYGG---------  196 (259)
Q Consensus       127 ~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~-~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---------  196 (259)
                           +......|..+|+|+|+.+. . +.      +.+..+ ......||++|||++|++++.+|+..|.         
T Consensus        76 -----l~~~~~~~~~~i~dg~~~~~-~-~~------~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y  142 (220)
T 1aky_A           76 -----LTNNPACKNGFILDGFPRTI-P-QA------EKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSY  142 (220)
T ss_dssp             -----HHHCGGGGSCEEEESCCCSH-H-HH------HHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEE
T ss_pred             -----HHhccccCCCeEEeCCCCCH-H-HH------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCcc
Confidence                 11111245568899976532 1 10      112221 2234579999999999999999986441         


Q ss_pred             ---------------------CCcc--hHHHHHHHHHHHHhhh---------CCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          197 ---------------------ERYE--HLEFQRKVAQCYQMLR---------DSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       197 ---------------------d~~e--~~~~~~rv~~~y~~l~---------~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                                           ++.+  ...+.+++.. |.+..         ...+++||+++++++|+++|.+.+.
T Consensus       143 ~~~~~pp~~~~~d~~~~~~l~~r~dd~~~~~~~rl~~-~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  218 (220)
T 1aky_A          143 HKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAA-YHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG  218 (220)
T ss_dssp             ETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHH-HHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             ccccCCCcccccccccccccccCCCCCHHHHHHHHHH-HHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence                                 1121  2345556643 43321         1368899999999999999998774

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.73  E-value=9e-17  Score=133.86  Aligned_cols=171  Identities=18%  Similarity=0.120  Sum_probs=104.8

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhH
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANR  125 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r  125 (259)
                      ...++++|+|+|++||||||+++.|++.++   +.++..    ++ ...+++.|+.+++++.++..... .....+..++
T Consensus        16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~---~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~-~~~~~~~~~~   91 (201)
T 2cdn_A           16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLG---IPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS-DLTNELVDDR   91 (201)
T ss_dssp             CCCSCCEEEEECCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCH-HHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccH-HHHHHHHHHH
Confidence            456789999999999999999999999984   444432    11 11245667777777765432222 1111111221


Q ss_pred             HHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchH-H
Q 025041          126 WEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHL-E  203 (259)
Q Consensus       126 ~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~-~  203 (259)
                      .      .. ...|..||+|+++.+. ..       .+++.. +......||++|||++|++++.+|+..|+..-+.. .
T Consensus        92 ~------~~-~~~~~~vIldg~~~~~-~~-------~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~  156 (201)
T 2cdn_A           92 L------NN-PDAANGFILDGYPRSV-EQ-------AKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDV  156 (201)
T ss_dssp             T------TS-GGGTTCEEEESCCCSH-HH-------HHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHH
T ss_pred             H------hc-ccCCCeEEEECCCCCH-HH-------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHH
Confidence            1      11 1345568999876532 11       122222 22223568999999999999999987643111122 3


Q ss_pred             HHHHHHHHHHhh------hCCCeEEEcCCCCHHHHHHHHHHHH
Q 025041          204 FQRKVAQCYQML------RDSSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       204 ~~~rv~~~y~~l------~~~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                      +.+++...+...      ....+++||+++++++++++|.+.+
T Consensus       157 ~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~~~eev~~~I~~~l  199 (201)
T 2cdn_A          157 ILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRAL  199 (201)
T ss_dssp             HHHHHHHHHHHTTTHHHHTTTTEEEEECCSCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHH
Confidence            444554433321      1246889999999999999998865

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.73  E-value=3.2e-16  Score=135.09  Aligned_cols=168  Identities=18%  Similarity=0.198  Sum_probs=109.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW  126 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~  126 (259)
                      +.++++|+|+|++||||||+++.|+++++   +.++..    +. ...+++.|+.+++++..+.........        
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g---~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~--------   94 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHC---YCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL--------   94 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHH--------
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHhC---CeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHH--------
Confidence            35789999999999999999999999884   443321    21 333567888888888765433332111        


Q ss_pred             HHHHHHHHHH---hcCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCCHHHHHhhcCCCCC-----
Q 025041          127 EKRSMMEAKL---KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIPPEKAAERGGYGGE-----  197 (259)
Q Consensus       127 ~~~~~i~~~l---~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d-----  197 (259)
                         ..+...+   ..+..+|+|+|+.+..  +.      ..+.. +......||.+|+|++|++++.+|+..|..     
T Consensus        95 ---~~~~~~l~~~~~~~~~ildg~p~~~~--q~------~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g  163 (243)
T 3tlx_A           95 ---SLVDEKLKTPQCKKGFILDGYPRNVK--QA------EDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSG  163 (243)
T ss_dssp             ---HHHHHHTTSGGGSSEEEEESCCCSHH--HH------HHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT
T ss_pred             ---HHHHHHHhcccccCCEEecCCCCcHH--HH------HHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccC
Confidence               0112222   2367799999876421  11      12222 223346799999999999999999876520     


Q ss_pred             -------------------------Cc-c-hHHHHHHHHHHHHhhh--------CCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          198 -------------------------RY-E-HLEFQRKVAQCYQMLR--------DSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       198 -------------------------~~-e-~~~~~~rv~~~y~~l~--------~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                                               +. + ...+.+|+..++.+..        ...++.||+++++++|+++|.+.+.
T Consensus       164 ~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  242 (243)
T 3tlx_A          164 RIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID  242 (243)
T ss_dssp             EEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             cccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence                                     11 1 2345556554443321        1358899999999999999998774

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.73  E-value=2.9e-16  Score=130.74  Aligned_cols=169  Identities=17%  Similarity=0.260  Sum_probs=104.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-------cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-------FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSAN  124 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-------~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~  124 (259)
                      ..++++|+|+|++||||||+++.|++.+   |+.++...       .+. ++..++.+++++.++. +.+....      
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~---g~~~i~~d~~~~~~~~~~-~~~~~~~i~~~~~~g~-~~~~~~~------   80 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY---SFVHLSAGDLLRAEQGRA-GSQYGELIKNCIKEGQ-IVPQEIT------   80 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS---SCEEEEHHHHHHHHHHST-TCSCHHHHHHHHHTTC-CCCHHHH------
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHc---CceEEeHHHHHHHHHhcc-CCHHHHHHHHHHHcCC-cCCHHHH------
Confidence            3456899999999999999999999987   44443211       122 4566777777776443 3322110      


Q ss_pred             HHHH-HHHHHHHHhcC-CeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCc
Q 025041          125 RWEK-RSMMEAKLKAG-TTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERY  199 (259)
Q Consensus       125 r~~~-~~~i~~~l~~g-~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~  199 (259)
                       ... ...+.+.+..| +.+|+|+++.+.           +....++..+..||++|||++|++++.+|+..|+   .+.
T Consensus        81 -~~~l~~~i~~~l~~g~~~~i~dg~~~~~-----------~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~  148 (203)
T 1ukz_A           81 -LALLRNAISDNVKANKHKFLIDGFPRKM-----------DQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRS  148 (203)
T ss_dssp             -HHHHHHHHHHHHHTTCCEEEEETCCCSH-----------HHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCT
T ss_pred             -HHHHHHHHHhhhccCCCeEEEeCCCCCH-----------HHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCC
Confidence             011 12345566666 578888875421           1111222334569999999999999999986542   111


Q ss_pred             -chH-HHHHHHHHHHHh-------hhC-CCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          200 -EHL-EFQRKVAQCYQM-------LRD-SSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       200 -e~~-~~~~rv~~~y~~-------l~~-~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                       +.. .+.+++...+..       ... ..+++||+++++++++++|.+.+...
T Consensus       149 ~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~~  202 (203)
T 1ukz_A          149 DDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS  202 (203)
T ss_dssp             TCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence             122 233333222211       122 35678999999999999999988754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.72  E-value=7.3e-17  Score=132.33  Aligned_cols=163  Identities=17%  Similarity=0.199  Sum_probs=101.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e-c-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R-F-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW  126 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~-~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~  126 (259)
                      .+|++|+|+|++||||||+++.|++.++   +.++..    + . +. +++.|..+++++..+.........        
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~---~~~i~~d~~~~~~~~~-~~~~~~~i~~~~~~g~~~~~~~~~--------   69 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELG---FKKLSTGDILRDHVAR-GTPLGERVRPIMERGDLVPDDLIL--------   69 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHT---CEEECHHHHHHHHHHT-TCHHHHHHHHHHHTTCCCCHHHHH--------
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHHHHHHHc-CChHHHHHHHHHHcCCcCCHHHHH--------
Confidence            5789999999999999999999999884   444321    1 1 22 455677777777654322221110        


Q ss_pred             HHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhh-hccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc--
Q 025041          127 EKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAP-EIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE--  200 (259)
Q Consensus       127 ~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~-~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e--  200 (259)
                         ..+.+.+..+  +|+|+++.+..  +      ...+..+ ......||++|||++|++++.+|+..|.   ++++  
T Consensus        70 ---~~~~~~l~~~--~i~dg~~~~~~--~------~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~  136 (186)
T 3cm0_A           70 ---ELIREELAER--VIFDGFPRTLA--Q------AEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDN  136 (186)
T ss_dssp             ---HHHHHHCCSE--EEEESCCCSHH--H------HHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCC
T ss_pred             ---HHHHHHhcCC--EEEeCCCCCHH--H------HHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCC
Confidence               1223344444  88998876421  1      0112221 2222358999999999999999987653   3332  


Q ss_pred             hHHHHHHHHHHHHh-------hhC-CCeEEEcCCCCHHHHHHHHHHHH
Q 025041          201 HLEFQRKVAQCYQM-------LRD-SSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       201 ~~~~~~rv~~~y~~-------l~~-~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                      ...+.+++...+..       ..+ ..+++||+++++++++++|.+.+
T Consensus       137 ~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l  184 (186)
T 3cm0_A          137 EETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL  184 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence            23455555443322       111 24889999999999999998875

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.72  E-value=4.5e-17  Score=133.67  Aligned_cols=168  Identities=18%  Similarity=0.286  Sum_probs=104.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE-----ecCCCCChHHHHHHHHHhCCCCCCHH-HHHHHHHHhHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW-----RFPDRTTSVGQMISAYLSNQSHLDDH-TIHLLFSANRWE  127 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~-----~~p~~~~~~g~~ir~~l~~~~~~~~~-~~~ll~~a~r~~  127 (259)
                      ++++|+|+|++||||||+++.|++.++   +.++..     ..+..+++.++.+++++..+...... ...++       
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l-------   74 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFG---WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLL-------   74 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHH-------
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhC---CeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHH-------
Confidence            457999999999999999999999984   444321     12212455677777777654322211 11111       


Q ss_pred             HHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc--hH
Q 025041          128 KRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE--HL  202 (259)
Q Consensus       128 ~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e--~~  202 (259)
                       ...+.+.  .|..||+|+++.+...+.       .|...+.. ...||++|||++|++++.+|+..|+   ++.+  ..
T Consensus        75 -~~~i~~~--~~~~vi~d~~~~~~~~~~-------~~~~~~~~-~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~  143 (194)
T 1qf9_A           75 -KNAIDAN--QGKNFLVDGFPRNEENNN-------SWEENMKD-FVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIE  143 (194)
T ss_dssp             -HHHHHTS--TTCCEEEETCCCSHHHHH-------HHHHHHTT-TCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHH
T ss_pred             -HHHHHhc--CCCCEEEeCcCCCHHHHH-------HHHHHHhc-cCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHH
Confidence             0111221  567899999877543221       12111121 2368999999999999999986542   2222  24


Q ss_pred             HHHHHHHHHHHh-------hh-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          203 EFQRKVAQCYQM-------LR-DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       203 ~~~~rv~~~y~~-------l~-~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      ++.+++...+..       .. ...+++||+++++++++++|.+.+..
T Consensus       144 ~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~  191 (194)
T 1qf9_A          144 SIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            566666554321       11 13578999999999999999998864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.72  E-value=4.8e-17  Score=133.94  Aligned_cols=168  Identities=20%  Similarity=0.209  Sum_probs=103.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH--
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR--  129 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~--  129 (259)
                      ..+|.+|+|+|++||||||+++.|++.+...|..+..++        ++.++..+.....+.+.        ++..+.  
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~--------~d~~~~~~~~~~~~~~~--------~r~~~~~~   73 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD--------GDWARTTVSEGAGFTRE--------ERLRHLKR   73 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE--------HHHHHTTTTTTCCCCHH--------HHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee--------HHHHHHHHhhccCCChh--------hHHHHHHH
Confidence            357899999999999999999999999998888776554        34444433322223321        111111  


Q ss_pred             --HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC---CCCcchHHH
Q 025041          130 --SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG---GERYEHLEF  204 (259)
Q Consensus       130 --~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R---~d~~e~~~~  204 (259)
                        ......+..|.+||+|++..    |+.    ..+++..+......|+++|||++|++++.+|+..+   ..+.+..+.
T Consensus        74 ~~~~~~~~~~~g~~vi~d~~~~----~~~----~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~  145 (186)
T 2yvu_A           74 IAWIARLLARNGVIVICSFVSP----YKQ----ARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELEN  145 (186)
T ss_dssp             HHHHHHHHHTTTCEEEEECCCC----CHH----HHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHHHhCCCEEEEeCccc----cHH----HHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhh
Confidence              11122346788999998542    211    01334333333457999999999999999997421   000000111


Q ss_pred             HHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHHHH
Q 025041          205 QRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       205 ~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~~l  244 (259)
                      +..+...|... ....++||++ .++++++++|.+.+...+
T Consensus       146 ~~~~~~~y~~~-~~~~~~Id~~~~~~~ev~~~I~~~l~~~~  185 (186)
T 2yvu_A          146 FTGITDPYEPP-ENPQLVLDTESNTIEHNVSYLYSLVKAVI  185 (186)
T ss_dssp             CHHHHSCCCCC-SSCSEEEETTTSCHHHHHHHHHHHHHHHC
T ss_pred             hhhhhhcccCC-CCCcEEEECCCCCHHHHHHHHHHHHHHhc
Confidence            22233334322 2346899997 899999999999887654

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.71  E-value=6.7e-16  Score=131.87  Aligned_cols=168  Identities=17%  Similarity=0.171  Sum_probs=105.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe----c-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR----F-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWE  127 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~----~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~  127 (259)
                      .++++|+|+|++||||||+++.|+++|+   +.++...    + ...+++.|+.+++++..+.........         
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~---------   81 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC---VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVL---------   81 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHH---------
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHH---------
Confidence            4668999999999999999999999994   4444321    1 011346677787777654333322111         


Q ss_pred             HHHHHHHHHh---cCCeEEEcccccchhhhhcCCCCCHHHHHhh-hccCCCCCEEEEEeCCHHHHHhhcCCCC-------
Q 025041          128 KRSMMEAKLK---AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAP-EIGLLAPDSVLYLDIPPEKAAERGGYGG-------  196 (259)
Q Consensus       128 ~~~~i~~~l~---~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~-~~~~~~PdlvI~Ld~~~e~~~~R~~~R~-------  196 (259)
                        ..+.+.+.   .+..+|+|||+.+.  .+.      +.+..+ ......||++|||++|++++.+|+..|.       
T Consensus        82 --~~i~~~l~~~~~~~g~ildg~~~~~--~~~------~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~  151 (233)
T 1ak2_A           82 --ELIEKNLETPPCKNGFLLDGFPRTV--RQA------EMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGR  151 (233)
T ss_dssp             --HHHHHHHTSGGGTTCEEEESCCCSH--HHH------HHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCC
T ss_pred             --HHHHHHHhcccccCcEEEeCCCCCH--HHH------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCC
Confidence              11122222   24568899987642  111      222222 2234579999999999999999986541       


Q ss_pred             -----------------------CCcc--hHHHHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          197 -----------------------ERYE--HLEFQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       197 -----------------------d~~e--~~~~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                                             ++.+  ...+.+++.. |...        . ...+++||+++++++|+++|.+.+..
T Consensus       152 ~y~~~~~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~-y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~  230 (233)
T 1ak2_A          152 SYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEA-YHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSK  230 (233)
T ss_dssp             EEBTTTBCCSSTTBCTTTCCBCEECCCCCHHHHHHHHHH-HHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             ccccccCCCccccccccccccccCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence                                   1222  2345555533 4331        1 13589999999999999999998876


Q ss_pred             H
Q 025041          243 Q  243 (259)
Q Consensus       243 ~  243 (259)
                      +
T Consensus       231 ~  231 (233)
T 1ak2_A          231 A  231 (233)
T ss_dssp             H
T ss_pred             h
Confidence            5

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.70  E-value=3.9e-16  Score=127.97  Aligned_cols=174  Identities=14%  Similarity=0.210  Sum_probs=94.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHh---HHHH-H
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSAN---RWEK-R  129 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~---r~~~-~  129 (259)
                      +|++|+|+|++||||||+++.|+++++..|+....+.       .++.+++.....+...+......+...   .++. .
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~-------~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS-------FGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMA   74 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE-------HHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe-------hHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHH
Confidence            4789999999999999999999999987774333222       245555554322111000000000000   0111 1


Q ss_pred             -HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHh-hcCC--CCCCc---chH
Q 025041          130 -SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAE-RGGY--GGERY---EHL  202 (259)
Q Consensus       130 -~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~-R~~~--R~d~~---e~~  202 (259)
                       ..+.+.. .+..||+|+++..........+++..++...     .||++|||++|++++.+ |+..  |+...   +..
T Consensus        75 ~~~i~~~~-~~~~viid~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~  148 (192)
T 1kht_A           75 GRKIAEMA-KESPVAVDTHSTVSTPKGYLPGLPSWVLNEL-----NPDLIIVVETTGDEILMRRMSDETRVRDLDTASTI  148 (192)
T ss_dssp             HHHHHHHH-TTSCEEEECCSEEEETTEEEESSCHHHHHHH-----CCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHH
T ss_pred             HHHHHhhc-cCCeEEEccceeccccccccccCcHHHHhcc-----CCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHH
Confidence             2233433 3446777876531111111123443333321     48999999999999996 8875  53221   222


Q ss_pred             HHHHHHHHHHHh----hhCCCeEEE-cCCCCHHHHHHHHHHHH
Q 025041          203 EFQRKVAQCYQM----LRDSSWKII-DACQSIEDVEKQLKEIV  240 (259)
Q Consensus       203 ~~~~rv~~~y~~----l~~~~~~vI-Da~~s~eev~~~I~~~i  240 (259)
                      +...++...|..    .....+++| |.++++++++++|.+.|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~~i~~~i  191 (192)
T 1kht_A          149 EQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL  191 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence            333344444432    223456666 45577999999998865

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.70  E-value=1.6e-16  Score=133.84  Aligned_cols=158  Identities=15%  Similarity=0.267  Sum_probs=96.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec--CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF--PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR  129 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~--p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~  129 (259)
                      +.|+|+|++||||||+++.|++++   |+.++..    ++  +. +++.|+.+++++..+........           .
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~---g~~~i~~d~~~r~~~~~-~~~~g~~i~~~~~~g~~~~~~~~-----------~   65 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKY---GIPQISTGDMLRAAVKS-GSELGKQAKDIMDAGKLVTDELV-----------I   65 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH---CCCEEEHHHHHHHHHHH-TCTTTGGGHHHHHHTCCCCHHHH-----------H
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh---CCeEEeHHHHHHHHHHc-CChHHHHHHHHHHCCCcCCHHHH-----------H
Confidence            369999999999999999999988   4555433    21  11 23344555555543322222110           0


Q ss_pred             HHHHHHHhc---CCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC----------
Q 025041          130 SMMEAKLKA---GTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG----------  196 (259)
Q Consensus       130 ~~i~~~l~~---g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~----------  196 (259)
                      ..+.+.+.+   +..+|+|+|+.+.           .....+......||++|||++|++++.+|+..|.          
T Consensus        66 ~~i~~~l~~~~~~~~~i~dg~~~~~-----------~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~  134 (214)
T 1e4v_A           66 ALVKERIAQEDCRNGFLLDGFPRTI-----------PQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYH  134 (214)
T ss_dssp             HHHHHHHTSGGGGGCEEEESCCCSH-----------HHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEE
T ss_pred             HHHHHHHhccccCCCEEEeCCCCCH-----------HHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCccc
Confidence            122233332   2468889976432           1112222233479999999999999999975431          


Q ss_pred             --------------------CCcc--hHHHHHHHHHHHHhhh-------C-------CCeEEEcCCCCHHHHHHHHHHHH
Q 025041          197 --------------------ERYE--HLEFQRKVAQCYQMLR-------D-------SSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       197 --------------------d~~e--~~~~~~rv~~~y~~l~-------~-------~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                                          ++.+  ...+.+++.. |.+..       .       ..+++||+++++++|+++|.+.+
T Consensus       135 ~~~~pp~~~~~~~~~~~~l~~r~dd~~~~~~~rl~~-y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l  213 (214)
T 1e4v_A          135 VKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVE-YHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  213 (214)
T ss_dssp             TTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHH-HHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             ccCCCCCccccccccccccccCCCCCHHHHHHHHHH-HHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence                                1221  2356666643 44321       1       35889999999999999998875

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.70  E-value=2.4e-16  Score=137.12  Aligned_cols=164  Identities=18%  Similarity=0.214  Sum_probs=105.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      .++++|+|+|++||||||+++.|++.|...|+.++.+.        ++.++..+..   +.+.....+..+.+    ..+
T Consensus         2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~--------~D~~~~~l~~---~~~~~e~~~~~~~~----~~i   66 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG--------SDLIRESFPV---WKEKYEEFIKKSTY----RLI   66 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC--------THHHHTTSSS---CCGGGHHHHHHHHH----HHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC--------chHHHHHHhh---hhHHHHHHHHHHHH----HHH
Confidence            46789999999999999999999999987788766433        1333322221   22222222222111    234


Q ss_pred             HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY  212 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y  212 (259)
                      .+.+.. ..||+|+.++..- +       .+.+..+......|+++|||++|++++.+|+..|+... +.+.++++.+.|
T Consensus        67 ~~~l~~-~~vIiD~~~~~~~-~-------~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~-~~~~l~~~~~~~  136 (260)
T 3a4m_A           67 DSALKN-YWVIVDDTNYYNS-M-------RRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKI-PNEVIKKMYEKF  136 (260)
T ss_dssp             HHHHTT-SEEEECSCCCSHH-H-------HHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSS-CHHHHHHHHHHC
T ss_pred             HHHhhC-CEEEEeCCcccHH-H-------HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCC-CHHHHHHHHHHh
Confidence            556666 7899998654211 1       12233333345678999999999999999998765332 346666666666


Q ss_pred             Hhhh-----CCCeEEEcCCC--CHHHHHHHHHHHHH
Q 025041          213 QMLR-----DSSWKIIDACQ--SIEDVEKQLKEIVL  241 (259)
Q Consensus       213 ~~l~-----~~~~~vIDa~~--s~eev~~~I~~~i~  241 (259)
                      ....     +...++||++.  +++++++.|.+.+.
T Consensus       137 e~~~~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~  172 (260)
T 3a4m_A          137 DEPGKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK  172 (260)
T ss_dssp             CCTTSSCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred             cCccccCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence            5432     23568999976  89999998887664

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.69  E-value=1.1e-16  Score=131.75  Aligned_cols=174  Identities=12%  Similarity=-0.010  Sum_probs=99.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-H
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-S  130 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-~  130 (259)
                      +.++++|+|+|++||||||+++.|+++++   +.++.          .+.+++.+.......+...........+..+ .
T Consensus         2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~---~~~i~----------~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (193)
T 2rhm_A            2 MQTPALIIVTGHPATGKTTLSQALATGLR---LPLLS----------KDAFKEVMFDGLGWSDREWSRRVGATAIMMLYH   68 (193)
T ss_dssp             CSCCEEEEEEESTTSSHHHHHHHHHHHHT---CCEEE----------HHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHcC---CeEec----------HHHHHHHHHHhcCccchHHHHHhhHHHHHHHHH
Confidence            45789999999999999999999999984   43332          1222222211101111111111111122322 3


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCc-c--hHHH
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERY-E--HLEF  204 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~-e--~~~~  204 (259)
                      .+.+.+..|..||+|+++ +... .      ...+..+......|+++|||++|++++.+|+..|.   ++. +  ..++
T Consensus        69 ~~~~~l~~g~~vi~d~~~-~~~~-~------~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~  140 (193)
T 2rhm_A           69 TAATILQSGQSLIMESNF-RVDL-D------TERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRS  140 (193)
T ss_dssp             HHHHHHHTTCCEEEEECC-CHHH-H------HHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------C
T ss_pred             HHHHHHhCCCeEEEecCC-CCHH-H------HHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCcc
Confidence            456677788899999886 2110 0      01122233345678999999999999999986542   232 1  1233


Q ss_pred             HH--HHHHHHHh---hhC-CCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 025041          205 QR--KVAQCYQM---LRD-SSWKIIDACQSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       205 ~~--rv~~~y~~---l~~-~~~~vIDa~~s~eev~~~I~~~i~~~l~~  246 (259)
                      ..  .+...|..   +.. ...++||++.+.++++++|.+.|.+.+..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~Idt~~~~~~~~~~i~~~i~~~l~~  188 (193)
T 2rhm_A          141 PADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQHLQS  188 (193)
T ss_dssp             HHHHHHHHHSCCCCCCCCCSCEEEEECSSGGGCCHHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHhcCCCccCCCCEEEEeCCCCcccCHHHHHHHHHHHHHh
Confidence            33  23333432   222 36789999887667777777777666543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.69  E-value=6.6e-16  Score=129.87  Aligned_cols=159  Identities=18%  Similarity=0.186  Sum_probs=103.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh-hCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE-GLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-  129 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~-~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-  129 (259)
                      ..+|++|+|+|++||||||+++.|++.+. ..|+.+..++        ++.++..+.....+.        .+++..++ 
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~--------~d~~r~~l~~~~~~~--------~~~r~~~~~   85 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD--------GDNIRFGLNKDLGFS--------EADRNENIR   85 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC--------HHHHTTTTTTTCCSS--------HHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC--------ChHHhhhhccccCCC--------HHHHHHHHH
Confidence            45789999999999999999999999998 6677666554        344433332111121        12222221 


Q ss_pred             ---HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhc------cCCCCCEEEEEeCCHHHHHhhcCCCCCCcc
Q 025041          130 ---SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEI------GLLAPDSVLYLDIPPEKAAERGGYGGERYE  200 (259)
Q Consensus       130 ---~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~------~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e  200 (259)
                         ..+.+.+..|.+||+| |. +  +|+.    +.+++..+..      ..+.|+++|||++|++++.+|+..      
T Consensus        86 ~~~~~~~~~l~~g~~VI~d-~~-~--~~~~----~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r------  151 (211)
T 1m7g_A           86 RIAEVAKLFADSNSIAITS-FI-S--PYRK----DRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPK------  151 (211)
T ss_dssp             HHHHHHHHHHHTTCEEEEE-CC-C--CCHH----HHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTT------
T ss_pred             HHHHHHHHHHHCCCEEEEe-cC-C--ccHH----HHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhH------
Confidence               2345667789999999 44 2  3331    1245555443      346799999999999999999621      


Q ss_pred             hHHHHHHHHHHHHhhh----------CCCeEEEcCCC-CHHHHHHHHHHHHHH
Q 025041          201 HLEFQRKVAQCYQMLR----------DSSWKIIDACQ-SIEDVEKQLKEIVLD  242 (259)
Q Consensus       201 ~~~~~~rv~~~y~~l~----------~~~~~vIDa~~-s~eev~~~I~~~i~~  242 (259)
                        .++.+.+..|..+.          ....++||++. ++++++++|.+.+..
T Consensus       152 --~~~~~~r~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~  202 (211)
T 1m7g_A          152 --GLYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT  202 (211)
T ss_dssp             --CHHHHHHHTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHhcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence              12233333332110          12358999987 999999999998864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.69  E-value=1.2e-15  Score=128.25  Aligned_cols=165  Identities=16%  Similarity=0.148  Sum_probs=100.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      +.|+|+|++||||||+++.|+++++   +.++..    +. ...+++.++.+++++..+.........           .
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~   66 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYE---IPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTI-----------G   66 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHH-----------H
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC---CcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHH-----------H
Confidence            4699999999999999999999884   444322    11 112456677777766554333321111           1


Q ss_pred             HHHHHH---hcCCeEEEcccccchhhhhcCCCCCHHHHH-hhhccCCCCCEEEEEeCCHHHHHhhcCCCC----------
Q 025041          131 MMEAKL---KAGTTLIVDRYSYSGVAFSSAKGIDIEWCK-APEIGLLAPDSVLYLDIPPEKAAERGGYGG----------  196 (259)
Q Consensus       131 ~i~~~l---~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~-~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~----------  196 (259)
                      .+...+   ..+..+|+|+|+.+... .       ..+. .+......||++|||++|++++.+|+..|.          
T Consensus        67 ~~~~~l~~~~~~~~~ildg~p~~~~~-~-------~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~  138 (216)
T 3fb4_A           67 IVHERLSKDDCQKGFLLDGFPRTVAQ-A-------DALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYH  138 (216)
T ss_dssp             HHHHHHTSGGGTTCEEEESCCCSHHH-H-------HHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEE
T ss_pred             HHHHHHhcccCCCcEEEeCCCCCHHH-H-------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccc
Confidence            112222   23667899988764211 0       1122 222234569999999999999999987760          


Q ss_pred             ----------------C----C--cchHHHHHHHHHHHHhh-------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          197 ----------------E----R--YEHLEFQRKVAQCYQML-------R-DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       197 ----------------d----~--~e~~~~~~rv~~~y~~l-------~-~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                                      .    +  .....+.+++..+....       . ...+++||+++++++|+++|.+.+.+
T Consensus       139 ~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3fb4_A          139 TIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG  214 (216)
T ss_dssp             TTTBCCSSTTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred             cccCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence                            0    0  11123444443222221       1 13589999999999999999998764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.69  E-value=9.9e-16  Score=128.80  Aligned_cols=164  Identities=16%  Similarity=0.151  Sum_probs=101.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      +.|+|+|++||||||+++.|+++++   +.++..    +. ...+++.++.+++++..+.........           .
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~   66 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYG---IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI-----------G   66 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSS---CCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHH-----------H
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHH-----------H
Confidence            4689999999999999999999874   444322    11 112456777777777654333322111           0


Q ss_pred             HHHHHH---hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC------------
Q 025041          131 MMEAKL---KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG------------  195 (259)
Q Consensus       131 ~i~~~l---~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R------------  195 (259)
                      .+...+   ..+..+|+|+|+.+.....       .+...+......||++|||++|++++.+|+..|            
T Consensus        67 ~~~~~l~~~~~~~~~ildg~p~~~~~~~-------~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~  139 (216)
T 3dl0_A           67 IVKERLGKDDCERGFLLDGFPRTVAQAE-------ALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHL  139 (216)
T ss_dssp             HHHHHHTSGGGTTCEEEESCCCSHHHHH-------HHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEET
T ss_pred             HHHHHHhcccccCCEEEeCCCCCHHHHH-------HHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCcccc
Confidence            111222   2367799999876421110       111122223457999999999999999998766            


Q ss_pred             ---------------------CCCcchHHHHHHHHHHHHh-h---h-----CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          196 ---------------------GERYEHLEFQRKVAQCYQM-L---R-----DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       196 ---------------------~d~~e~~~~~~rv~~~y~~-l---~-----~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                                           .+. ....+.+++. .|.+ .   .     ...+++||+++++++|.++|.+.+..
T Consensus       140 ~~~pp~~~~~~~~~~~~l~~r~~d-~~e~i~~rl~-~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3dl0_A          140 VFNPPKTPGICDKDGGELYQRADD-NEETVTKRLE-VNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG  214 (216)
T ss_dssp             TTBCCSSTTBCTTTCCBEECCTTC-SHHHHHHHHH-HHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred             ccCCCcccCccccccccccCCCCC-CHHHHHHHHH-HHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence                                 111 1123344443 2322 1   1     13689999999999999999998764

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.69  E-value=7e-16  Score=131.04  Aligned_cols=168  Identities=14%  Similarity=0.186  Sum_probs=103.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e--cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R--FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANR  125 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~--~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r  125 (259)
                      +.++++|+|+|++||||||+++.|++.++   +.++..    +  .+. +++.|..+++++..+......... .+..++
T Consensus         4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~~~~~~-~~~~g~~i~~~~~~g~~~~~~~~~-~~~~~~   78 (227)
T 1zd8_A            4 SARLLRAVIMGAPGSGKGTVSSRITTHFE---LKHLSSGDLLRDNMLR-GTEIGVLAKAFIDQGKLIPDDVMT-RLALHE   78 (227)
T ss_dssp             ---CCEEEEEECTTSSHHHHHHHHHHHSS---SEEEEHHHHHHHHHHH-TCHHHHHHHHHHTTTCCCCHHHHH-HHHHHH
T ss_pred             cccCcEEEEECCCCCCHHHHHHHHHHHcC---CeEEechHHHHHhhhc-CChHHHHHHHHHHcCCcCCHHHHH-HHHHHH
Confidence            35678999999999999999999999884   443321    1  112 456688888887654333322111 111111


Q ss_pred             HHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC-----C---
Q 025041          126 WEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG-----E---  197 (259)
Q Consensus       126 ~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~-----d---  197 (259)
                            +...  .+..+|+|+|+.+  .++.      +.+.    ....||++|||++|++++.+|+..|.     +   
T Consensus        79 ------l~~~--~~~~~vid~~~~~--~~~~------~~l~----~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y  138 (227)
T 1zd8_A           79 ------LKNL--TQYSWLLDGFPRT--LPQA------EALD----RAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVY  138 (227)
T ss_dssp             ------HHTC--TTSCEEEESCCCS--HHHH------HHHH----TTSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEE
T ss_pred             ------Hhcc--cCCCEEEeCCCCC--HHHH------HHHH----HhcCCCEEEEEECCHHHHHHHHHcCcCCCccCCcc
Confidence                  1110  3556888998753  2221      1121    22578999999999999999987541     1   


Q ss_pred             ----------------------Ccc-h-HHHHHHHHHHHHhhh-------C--CCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          198 ----------------------RYE-H-LEFQRKVAQCYQMLR-------D--SSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       198 ----------------------~~e-~-~~~~~rv~~~y~~l~-------~--~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                                            +.+ . ..+.+++ ..|.+..       +  ..+++||++ ++++|+++|.+.+...+
T Consensus       139 ~~~~~pp~~~~~~~~~~~~l~~r~~~~~e~~~~r~-~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~  216 (227)
T 1zd8_A          139 NIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRL-KAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKV  216 (227)
T ss_dssp             ETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHH-HHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTS
T ss_pred             ccccCCCCcccccccccccccCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhc
Confidence                                  112 2 2344444 4454321       1  358999999 99999999999987665


Q ss_pred             hh
Q 025041          245 TA  246 (259)
Q Consensus       245 ~~  246 (259)
                      ..
T Consensus       217 ~~  218 (227)
T 1zd8_A          217 PQ  218 (227)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.67  E-value=1.3e-15  Score=126.96  Aligned_cols=163  Identities=12%  Similarity=0.097  Sum_probs=97.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      .++++|+|.|++||||||+++.|++.++   +.++..+.-.  ..  ..... ...+..+....        +...+..+
T Consensus        16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg---~~~i~~d~~~--~~--~~~~~-~~~g~~~~~~~--------~~~~~~~l   79 (202)
T 3t61_A           16 RFPGSIVVMGVSGSGKSSVGEAIAEACG---YPFIEGDALH--PP--ENIRK-MSEGIPLTDDD--------RWPWLAAI   79 (202)
T ss_dssp             CCSSCEEEECSTTSCHHHHHHHHHHHHT---CCEEEGGGGC--CH--HHHHH-HHHTCCCCHHH--------HHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC---CEEEeCCcCc--ch--hhHHH-HhcCCCCCchh--------hHHHHHHH
Confidence            4578999999999999999999999984   4333221110  00  11111 12122222211        11112233


Q ss_pred             HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY  212 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y  212 (259)
                      ...+..|..||+|.....           ..+...+....+.|+++|||++|++++.+|+..|.......+..++..+.+
T Consensus        80 ~~~~~~~~~vivd~~~~~-----------~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~  148 (202)
T 3t61_A           80 GERLASREPVVVSCSALK-----------RSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLETL  148 (202)
T ss_dssp             HHHHTSSSCCEEECCCCS-----------HHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHC
T ss_pred             HHHHhcCCCEEEECCCCC-----------HHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHhc
Confidence            344467778888865431           122222333346688999999999999999987643332334443333333


Q ss_pred             Hhhh-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          213 QMLR-DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       213 ~~l~-~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      ..+. ....++||++.++++++++|.+.+..
T Consensus       149 ~~~~~~~~~~~Id~~~~~~e~~~~I~~~l~~  179 (202)
T 3t61_A          149 EDPRGEVRTVAVDVAQPLAEIVREALAGLAR  179 (202)
T ss_dssp             CCCTTSTTEEEEESSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence            3222 23678999999999999999998864

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.67  E-value=2.6e-15  Score=120.66  Aligned_cols=164  Identities=13%  Similarity=0.023  Sum_probs=94.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC-CCCHHHHHHHHHHhH--HHH-HHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS-HLDDHTIHLLFSANR--WEK-RSM  131 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~-~~~~~~~~ll~~a~r--~~~-~~~  131 (259)
                      ++|+|+|++||||||+++.| +.+   |+.++.+         ++.+++.+...+ ...............  ... ...
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~---g~~~i~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KER---GAKVIVM---------SDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARL   68 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHT---TCEEEEH---------HHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHC---CCcEEEH---------hHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHH
Confidence            68999999999999999999 555   5555432         355555443221 111111100000011  011 133


Q ss_pred             HHHHH--hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC---cchHHHHH
Q 025041          132 MEAKL--KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER---YEHLEFQR  206 (259)
Q Consensus       132 i~~~l--~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~---~e~~~~~~  206 (259)
                      +.+.+  ..+..||+|++ .+.           .....+......|+++|||++|++++.+|+..|+..   ....++.+
T Consensus        69 ~~~~l~~~~~~~vi~dg~-~~~-----------~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~  136 (179)
T 3lw7_A           69 CVEELGTSNHDLVVFDGV-RSL-----------AEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIR  136 (179)
T ss_dssp             HHHHHCSCCCSCEEEECC-CCH-----------HHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHH
T ss_pred             HHHHHHhcCCCeEEEeCC-CCH-----------HHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHH
Confidence            44555  56788999976 211           112222222347899999999999999999876421   12234444


Q ss_pred             HHHH-HHHhh---hCCCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          207 KVAQ-CYQML---RDSSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       207 rv~~-~y~~l---~~~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                      ++.. .+...   .....++||++.+++++.++|.+.+...+
T Consensus       137 r~~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~l  178 (179)
T 3lw7_A          137 RDREELKLGIGEVIAMADYIITNDSNYEEFKRRCEEVTDRVL  178 (179)
T ss_dssp             HHHHHHHHTHHHHHHTCSEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             HHHhhhccChHhHHHhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence            4321 11111   11234778888899999999999988765

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.66  E-value=5.6e-16  Score=126.51  Aligned_cols=173  Identities=14%  Similarity=0.014  Sum_probs=95.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH-HHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK-RSMM  132 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~-~~~i  132 (259)
                      ++++|+|+|++||||||+++.|+++++   +.++  ..   ....|..+++++. .+... .    .....+.+. ...+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~---~~~i--~d---~~~~g~~i~~~~~-~g~~~-~----~~~~~~~~~~~~~i   69 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLP---GSFV--FE---PEEMGQALRKLTP-GFSGD-P----QEHPMWIPLMLDAL   69 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHST---TCEE--CC---THHHHHHHHHTST-TCCSC-G----GGSTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC---CCEE--Ec---hhhhHHHHHHhCc-cccch-h----hhhHHHHHHHHHHH
Confidence            678999999999999999999999885   3333  11   2355777777665 21111 0    000000011 1233


Q ss_pred             HHHHhc-CCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 025041          133 EAKLKA-GTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC  211 (259)
Q Consensus       133 ~~~l~~-g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~  211 (259)
                      .+.+.. |.+||+|+.+.+.-.+.       ++...+.. ...+-..|||++|++++.+|+..|..+....+.++++.+.
T Consensus        70 ~~~l~~~g~~vi~d~~~~~~~~~~-------~~~~~l~~-~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~~~~~~~~~~~  141 (183)
T 2vli_A           70 QYASREAAGPLIVPVSISDTARHR-------RLMSGLKD-RGLSVHHFTLIAPLNVVLERLRRDGQPQVNVGTVEDRLNE  141 (183)
T ss_dssp             HHHHHHCSSCEEEEECCCCHHHHH-------HHHHHHHH-TTCCCEEEEEECCHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred             HHHHHhCCCcEEEeeeccCHHHHH-------HHHHHHHh-cCCceEEEEEeCCHHHHHHHHHhccccchhHHHHHHHHHh
Confidence            444554 77888996543221111       12222221 1223366999999999999998765332122344444444


Q ss_pred             HHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHHHHhhhhcC
Q 025041          212 YQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLDQVTACKKG  250 (259)
Q Consensus       212 y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~~l~~~~~~  250 (259)
                      |..+ .... +||++ .++++++++|.+.+...+...+.|
T Consensus       142 ~~~~-~~~~-~Id~~~~~~~~~~~~I~~~l~~~~~~~~~~  179 (183)
T 2vli_A          142 LRGE-QFQT-HIDTAGLGTQQVAEQIAAQVGLTLAPPPQG  179 (183)
T ss_dssp             HTSG-GGCS-EEECTTCCHHHHHHHHHHHHTCCCCCC---
T ss_pred             hccc-ccce-EeeCCCCCHHHHHHHHHHHHHHhcCCCCCC
Confidence            4433 3344 99997 899999999999887666544444

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.65  E-value=5.4e-16  Score=132.75  Aligned_cols=166  Identities=17%  Similarity=0.218  Sum_probs=90.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE----Eec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL----WRF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK  128 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~----~~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~  128 (259)
                      .-+.+.|.|+||||||||++.|+++++   +..+.    +++ ...++++|+.+++++..+..+.+....-+ ..++   
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g---~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~l-l~~~---   79 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEKFG---IPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGL-VKER---   79 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHHHT---CCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHH-HHHH---
T ss_pred             cccceeeECCCCCCHHHHHHHHHHHhC---CCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHH-HHHH---
Confidence            457789999999999999999999994   44332    121 22367889999998887654444322111 1111   


Q ss_pred             HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC------------
Q 025041          129 RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG------------  196 (259)
Q Consensus       129 ~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~------------  196 (259)
                         +.. ...+..+|+|+||.+.  .|         +..+......||++|+|++|++++.+|+..|.            
T Consensus        80 ---l~~-~~~~~g~ILDGfPRt~--~Q---------a~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~  144 (230)
T 3gmt_A           80 ---LKE-ADCANGYLFDGFPRTI--AQ---------ADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVK  144 (230)
T ss_dssp             ---HHS-GGGTTCEEEESCCCSH--HH---------HHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETT
T ss_pred             ---HhC-cccCCCeEecCCCCcH--HH---------HHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCccccc
Confidence               111 0113357889998752  22         22233445679999999999999999987651            


Q ss_pred             ------------------CCcc-hHH-HHHHH----------HHHHHhhh---------CCCeEEEcCCCCHHHHHHHHH
Q 025041          197 ------------------ERYE-HLE-FQRKV----------AQCYQMLR---------DSSWKIIDACQSIEDVEKQLK  237 (259)
Q Consensus       197 ------------------d~~e-~~~-~~~rv----------~~~y~~l~---------~~~~~vIDa~~s~eev~~~I~  237 (259)
                                        .|-+ +.+ +.+|+          .+.|.+..         ...++.||+++++|+|+++|.
T Consensus       145 ~~pp~~~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~  224 (230)
T 3gmt_A          145 FNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVR  224 (230)
T ss_dssp             TBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC------------
T ss_pred             CCCCCccCcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHH
Confidence                              0111 122 22332          23444321         135789999999999999999


Q ss_pred             HHHH
Q 025041          238 EIVL  241 (259)
Q Consensus       238 ~~i~  241 (259)
                      +++.
T Consensus       225 ~~l~  228 (230)
T 3gmt_A          225 RAQV  228 (230)
T ss_dssp             ----
T ss_pred             HHHh
Confidence            8775

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.61  E-value=2e-14  Score=116.58  Aligned_cols=162  Identities=7%  Similarity=-0.005  Sum_probs=86.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC-----CCCCHHHHHHHHHHhHHHH-
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ-----SHLDDHTIHLLFSANRWEK-  128 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~-----~~~~~~~~~ll~~a~r~~~-  128 (259)
                      +++|+|.|++||||||+++.|++.  ..|+.++  .        .+.++..+...     ..+.......+.     .. 
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~--~~~~~~i--~--------~d~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~   64 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAK--NPGFYNI--N--------RDDYRQSIMAHEERDEYKYTKKKEGIVT-----GMQ   64 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH--STTEEEE--C--------HHHHHHHHTTSCCGGGCCCCHHHHHHHH-----HHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhh--cCCcEEe--c--------HHHHHHHhhCCCccchhhhchhhhhHHH-----HHH
Confidence            468999999999999999999983  1233222  2        13444443321     124333222111     11 


Q ss_pred             HHHHHHHH---hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHH
Q 025041          129 RSMMEAKL---KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQ  205 (259)
Q Consensus       129 ~~~i~~~l---~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~  205 (259)
                      ...+.+.+   ..|..||+|+++.+.. +.       +.+..+......|..+|||++|++++.+|+..|+....+.+.+
T Consensus        65 ~~~~~~~l~~~~~g~~vi~d~~~~~~~-~~-------~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~i  136 (181)
T 1ly1_A           65 FDTAKSILYGGDSVKGVIISDTNLNPE-RR-------LAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVL  136 (181)
T ss_dssp             HHHHHHHHTSCSSCCEEEECSCCCSHH-HH-------HHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGCCCHHHH
T ss_pred             HHHHHHHHhhccCCCeEEEeCCCCCHH-HH-------HHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccCCCCHHHH
Confidence            13456677   7789999999876532 21       1222222223346789999999999999998875333345677


Q ss_pred             HHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          206 RKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       206 ~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      +++.+.|........++||++.+ ++|..+|...+..
T Consensus       137 ~~~~~~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~  172 (181)
T 1ly1_A          137 RSMYKSMREYLGLPVYNGTPGKP-KAVIFDVDGTLAK  172 (181)
T ss_dssp             HHHHHHHHHHHTCCCC---------------------
T ss_pred             HHHHHHhhccCCCCccccCCCCC-ceeeehhhhhhhc
Confidence            77777787764434445898874 7787777766654

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=99.59  E-value=6.7e-15  Score=138.91  Aligned_cols=170  Identities=14%  Similarity=0.151  Sum_probs=114.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      ...|++|+|+|.|||||+|+++.|.+.|+.+|+.|+.+.+|..     +..    ..  .+         . .|+     
T Consensus        40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~-----~E~----~~--~y---------l-~R~-----   93 (500)
T 3czp_A           40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSD-----EEL----ER--PP---------Q-WRF-----   93 (500)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCH-----HHH----TS--CT---------T-HHH-----
T ss_pred             CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCCh-----hhc----cC--Ch---------h-hhH-----
Confidence            3678999999999999999999999999999999988888761     111    11  11         0 121     


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCC-CCHH----HHHh---hh---ccCCCCCEEEEEeCCHHHHHhhcCCCCC---
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKG-IDIE----WCKA---PE---IGLLAPDSVLYLDIPPEKAAERGGYGGE---  197 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~g-l~~~----~~~~---~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~d---  197 (259)
                      +...-..|.+||+|||+|+...+....| ++.+    ++..   ++   ...+.|++.|||++|+++..+|+..|.+   
T Consensus        94 ~~~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~  173 (500)
T 3czp_A           94 WRRLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQ  173 (500)
T ss_dssp             HHHCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC--------
T ss_pred             HHhCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCc
Confidence            1112257999999999999998776433 4422    2322   22   3557899999999999999999987632   


Q ss_pred             --------CcchHHHHHHHHHHHHhhh---C---CCeEEEcCCC---CHHHHHHHHHHHHHHHHhhh
Q 025041          198 --------RYEHLEFQRKVAQCYQMLR---D---SSWKIIDACQ---SIEDVEKQLKEIVLDQVTAC  247 (259)
Q Consensus       198 --------~~e~~~~~~rv~~~y~~l~---~---~~~~vIDa~~---s~eev~~~I~~~i~~~l~~~  247 (259)
                              .++..++......+|....   +   .+|++||++.   ....|.+.|.+.|...+...
T Consensus       174 k~Wk~s~~D~~~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~~~l~~~  240 (500)
T 3czp_A          174 HSWKLSPLDWKQSEVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQAALATK  240 (500)
T ss_dssp             -----CSSCTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ccCCCCHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHHHHHHhc
Confidence                    1223344444444444421   1   4899999985   56788888888888777633

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.56  E-value=1.1e-14  Score=117.20  Aligned_cols=157  Identities=16%  Similarity=0.103  Sum_probs=84.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK  135 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~  135 (259)
                      +.|+|+|++||||||+++.|+++++   +.++..+... ....|..+++++...   +..    .|.  .  ....+.+.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~-~~~~g~~~~~~~~~~---~~~----~~~--~--~~~~~l~~   65 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLN---IPFYDVDEEV-QKREGLSIPQIFEKK---GEA----YFR--K--LEFEVLKD   65 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHT---CCEEEHHHHH-HHHHTSCHHHHHHHS---CHH----HHH--H--HHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC---CCEEECcHHH-HHHcCCCHHHHHHHh---ChH----HHH--H--HHHHHHHH
Confidence            4799999999999999999999984   4444322110 000111122222111   000    010  0  01122334


Q ss_pred             Hh-cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHh
Q 025041          136 LK-AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQM  214 (259)
Q Consensus       136 l~-~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~  214 (259)
                      +. .+.+||.|+.-   ..      +...+...+.    .+|++|||++|++++.+|+..|.++....++.+++.+.|..
T Consensus        66 l~~~~~~Vi~~g~~---~~------~~~~~~~~l~----~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~  132 (168)
T 2pt5_A           66 LSEKENVVISTGGG---LG------ANEEALNFMK----SRGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEE  132 (168)
T ss_dssp             HTTSSSEEEECCHH---HH------TCHHHHHHHH----TTSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHH
T ss_pred             HhccCCeEEECCCC---Ee------CCHHHHHHHH----cCCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHH
Confidence            44 56777775321   00      1112222222    37899999999999999998754332100112223333322


Q ss_pred             h----hCCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          215 L----RDSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       215 l----~~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      .    ....+++ |++.++++++++|.+.+.
T Consensus       133 ~~~~~~~~~~~i-~~~~~~~~~~~~i~~~l~  162 (168)
T 2pt5_A          133 RRKIYSKADIKV-KGEKPPEEVVKEILLSLE  162 (168)
T ss_dssp             HHHHHTTSSEEE-ECSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCEEE-CCCCCHHHHHHHHHHHHH
Confidence            1    1145666 777999999999998764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.54  E-value=2.8e-14  Score=116.57  Aligned_cols=163  Identities=20%  Similarity=0.253  Sum_probs=89.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH-
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM-  131 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~-  131 (259)
                      .+|.+|+|+|++||||||+++.|++.+...|++++.++        ++.++..+.....+..        .++..+++. 
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d--------~~~~~~~~~~~~~~~~--------~~~~~~~~~~   66 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD--------GDNIRQGLNKNLGFSP--------EDREENVRRI   66 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE--------HHHHTTTTTTTCCSSH--------HHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC--------ChHHHHHHhhcccccc--------ccHHHHHHHH
Confidence            46899999999999999999999999977788777554        3333332222111221        111111111 


Q ss_pred             --HHHHH-hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchH-----H
Q 025041          132 --MEAKL-KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHL-----E  203 (259)
Q Consensus       132 --i~~~l-~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~-----~  203 (259)
                        ....+ ..|.+++.+ ++. .  |..    ..+++..+......||++|||++|++++.+|+..+.  ++..     .
T Consensus        67 ~~~~~~~~~~~~~~~~~-~~~-~--~~~----~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~--~~~~~~~~~~  136 (179)
T 2pez_A           67 AEVAKLFADAGLVCITS-FIS-P--YTQ----DRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGL--YKKARAGEIK  136 (179)
T ss_dssp             HHHHHHHHHTTCEEEEE-CCC-C--CHH----HHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSH--HHHHHTTSSC
T ss_pred             HHHHHHHHHCCCEEEEe-cCC-c--chH----HHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhh--HHHHhccccc
Confidence              11112 456666554 221 1  110    012333332223478999999999999999986530  0000     0


Q ss_pred             HHHHHHHHHHhhhCCCeEEEcC-CCCHHHHHHHHHHHHHH
Q 025041          204 FQRKVAQCYQMLRDSSWKIIDA-CQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       204 ~~~rv~~~y~~l~~~~~~vIDa-~~s~eev~~~I~~~i~~  242 (259)
                      .+..+...|+....+. ++||+ +.+++++.++|.+.+..
T Consensus       137 ~~~~~~~~~~~~~~ad-~vid~~~~~~~~~~~~i~~~l~~  175 (179)
T 2pez_A          137 GFTGIDSEYEKPEAPE-LVLKTDSCDVNDCVQQVVELLQE  175 (179)
T ss_dssp             SCBTTTBCCCCCSSCS-EEEETTTSCHHHHHHHHHHHHHH
T ss_pred             ccccCCccccCCCCCc-EEEECCCCCHHHHHHHHHHHHHH
Confidence            0000111121111123 45554 57999999999988753

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=99.53  E-value=5.6e-15  Score=139.40  Aligned_cols=168  Identities=15%  Similarity=0.132  Sum_probs=113.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      ..+++|+|||.|||||+|++++|.+.|+.+|+.|+.+.+|..     +..    ..  .+         + .|+.     
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~-----~E~----~~--~y---------l-~R~~-----  351 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTE-----EER----AQ--PY---------L-WRFW-----  351 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCH-----HHH----TS--CT---------T-HHHH-----
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCCh-----hhh----cc--hH---------H-HHHH-----
Confidence            578999999999999999999999999999999998888861     110    11  11         0 1211     


Q ss_pred             HHHHhcCCeEEEcccccchhhhhcCCC-CC-HH------HHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC---C-
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSSAKG-ID-IE------WCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG---E-  197 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~~~g-l~-~~------~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d-  197 (259)
                      ...-..|.+||+|||+|+...+....| .+ .+      ++..++   ...+.|++.|||++|+++..+|+..|.   + 
T Consensus       352 ~~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k  431 (500)
T 3czp_A          352 RHIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYK  431 (500)
T ss_dssp             TTCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCT
T ss_pred             HhCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCcc
Confidence            111147999999999999987765333 23 22      222232   344679999999999999999987541   1 


Q ss_pred             -------CcchH----HHHHHHHHHHHhhh--CCCeEEEcCCC---CHHHHHHHHHHHHHHHHhh
Q 025041          198 -------RYEHL----EFQRKVAQCYQMLR--DSSWKIIDACQ---SIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       198 -------~~e~~----~~~~rv~~~y~~l~--~~~~~vIDa~~---s~eev~~~I~~~i~~~l~~  246 (259)
                             .++..    +|++.....+....  ..+|++|+++.   ....|.+.|.+.|...|..
T Consensus       432 ~Wk~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~~l~~  496 (500)
T 3czp_A          432 RYKITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEAAYKK  496 (500)
T ss_dssp             TSCCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHHHHhc
Confidence                   12222    34333333332222  25899999985   5678888888888888753

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.52  E-value=7.2e-14  Score=135.10  Aligned_cols=166  Identities=20%  Similarity=0.236  Sum_probs=102.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH---
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR---  129 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~---  129 (259)
                      .+|++|+|+|++||||||+++.|+++|...|+.++.++        ++.++..+.....+.+.        +|.+.+   
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD--------gD~iR~~L~~~~~fs~~--------dree~~r~i  113 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD--------GDNIRQGLNKNLGFSPE--------DREENVRRI  113 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES--------HHHHTTTTTTTCCSSHH--------HHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec--------hHHhhhccCccccCChh--------hhHHHHHHH
Confidence            37899999999999999999999999988888776654        34555443322223321        121111   


Q ss_pred             -HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcchHHHH
Q 025041          130 -SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYEHLEFQ  205 (259)
Q Consensus       130 -~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e~~~~~  205 (259)
                       ..++..+..|.+||+| +. +  .|+.    +.+++..+......|+++|||++|++++.+|+.++.   .+.......
T Consensus       114 ~eva~~~l~~G~iVI~d-~~-s--~~~~----~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~~~  185 (630)
T 1x6v_B          114 AEVAKLFADAGLVCITS-FI-S--PYTQ----DRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGF  185 (630)
T ss_dssp             HHHHHHHHHTTCEEEEE-CC-C--CCHH----HHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC----C
T ss_pred             HHHHHHHHhCCCEEEEe-Cc-h--hhHH----HHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHHHH
Confidence             2234556789999988 22 1  1221    123444444444568999999999999999987420   000000011


Q ss_pred             HHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHHH
Q 025041          206 RKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       206 ~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~~  243 (259)
                      ..+...|+... ..-++||++ .++++++++|.+.+...
T Consensus       186 ~~~~~~Ye~p~-~~dlvIDts~~s~eevv~~Il~~L~~~  223 (630)
T 1x6v_B          186 TGIDSEYEKPE-APELVLKTDSCDVNDCVQQVVELLQER  223 (630)
T ss_dssp             BTTTBCCCCCS-SCSEEEETTSSCHHHHHHHHHHHHHHT
T ss_pred             HHhhhhhcccC-CCcEEEECCCCCHHHHHHHHHHHHHhc
Confidence            11223333221 234789986 69999999999998764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.52  E-value=7.1e-13  Score=110.31  Aligned_cols=165  Identities=16%  Similarity=0.108  Sum_probs=91.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      .+|.+|+|.|++||||||+++.|+..+   |..++.....  ...  ...+.. ..+..+........+  ...+  ..+
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~--~~~--~~~~~~-~~g~~~~~~~~~~~~--~~~~--~~~   94 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAF--HSP--ENIATM-QRGIPLTDEDRWPWL--RSLA--EWM   94 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGG--SCH--HHHHHH-HTTCCCCHHHHHHHH--HHHH--HHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEccccc--ccH--HHHHHH-hcCCCCCCcccccHH--HHHH--HHH
Confidence            468999999999999999999999988   4432221110  011  111121 112122221111000  1111  223


Q ss_pred             HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY  212 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y  212 (259)
                      ...+..|..+|+|.....           ......+ .....+..+|||++|++++.+|+..|..+....+..+...+.+
T Consensus        95 ~~~~~~g~~viid~~~~~-----------~~~~~~l-~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~  162 (200)
T 4eun_A           95 DARADAGVSTIITCSALK-----------RTYRDVL-REGPPSVDFLHLDGPAEVIKGRMSKREGHFMPASLLQSQLATL  162 (200)
T ss_dssp             HHHHHTTCCEEEEECCCC-----------HHHHHHH-TTSSSCCEEEEEECCHHHHHHHHTTCSCCSSCGGGHHHHHHHC
T ss_pred             HHHHhcCCCEEEEchhhh-----------HHHHHHH-HHhCCceEEEEEeCCHHHHHHHHHhcccCCCCHHHHHHHHHHh
Confidence            344566777777753221           1111111 2223367899999999999999987754433222222222222


Q ss_pred             Hhhh-CCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          213 QMLR-DSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       213 ~~l~-~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      ..+. +...++||++.++++++++|.+.+.
T Consensus       163 ~~~~~~~~~~~Id~~~~~~e~~~~I~~~l~  192 (200)
T 4eun_A          163 EALEPDESGIVLDLRQPPEQLIERALTWLD  192 (200)
T ss_dssp             CCCCTTSCEEEEETTSCHHHHHHHHHHHHC
T ss_pred             CCCCCCCCeEEEECCCCHHHHHHHHHHHHH
Confidence            2221 1357899999999999999998875

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.51  E-value=5.4e-13  Score=112.24  Aligned_cols=166  Identities=14%  Similarity=0.162  Sum_probs=94.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-------cCCCCChHHHHHHHHHh-----CCCCCCHHHHH-H
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-------FPDRTTSVGQMISAYLS-----NQSHLDDHTIH-L  119 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-------~p~~~~~~g~~ir~~l~-----~~~~~~~~~~~-l  119 (259)
                      .++++|+|+|++||||||+++.|++ +   |+.++..+       +|.  ......+.+.+.     ..+.++..... +
T Consensus         2 ~~~~~I~i~G~~GSGKST~~~~L~~-l---g~~~id~D~~~~~~~~~~--~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~   75 (218)
T 1vht_A            2 SLRYIVALTGGIGSGKSTVANAFAD-L---GINVIDADIIARQVVEPG--APALHAIADHFGANMIAADGTLQRRALRER   75 (218)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH-T---TCEEEEHHHHHHHTTSTT--CTHHHHHHHHHCGGGBCTTSCBCHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH-c---CCEEEEccHHHHHHhcCC--hHHHHHHHHHhHHHHcCCCCCCCHHHHHHH
Confidence            4678999999999999999999987 4   66655431       232  222233333321     11234443222 2


Q ss_pred             HHH-HhHHHHHH-HHHHH--------Hh--cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHH
Q 025041          120 LFS-ANRWEKRS-MMEAK--------LK--AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEK  187 (259)
Q Consensus       120 l~~-a~r~~~~~-~i~~~--------l~--~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~  187 (259)
                      +|. .+++..++ .+.|.        +.  .+..+|+|....    +.      ..|       ...||++|||++|+++
T Consensus        76 ~f~~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~~~l----~~------~~~-------~~~~d~vi~l~~~~e~  138 (218)
T 1vht_A           76 IFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLL----VE------NSL-------YKKANRVLVVDVSPET  138 (218)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECTTT----TT------TTG-------GGGCSEEEEEECCHHH
T ss_pred             HhCCHHHHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEeeee----ec------cCc-------cccCCEEEEEECCHHH
Confidence            222 22222221 12222        22  244566654211    11      011       2358999999999999


Q ss_pred             HHhhcCCCCCCcchHHHHHHHHH---HH--HhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHh
Q 025041          188 AAERGGYGGERYEHLEFQRKVAQ---CY--QMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVT  245 (259)
Q Consensus       188 ~~~R~~~R~d~~e~~~~~~rv~~---~y--~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~  245 (259)
                      +.+|+..|+. +...++.+++..   .|  ...++   ++||++.+++++.++|.+.+...+.
T Consensus       139 ~~~Rl~~R~~-~~~~~~~~~~~~~~~~~~~~~~ad---~vId~~~~~~~~~~~I~~~l~~~~~  197 (218)
T 1vht_A          139 QLKRTMQRDD-VTREHVEQILAAQATREARLAVAD---DVIDNNGAPDAIASDVARLHAHYLQ  197 (218)
T ss_dssp             HHHHHHHHHT-CCHHHHHHHHHHSCCHHHHHHHCS---EEEECSSCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCC-CCHHHHHHHHHhcCChHHHHHhCC---EEEECCCCHHHHHHHHHHHHHHHHH
Confidence            9999876522 222233444332   12  22232   6899988999999999999887664

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.49  E-value=3.3e-12  Score=103.52  Aligned_cols=164  Identities=14%  Similarity=0.101  Sum_probs=90.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      .+|.+|+|.|++||||||+++.|++.+   |..++......  .  ...++... .+..+........+  ...+  ..+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~--~--~~~~~~~~-~g~~~~~~~~~~~~--~~~~--~~~   73 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLH--P--RRNIEKMA-SGEPLNDDDRKPWL--QALN--DAA   73 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGC--C--HHHHHHHH-TTCCCCHHHHHHHH--HHHH--HHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCcccc--c--hHHHHHhh-cCcCCCccccccHH--HHHH--HHH
Confidence            368899999999999999999999987   44333211111  1  11122211 12122221100000  1111  223


Q ss_pred             HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCC-EEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPD-SVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC  211 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~Pd-lvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~  211 (259)
                      ...+..|..||+|.....           ..+...+.. . .++ .+|||++|++++.+|+..|+.........+...+.
T Consensus        74 ~~~~~~~~~~vi~~~~~~-----------~~~~~~l~~-~-~~~~~vv~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~  140 (175)
T 1knq_A           74 FAMQRTNKVSLIVCSALK-----------KHYRDLLRE-G-NPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFET  140 (175)
T ss_dssp             HHHHHHCSEEEEECCCCS-----------HHHHHHHHT-T-CTTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEeCchH-----------HHHHHHHHh-c-CCCEEEEEEECCHHHHHHHHHhccCCCCchHHHHHHHHh
Confidence            444556777777743211           111111221 1 246 79999999999999998775433222332222222


Q ss_pred             HHhh--hCCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          212 YQML--RDSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       212 y~~l--~~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      |..+  .+...++||++.++++++++|.+.+.
T Consensus       141 ~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~  172 (175)
T 1knq_A          141 LQEPGADETDVLVVDIDQPLEGVVASTIEVIK  172 (175)
T ss_dssp             CCCCCTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             hhCcccCCCCeEEEeCCCCHHHHHHHHHHHHh
Confidence            2222  12357899999999999999988763

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=1.6e-12  Score=108.00  Aligned_cols=165  Identities=11%  Similarity=0.031  Sum_probs=89.3

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-  129 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-  129 (259)
                      .+.++.+|+|.|++||||||+++.|++.++   +.++..         .+.+....  +..+.....  .+....+... 
T Consensus        21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~---~~~i~~---------d~~~~~~~--g~~i~~~~~--~~~~~~~~~~e   84 (199)
T 3vaa_A           21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLN---VPFIDL---------DWYIEERF--HKTVGELFT--ERGEAGFRELE   84 (199)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHHT---CCEEEH---------HHHHHHHH--TSCHHHHHH--HHHHHHHHHHH
T ss_pred             ecCCCCEEEEEcCCCCCHHHHHHHHHHHcC---CCEEcc---------hHHHHHHh--CCcHHHHHH--hcChHHHHHHH
Confidence            346788999999999999999999999994   444321         12222211  111111000  0000011111 


Q ss_pred             -HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcC-CCCCCc-----chH
Q 025041          130 -SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGG-YGGERY-----EHL  202 (259)
Q Consensus       130 -~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~-~R~d~~-----e~~  202 (259)
                       ..+......+.+||..+.-   ...      ..+....+    ..++.+|||++|++++.+|+. .+..|-     ...
T Consensus        85 ~~~l~~l~~~~~~vi~~ggg---~~~------~~~~~~~l----~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~  151 (199)
T 3vaa_A           85 RNMLHEVAEFENVVISTGGG---APC------FYDNMEFM----NRTGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDD  151 (199)
T ss_dssp             HHHHHHHTTCSSEEEECCTT---GGG------STTHHHHH----HHHSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHH
T ss_pred             HHHHHHHhhcCCcEEECCCc---EEc------cHHHHHHH----HcCCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChh
Confidence             2233333445555543210   010      01111111    237899999999999999997 432221     122


Q ss_pred             HHHHHHHHHHHh---hhCCCeEEEcCCC-CHHHHHHHHHHHHHHHH
Q 025041          203 EFQRKVAQCYQM---LRDSSWKIIDACQ-SIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       203 ~~~~rv~~~y~~---l~~~~~~vIDa~~-s~eev~~~I~~~i~~~l  244 (259)
                      ++.+.+.+.|.+   +.....++||++. ++++++++|.+.+..++
T Consensus       152 ~~~~~i~~~~~~r~~~y~~ad~~Idt~~~s~ee~~~~I~~~l~~~l  197 (199)
T 3vaa_A          152 ELMDFIIQALEKRAPFYTQAQYIFNADELEDRWQIESSVQRLQELL  197 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHhhCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            344444444443   1122457889875 99999999999998876

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.40  E-value=7.5e-13  Score=110.51  Aligned_cols=172  Identities=12%  Similarity=0.102  Sum_probs=94.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeE-EEEecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSV-ELWRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLF  121 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v-~~~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~  121 (259)
                      +.+|++|+|.|++||||||+++.|++.+.. .++.+ ..++.|..+..-        .+.+......+. +.....   +
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~-~~~~~~---~   84 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQ-FLEFDK---Y   84 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTC-EEEEEE---E
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCC-CEEeHH---h
Confidence            678999999999999999999999998853 22222 223444311100        122222222111 000000   0


Q ss_pred             HHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCC-CCEEEEEe-CCHHHHHhhcCCCCCC
Q 025041          122 SANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLA-PDSVLYLD-IPPEKAAERGGYGGER  198 (259)
Q Consensus       122 ~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~-PdlvI~Ld-~~~e~~~~R~~~R~d~  198 (259)
                      ..+.+.. ...+...+++|..||+|..+...              ..+....+. ..++|||+ +|++++.+|+..|+..
T Consensus        85 ~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~--------------~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~  150 (204)
T 2qor_A           85 ANNFYGTLKSEYDLAVGEGKICLFEMNINGV--------------KQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTE  150 (204)
T ss_dssp             TTEEEEEEHHHHHHHHHTTCEEEEECCHHHH--------------HHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTS
T ss_pred             CCCeecCCHHHHHHHHHcCCeEEEEECHHHH--------------HHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCC
Confidence            0000000 12345667789999998644211              111122221 23899998 9999999999877532


Q ss_pred             cchHHHHHHHHHHHHhh-----hCCCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          199 YEHLEFQRKVAQCYQML-----RDSSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       199 ~e~~~~~~rv~~~y~~l-----~~~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                      - ..+..+++.....++     ...+++++| + ++++++++|.+.|...+
T Consensus       151 ~-~~~i~~rl~~~~~~~~~~~~~~~d~vi~n-~-~~e~~~~~i~~~i~~~~  198 (204)
T 2qor_A          151 K-PEEINKRMQELTREMDEADKVGFNYFIVN-D-DLARTYAELREYLLGSY  198 (204)
T ss_dssp             C-HHHHHHHHHHHHHHHHHHHHHTCSEEEEC-S-SHHHHHHHHHHHHHHHC
T ss_pred             C-HHHHHHHHHHHHHHHHHhhhccCcEEEEC-c-CHHHHHHHHHHHHHHHh
Confidence            1 123334443332222     123455444 4 89999999999998765

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.39  E-value=2.3e-12  Score=103.86  Aligned_cols=152  Identities=20%  Similarity=0.207  Sum_probs=77.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEA  134 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~  134 (259)
                      -..|+|+|++||||||+++.|+++|+   ++++..+.+. ....|..+++++...   +..    .+.  ..+ ...+..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg---~~~id~D~~~-~~~~g~~~~~~~~~~---g~~----~~~--~~~-~~~l~~   72 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALK---LEVLDTDMII-SERVGLSVREIFEEL---GED----NFR--MFE-KNLIDE   72 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHT---CCEEEHHHHH-HHHHTSCHHHHHHHT---CHH----HHH--HHH-HHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHH-HHHhCCCHHHHHHHh---CHH----HHH--HHH-HHHHHH
Confidence            46899999999999999999999994   5555322110 000011111221110   000    000  000 011223


Q ss_pred             HHhcCCe-EEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC--CCC--cc-hHHH---H
Q 025041          135 KLKAGTT-LIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG--GER--YE-HLEF---Q  205 (259)
Q Consensus       135 ~l~~g~~-VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R--~d~--~e-~~~~---~  205 (259)
                      ....+.. ||..+.   .+..      .    ..    +..+|++|||++|++++.+|+..|  .++  .+ ...+   .
T Consensus        73 ~~~~~~~~Vi~~g~---g~~~------~----~~----l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~  135 (168)
T 1zuh_A           73 LKTLKTPHVISTGG---GIVM------H----EN----LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELF  135 (168)
T ss_dssp             HHTCSSCCEEECCG---GGGG------C----GG----GTTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHH
T ss_pred             HHhcCCCEEEECCC---CEec------h----hH----HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHH
Confidence            3334555 654211   1110      0    01    244789999999999999999765  222  11 1111   1


Q ss_pred             HHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHH
Q 025041          206 RKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       206 ~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                      ......|..   ...++||++.++++++++|.+.+
T Consensus       136 ~~r~~~~~~---~a~~~Id~~~~~e~~~~~I~~~l  167 (168)
T 1zuh_A          136 EKRQALYEK---NASFIIDARGGLNNSLKQVLQFI  167 (168)
T ss_dssp             HHHHHHHHH---TCSEEEEGGGCHHHHHHHHHHC-
T ss_pred             HHHHHHHHH---HCCEEEECCCCHHHHHHHHHHHh
Confidence            111122322   23478998889999999998754

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.37  E-value=3.5e-12  Score=121.99  Aligned_cols=165  Identities=19%  Similarity=0.173  Sum_probs=97.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME  133 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~  133 (259)
                      ++.+|+|+|++||||||+++.|++.|...|..+..++        ++.+++.+.....+........+  .+.  ...+.
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld--------~D~ir~~l~~~~~f~~~er~~~l--~~i--~~~~~  438 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD--------GDVVRTHLSRGLGFSKEDRITNI--LRV--GFVAS  438 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC--------HHHHHHHTCTTCCSSHHHHHHHH--HHH--HHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC--------chHhhhhhcccccccHHHHHHHH--HHH--HHHHH
Confidence            4789999999999999999999999988887766554        45566655433233331111000  111  12344


Q ss_pred             HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCC-EEEEEeCCHHHHHhhcCCCC---CCcchHHHHHHHH
Q 025041          134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPD-SVLYLDIPPEKAAERGGYGG---ERYEHLEFQRKVA  209 (259)
Q Consensus       134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~Pd-lvI~Ld~~~e~~~~R~~~R~---d~~e~~~~~~rv~  209 (259)
                      ..++.|..||+|...    .|+..    .+...   ..+..++ ++|||++|++++.+|+..+.   ++.+..+.+..+.
T Consensus       439 ~~l~~G~~VI~d~~~----~~~~~----r~~~~---~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr  507 (546)
T 2gks_A          439 EIVKHNGVVICALVS----PYRSA----RNQVR---NMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVD  507 (546)
T ss_dssp             HHHHTTCEEEEECCC----CCHHH----HHHHH---TTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTT
T ss_pred             HHHhCCCEEEEEcCC----CCHHH----HHHHH---HHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhh
Confidence            566789999998422    12210    01121   1222367 89999999999999986320   0000000010111


Q ss_pred             HHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 025041          210 QCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD  242 (259)
Q Consensus       210 ~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~  242 (259)
                      ..|... ....++||++ .++++++++|.+.+.+
T Consensus       508 ~~~e~~-~~adivIDts~~s~eev~~~I~~~L~~  540 (546)
T 2gks_A          508 DPYEPP-VAPEVRVDTTKLTPEESALKILEFLKK  540 (546)
T ss_dssp             BCCCCC-SSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             hccccc-cCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            122211 1234889986 8999999999988764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.37  E-value=1.2e-11  Score=99.72  Aligned_cols=154  Identities=15%  Similarity=0.104  Sum_probs=83.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhH---HHHH-HH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANR---WEKR-SM  131 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r---~~~~-~~  131 (259)
                      ++|+|+|++||||||+++.|++.|+   +.++..         ...++.. . +.....     ++....   +... ..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~---------d~~~~~~-~-g~~~~~-----~~~~~~~~~~~~~~~~   63 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG---YEFVDT---------DIFMQHT-S-GMTVAD-----VVAAEGWPGFRRRESE   63 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT---CEEEEH---------HHHHHHH-H-CSCHHH-----HHHHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC---CcEEcc---------cHHHHHH-h-CCCHHH-----HHHHcCHHHHHHHHHH
Confidence            5799999999999999999999984   444321         1222222 1 111100     010000   1111 11


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcC--CC-CCC--cchHHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGG--YG-GER--YEHLEFQR  206 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~--~R-~d~--~e~~~~~~  206 (259)
                      +...+..+.+||.++.-  ...       .......+.    .+|++|||++|++++.+|+.  .| .++  .+..+..+
T Consensus        64 ~~~~l~~~~~vi~~g~~--~~~-------~~~~~~~l~----~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~  130 (173)
T 1e6c_A           64 ALQAVATPNRVVATGGG--MVL-------LEQNRQFMR----AHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAE  130 (173)
T ss_dssp             HHHHHCCSSEEEECCTT--GGG-------SHHHHHHHH----HHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHH
T ss_pred             HHHHhhcCCeEEECCCc--EEe-------CHHHHHHHH----cCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHH
Confidence            22223445566654320  000       111111111    26899999999999999987  55 222  22223444


Q ss_pred             HHHHHHHhhh---CCCeEEEcCC-CCHHHHHHHHHHHHH
Q 025041          207 KVAQCYQMLR---DSSWKIIDAC-QSIEDVEKQLKEIVL  241 (259)
Q Consensus       207 rv~~~y~~l~---~~~~~vIDa~-~s~eev~~~I~~~i~  241 (259)
                      ++...|....   ....++||++ .++++++++|.+.+.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~~i~~~l~  169 (173)
T 1e6c_A          131 EMEAVLREREALYQDVAHYVVDATQPPAAIVCELMQTMR  169 (173)
T ss_dssp             HHHHHHHHHHHHHHHHCSEEEETTSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCcEEEECCCCCHHHHHHHHHHHhc
Confidence            5555444321   1134689988 899999999988653

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.36  E-value=7.3e-11  Score=96.25  Aligned_cols=160  Identities=17%  Similarity=0.111  Sum_probs=82.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH--HH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR--SM  131 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~--~~  131 (259)
                      .++.|+|.|++||||||+++.|++.++   +.++..         .+.+.+...  ..+.....  .+....+...  ..
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l~---~~~i~~---------d~~~~~~~g--~~~~~~~~--~~g~~~~~~~~~~~   67 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLTK---RILYDS---------DKEIEKRTG--ADIAWIFE--MEGEAGFRRREREM   67 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHHC---CCEEEH---------HHHHHHHHT--SCHHHHHH--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEC---------hHHHHHHcC--CChhhHHH--HhCHHHHHHHHHHH
Confidence            467899999999999999999999984   444421         122222211  11111000  0000111111  22


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhc--CCCCCC--cchHHHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERG--GYGGER--YEHLEFQRK  207 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~--~~R~d~--~e~~~~~~r  207 (259)
                      +.........||..+.-   ...      +......+..    ..++|||++|++++.+|+  ..+..+  ....+..+.
T Consensus        68 ~~~~~~~~~~vi~~gg~---~~~------~~~~~~~l~~----~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~  134 (185)
T 3trf_A           68 IEALCKLDNIILATGGG---VVL------DEKNRQQISE----TGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEK  134 (185)
T ss_dssp             HHHHHHSSSCEEECCTT---GGG------SHHHHHHHHH----HEEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHH
T ss_pred             HHHHHhcCCcEEecCCc---eec------CHHHHHHHHh----CCcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHH
Confidence            23333344556554311   111      1111111111    238999999999999999  543222  111122222


Q ss_pred             HHH-------HHHhhhCCCeEEEcCCC-CHHHHHHHHHHHHHHHHh
Q 025041          208 VAQ-------CYQMLRDSSWKIIDACQ-SIEDVEKQLKEIVLDQVT  245 (259)
Q Consensus       208 v~~-------~y~~l~~~~~~vIDa~~-s~eev~~~I~~~i~~~l~  245 (259)
                      +..       .|.+.   ..++||++. ++++++++|.+.+...+.
T Consensus       135 l~~~~~~r~~~y~~~---ad~~Idt~~~~~~e~~~~I~~~l~~~~~  177 (185)
T 3trf_A          135 LQQLNEIRKPLYQAM---ADLVYPTDDLNPRQLATQILVDIKQTYS  177 (185)
T ss_dssp             HHHHHHHHHHHHHHH---CSEEEECTTCCHHHHHHHHHHHSCC---
T ss_pred             HHHHHHHHHHHHhhc---CCEEEECCCCCHHHHHHHHHHHHHHHhh
Confidence            222       23332   237889875 999999999998876664

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.35  E-value=2.2e-12  Score=123.97  Aligned_cols=162  Identities=17%  Similarity=0.233  Sum_probs=96.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCC-CeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH---
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLG-HSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK---  128 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g-~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~---  128 (259)
                      .+|++|+|+|++||||||+++.|+++|...| +.+..++        ++.++..+..+..+...        +|..+   
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD--------~D~ir~~l~~~~~f~~~--------er~~~i~r  457 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL--------GDTVRHELSSELGFTRE--------DRHTNIQR  457 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE--------HHHHHHHTCTTCCCSHH--------HHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC--------cHHHHHHhccccCCChh--------HHHHHHHH
Confidence            4678999999999999999999999998767 6666554        45566654333233321        12111   


Q ss_pred             H-HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcch-----H
Q 025041          129 R-SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEH-----L  202 (259)
Q Consensus       129 ~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~-----~  202 (259)
                      . ..++....+|.+||+|- + +.  |+..    .+++..+.... .++++|||++|++++.+|...+  .++.     .
T Consensus       458 i~~v~~~~~~~g~~VI~~~-i-s~--~~~~----R~~~r~l~~~~-g~~~~V~Lda~~ev~~~R~~r~--l~~~~~~~~i  526 (573)
T 1m8p_A          458 IAFVATELTRAGAAVIAAP-I-AP--YEES----RKFARDAVSQA-GSFFLVHVATPLEHCEQSDKRG--IYAAARRGEI  526 (573)
T ss_dssp             HHHHHHHHHHTTCEEEEEC-C-CC--CHHH----HHHHHHHHHTT-SEEEEEEECCCHHHHHHHCSSC--HHHHHHTTSS
T ss_pred             HHHHHHHHHhCCCEEEEEc-C-CC--cHHH----HHHHHHHHHhc-CCeEEEEEeCCHHHHHHHhccc--chhhhhHHHH
Confidence            1 23445567899999982 1 11  2111    12232222211 1569999999999999996532  0100     0


Q ss_pred             HHHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 025041          203 EFQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD  242 (259)
Q Consensus       203 ~~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~  242 (259)
                      +.+..+...|... ...-++||++ .++++++++|.+.+.+
T Consensus       527 ~~~~~~r~~~~~p-~~~dl~IDts~~s~eevv~~Il~~l~~  566 (573)
T 1m8p_A          527 KGFTGVDDPYETP-EKADLVVDFSKQSVRSIVHEIILVLES  566 (573)
T ss_dssp             SSCBTTTBCCCCC-SSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHhcccccccc-CCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence            0000011112111 1234889987 5999999999998864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.35  E-value=3.2e-11  Score=105.91  Aligned_cols=190  Identities=15%  Similarity=0.166  Sum_probs=95.8

Q ss_pred             CCCCcccccccCcc--cccC---CCCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-------cCCCCChHH
Q 025041           32 KCSCTPFRMESSSS--LRIG---NIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-------FPDRTTSVG   99 (259)
Q Consensus        32 ~~~~~~~~~~~~~~--~~~~---~~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-------~p~~~~~~g   99 (259)
                      |.|....|+.-..+  ....   ....++++|+|+|++||||||+++.|+ .+   |+.++...       +|+ .....
T Consensus        47 ~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTva~~La-~l---g~~~id~D~~~~~~~~~~-~~~~~  121 (281)
T 2f6r_A           47 KVSSSSFRQRILGNLLQPPNERPELPSGLYVLGLTGISGSGKSSVAQRLK-NL---GAYIIDSDHLGHRAYAPG-GPAYQ  121 (281)
T ss_dssp             --------CEETTSCCSCCCCCTTSCTTCEEEEEEECTTSCHHHHHHHHH-HH---TCEEEEHHHHHHHHTSTT-STTHH
T ss_pred             eecchHHHHHHHHHHhCCccccccCCCCCEEEEEECCCCCCHHHHHHHHH-HC---CCcEEehhHHHHHHhcCC-hHHHH
Confidence            45555566655422  1110   122456899999999999999999999 44   66665431       222 11211


Q ss_pred             HHHHHHHh----C-CCCCCHHHH-HHHHHH-hHHH------------HH-HHHHHHHhc-CCeEEEcccccchhhhhcCC
Q 025041          100 QMISAYLS----N-QSHLDDHTI-HLLFSA-NRWE------------KR-SMMEAKLKA-GTTLIVDRYSYSGVAFSSAK  158 (259)
Q Consensus       100 ~~ir~~l~----~-~~~~~~~~~-~ll~~a-~r~~------------~~-~~i~~~l~~-g~~VI~DR~~~s~~ay~~~~  158 (259)
                      + +.+.+.    . .+.++.... ..+|.. .+..            .. ..+...... ..+||+|+.+.    +..  
T Consensus       122 ~-i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l----~~~--  194 (281)
T 2f6r_A          122 P-VVEAFGTDILHKDGTINRKVLGSRVFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAML----LEA--  194 (281)
T ss_dssp             H-HHHHHCGGGBCTTSSBCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTT----TTT--
T ss_pred             H-HHHHcCccccCCCCCcCHHHHHHHHhCCHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechh----hcc--
Confidence            2 222111    1 122333221 111110 0100            00 122222233 36889887531    110  


Q ss_pred             CCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH--Hh-hhCCCeEEEcCCCCHHHHHHH
Q 025041          159 GIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY--QM-LRDSSWKIIDACQSIEDVEKQ  235 (259)
Q Consensus       159 gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y--~~-l~~~~~~vIDa~~s~eev~~~  235 (259)
                          .|       ...+|++|||++|++++.+|+..|+. ....+..+++...+  .. ..... ++||++.+++++.++
T Consensus       195 ----~~-------~~~~d~vI~l~a~~ev~~~Rl~~R~g-~s~e~~~~ri~~q~~~~~~~~~AD-~vIdn~~s~eel~~~  261 (281)
T 2f6r_A          195 ----GW-------QSMVHEVWTVVIPETEAVRRIVERDG-LSEAAAQSRLQSQMSGQQLVEQSN-VVLSTLWESHVTQSQ  261 (281)
T ss_dssp             ----TG-------GGGCSEEEEEECCHHHHHHHHHHHHC-CCHHHHHHHHHTSCCHHHHHHTCS-EEEECSSCHHHHHHH
T ss_pred             ----ch-------HHhCCEEEEEcCCHHHHHHHHHHcCC-CCHHHHHHHHHHcCChHhhHhhCC-EEEECCCCHHHHHHH
Confidence                11       12378999999999999999876522 11223334433221  01 11123 678998999999999


Q ss_pred             HHHHHHHHHhh
Q 025041          236 LKEIVLDQVTA  246 (259)
Q Consensus       236 I~~~i~~~l~~  246 (259)
                      |.+.+..++..
T Consensus       262 I~~~l~~l~~~  272 (281)
T 2f6r_A          262 VEKAWNLLQKR  272 (281)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998876543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.33  E-value=5.2e-11  Score=100.17  Aligned_cols=73  Identities=19%  Similarity=0.236  Sum_probs=45.1

Q ss_pred             CCCCCEEEEEeCCHHHHHhhcC----CCCC--Ccch--HHHHHHHHHHHHh----hhC-CCeEEEcCC-CCHHHHHHHHH
Q 025041          172 LLAPDSVLYLDIPPEKAAERGG----YGGE--RYEH--LEFQRKVAQCYQM----LRD-SSWKIIDAC-QSIEDVEKQLK  237 (259)
Q Consensus       172 ~~~PdlvI~Ld~~~e~~~~R~~----~R~d--~~e~--~~~~~rv~~~y~~----l~~-~~~~vIDa~-~s~eev~~~I~  237 (259)
                      ++.+|++|||++|+++..+|..    .|+.  ..+.  ..+.+++...|..    +.. ...++||++ .++++++++|.
T Consensus       138 ~~~~d~~i~l~~~~e~~~~R~~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~~~ev~~~I~  217 (227)
T 1cke_A          138 FPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKAL  217 (227)
T ss_dssp             CTTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETTTSCHHHHHHHHH
T ss_pred             ecCCCEEEEEeCCHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCCHHHHHHHHH
Confidence            4578999999999999999942    2221  2221  1233333223321    222 245899998 89999999999


Q ss_pred             HHHHHHH
Q 025041          238 EIVLDQV  244 (259)
Q Consensus       238 ~~i~~~l  244 (259)
                      +.+...+
T Consensus       218 ~~l~~~~  224 (227)
T 1cke_A          218 QYARQKL  224 (227)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9887664

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.32  E-value=2.4e-11  Score=104.22  Aligned_cols=167  Identities=20%  Similarity=0.274  Sum_probs=92.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE--EEEe-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV--ELWR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR  129 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v--~~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~  129 (259)
                      .++.+|+|.|++||||||+++.|+++++......  +... .+. +...+..++.++.++.........           
T Consensus        25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~v~-----------   92 (246)
T 2bbw_A           25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKA-STEVGEMAKQYIEKSLLVPDHVIT-----------   92 (246)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHT-TCHHHHHHHHHHHTTCCCCHHHHH-----------
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhc-CChHHHHHHHHHHcCCCCCHHHHH-----------
Confidence            4578999999999999999999999984321110  0000 111 223444444444433222221110           


Q ss_pred             HHHHHHHh--cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC-----------
Q 025041          130 SMMEAKLK--AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG-----------  196 (259)
Q Consensus       130 ~~i~~~l~--~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~-----------  196 (259)
                      +.+...+.  .+..+++|+++.+.           .....+. ....++++|||++|++++.+|+..|.           
T Consensus        93 ~~l~~~l~~~~~~~~il~g~~~~~-----------~~~~~l~-~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al  160 (246)
T 2bbw_A           93 RLMMSELENRRGQHWLLDGFPRTL-----------GQAEALD-KICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNL  160 (246)
T ss_dssp             HHHHHHHHTCTTSCEEEESCCCSH-----------HHHHHHH-TTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEET
T ss_pred             HHHHHHHHhcCCCeEEEECCCCCH-----------HHHHHHH-hhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCcccc
Confidence            11112222  24456678765421           1111111 23568999999999999988864320           


Q ss_pred             ---------------CCc-----c-hHHHHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHHHHHHh
Q 025041          197 ---------------ERY-----E-HLEFQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIVLDQVT  245 (259)
Q Consensus       197 ---------------d~~-----e-~~~~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i~~~l~  245 (259)
                                     +..     + ...+.+++.. |.+.        . ...+++||++++ ++|+++|.+.+.+.+.
T Consensus       161 ~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~-~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~~  237 (246)
T 2bbw_A          161 DFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ-YKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKIT  237 (246)
T ss_dssp             TTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH-HHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTSC
T ss_pred             ccCCCcccccccccccccccCCCCcHHHHHHHHHH-HHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhCC
Confidence                           111     1 1233333332 2211        1 135899999988 9999999999887554

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.30  E-value=3.2e-11  Score=98.44  Aligned_cols=156  Identities=18%  Similarity=0.122  Sum_probs=81.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHH---HHHHHHhHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTI---HLLFSANRWEKRSM  131 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~---~ll~~a~r~~~~~~  131 (259)
                      +++|+|.|++||||||+++.|++.++   +.++..         ...+++.. . ........   ...|..  .. ...
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~---------D~~~~~~~-g-~~~~~~~~~~g~~~~~~--~~-~~~   64 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAKALG---VGLLDT---------DVAIEQRT-G-RSIADIFATDGEQEFRR--IE-EDV   64 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHHHHT---CCEEEH---------HHHHHHHH-S-SCHHHHHHHHCHHHHHH--HH-HHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC---CCEEeC---------chHHHHHc-C-CCHHHHHHHhChHHHHH--HH-HHH
Confidence            45799999999999999999999984   444321         12222222 1 11100000   000100  00 012


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--cchHHHHHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--YEHLEFQRKVA  209 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~e~~~~~~rv~  209 (259)
                      +...+.....||.++..   ...      +......+    . .+.+|||++|++++.+|+..|..+  +...+..+.+.
T Consensus        65 ~~~~~~~~~~vi~~g~~---~v~------~~~~~~~l----~-~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~  130 (184)
T 2iyv_A           65 VRAALADHDGVLSLGGG---AVT------SPGVRAAL----A-GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYR  130 (184)
T ss_dssp             HHHHHHHCCSEEECCTT---GGG------SHHHHHHH----T-TSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHH
T ss_pred             HHHHHhcCCeEEecCCc---EEc------CHHHHHHH----c-CCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHH
Confidence            23333344556654321   111      11111111    1 568999999999999999876432  11111122222


Q ss_pred             HHHHh---h-hCCCeEEEcCC-CCHHHHHHHHHHHHH
Q 025041          210 QCYQM---L-RDSSWKIIDAC-QSIEDVEKQLKEIVL  241 (259)
Q Consensus       210 ~~y~~---l-~~~~~~vIDa~-~s~eev~~~I~~~i~  241 (259)
                      ..|..   . .....++||++ .++++++++|.+.+.
T Consensus       131 ~~~~~r~~~~~~~~~~~Idt~~~s~ee~~~~I~~~l~  167 (184)
T 2iyv_A          131 ALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQ  167 (184)
T ss_dssp             HHHHHHHHHHHHHCSEEEECSSSCHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhccCCEEEECCCCCHHHHHHHHHHHHh
Confidence            22221   1 11234789998 899999999987653

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.29  E-value=2.9e-11  Score=100.51  Aligned_cols=165  Identities=14%  Similarity=0.137  Sum_probs=89.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      ..+|.+|+|.|++||||||+++.|+..+...|.-++.+.        ++.++..+.....+.+......+  .+.  ...
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d--------~d~~~~~~~~~~~~~~~~~~~~~--~~~--~~~   89 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD--------GDNVRHGLNRDLSFKAEDRAENI--RRV--GEV   89 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE--------HHHHTTTTTTTCCSSHHHHHHHH--HHH--HHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec--------CchhhhHhhcccCcChHHHHHHH--HHH--HHH
Confidence            467999999999999999999999999986676433333        23333222222223332111100  010  011


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC------CCCcchHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG------GERYEHLEFQ  205 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R------~d~~e~~~~~  205 (259)
                      .......|..||.+..... ..+       .+.+....  ...+.+.|||++|++++.+|...+      ...+...   
T Consensus        90 ~~~~~~~~~~vi~~~~~~~-~~~-------r~~~~~~~--~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~---  156 (200)
T 3uie_A           90 AKLFADAGIICIASLISPY-RTD-------RDACRSLL--PEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGF---  156 (200)
T ss_dssp             HHHHHHTTCEEEEECCCCC-HHH-------HHHHHHTS--CTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSC---
T ss_pred             HHHHHhCCceEEEecCCch-HHH-------HHHHHHhc--CCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCC---
Confidence            2223356777776432110 000       12222211  122446899999999999997431      1111000   


Q ss_pred             HHHHHHHHhhhCCCeEEEcCC--CCHHHHHHHHHHHHHH
Q 025041          206 RKVAQCYQMLRDSSWKIIDAC--QSIEDVEKQLKEIVLD  242 (259)
Q Consensus       206 ~rv~~~y~~l~~~~~~vIDa~--~s~eev~~~I~~~i~~  242 (259)
                      ..+...|.... ...++||++  .++++++++|.+.+..
T Consensus       157 ~~~~~~~~~~~-~~~~~idt~~~~~~~e~v~~i~~~l~~  194 (200)
T 3uie_A          157 TGIDDPYEPPL-NCEISLGREGGTSPIEMAEKVVGYLDN  194 (200)
T ss_dssp             BTTTBCCCCCS-SCSEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCcCcCCC-CCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence            00112232211 245789986  5999999999998865

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.28  E-value=3e-11  Score=99.70  Aligned_cols=175  Identities=17%  Similarity=0.233  Sum_probs=91.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC----CCChHHHHHHHHHhC---CCCCCHHHHH-HHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD----RTTSVGQMISAYLSN---QSHLDDHTIH-LLFSA  123 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~----~~~~~g~~ir~~l~~---~~~~~~~~~~-ll~~a  123 (259)
                      ..++++|+|.|++||||||+++.|++.    |+.++....-.    .+.+  ..+.+.+.+   .+.++..... ..|..
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~----g~~~id~d~~~~~~~~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~   78 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW----GYPVLDLDALAARARENKE--EELKRLFPEAVVGGRLDRRALARLVFSD   78 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT----TCCEEEHHHHHHHHHHHTH--HHHHHHCGGGEETTEECHHHHHHHHTTS
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC----CCEEEcccHHHHHhcCChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCC
Confidence            356789999999999999999999985    56555321100    0000  112221110   1123221111 11100


Q ss_pred             -hHHHHH----------HHHHHHHhc-CCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhh
Q 025041          124 -NRWEKR----------SMMEAKLKA-GTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAER  191 (259)
Q Consensus       124 -~r~~~~----------~~i~~~l~~-g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R  191 (259)
                       .....+          ..+...... +..||+|...    .+..      .|       ...+|++|||++|++++.+|
T Consensus        79 ~~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~~----l~~~------~~-------~~~~d~~i~l~~~~e~~~~R  141 (203)
T 1uf9_A           79 PERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPL----LFEK------GW-------EGRLHGTLLVAAPLEERVRR  141 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECTT----TTTT------TC-------GGGSSEEEEECCCHHHHHHH
T ss_pred             HHHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEecc----eecc------Cc-------hhhCCEEEEEECCHHHHHHH
Confidence             000000          111111123 5788888531    1110      01       13478999999999999999


Q ss_pred             cCCCCCCcchHHHHHHHHHH---HHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCC
Q 025041          192 GGYGGERYEHLEFQRKVAQC---YQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGK  251 (259)
Q Consensus       192 ~~~R~d~~e~~~~~~rv~~~---y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~~  251 (259)
                      +..|+. +...++..++.+.   |......+ ++||++.+++++.++|.+.+..++...++|+
T Consensus       142 ~~~R~~-~~~~~~~~~i~~~~~~~~~~~~ad-~vId~~~~~~~~~~~i~~~~~~~~~~~~~~~  202 (203)
T 1uf9_A          142 VMARSG-LSREEVLARERAQMPEEEKRKRAT-WVLENTGSLEDLERALKAVLAELTGGATEGR  202 (203)
T ss_dssp             HHTTTC-CTTHHHHHHHTTSCCHHHHHHHCS-EEECCSSHHHHHHHHHHHHHHSCCC------
T ss_pred             HHHcCC-CCHHHHHHHHHHCCChhHHHHhCC-EEEECCCCHHHHHHHHHHHHHHHHhhhhccC
Confidence            877632 2223444444332   11111123 5899988999999999999887766655553

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.27  E-value=1.6e-10  Score=93.51  Aligned_cols=156  Identities=15%  Similarity=0.097  Sum_probs=84.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhC-----CC--CC--------CHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSN-----QS--HL--------DDHTIH  118 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~-----~~--~~--------~~~~~~  118 (259)
                      +|++|+|.|++||||||+++.|++.++.   ..+.+..        +.+++....     ..  .+        ......
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~---~~~~~~~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGV--------DSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRA   70 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSS---CEEEEEH--------HHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCC---CeEEecc--------chHhhhcchhhccchhhccccCCCccccchhHHH
Confidence            4689999999999999999999999853   2232210        111111000     00  00        111110


Q ss_pred             HHHHHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC
Q 025041          119 LLFSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE  197 (259)
Q Consensus       119 ll~~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d  197 (259)
                       +     +.. ...+...++.|..||+|..+...-...      ..+...+   ...+..+|||++|++++.+|+..|++
T Consensus        71 -~-----~~~~~~~~~~~~~~g~~vi~~~~~~~~~~~~------~~~~~~~---~~~~~~~v~l~~~~e~l~~R~~~r~~  135 (178)
T 1qhx_A           71 -L-----EGAWAEGVVAMARAGARIIIDDVFLGGAAAQ------ERWRSFV---GDLDVLWVGVRCDGAVAEGRETARGD  135 (178)
T ss_dssp             -H-----HHHHHHHHHHHHHTTCEEEEEECCTTTHHHH------HHHHHHH---TTCCEEEEEEECCHHHHHHHHHHTSS
T ss_pred             -H-----HHHHHHHHHHHHhcCCeEEEEeccccChHHH------HHHHHHh---cCCcEEEEEEECCHHHHHHHHHhhCC
Confidence             0     111 122344556788888886432111100      0122211   12355789999999999999977654


Q ss_pred             CcchHHHHHHHHHHHHhhhC--CCeEEEcCC-CCHHHHHHHHHHHH
Q 025041          198 RYEHLEFQRKVAQCYQMLRD--SSWKIIDAC-QSIEDVEKQLKEIV  240 (259)
Q Consensus       198 ~~e~~~~~~rv~~~y~~l~~--~~~~vIDa~-~s~eev~~~I~~~i  240 (259)
                      +....  .   ...+..+..  ...++||++ .++++++++|.+.+
T Consensus       136 ~~~~~--~---~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~l  176 (178)
T 1qhx_A          136 RVAGM--A---AKQAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             SCTTH--H---HHHTTGGGTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred             cccch--h---hhhchhhccCCCCcEEEECCCCCHHHHHHHHHHHh
Confidence            42221  1   112222221  234789986 59999999998654

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=99.27  E-value=8.5e-12  Score=109.22  Aligned_cols=116  Identities=21%  Similarity=0.258  Sum_probs=81.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME  133 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~  133 (259)
                      .+.+|+|+|.|||||+++++.|.+.++.+|+.|+.+..|..    .+.     ..  .+          ..|+.     .
T Consensus        74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~----eE~-----~~--~y----------lwR~~-----~  127 (289)
T 3rhf_A           74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTD----EEK-----SH--DF----------LWRIE-----K  127 (289)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCH----HHH-----TS--CT----------THHHH-----T
T ss_pred             CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCCh----hhh-----cC--CH----------HHHHH-----H
Confidence            68999999999999999999999999999999987777751    111     11  11          01221     1


Q ss_pred             HHHhcCCeEEEcccccchhhhhcCCCC-C-HHH------HHhhhc---cCCCCCEEEEEeCCHHHHHhhcCCC
Q 025041          134 AKLKAGTTLIVDRYSYSGVAFSSAKGI-D-IEW------CKAPEI---GLLAPDSVLYLDIPPEKAAERGGYG  195 (259)
Q Consensus       134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl-~-~~~------~~~~~~---~~~~PdlvI~Ld~~~e~~~~R~~~R  195 (259)
                      ..=..|.++|+||++|+...+....|. + .+|      +..++.   ..+...+.|||+++.++..+|+..|
T Consensus       128 ~lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R  200 (289)
T 3rhf_A          128 QVPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIAR  200 (289)
T ss_dssp             TCCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHH
T ss_pred             hCCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHH
Confidence            111579999999999988776654443 2 122      222232   3456678899999999999998765

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.27  E-value=6e-12  Score=104.93  Aligned_cols=70  Identities=21%  Similarity=0.167  Sum_probs=47.6

Q ss_pred             CCCCEEEEEeCCHHHHHhhcCCCCCCcch-H-HHHHHHHHHHHhh----hC--CCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          173 LAPDSVLYLDIPPEKAAERGGYGGERYEH-L-EFQRKVAQCYQML----RD--SSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       173 ~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~-~-~~~~rv~~~y~~l----~~--~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      ..||.+|||++|++++.+|+..|+...+. . .+..++...|...    ..  ..+++||++++++++.++|.+.+.+
T Consensus       128 ~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~  205 (207)
T 2qt1_A          128 TIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ  205 (207)
T ss_dssp             TTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred             HhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999998555311111 1 1222344444332    11  4678899999999999999988754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.25  E-value=7.5e-11  Score=95.64  Aligned_cols=66  Identities=15%  Similarity=0.198  Sum_probs=43.3

Q ss_pred             CCEEEEEeCCHHHHHhhcCCC--CCCcchHHHHHHHHHHHHhh---h-CCCeEEEcCC-CCHHHHHHHHHHHHH
Q 025041          175 PDSVLYLDIPPEKAAERGGYG--GERYEHLEFQRKVAQCYQML---R-DSSWKIIDAC-QSIEDVEKQLKEIVL  241 (259)
Q Consensus       175 PdlvI~Ld~~~e~~~~R~~~R--~d~~e~~~~~~rv~~~y~~l---~-~~~~~vIDa~-~s~eev~~~I~~~i~  241 (259)
                      .+++|||++|++++.+|+..|  .++..... .+.+.+.|.+.   . ....++||++ .++++++++|.+.+.
T Consensus        93 ~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~-~~~i~~~~~~r~~~y~~~~~~~Idt~~~~~eev~~~I~~~l~  165 (175)
T 1via_A           93 AGFCIYLKADFEYLKKRLDKDEISKRPLFYD-EIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEIKKVIK  165 (175)
T ss_dssp             GCEEEEEECCHHHHTTCCCGGGTTTSCTTCC-HHHHHHHHHHHHHHHHHHCSEEEECTTCCHHHHHHHHHHHHC
T ss_pred             CCEEEEEeCCHHHHHHHHhcccCCCCCCccc-HHHHHHHHHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHHHH
Confidence            468999999999999998765  23311100 12233333221   1 1245899998 899999999998874

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.24  E-value=1.1e-10  Score=94.15  Aligned_cols=64  Identities=22%  Similarity=0.188  Sum_probs=36.5

Q ss_pred             CCEEEEEeCCHHHHHhhcCCCCCC-c----ch-HHHHHH----HHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHH
Q 025041          175 PDSVLYLDIPPEKAAERGGYGGER-Y----EH-LEFQRK----VAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVL  241 (259)
Q Consensus       175 PdlvI~Ld~~~e~~~~R~~~R~d~-~----e~-~~~~~r----v~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~  241 (259)
                      .++++||++|++++.+|+..|..+ .    +. .+....    ....|...+   .++||++ .++++++++|.+.+.
T Consensus        97 ~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~a---~~~id~~~~~~~~~~~~i~~~l~  171 (173)
T 1kag_A           97 RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIA---DVTIRTDDQSAKVVANQIIHMLE  171 (173)
T ss_dssp             HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHC---SEEC-----CHHHHHHHHHHHHC
T ss_pred             CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhC---CEEEECCCCCHHHHHHHHHHHHH
Confidence            468999999999999999865321 0    11 122221    112343332   4789987 899999999998764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.23  E-value=1.3e-10  Score=102.18  Aligned_cols=153  Identities=8%  Similarity=0.034  Sum_probs=88.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC--C---CCCHHHHHHHHHHhHHHH-
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ--S---HLDDHTIHLLFSANRWEK-  128 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~--~---~~~~~~~~ll~~a~r~~~-  128 (259)
                      +++|+|.|++||||||+++.|++++.  |+.++  .        .+.++..+...  +   .+........     ... 
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~--~~~~i--~--------~D~~r~~~~~~~~g~~~~~~~~~~~~~-----~~~~   64 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNP--GFYNI--N--------RDDYRQSIMAHEERDEYKYTKKKEGIV-----TGMQ   64 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHST--TEEEE--C--------HHHHHHHHTTSCCCC---CCHHHHHHH-----HHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCC--CcEEe--c--------ccHHHHHhccCCcccccccchhhhhHH-----HHHH
Confidence            46899999999999999999998642  33222  1        12344433321  1   1222211111     011 


Q ss_pred             HHHHHHHH---hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHH
Q 025041          129 RSMMEAKL---KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQ  205 (259)
Q Consensus       129 ~~~i~~~l---~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~  205 (259)
                      ...+...+   ..|..||+|++..+.. +.       +.+..+......|+.+|||++|++++.+|+..|.....+.+..
T Consensus        65 ~~~~~~~l~~~~~g~~vi~d~~~~~~~-~~-------~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~e~i  136 (301)
T 1ltq_A           65 FDTAKSILYGGDSVKGVIISDTNLNPE-RR-------LAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVL  136 (301)
T ss_dssp             HHHHHHHTTSCTTCCEEEECSCCCCHH-HH-------HHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGGCCCHHHH
T ss_pred             HHHHHHHHhhccCCCEEEEeCCCCCHH-HH-------HHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCCCCCHHHH
Confidence            13455667   7788999998765421 11       1222222233456799999999999999998775332233444


Q ss_pred             HHHHHHHHhhhC----------CCeEEEcCCCCHHHH
Q 025041          206 RKVAQCYQMLRD----------SSWKIIDACQSIEDV  232 (259)
Q Consensus       206 ~rv~~~y~~l~~----------~~~~vIDa~~s~eev  232 (259)
                      ++..+.|.....          ...+++|.+++++++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iD~dgtl~~~  173 (301)
T 1ltq_A          137 RSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKM  173 (301)
T ss_dssp             HHHHHHHHHHHTCCCCCCCTTSCEEEEEETBTTTBCC
T ss_pred             HHHHHHHhcccCCcceeccccccceEEEeCCCCcccc
Confidence            444455554321          135667877665554

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.23  E-value=2.2e-11  Score=99.12  Aligned_cols=154  Identities=13%  Similarity=0.059  Sum_probs=80.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHH--HhCC-CCCCHHHHHHHHHHhHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAY--LSNQ-SHLDDHTIHLLFSANRWEKR  129 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~--l~~~-~~~~~~~~~ll~~a~r~~~~  129 (259)
                      .++++|+|+|++||||||+++.|++.++   +.++..         ++.+++.  +... ......    ++...+  ..
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~---~~~~~~---------d~~~~~~~~~~~~~~~~~~~----~~~~~~--~~   70 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKSG---LKYINV---------GDLAREEQLYDGYDEEYDCP----ILDEDR--VV   70 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHHC---CEEEEH---------HHHHHHHTCEEEEETTTTEE----EECHHH--HH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHhC---CeEEEH---------HHHHhhcchhhhhhhhhcCc----cCChHH--HH
Confidence            4678899999999999999999999984   333321         2333222  1000 000000    000000  01


Q ss_pred             HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc---hHHHHH
Q 025041          130 SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE---HLEFQR  206 (259)
Q Consensus       130 ~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e---~~~~~~  206 (259)
                      ..+...+..|..|| |.....        .+..          ..+|.+|||++|++++.+|+..|+...+   .....+
T Consensus        71 ~~~~~~~~~g~~vv-~~~~~~--------~~~~----------~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~  131 (180)
T 3iij_A           71 DELDNQMREGGVIV-DYHGCD--------FFPE----------RWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCE  131 (180)
T ss_dssp             HHHHHHHHHCCEEE-ECSCCT--------TSCG----------GGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCEEE-Eechhh--------hcch----------hcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            12334455576655 422110        0000          1278999999999999999987642211   111112


Q ss_pred             HHHHHHHhh---hCCCeEEEc-CCCCHHHH---HHHHHHHHHHHH
Q 025041          207 KVAQCYQML---RDSSWKIID-ACQSIEDV---EKQLKEIVLDQV  244 (259)
Q Consensus       207 rv~~~y~~l---~~~~~~vID-a~~s~eev---~~~I~~~i~~~l  244 (259)
                      .+...|.+.   .... .+|| ++.+++++   +++|.+.+.+..
T Consensus       132 ~~~~~~~~~~~~y~~~-~~i~~~~~~~~ev~~~v~~i~~~l~~~~  175 (180)
T 3iij_A          132 IFQVLYEEATASYKEE-IVHQLPSNKPEELENNVDQILKWIEQWI  175 (180)
T ss_dssp             HTTHHHHHHHHHSCGG-GEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCC-eEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            233334332   1122 3444 46899999   555655555543

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.19  E-value=4.5e-11  Score=99.16  Aligned_cols=69  Identities=23%  Similarity=0.258  Sum_probs=47.0

Q ss_pred             CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHh--hhCCCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQM--LRDSSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~--l~~~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                      .+|.+|||++|++++.+|+..|+  +...++.+++...+..  .....-++||++.+++++.++|.+.+....
T Consensus       123 ~~~~~i~l~~~~e~~~~Rl~~R~--~~~~~~~~~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~~  193 (204)
T 2if2_A          123 NYDKLIVVYAPYEVCKERAIKRG--MSEEDFERRWKKQMPIEEKVKYADYVIDNSGSIEETYKQVKKVYEELT  193 (204)
T ss_dssp             GSSEEEEECCCHHHHHHHHHHTC--CCHHHHHHHHTTSCCHHHHGGGCSEECCCSSCHHHHHHHHHHHHHTTC
T ss_pred             hCCEEEEEECCHHHHHHHHHHcC--CCHHHHHHHHHhCCChhHHHhcCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence            37899999999999999997763  2223444444332211  111122689999999999999999886543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.18  E-value=4e-09  Score=87.48  Aligned_cols=67  Identities=13%  Similarity=0.243  Sum_probs=44.1

Q ss_pred             CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHH------HHHhhhCCCeEEEcCCCCHH----HHHHHHHHHHHHH
Q 025041          174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQ------CYQMLRDSSWKIIDACQSIE----DVEKQLKEIVLDQ  243 (259)
Q Consensus       174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~------~y~~l~~~~~~vIDa~~s~e----ev~~~I~~~i~~~  243 (259)
                      ..|.+|||++|+++..+|+..|+.. ...+..+++..      .|. .+  + ++||++.+++    ++.++|.+.+...
T Consensus       123 ~~d~vi~l~~~~e~~~~Rl~~R~~~-~~e~~~~r~~~q~~~~~~~~-~a--d-~vIdn~~~~~~~~~~~~~~i~~~~~~~  197 (206)
T 1jjv_A          123 LCDRILVVDVSPQTQLARSAQRDNN-NFEQIQRIMNSQVSQQERLK-WA--D-DVINNDAELAQNLPHLQQKVLELHQFY  197 (206)
T ss_dssp             GCSEEEEEECCHHHHHHHHC------CHHHHHHHHHHSCCHHHHHH-HC--S-EEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCEEEEEECCHHHHHHHHHHcCCC-CHHHHHHHHHhcCChHHHHH-hC--C-EEEECCCCccccHHHHHHHHHHHHHHH
Confidence            3589999999999999999877422 11233333321      121 22  3 7899988999    9999999888765


Q ss_pred             Hh
Q 025041          244 VT  245 (259)
Q Consensus       244 l~  245 (259)
                      +.
T Consensus       198 ~~  199 (206)
T 1jjv_A          198 LQ  199 (206)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.14  E-value=2.5e-10  Score=94.33  Aligned_cols=168  Identities=14%  Similarity=0.196  Sum_probs=87.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE-EEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHh------
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV-ELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSAN------  124 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v-~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~------  124 (259)
                      +.+|.+|+|.||+||||||+++.|...+....+.. ...+.+..+...+  + .++    ..++....-+....      
T Consensus         4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~----~~~~~~~~~~~~~~~~~~~~   76 (205)
T 3tr0_A            4 MNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEG--V-DYF----FIDETRFQAMVKEGAFLEHA   76 (205)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBT--T-TBE----ECCHHHHHHHHHHTCEEEEE
T ss_pred             CCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcC--c-eEE----eccHHHHHHHHhcCcEEeee
Confidence            45789999999999999999999998763100000 0111111000000  0 000    00111000000000      


Q ss_pred             -----HHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC
Q 025041          125 -----RWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER  198 (259)
Q Consensus       125 -----r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~  198 (259)
                           .+.. ...+...+..|..+|+|..+..              +..+....+.++.++++..|++++.+|+..|+..
T Consensus        77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~--------------~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~  142 (205)
T 3tr0_A           77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQG--------------ARQIRELFPPALSIFILPPSIEALRERLIKRRQD  142 (205)
T ss_dssp             EETTEEEEEEHHHHHHHHHTTCEEEEECCHHH--------------HHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTS
T ss_pred             eeecccccchHHHHHHHHHcCCeEEEEECHHH--------------HHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCC
Confidence                 0000 1234566778888988853321              1122233445655555566799999999877532


Q ss_pred             cchHHHHHHHHHHHHhhh---CCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          199 YEHLEFQRKVAQCYQMLR---DSSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       199 ~e~~~~~~rv~~~y~~l~---~~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                      .+ .+..+++..++.+..   ..+++++| + +++++.++|.+.+...
T Consensus       143 ~~-~~i~~rl~~~~~~~~~~~~~d~vi~n-~-~~~~~~~~l~~~i~~~  187 (205)
T 3tr0_A          143 DT-AIIEQRLALAREEMAHYKEFDYLVVN-D-NFDQAVQNLIHIISAE  187 (205)
T ss_dssp             CS-STHHHHHHHHHHHHTTGGGCSEEEEC-S-SHHHHHHHHHHHHHHH
T ss_pred             CH-HHHHHHHHHHHHHHhcccCCCEEEEC-C-CHHHHHHHHHHHHHHH
Confidence            22 134445555444332   24555554 4 8999999999988753

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.14  E-value=1.2e-10  Score=97.53  Aligned_cols=171  Identities=14%  Similarity=0.213  Sum_probs=87.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEE-EEecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHH
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVE-LWRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLL  120 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~-~~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll  120 (259)
                      ++.+|.+|+|.||+||||||+++.|.+.+.. .+..+. ..+.|..+...        .+.+.+.+..+. +-.+.   .
T Consensus         4 m~~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~-~le~~---~   79 (208)
T 3tau_A            4 MTERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGK-MLEYA---E   79 (208)
T ss_dssp             -CCCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTC-EEEEE---E
T ss_pred             ccCCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCc-EEEEE---E
Confidence            3468999999999999999999999998753 222221 22333211000        111222211110 00000   0


Q ss_pred             HHHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeC-CHHHHHhhcCCCCCC
Q 025041          121 FSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDI-PPEKAAERGGYGGER  198 (259)
Q Consensus       121 ~~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~-~~e~~~~R~~~R~d~  198 (259)
                      +..+.+.. ...+...+++|..||+|-.+..              ...+....+.+ .+||+.. +++++.+|+..|+..
T Consensus        80 ~~~~~yg~~~~~i~~~l~~g~~vild~~~~g--------------~~~~~~~~~~~-~~i~i~~ps~~~l~~Rl~~R~~~  144 (208)
T 3tau_A           80 YVGNYYGTPLEYVEEKLAAGVDIFLEIEVQG--------------AMQVRKAMPEG-IFIFLTPPDLSELKNRIIGRGTE  144 (208)
T ss_dssp             ETTEEEEEEHHHHHHHHHTTCCEEEECCHHH--------------HHHHHHHCTTS-EEEEEECTTTTTSSCC-------
T ss_pred             EccccCCCcHHHHHHHHHcCCeEEEEeeHHH--------------HHHHHHhCCCe-EEEEEeCCCHHHHHHHHHhcCCC
Confidence            00000000 1234566778988998853321              11222334444 4455554 488999999877532


Q ss_pred             cchHHHHHHHHHHHHhh---hCCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          199 YEHLEFQRKVAQCYQML---RDSSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       199 ~e~~~~~~rv~~~y~~l---~~~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                       ...+..+++..+..++   ...+++++|.  ++++++++|.++|...
T Consensus       145 -~~e~i~~Rl~~~~~e~~~~~~~d~vivN~--~~~~~~~~l~~~i~~~  189 (208)
T 3tau_A          145 -SMEVVEERMETAKKEIEMMASYDYAVVND--VVANAVQKIKGIVETE  189 (208)
T ss_dssp             -CCHHHHHHHHHHHHHHHHGGGSSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHHHHhhccCCEEEECc--CHHHHHHHHHHHHHHH
Confidence             1235566665555433   2256777764  5999999999988753

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.14  E-value=1.9e-09  Score=93.26  Aligned_cols=164  Identities=13%  Similarity=0.118  Sum_probs=85.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH--HHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR--SMM  132 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~--~~i  132 (259)
                      |..|+|.|++||||||+++.|++.++   +.++..         +..++... .+..+.....  .+....+...  ..+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg---~~~~d~---------d~~~~~~~-~g~~i~~i~~--~~ge~~fr~~e~~~l  112 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG---YTFFDC---------DTLIEQAM-KGTSVAEIFE--HFGESVFREKETEAL  112 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEH---------HHHHHHHS-TTSCHHHHHH--HHCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC---CcEEeC---------cHHHHHHh-cCccHHHHHH--HhCcHHHHHHHHHHH
Confidence            88999999999999999999999984   433321         22233322 1111111000  0000001011  123


Q ss_pred             HHHHhc-CCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC--CC-c-ch------
Q 025041          133 EAKLKA-GTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG--ER-Y-EH------  201 (259)
Q Consensus       133 ~~~l~~-g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~--d~-~-e~------  201 (259)
                      ...... ...||.++.   +...      ..+-...+     ..+++|||++|++++.+|+..+.  .+ . ..      
T Consensus       113 ~~l~~~~~~~Via~Gg---G~v~------~~~~~~~l-----~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~  178 (250)
T 3nwj_A          113 KKLSLMYHQVVVSTGG---GAVI------RPINWKYM-----HKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDT  178 (250)
T ss_dssp             HHHHHHCSSEEEECCG---GGGG------SHHHHHHH-----TTSEEEEEECCHHHHHHHHHC----------------C
T ss_pred             HHHHhhcCCcEEecCC---Ceec------CHHHHHHH-----hCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccc
Confidence            333333 457776642   1111      01111111     13799999999999999986421  11 0 00      


Q ss_pred             -HHHHHHHHHHHHh---hh-CCCeEE-----------EcCC-CCHHHHHHHHHHHHHHHHhhh
Q 025041          202 -LEFQRKVAQCYQM---LR-DSSWKI-----------IDAC-QSIEDVEKQLKEIVLDQVTAC  247 (259)
Q Consensus       202 -~~~~~rv~~~y~~---l~-~~~~~v-----------IDa~-~s~eev~~~I~~~i~~~l~~~  247 (259)
                       .+..+++...|.+   +. ....++           ||++ .++++++++|.+.+...+..+
T Consensus       179 ~~~~~~~l~~l~~eR~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~~  241 (250)
T 3nwj_A          179 YTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKE  241 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhHHHHHHHHHHHHHHHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence             0112333333332   11 133433           3764 799999999999999887654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.14  E-value=8.8e-10  Score=95.07  Aligned_cols=72  Identities=17%  Similarity=0.212  Sum_probs=44.1

Q ss_pred             CCCCCEEEEEeCCHHHHHhhcCC-----CC-CCcchHHHHHHHHHH----H-HhhhC----CCeEEEcCC-CCHHHHHHH
Q 025041          172 LLAPDSVLYLDIPPEKAAERGGY-----GG-ERYEHLEFQRKVAQC----Y-QMLRD----SSWKIIDAC-QSIEDVEKQ  235 (259)
Q Consensus       172 ~~~PdlvI~Ld~~~e~~~~R~~~-----R~-d~~e~~~~~~rv~~~----y-~~l~~----~~~~vIDa~-~s~eev~~~  235 (259)
                      ++..+++|||++|+++..+|...     +. ..++  +..+.+.+.    . ..+..    .+.++||++ .++++++++
T Consensus       160 ~~~~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~--~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~  237 (252)
T 4e22_A          160 FPDAPVKIFLDASSQERAHRRMLQLQERGFNVNFE--RLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQ  237 (252)
T ss_dssp             STTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHH--HHHHHHC------------CCCCCTTEEEEECSSSCHHHHHHH
T ss_pred             cCCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHH
Confidence            35568999999999999888643     21 1222  222222111    1 11111    235889986 499999999


Q ss_pred             HHHHHHHHHh
Q 025041          236 LKEIVLDQVT  245 (259)
Q Consensus       236 I~~~i~~~l~  245 (259)
                      |.+.+...+.
T Consensus       238 I~~~i~~~~~  247 (252)
T 4e22_A          238 ALAYAQRILA  247 (252)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHhh
Confidence            9999887653

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.12  E-value=5e-09  Score=89.67  Aligned_cols=73  Identities=18%  Similarity=0.183  Sum_probs=42.2

Q ss_pred             CCCCCEEEEEeCCHHHHHhhcCC----CCCCcchHHHHHHHHHHH----H-hhhC----CCeEEEcCC-CCHHHHHHHHH
Q 025041          172 LLAPDSVLYLDIPPEKAAERGGY----GGERYEHLEFQRKVAQCY----Q-MLRD----SSWKIIDAC-QSIEDVEKQLK  237 (259)
Q Consensus       172 ~~~PdlvI~Ld~~~e~~~~R~~~----R~d~~e~~~~~~rv~~~y----~-~l~~----~~~~vIDa~-~s~eev~~~I~  237 (259)
                      ++..++.|||++|+++..+|...    ++......+....+.+.-    . .+..    .+-++||++ .+++++++.|.
T Consensus       143 ~pda~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~  222 (233)
T 3r20_A          143 LPDADVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLL  222 (233)
T ss_dssp             CTTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHH
T ss_pred             cCCCCEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHH
Confidence            34457999999999999988753    112111112222222111    1 1211    233899985 79999999999


Q ss_pred             HHHHHHH
Q 025041          238 EIVLDQV  244 (259)
Q Consensus       238 ~~i~~~l  244 (259)
                      +.+...+
T Consensus       223 ~~i~~~~  229 (233)
T 3r20_A          223 DLVTAQA  229 (233)
T ss_dssp             HHC----
T ss_pred             HHHHHhh
Confidence            9886654

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.11  E-value=7.1e-10  Score=90.89  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=24.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      ..+++.|+|.|++||||||+++.|++.
T Consensus         7 ~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            7 QPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            356889999999999999999999998

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.11  E-value=8.2e-09  Score=87.76  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=44.3

Q ss_pred             CCCEEEEEeCCHHHHHhhc----CCCCCCcchHHHHHHHHH-HHHh-------hhC-CCeEEEcCC-CCHHHHHHHHHHH
Q 025041          174 APDSVLYLDIPPEKAAERG----GYGGERYEHLEFQRKVAQ-CYQM-------LRD-SSWKIIDAC-QSIEDVEKQLKEI  239 (259)
Q Consensus       174 ~PdlvI~Ld~~~e~~~~R~----~~R~d~~e~~~~~~rv~~-~y~~-------l~~-~~~~vIDa~-~s~eev~~~I~~~  239 (259)
                      ..|++|||++|+++..+|+    ..|+......+..+.+.+ .+..       +.. ...++||++ .++++++++|.+.
T Consensus       152 ~~d~vi~L~a~~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s~eev~~~I~~~  231 (236)
T 1q3t_A          152 QAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKIKAE  231 (236)
T ss_dssp             GCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCCCCCHHHHHHHHHHH
Confidence            4589999999999999996    334321111122223322 2211       111 245899998 5999999999998


Q ss_pred             HHHH
Q 025041          240 VLDQ  243 (259)
Q Consensus       240 i~~~  243 (259)
                      +...
T Consensus       232 l~~~  235 (236)
T 1q3t_A          232 AEKR  235 (236)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            7653

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.10  E-value=3.4e-09  Score=89.32  Aligned_cols=165  Identities=18%  Similarity=0.164  Sum_probs=94.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-------cCCCCChHHHHHHHHH-----hCCCCCCHHHHH-HHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-------FPDRTTSVGQMISAYL-----SNQSHLDDHTIH-LLF  121 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-------~p~~~~~~g~~ir~~l-----~~~~~~~~~~~~-ll~  121 (259)
                      -.-|.++|.+||||||+++.|++ +   |++++..+       .|+  ++.-+.|.+.+     ...+.++..... ++|
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~-~---g~~vidaD~ia~~l~~~~--~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF   82 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAA-R---GASLVDTDLIAHRITAPA--GLAMPAIEQTFGPAFVAADGSLDRARMRALIF   82 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH-T---TCEEEEHHHHHHHHTSTT--CTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH-C---CCcEEECcHHHHHHhcCC--cHHHHHHHHHhChhhcCCCCCCcHHHHHHHHh
Confidence            35699999999999999999987 4   77777532       222  22223333332     223456554332 233


Q ss_pred             HH-hHHHHH---------HHHHHHHh--cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHH
Q 025041          122 SA-NRWEKR---------SMMEAKLK--AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAA  189 (259)
Q Consensus       122 ~a-~r~~~~---------~~i~~~l~--~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~  189 (259)
                      .. .....+         ..+...+.  .+.+||+|--+.    |..     ..|.       ...|.+|++++|+++..
T Consensus        83 ~d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL----~E~-----~~~~-------~~~D~vi~V~ap~e~r~  146 (210)
T 4i1u_A           83 SDEDARRRLEAITHPLIRAETEREARDAQGPYVIFVVPLL----VES-----RNWK-------ARCDRVLVVDCPVDTQI  146 (210)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTC----TTC-----HHHH-------HHCSEEEEEECCHHHHH
T ss_pred             CCHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecc----ccc-----CCcc-------ccCCeEEEEECCHHHHH
Confidence            21 111111         12222222  234667663221    210     1111       23799999999999999


Q ss_pred             hhcCCCCCCcchHHHHHHHHHH-----HHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHHHHh
Q 025041          190 ERGGYGGERYEHLEFQRKVAQC-----YQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLDQVT  245 (259)
Q Consensus       190 ~R~~~R~d~~e~~~~~~rv~~~-----y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~~l~  245 (259)
                      +|+..|+ .+...+...++..+     +...++   .+||++ ++++++.++|.+.+..++.
T Consensus       147 ~Rl~~Rd-g~s~eea~~ri~~Q~~~eek~~~AD---~VIdN~~gsle~l~~qV~~l~~~~~~  204 (210)
T 4i1u_A          147 ARVMQRN-GFTREQVEAIIARQATREARLAAAD---DVIVNDAATPDALAVQVDALHQRYLA  204 (210)
T ss_dssp             HHHHHHH-CCCHHHHHHHHHHSCCHHHHHHTCS---EEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcC-CCCHHHHHHHHHHcCChHHHHHhCC---EEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            9998763 23223444444332     112222   688999 9999999999998887654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.09  E-value=1.6e-08  Score=83.47  Aligned_cols=68  Identities=15%  Similarity=0.109  Sum_probs=44.4

Q ss_pred             CCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHH---HHHhh-hC-CCeEEEcCCC-CHHHHHHHHHHHHH
Q 025041          173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQ---CYQML-RD-SSWKIIDACQ-SIEDVEKQLKEIVL  241 (259)
Q Consensus       173 ~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~---~y~~l-~~-~~~~vIDa~~-s~eev~~~I~~~i~  241 (259)
                      +.+|++|||++|+++..+|+..|.. ....+..+.+.+   .|... .. ..+++||++. +++++.++|.+.+.
T Consensus       134 ~~~d~~i~l~a~~e~~~~R~~~r~~-~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~  207 (208)
T 3ake_A          134 PEAAHKFYLTASPEVRAWRRARERP-QAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR  207 (208)
T ss_dssp             TTCSEEEEEECCHHHHHHHHHHTSS-SCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred             cCCcEEEEEECCHHHHHHHHHhhcc-cCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence            4578999999999999999876532 111222222222   22111 12 3458999985 99999999988763

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.06  E-value=2.8e-09  Score=88.59  Aligned_cols=159  Identities=12%  Similarity=0.140  Sum_probs=83.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChH---HHHHHHHHhC----CCCCCHHHHH-HHHH-H
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSV---GQMISAYLSN----QSHLDDHTIH-LLFS-A  123 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~---g~~ir~~l~~----~~~~~~~~~~-ll~~-a  123 (259)
                      ..-.+|.|+|++||||||+++.|++.+   |+.++..+.-. ....   -+.+.+.+-.    ++.++..... ..|. .
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~l---g~~vid~D~~~-~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~   85 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNKY---GAHVVNVDRIG-HEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESR   85 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHH---CCEEEEHHHHH-HHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhc---CCEEEECcHHH-HHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCH
Confidence            356899999999999999999999987   56665422100 0000   0111111110    2223322111 1111 0


Q ss_pred             h---HHHH------HHHHHHHHhc-CCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcC
Q 025041          124 N---RWEK------RSMMEAKLKA-GTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGG  193 (259)
Q Consensus       124 ~---r~~~------~~~i~~~l~~-g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~  193 (259)
                      .   ..+.      ...+...+.. +.+||+|....    +..      .|.       ...|.+||+++|+++..+|+.
T Consensus        86 ~~~~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~pll----~e~------~~~-------~~~d~vi~v~a~~e~r~~Rli  148 (192)
T 2grj_A           86 ENLKKLELLVHPLMKKRVQEIINKTSGLIVIEAALL----KRM------GLD-------QLCDHVITVVASRETILKRNR  148 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECTTT----TTT------TGG-------GGCSEEEEEECCHHHHHHHCS
T ss_pred             HHHHHHHhhhCHHHHHHHHHHHHHcCCEEEEEEece----eec------ChH-------HhCCEEEEEECCHHHHHHHHH
Confidence            0   0000      0112222222 55788874211    110      111       235899999999999999982


Q ss_pred             CCCCCcchHHHHHHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          194 YGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       194 ~R~d~~e~~~~~~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                      .      .   +  +...|.+-....-++||++++++++.++|.+.+...
T Consensus       149 ~------~---q--~~~~~~~~~~~AD~vI~n~~~~~~l~~~v~~~~~~l  187 (192)
T 2grj_A          149 E------A---D--RRLKFQEDIVPQGIVVANNSTLEDLEKKVEEVMKLV  187 (192)
T ss_dssp             S------H---H--HHHTTCTTCCCCSEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             H------h---c--CCchhhhHHhcCCEEEECCCCHHHHHHHHHHHHHHH
Confidence            1      0   0  000011111122367898899999999999887654

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.05  E-value=2.9e-09  Score=89.00  Aligned_cols=66  Identities=5%  Similarity=-0.065  Sum_probs=42.0

Q ss_pred             CEEEEEeCCHHHHHhhcCCCCCC-cch-HHH----HHHHHHHHHhhhC-------CCeEEEcCC-CCHHHHHHHHHHHHH
Q 025041          176 DSVLYLDIPPEKAAERGGYGGER-YEH-LEF----QRKVAQCYQMLRD-------SSWKIIDAC-QSIEDVEKQLKEIVL  241 (259)
Q Consensus       176 dlvI~Ld~~~e~~~~R~~~R~d~-~e~-~~~----~~rv~~~y~~l~~-------~~~~vIDa~-~s~eev~~~I~~~i~  241 (259)
                      .+.|||++|+++..+|+..+... .+. .+.    .+.-...|....+       ..-++||++ .+++++++.|.+.+.
T Consensus       118 ~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~  197 (201)
T 3fdi_A          118 MISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYID  197 (201)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHH
T ss_pred             eEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHH
Confidence            48999999999999998643211 111 111    1122234544311       124789986 699999999998775

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.05  E-value=2e-10  Score=94.93  Aligned_cols=169  Identities=14%  Similarity=0.184  Sum_probs=70.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeE-EEEecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSV-ELWRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLFS  122 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v-~~~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~~  122 (259)
                      .+|.+|+|.|++||||||+++.|+..+.. .|+.+ ...+.|..+...        .+.+..+...+..+..    ..+.
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~   79 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEY----AEYV   79 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEE----EEET
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEE----EeEC
Confidence            47899999999999999999999987722 22222 112222100000        0111121111100000    0000


Q ss_pred             HhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCC-EEEEEe-CCHHHHHhhcCCCCCCc
Q 025041          123 ANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPD-SVLYLD-IPPEKAAERGGYGGERY  199 (259)
Q Consensus       123 a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~Pd-lvI~Ld-~~~e~~~~R~~~R~d~~  199 (259)
                      .+.+.. ...+...+..|..||+|..+...           ..+.   ...  || .++|+. .+++++.+|+..|++. 
T Consensus        80 ~~~~g~~~~~i~~~l~~g~~vv~d~~~~~~-----------~~~~---~~~--~~~~~i~~~~~~~~~~~~Rl~~R~~~-  142 (207)
T 2j41_A           80 GNYYGTPVQYVKDTMDEGHDVFLEIEVEGA-----------KQVR---KKF--PDALFIFLAPPSLEHLRERLVGRGTE-  142 (207)
T ss_dssp             TEEEEEEHHHHHHHHHTTCEEEEECCGGGH-----------HHHH---HHC--TTSEEEEEECCC---------------
T ss_pred             CeecCCCHHHHHHHHHcCCeEEEEECHHHH-----------HHHH---Hhc--CCeEEEEEECCCHHHHHHHHHhcCCC-
Confidence            000000 12345566778899999753210           1111   112  45 344443 4577999999877532 


Q ss_pred             chHHHHHHHHHHHHhhh---CCCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          200 EHLEFQRKVAQCYQMLR---DSSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       200 e~~~~~~rv~~~y~~l~---~~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                      ...++.+++...+....   ..+++ |+++ +++++.++|.+.+....
T Consensus       143 ~~~~~~~rl~~~~~~~~~~~~~d~v-I~n~-~~e~~~~~i~~~l~~~~  188 (207)
T 2j41_A          143 SDEKIQSRINEARKEVEMMNLYDYV-VVND-EVELAKNRIQCIVEAEH  188 (207)
T ss_dssp             -------------CGGGGGGGCSEE-EECS-SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhccccCCEE-EECC-CHHHHHHHHHHHHHHhh
Confidence            22345556655543322   23454 5555 89999999999987654

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.02  E-value=1.7e-09  Score=93.06  Aligned_cols=70  Identities=14%  Similarity=0.243  Sum_probs=43.0

Q ss_pred             CCEEEEEeCCHHHHHhhcCCCC-----CCcch--HHHHHHHHHHHHhh----hC-CCeEEE----cCCCCHHHHHHHHHH
Q 025041          175 PDSVLYLDIPPEKAAERGGYGG-----ERYEH--LEFQRKVAQCYQML----RD-SSWKII----DACQSIEDVEKQLKE  238 (259)
Q Consensus       175 PdlvI~Ld~~~e~~~~R~~~R~-----d~~e~--~~~~~rv~~~y~~l----~~-~~~~vI----Da~~s~eev~~~I~~  238 (259)
                      +|++|||++|++++.+|+..|.     ...+.  ..+..+....|...    .. .+ ++|    |++.+++++.++|.+
T Consensus       151 ~d~vi~l~~~~e~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad-~vI~~~id~~~s~e~v~~~I~~  229 (252)
T 1uj2_A          151 FQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYAD-VIIPRGADNLVAINLIVQHIQD  229 (252)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCS-EEEETGGGCHHHHHHHHHHHHH
T ss_pred             cCeeEEEeCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCc-EEEecCCCChhHHHHHHHHHHH
Confidence            5899999999999999986542     11121  11222222224321    11 23 345    888899999999999


Q ss_pred             HHHHHHh
Q 025041          239 IVLDQVT  245 (259)
Q Consensus       239 ~i~~~l~  245 (259)
                      .+...+.
T Consensus       230 ~l~~~~~  236 (252)
T 1uj2_A          230 ILNGGPS  236 (252)
T ss_dssp             HHHC---
T ss_pred             HHccchh
Confidence            8876554

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.99  E-value=1.6e-09  Score=89.63  Aligned_cols=165  Identities=17%  Similarity=0.191  Sum_probs=90.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEE-EEecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHHHHhH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVE-LWRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLFSANR  125 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~-~~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~~a~r  125 (259)
                      +.|+|.||+||||||+++.|.+.+.. -++++. .++.|..+..-        -+.+.++..++. +-.++   .+.-+.
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~-flE~~---~~~g~~   77 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNE-FIEWA---QFSGNY   77 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTC-EEEEE---EETTEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCC-EEEEE---EEcCce
Confidence            46999999999999999999888753 233333 34555422111        122222222221 00000   000011


Q ss_pred             HHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCC-CCCEEEEEeCCHHHHHhhcCCCCCCcchHH
Q 025041          126 WEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL-APDSVLYLDIPPEKAAERGGYGGERYEHLE  203 (259)
Q Consensus       126 ~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~-~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~  203 (259)
                      |.. ...+...+++|..||+|-.+.              -+.++....+ .+..++.+-.+.+++.+|+..|+..- ..+
T Consensus        78 YGt~~~~v~~~l~~g~~vil~id~~--------------g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~-~e~  142 (186)
T 1ex7_A           78 YGSTVASVKQVSKSGKTCILDIDMQ--------------GVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTET-EES  142 (186)
T ss_dssp             EEEEHHHHHHHHHHTSEEEEECCHH--------------HHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSC-HHH
T ss_pred             eeeecceeeehhhCCCEEEecCCHH--------------HHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCC-HHH
Confidence            111 234566778899999874322              1222222222 34455566667889999998775432 234


Q ss_pred             HHHHHHHHHHhhh-----CCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          204 FQRKVAQCYQMLR-----DSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       204 ~~~rv~~~y~~l~-----~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      ..+|+..+-.++.     ..+++++|.  ++++.+++|.++|.
T Consensus       143 i~~Rl~~a~~e~~~~~~~~fD~vIvNd--dle~a~~~l~~iI~  183 (186)
T 1ex7_A          143 INKRLSAAQAELAYAETGAHDKVIVND--DLDKAYKELKDFIF  183 (186)
T ss_dssp             HHHHHHHHHHHHHHHTTTCSSEEEECS--SHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhccccCCcEEEECc--CHHHHHHHHHHHHH
Confidence            5566665554442     235677764  69999999988764

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=98.95  E-value=1.4e-08  Score=84.79  Aligned_cols=70  Identities=24%  Similarity=0.290  Sum_probs=43.8

Q ss_pred             CCCCCEEEEEeCCHHHHHhhcC----CCCCCcchHHHHHHHHHH-HH-------hhhC-CCeEEEcCC-CCHHHHHHHHH
Q 025041          172 LLAPDSVLYLDIPPEKAAERGG----YGGERYEHLEFQRKVAQC-YQ-------MLRD-SSWKIIDAC-QSIEDVEKQLK  237 (259)
Q Consensus       172 ~~~PdlvI~Ld~~~e~~~~R~~----~R~d~~e~~~~~~rv~~~-y~-------~l~~-~~~~vIDa~-~s~eev~~~I~  237 (259)
                      ++..|++|||++|++++.+|+.    .|+......+..+++.+. |.       .+.. ...++||++ .++++++++|.
T Consensus       133 ~~~~~~vi~l~a~~e~~~~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~ee~~~~I~  212 (219)
T 2h92_A          133 LPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEIL  212 (219)
T ss_dssp             CTTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCHHHHHHHHH
T ss_pred             cCCCCEEEEEECCHHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCCHHHHHHHHH
Confidence            3456899999999999999963    233210112333333322 11       1111 244899987 59999999999


Q ss_pred             HHHH
Q 025041          238 EIVL  241 (259)
Q Consensus       238 ~~i~  241 (259)
                      +.+.
T Consensus       213 ~~l~  216 (219)
T 2h92_A          213 AMVS  216 (219)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=98.93  E-value=3.7e-08  Score=83.71  Aligned_cols=67  Identities=10%  Similarity=0.042  Sum_probs=43.0

Q ss_pred             CEEEEEeCCHHHHHhhcCCCCCC-cc-hHH----HHHHHHHHHHhhh-----C--CCeEEEcCC-CCHHHHHHHHHHHHH
Q 025041          176 DSVLYLDIPPEKAAERGGYGGER-YE-HLE----FQRKVAQCYQMLR-----D--SSWKIIDAC-QSIEDVEKQLKEIVL  241 (259)
Q Consensus       176 dlvI~Ld~~~e~~~~R~~~R~d~-~e-~~~----~~~rv~~~y~~l~-----~--~~~~vIDa~-~s~eev~~~I~~~i~  241 (259)
                      .+.|||++|+++..+|+..+... .+ ..+    ..+.....|....     +  ..-++||++ .+++++++.|.+.+.
T Consensus       138 ~~~VfL~A~~e~r~~Ri~~~~~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~  217 (223)
T 3hdt_A          138 LIRIFVYTDKVKKVQRVMEVDCIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIR  217 (223)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHH
T ss_pred             eEEEEEECCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHH
Confidence            58999999999999998643221 11 111    1122233454321     1  123789986 699999999999886


Q ss_pred             H
Q 025041          242 D  242 (259)
Q Consensus       242 ~  242 (259)
                      .
T Consensus       218 ~  218 (223)
T 3hdt_A          218 L  218 (223)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.90  E-value=1.2e-08  Score=85.11  Aligned_cols=166  Identities=14%  Similarity=0.162  Sum_probs=81.7

Q ss_pred             cCCCCCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEE-EEecCCCCChH--------HHHHHHHHhCCCCCCHHHH
Q 025041           48 IGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVE-LWRFPDRTTSV--------GQMISAYLSNQSHLDDHTI  117 (259)
Q Consensus        48 ~~~~~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~-~~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~  117 (259)
                      ++....+|.+|+|.||+||||||+++.|.+.+.. ..+.+. .++.|..+..-        -+.+++.+..+. +-.++ 
T Consensus        12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~-fle~~-   89 (197)
T 3ney_A           12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANE-FLEFG-   89 (197)
T ss_dssp             ----CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTC-EEEEE-
T ss_pred             ccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhh-hhhhh-
Confidence            5556678999999999999999999999987752 112222 23444321100        111222221110 00000 


Q ss_pred             HHHHHHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC
Q 025041          118 HLLFSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG  196 (259)
Q Consensus       118 ~ll~~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~  196 (259)
                        .+..+.|.. ...+...+++|..||+|-.+..              +.++....+.| ++||+. ||..  +|..   
T Consensus        90 --~~~~n~YGt~~~~v~~~l~~G~~vildid~qg--------------~~~~~~~~~~~-~~Ifi~-Pps~--~~~~---  146 (197)
T 3ney_A           90 --SYQGNMFGTKFETVHQIHKQNKIAILDIEPQT--------------LKIVRTAELSP-FIVFIA-PTDQ--GTQT---  146 (197)
T ss_dssp             --EETTEEEEEEHHHHHHHHHTTCEEEEECCGGG--------------HHHHCSTTTCE-EEEEEE-ECCB--SSCC---
T ss_pred             --hhhceecccchhhHHHHHhcCCeEEEEECHHH--------------HHHHHhcCCCc-eEEEEe-CCCc--cccc---
Confidence              000001111 1346677889999999854331              22222233344 567776 6654  1111   


Q ss_pred             CCcchHHHHHHHHHHHHhhh-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          197 ERYEHLEFQRKVAQCYQMLR-DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       197 d~~e~~~~~~rv~~~y~~l~-~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      +..  ....++....-.+.. ..++++||.  ++|+.++++.++|..
T Consensus       147 e~~--~~i~~r~~~~~~~~~~~fd~vivNd--~l~~a~~~l~~ii~~  189 (197)
T 3ney_A          147 EAL--QQLQKDSEAIRSQYAHYFDLSLVNN--GVDETLKKLQEAFDQ  189 (197)
T ss_dssp             HHH--HHHHHHHHHHHHHHGGGCSEEEEES--CHHHHHHHHHHHHHH
T ss_pred             hHH--HHHHHHHHHHHHhhccCCCEEEECC--CHHHHHHHHHHHHHH
Confidence            111  122222222111111 256788875  599999999988854

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.81  E-value=6.5e-08  Score=78.96  Aligned_cols=158  Identities=15%  Similarity=0.148  Sum_probs=76.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-HHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-SMME  133 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-~~i~  133 (259)
                      |.+|+|.|++||||||+++.|+..+.  | .+ .+.        ++.+..... .+.+.+... .......++.+ ....
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~--g-~~-~i~--------~d~~~~~~~-~~~~~~~~~-~~~~~~~~~~l~~~~~   67 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLD--N-SA-YIE--------GDIINHMVV-GGYRPPWES-DELLALTWKNITDLTV   67 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSS--S-EE-EEE--------HHHHHTTCC-TTCCCGGGC-HHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccC--C-eE-EEc--------ccchhhhhc-cccccCccc-hhHHHHHHHHHHHHHH
Confidence            67899999999999999999987432  2 12 222        222221111 111111110 00000001111 1122


Q ss_pred             HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhh--hccCCCCCEEEEEeCCHHHHHhhcCCCCCC--cchHHHHHHHH
Q 025041          134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAP--EIGLLAPDSVLYLDIPPEKAAERGGYGGER--YEHLEFQRKVA  209 (259)
Q Consensus       134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~--~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~e~~~~~~rv~  209 (259)
                      .....+..+|+|.... ....        +.+..+  .......-.+++|++|++++.+|...|..+  .+. ..... .
T Consensus        68 ~~~~~~~~~ild~~~~-~~~~--------~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~-~~~~~-~  136 (189)
T 2bdt_A           68 NFLLAQNDVVLDYIAF-PDEA--------EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGE-RCLEL-V  136 (189)
T ss_dssp             HHHHTTCEEEEESCCC-HHHH--------HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CG-GGGHH-H
T ss_pred             HHHhcCCcEEEeeccC-HHHH--------HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCH-HHHHH-H
Confidence            2334566788886422 1110        111111  112222345789999999999999876422  111 11222 2


Q ss_pred             HHHHhhhCCCeEEEcCC-C---CHHHHHHHHH
Q 025041          210 QCYQMLRDSSWKIIDAC-Q---SIEDVEKQLK  237 (259)
Q Consensus       210 ~~y~~l~~~~~~vIDa~-~---s~eev~~~I~  237 (259)
                      +.+..+......+||++ .   +++++.++|.
T Consensus       137 ~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~  168 (189)
T 2bdt_A          137 EEFESKGIDERYFYNTSHLQPTNLNDIVKNLK  168 (189)
T ss_dssp             HHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH
T ss_pred             HHHhhcCCCccEEEeCCCCChhhHHHHHHHHh
Confidence            33333333344667765 5   6777777766

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.80  E-value=1.3e-08  Score=82.98  Aligned_cols=164  Identities=13%  Similarity=0.110  Sum_probs=83.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC---CCCCHHHHHHHHHHhHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ---SHLDDHTIHLLFSANRWEK  128 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~---~~~~~~~~~ll~~a~r~~~  128 (259)
                      ..+|.+|+|.|++||||||+++.|+..+.   ...+.+.    +    +.+.......   +.+......-..   -.+.
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~---~g~i~i~----~----d~~~~~~~~~~~~~~~~~~~~~~~~---v~~~   71 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANLPG---VPKVHFH----S----DDLWGYIKHGRIDPWLPQSHQQNRM---IMQI   71 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTCSS---SCEEEEC----T----THHHHTCCSSCCCTTSSSHHHHHHH---HHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhccC---CCeEEEc----c----cchhhhhhcccccCCccchhhhhHH---HHHH
Confidence            45789999999999999999999988632   2223322    1    1111111111   011110000000   0011


Q ss_pred             HH-HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCc-chHHHHH
Q 025041          129 RS-MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERY-EHLEFQR  206 (259)
Q Consensus       129 ~~-~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~-e~~~~~~  206 (259)
                      +. ........|..+++|..+. ..      ++  +.+..    ...+-.++++..+.+++.+|+..|.... .+.+..+
T Consensus        72 l~~~~~~~~~~~~~~~~~~~~~-~~------~l--~~~~~----~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~  138 (191)
T 1zp6_A           72 AADVAGRYAKEGYFVILDGVVR-PD------WL--PAFTA----LARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVA  138 (191)
T ss_dssp             HHHHHHHHHHTSCEEEECSCCC-TT------TT--HHHHT----TCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHH
T ss_pred             HHHHHHHHhccCCeEEEeccCc-HH------HH--HHHHh----cCCCeEEEEecCCHHHHHHHHHhcCCCccCCHHHHH
Confidence            10 0111234566677776432 10      01  11111    1223368999999999999987653222 1223333


Q ss_pred             HHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 025041          207 KVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD  242 (259)
Q Consensus       207 rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~  242 (259)
                      .+.+.+..+.....++||++ .++++++++|.+.+..
T Consensus       139 ~~~~~~~~l~~~~~~~i~t~~~~~~~~~~~i~~~l~~  175 (191)
T 1zp6_A          139 DLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQS  175 (191)
T ss_dssp             HHHHHTTCCGGGGGGEEECTTCCTTTTTTTTHHHHHH
T ss_pred             HHHHHHhccCcccccEEECCCCCHHHHHHHHHHHHHh
Confidence            33333322222223567775 7999999999888754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.79  E-value=6.5e-08  Score=92.49  Aligned_cols=166  Identities=16%  Similarity=0.146  Sum_probs=75.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCC-CeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLG-HSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g-~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      .+|.+|+|.|++||||||+++.|+..+...+ ..+..++        ++.+++.+.....+........+  .+..  ..
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lD--------gD~~~~~l~~~l~f~~~~r~~~~--r~i~--~v  434 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLD--------GDIVRRHLSSELGFSKAHRDVNV--RRIG--FV  434 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEES--------SHHHHHHTTSSCCCSHHHHHHHH--HHHH--HH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEEC--------CcHHHHhhccccCCCHHHHHHHH--HHHH--HH
Confidence            4789999999999999999999999997543 2343232        23333322222223321100000  0100  11


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC  211 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~  211 (259)
                      .+.....+.++|..........        .+....+..... +.+.|||++|++++.+|...+  -|.. .-...+.+.
T Consensus       435 ~q~l~~~~~ivi~~~~~~~~~~--------r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~r~--l~~~-~~~~~i~~l  502 (552)
T 3cr8_A          435 ASEITKNRGIAICAPIAPYRQT--------RRDVRAMIEAVG-GFVEIHVATPIETCESRDRKG--LYAK-ARAGLIPEF  502 (552)
T ss_dssp             HHHHHHTTCEEEECCCCCCHHH--------HHHHHHHHHTTS-EEEEEEECC----------------------------
T ss_pred             HHHHHhcCCEEEEecCCccHHH--------HHHHHHHHHHcC-CEEEEEEcCCHHHHHHhcccc--cccc-ccHhHHHHH
Confidence            1222345777777542100000        011222222222 458999999999999997531  1110 000112222


Q ss_pred             HHh---hh--CCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 025041          212 YQM---LR--DSSWKIIDAC-QSIEDVEKQLKEIVLD  242 (259)
Q Consensus       212 y~~---l~--~~~~~vIDa~-~s~eev~~~I~~~i~~  242 (259)
                      |..   +.  ...-++||++ .++++++++|.+.+.+
T Consensus       503 ~~~r~~~e~P~~adl~Idt~~~s~~e~v~~Il~~L~~  539 (552)
T 3cr8_A          503 TGVSDPYEVPETPELAIDTTGLAIDEAVQQILLKLEH  539 (552)
T ss_dssp             ----CCCCCCSSCSEEECCSSCCHHHHHHHHHHHHHH
T ss_pred             HhccccccCCCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence            211   11  1123788986 7999999999998864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.79  E-value=2.5e-08  Score=84.34  Aligned_cols=170  Identities=16%  Similarity=0.153  Sum_probs=68.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHH-HHHhhCCCeEEE-EecCCCCChHH--------HHHHHHHhCCCCCCHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLL-SYLEGLGHSVEL-WRFPDRTTSVG--------QMISAYLSNQSHLDDHTIHLLFS  122 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~-~~l~~~g~~v~~-~~~p~~~~~~g--------~~ir~~l~~~~~~~~~~~~ll~~  122 (259)
                      .+|.+|+|.||+||||||+++.|. ..+......+.. .+.|..+...|        ..+..+...+. +....   .+.
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~-~~~~~---~~~  100 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGE-IIEHA---EVF  100 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTC-EEEEE---EET
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCc-eehhh---hhc
Confidence            578999999999999999999999 766321101111 11222110000        11111111100 00000   000


Q ss_pred             HhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccC-CCCCEEEEEeCCHHHHHhhcCCCCCCcc
Q 025041          123 ANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL-LAPDSVLYLDIPPEKAAERGGYGGERYE  200 (259)
Q Consensus       123 a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~-~~PdlvI~Ld~~~e~~~~R~~~R~d~~e  200 (259)
                      .+.+.. ...+...+..|..+|+|-.+.              ....+...+ +.+..++....+++++.+|+..|+. ..
T Consensus       101 ~~~~~~~~~~i~~~~~~~~~vild~~~~--------------g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~-~~  165 (231)
T 3lnc_A          101 GNFYGVPRKNLEDNVDKGVSTLLVIDWQ--------------GAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRA-DD  165 (231)
T ss_dssp             TEEEEEECTTHHHHHHHTCEEEEECCHH--------------HHHHHHHHSGGGEEEEEEECSCHHHHHHC---------
T ss_pred             cccCCCCHHHHHHHHHcCCeEEEEcCHH--------------HHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCC-CC
Confidence            000000 012344455677777762211              111112222 2233344455678889999987732 22


Q ss_pred             hHHHHHHHHHHHHhhh---CCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          201 HLEFQRKVAQCYQMLR---DSSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       201 ~~~~~~rv~~~y~~l~---~~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                      ..+..+++..+..+..   ..+++++ ++ +++++.+++.+++...
T Consensus       166 ~~~i~~rl~~~~~~~~~~~~~d~vI~-n~-~~e~~~~~l~~~i~~~  209 (231)
T 3lnc_A          166 SEVVEARLKGAAFEISHCEAYDYVIV-NE-DIEETADRISNILRAE  209 (231)
T ss_dssp             ------CHHHHHHHHTTGGGSSEEEE-CS-SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCeEEEE-Cc-CHHHHHHHHHHHHHHH
Confidence            2234445555444332   2355555 44 7999999999988764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.78  E-value=1e-07  Score=83.76  Aligned_cols=121  Identities=12%  Similarity=0.093  Sum_probs=65.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE---EecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH-
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL---WRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK-  128 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~---~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~-  128 (259)
                      .+|.+|+|.|++||||||+++.|++.+.. ++..+.   ++.+.  ..+.+.++.+..    ..+...     ...+.. 
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~~-~~~~Is~D~~R~~~--~~~~~~~~~~~~----~a~~~~-----~~~~~~~   98 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQG-NVIVIDNDTFKQQH--PNFDELVKLYEK----DVVKHV-----TPYSNRM   98 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTT-CCEEECTHHHHTTS--TTHHHHHHHHGG----GCHHHH-----HHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEechHhHHhc--hhhHHHHHHccc----hhhhhh-----hHHHHHH
Confidence            46899999999999999999999998742 222221   11111  011111222111    111000     111111 


Q ss_pred             -HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHH----HhhcC
Q 025041          129 -RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKA----AERGG  193 (259)
Q Consensus       129 -~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~----~~R~~  193 (259)
                       ...+...+..|..||+|..+.....+        ..+.........+..+++|++|++++    .+|+.
T Consensus        99 ~~~~v~~~l~~g~~vIld~~~~~~~~~--------~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~  160 (287)
T 1gvn_B           99 TEAIISRLSDQGYNLVIEGTGRTTDVP--------IQTATMLQAKGYETKMYVMAVPKINSYLGTIERYE  160 (287)
T ss_dssp             HHHHHHHHHHHTCCEEECCCCCCSHHH--------HHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCeEEEECCCCCHHHH--------HHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHH
Confidence             12345566778889999765432111        11212222234455679999999999    88863

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.68  E-value=1.1e-07  Score=77.56  Aligned_cols=28  Identities=18%  Similarity=0.184  Sum_probs=25.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+|.+|+|.||+||||||+++.|...+.
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4688999999999999999999998764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.68  E-value=1.3e-07  Score=80.05  Aligned_cols=170  Identities=16%  Similarity=0.176  Sum_probs=87.0

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhh--CCCeEEEE-ecCCCCCh--H------HHHHHHHHhCCCCCCHHHHHH
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEG--LGHSVELW-RFPDRTTS--V------GQMISAYLSNQSHLDDHTIHL  119 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~--~g~~v~~~-~~p~~~~~--~------g~~ir~~l~~~~~~~~~~~~l  119 (259)
                      .+.+|.+++|.||+||||||+++.|...+..  ....+... +.|..+..  .      .+.+..+...+ .+-.   .+
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~-~f~E---~~   87 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRD-AFLE---HA   87 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTT-CEEE---EE
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcC-HHHH---HH
Confidence            3678999999999999999999999987752  11122222 22211000  0      00111110000 0000   00


Q ss_pred             HHHHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEE-eCCHHHHHhhcCCCCC
Q 025041          120 LFSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYL-DIPPEKAAERGGYGGE  197 (259)
Q Consensus       120 l~~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~L-d~~~e~~~~R~~~R~d  197 (259)
                      .+....+.. ...+...++.|.++|+|  ++            ..-...+...++. ..+|++ .-+.+.+.+|+..|+.
T Consensus        88 ~~~~~~yg~~~~~v~~~l~~G~illLD--LD------------~~~~~~i~~~l~~-~~tI~i~th~~~~l~~Rl~~rG~  152 (219)
T 1s96_A           88 EVFGNYYGTSREAIEQVLATGVDVFLD--ID------------WQGAQQIRQKMPH-ARSIFILPPSKIELDRRLRGRGQ  152 (219)
T ss_dssp             EETTEEEEEEHHHHHHHHTTTCEEEEE--CC------------HHHHHHHHHHCTT-CEEEEEECSSHHHHHHHHHTTSC
T ss_pred             HHHhccCCCCHHHHHHHHhcCCeEEEE--EC------------HHHHHHHHHHccC-CEEEEEECCCHHHHHHHHHHcCC
Confidence            000000000 12456677889999999  22            1222222222333 345555 4477888899866652


Q ss_pred             CcchHHHHHHHHHHHHhhh---CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          198 RYEHLEFQRKVAQCYQMLR---DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       198 ~~e~~~~~~rv~~~y~~l~---~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      . ...+..+++..+-.++.   ...++++|  .++++.++++.++|..
T Consensus       153 ~-~~e~i~~rl~~a~~e~~~~~~~d~~i~N--d~l~~a~~~l~~ii~~  197 (219)
T 1s96_A          153 D-SEEVIAKRMAQAVAEMSHYAEYDYLIVN--DDFDTALTDLKTIIRA  197 (219)
T ss_dssp             S-CHHHHHHHHHHHHHHHTTGGGSSEEEEC--SSHHHHHHHHHHHHHH
T ss_pred             C-CHHHHHHHHHHHHHHHhhccCCCEEEEC--cCHHHHHHHHHHHHHH
Confidence            2 12345556655444433   24666665  4799999999998864

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.66  E-value=2.5e-08  Score=92.13  Aligned_cols=134  Identities=12%  Similarity=0.002  Sum_probs=78.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      ..++.+|+|.|++||||||+++.|++.++   +.++  .. +   .    +          ..+..          ....
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~---~~~i--~~-D---~----~----------~~~~~----------~~~~  301 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHV--NR-D---T----L----------GSWQR----------CVSS  301 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGGT---CEEC--CG-G---G----S----------CSHHH----------HHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcC---cEEE--cc-c---h----H----------HHHHH----------HHHH
Confidence            35678999999999999999999988773   3222  21 0   0    0          00000          0112


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC-----CcchHHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE-----RYEHLEFQR  206 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d-----~~e~~~~~~  206 (259)
                      +...+.+|..||+|....+....        ..+..+......+..+|||++|++++.+|+..|..     .....+.+.
T Consensus       302 ~~~~l~~g~~vIiD~~~~~~~~r--------~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~  373 (416)
T 3zvl_A          302 CQAALRQGKRVVIDNTNPDVPSR--------ARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMF  373 (416)
T ss_dssp             HHHHHHTTCCEEEESCCCSHHHH--------HHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHH
T ss_pred             HHHHHhcCCcEEEeCCCCCHHHH--------HHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHH
Confidence            34456778889999765432111        11222222334567899999999999999876521     111345556


Q ss_pred             HHHHHHHhhh--C--CCeEEEcCC
Q 025041          207 KVAQCYQMLR--D--SSWKIIDAC  226 (259)
Q Consensus       207 rv~~~y~~l~--~--~~~~vIDa~  226 (259)
                      ++...|+...  +  ..++.|+-.
T Consensus       374 ~~~~~~e~P~~~E~fd~v~~v~~~  397 (416)
T 3zvl_A          374 SYRKQFEPPTLAEGFLEILEIPFR  397 (416)
T ss_dssp             HHHHHCCCCCGGGTCSEEEEECCC
T ss_pred             HHHHhcCCCCcccCCcEEEEEecc
Confidence            6666665432  1  234556643

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.65  E-value=2.9e-08  Score=85.43  Aligned_cols=29  Identities=17%  Similarity=0.197  Sum_probs=26.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+|+|.|++||||||+++.|++.++
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45688999999999999999999999885

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.53  E-value=1.1e-06  Score=72.82  Aligned_cols=39  Identities=28%  Similarity=0.428  Sum_probs=33.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+|.+|+|.|++||||||+++.|...+...|..+....
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~   57 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH   57 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence            457899999999999999999999999987777766543

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=98.50  E-value=2.2e-06  Score=81.36  Aligned_cols=38  Identities=26%  Similarity=0.468  Sum_probs=33.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+.+|++.|++||||||+++.|+++|+..++.+..++
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s   70 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN   70 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence            45689999999999999999999999998887776554

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.25  E-value=1.6e-05  Score=65.60  Aligned_cols=28  Identities=25%  Similarity=0.302  Sum_probs=23.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+|.+++|.||+||||||+++.|...+.
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4688999999999999999999998775

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.24  E-value=7.6e-06  Score=69.67  Aligned_cols=29  Identities=24%  Similarity=0.485  Sum_probs=26.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+|+|.|+.||||||+++.|+..++
T Consensus        22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           22 SMRPFLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             -CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45789999999999999999999999885

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=98.08  E-value=2.1e-05  Score=65.62  Aligned_cols=33  Identities=18%  Similarity=0.166  Sum_probs=27.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHS   85 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~   85 (259)
                      .+.++|+|+|.+||||+|+++.|.+.++..++.
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~   41 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCA   41 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEE
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHcCCCCce
Confidence            356799999999999999999999988543333

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.96  E-value=6.4e-06  Score=73.91  Aligned_cols=28  Identities=25%  Similarity=0.324  Sum_probs=25.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .++++|+|.||.||||||++..|+++++
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            3668999999999999999999999885

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.87  E-value=0.00022  Score=66.53  Aligned_cols=38  Identities=29%  Similarity=0.412  Sum_probs=31.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++.+|++.|++||||||+++.|++.+...+++...+.
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~   74 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN   74 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence            35678999999999999999999999987777666543

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=97.72  E-value=0.00036  Score=61.39  Aligned_cols=163  Identities=12%  Similarity=0.111  Sum_probs=85.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEE-EEecCCCCCh---------HHHHHHHHHhCCCCCCHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVE-LWRFPDRTTS---------VGQMISAYLSNQSHLDDHTIHLL  120 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~-~~~~p~~~~~---------~g~~ir~~l~~~~~~~~~~~~ll  120 (259)
                      +..|++|+|.||   ||+|+++.|.+.+.. -++++. .++.|..+..         --+.+......+. +-.++   .
T Consensus       102 ~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~-flE~~---~  174 (295)
T 1kjw_A          102 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHK-FIEAG---Q  174 (295)
T ss_dssp             CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTC-EEEEE---E
T ss_pred             CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCC-cEEEE---E
Confidence            457889999998   799999999987752 234443 3455542211         0122222222221 00000   0


Q ss_pred             HHHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCC-HHHHHhhcCCCCCC
Q 025041          121 FSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIP-PEKAAERGGYGGER  198 (259)
Q Consensus       121 ~~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~-~e~~~~R~~~R~d~  198 (259)
                      +..+.|.. ...|...+++|..||+|-.+..              +.++......| ++||+..| ++++.+ +..|+..
T Consensus       175 ~~g~~YGt~~~~V~~~~~~G~~vildid~~g--------------~~~l~~~~~~p-i~IfI~pps~~~L~~-L~~R~t~  238 (295)
T 1kjw_A          175 YNSHLYGTSVQSVREVAEQGKHCILDVSANA--------------VRRLQAAHLHP-IAIFIRPRSLENVLE-INKRITE  238 (295)
T ss_dssp             ETTEEEEEEHHHHHHHHHTTCEEEECCCTTH--------------HHHHHHTTCCC-EEEEECCSSHHHHHH-HCTTSCH
T ss_pred             EcCcEeeeeHHHHHHHHhcCCeEEEEeCHHH--------------HHHHHhcccCC-eEEEEECCCHHHHHH-HHhcCCH
Confidence            00001111 2346677788999999843321              11222223456 88898877 555544 7666432


Q ss_pred             cchHHHHHHHHHHHH-hh--h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          199 YEHLEFQRKVAQCYQ-ML--R-DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       199 ~e~~~~~~rv~~~y~-~l--~-~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                         .+..+++..+-. ++  . ...++++| + ++++.++++.++|..
T Consensus       239 ---~~i~~rl~~a~~~e~~~~~~fd~vivN-d-~le~a~~~l~~ii~~  281 (295)
T 1kjw_A          239 ---EQARKAFDRATKLEQEFTECFSAIVEG-D-SFEEIYHKVKRVIED  281 (295)
T ss_dssp             ---HHHHHHHHHHHHHHHHHGGGCSEEECC-S-SHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHhccccCeEEEEC-c-CHHHHHHHHHHHHHh
Confidence               234445444321 22  1 13555443 3 799999999988864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.72  E-value=1.6e-05  Score=69.80  Aligned_cols=38  Identities=8%  Similarity=0.119  Sum_probs=28.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++.+|+|.|++||||||+++.|++.++..|+.+..+.
T Consensus         3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~   40 (290)
T 1a7j_A            3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIE   40 (290)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEee
Confidence            36789999999999999999999999986666554443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.66  E-value=0.0015  Score=52.25  Aligned_cols=115  Identities=17%  Similarity=0.212  Sum_probs=59.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-HH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-SM  131 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-~~  131 (259)
                      .+|-+++|.|++||||||+++.+.     .|..+.  .        ++.++.++.... .........     ++.. ..
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~-----~~~~~~--~--------~d~~~g~~~~~~-~~~~~~~~~-----~~~~~~~   65 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHF-----KPTEVI--S--------SDFCRGLMSDDE-NDQTVTGAA-----FDVLHYI   65 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHS-----CGGGEE--E--------HHHHHHHHCSST-TCGGGHHHH-----HHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHc-----cCCeEE--c--------cHHHHHHhcCcc-cchhhHHHH-----HHHHHHH
Confidence            478999999999999999999743     122221  1        233444433211 010000000     0011 11


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccC-CCCCEEEEEeCCHHHHHhhcCCCCC
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL-LAPDSVLYLDIPPEKAAERGGYGGE  197 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~-~~PdlvI~Ld~~~e~~~~R~~~R~d  197 (259)
                      ....+..|..++.|......-. +      .+++ .+...+ ..| -+++||-|...+-.|...|.+
T Consensus        66 ~~~~~~~g~~~~~~~~~~~s~g-~------~qrv-~iAral~~~p-~~lllDEPt~~Ld~~~~~R~~  123 (171)
T 4gp7_A           66 VSKRLQLGKLTVVDATNVQESA-R------KPLI-EMAKDYHCFP-VAVVFNLPEKVCQERNKNRTD  123 (171)
T ss_dssp             HHHHHHTTCCEEEESCCCSHHH-H------HHHH-HHHHHTTCEE-EEEEECCCHHHHHHHHHTCSS
T ss_pred             HHHHHhCCCeEEEECCCCCHHH-H------HHHH-HHHHHcCCcE-EEEEEeCCHHHHHHHHhcccC
Confidence            2233456777777765432111 0      1222 122223 334 688899999998877665543

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.64  E-value=0.00037  Score=61.26  Aligned_cols=166  Identities=14%  Similarity=0.124  Sum_probs=85.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEE-EecCCCCChH---------HHHHHHHHhCCCCCCHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVEL-WRFPDRTTSV---------GQMISAYLSNQSHLDDHTIHLLF  121 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~-~~~p~~~~~~---------g~~ir~~l~~~~~~~~~~~~ll~  121 (259)
                      ...+.|||.||   ||+|+++.|.+.+... ++++.+ ++.|..+..-         -+.+.....++. +-.++   .+
T Consensus        98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~-flE~a---~~  170 (292)
T 3tvt_A           98 NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHL-FIEAG---QY  170 (292)
T ss_dssp             SSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTC-EEEEE---EE
T ss_pred             CCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCc-eEEEE---EE
Confidence            56678999988   5999999999887642 445543 4444322110         122222222211 00000   00


Q ss_pred             HHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCC-HHHHHhhcCCCCCCc
Q 025041          122 SANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIP-PEKAAERGGYGGERY  199 (259)
Q Consensus       122 ~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~-~e~~~~R~~~R~d~~  199 (259)
                      ..+.|.. ...+...+++|..||+|=-+              +-+.++....+.| ++||+..| .+++.+|+..|++.-
T Consensus       171 ~gn~YGT~~~~V~~~~~~gk~viLdid~--------------qg~~~lk~~~~~p-i~IFI~PpS~e~L~~r~~~r~~e~  235 (292)
T 3tvt_A          171 NDNLYGTSVASVREVAEKGKHCILDVSG--------------NAIKRLQVAQLYP-VAVFIKPKSVDSVMEMNRRMTEEQ  235 (292)
T ss_dssp             TTEEEEEEHHHHHHHHHHTCEEEECCCT--------------HHHHHHHHTTCCC-EEEEECCSCHHHHHHTCTTSCTTH
T ss_pred             ccceeEEehHHHHHHHHcCCcEEEeccc--------------hhhhhcccccccc-eEEEEECCCHHHHHHHHhCCCchh
Confidence            0001111 23566777889999998322              1233333444556 66777664 566677776554421


Q ss_pred             chHHHHHHHHHHHHhhhC-CCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          200 EHLEFQRKVAQCYQMLRD-SSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       200 e~~~~~~rv~~~y~~l~~-~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                       ..+...+....-.+..+ ..++++|  .++|+.+++|.++|...
T Consensus       236 -~~~~~~r~~k~e~e~~~~fD~vIvN--ddle~a~~~l~~iI~~e  277 (292)
T 3tvt_A          236 -AKKTYERAIKMEQEFGEYFTGVVQG--DTIEEIYSKVKSMIWSQ  277 (292)
T ss_dssp             -HHHHHHHHHHHHHHHTTTCSEEECC--SSHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhhhhhCCEEEEC--cCHHHHHHHHHHHHHHh
Confidence             12233333222122222 3455554  36999999998887654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.57  E-value=9e-05  Score=60.04  Aligned_cols=36  Identities=17%  Similarity=0.149  Sum_probs=31.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++|+|.|++||||||++..|...|...|+++..+.
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik   39 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   39 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence            468999999999999999999999998898876554

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.57  E-value=4.8e-05  Score=62.68  Aligned_cols=28  Identities=21%  Similarity=0.258  Sum_probs=25.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+|.+|+|.|++||||||+++.|+..++
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4788999999999999999999999886

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.55  E-value=9e-05  Score=61.27  Aligned_cols=32  Identities=28%  Similarity=0.390  Sum_probs=28.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCC
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLG   83 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g   83 (259)
                      ..+|.+|+|.|++||||||+++.|...+...|
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g   50 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQG   50 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence            35789999999999999999999999997544

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.45  E-value=7.1e-05  Score=64.19  Aligned_cols=25  Identities=20%  Similarity=0.187  Sum_probs=23.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ++|+|.|++||||||+++.|++.++
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC
Confidence            4899999999999999999999885

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.40  E-value=0.00021  Score=58.03  Aligned_cols=37  Identities=22%  Similarity=0.228  Sum_probs=31.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +-++|+|.|++||||||+++.|...+...|+++-.+.
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~   41 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK   41 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence            3568999999999999999999999988888765443

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.33  E-value=0.00016  Score=58.17  Aligned_cols=37  Identities=19%  Similarity=0.162  Sum_probs=30.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh-hCCCeEEEE
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE-GLGHSVELW   89 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~-~~g~~v~~~   89 (259)
                      .+|..++|.|++|+||||+++.++..+. ..|..+..+
T Consensus        36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~   73 (180)
T 3ec2_A           36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF   73 (180)
T ss_dssp             GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            3578999999999999999999999886 567655543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.32  E-value=9.8e-05  Score=61.77  Aligned_cols=29  Identities=21%  Similarity=0.171  Sum_probs=24.8

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ...+|.+++|.||+||||||+++.|...+
T Consensus        19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45689999999999999999999999876

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.31  E-value=0.00026  Score=55.73  Aligned_cols=38  Identities=13%  Similarity=0.181  Sum_probs=32.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      +|..++|.|++|+||||+++.+...+...|.+++.+..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~   72 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA   72 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence            68889999999999999999999999777877766653

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.27  E-value=0.0002  Score=62.76  Aligned_cols=32  Identities=13%  Similarity=0.147  Sum_probs=28.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCC
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLG   83 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g   83 (259)
                      ..++.+|+|.|++||||||+++.|.+.+...|
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g   59 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY   59 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence            35788999999999999999999999997543

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.26  E-value=0.00037  Score=57.73  Aligned_cols=37  Identities=14%  Similarity=0.001  Sum_probs=32.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++..|+|.|++|+||||+++.+++.+...+..+..+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~   87 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP   87 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            5678999999999999999999999988777776655

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.26  E-value=0.00067  Score=60.52  Aligned_cols=40  Identities=23%  Similarity=0.409  Sum_probs=34.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP   92 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p   92 (259)
                      .+|.+|+|.|+.||||||+++.|+..+...+.++.....+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D  166 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD  166 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence            5789999999999999999999999998877777665433

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.25  E-value=0.0006  Score=60.23  Aligned_cols=38  Identities=26%  Similarity=0.442  Sum_probs=33.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+|.+|+|.|++||||||++..|+..+...|.++....
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~  139 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA  139 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence            46889999999999999999999999987787776654

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.23  E-value=0.00042  Score=56.51  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=30.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      +|.++++.|++|+||||++-.++.++...|.++..+
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~   37 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF   37 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            478999999999999999988888877778777654

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.21  E-value=0.0018  Score=63.58  Aligned_cols=163  Identities=11%  Similarity=0.104  Sum_probs=85.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEE-EEecCCCCChH---------HHHHHHHHhCCCCCCHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVE-LWRFPDRTTSV---------GQMISAYLSNQSHLDDHTIHLLF  121 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~-~~~~p~~~~~~---------g~~ir~~l~~~~~~~~~~~~ll~  121 (259)
                      ..+++|+|.||   ||+|+++.|.+.+.. .++.+. .++.|..+..-         -+.+.+...++. +-.++   .+
T Consensus       529 ~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~-flE~~---~~  601 (721)
T 2xkx_A          529 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHK-FIEAG---QY  601 (721)
T ss_pred             CCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCC-ceEEE---EE
Confidence            46789999999   499999999987753 233333 23444311110         112222222211 10000   00


Q ss_pred             HHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc
Q 025041          122 SANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE  200 (259)
Q Consensus       122 ~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e  200 (259)
                      .-+.|.. ...|+..+++|.+||+|-.+              .-+.++......| ++||+..|.-..++++..|+..  
T Consensus       602 ~g~~YGt~~~~v~~~~~~g~~~ildi~~--------------~~~~~l~~~~~~p-~~ifi~pps~~~L~~l~~R~t~--  664 (721)
T 2xkx_A          602 NSHLYGTSVQSVREVAEQGKHCILDVSA--------------NAVRRLQAAHLHP-IAIFIRPRSLENVLEINKRITE--  664 (721)
T ss_pred             CCccceeeHHHHHHHHHCCCcEEEeCCH--------------HHHHHHHhcccCC-EEEEEeCCcHHHHHHHhccCCH--
Confidence            0112222 24467778899999998421              1122222223456 8899987644444456655432  


Q ss_pred             hHHHHHHHHHHHH-hhh--C-CCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          201 HLEFQRKVAQCYQ-MLR--D-SSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       201 ~~~~~~rv~~~y~-~l~--~-~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                       .+..+++..+-+ ++.  . ..++++| + ++|+.++++.++|..
T Consensus       665 -~~~~~rl~~a~~~e~~~~~~fd~vi~N-d-~l~~a~~~l~~~i~~  707 (721)
T 2xkx_A          665 -EQARKAFDRATKLEQEFTECFSAIVEG-D-SFEEIYHKVKRVIED  707 (721)
T ss_pred             -HHHHHHHHHHHHHHHhccccCcEEEEC-c-CHHHHHHHHHHHHHh
Confidence             234445544421 221  1 3455444 3 799999999888764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.19  E-value=0.00081  Score=62.42  Aligned_cols=38  Identities=21%  Similarity=0.423  Sum_probs=34.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      ++.+|+|.|++|+||||++..|+..|...|.+|..+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~  136 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS  136 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            58899999999999999999999999989999876653

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.15  E-value=0.0011  Score=58.21  Aligned_cols=39  Identities=18%  Similarity=0.158  Sum_probs=33.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~~~~   91 (259)
                      .+|.+|+|.|+.|+||||++..|+..+.. .|.+|.....
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~  142 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT  142 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence            46889999999999999999999999974 7988876553

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.14  E-value=0.00023  Score=67.30  Aligned_cols=29  Identities=21%  Similarity=0.156  Sum_probs=26.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+|..|+|.|++||||||+++.|+++|..
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            36789999999999999999999999986

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.12  E-value=0.00072  Score=55.64  Aligned_cols=38  Identities=16%  Similarity=0.252  Sum_probs=34.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+|+++++.|+.||||||.+-.++.++...|..|..+.
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k   43 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK   43 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            56899999999999999999999999988899987765

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.11  E-value=0.00064  Score=57.37  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=34.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .+|.++++.|++|+||||.+-.++.++...|..+..+.+
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~   48 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKP   48 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEe
Confidence            468999999999999999999999999888988877653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.11  E-value=0.00062  Score=59.92  Aligned_cols=28  Identities=18%  Similarity=0.253  Sum_probs=26.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+|.+|+|.|++||||||+++.|...+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5789999999999999999999999886

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.09  E-value=0.00079  Score=62.34  Aligned_cols=39  Identities=23%  Similarity=0.334  Sum_probs=34.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .++.+|+|.|++||||||++..|+..+...|.+|..+..
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~  133 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA  133 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence            368899999999999999999999999988999876553

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.08  E-value=0.00026  Score=63.10  Aligned_cols=26  Identities=27%  Similarity=0.273  Sum_probs=24.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +++|+|.||+||||||++..|+++++
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999999885

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.07  E-value=0.00032  Score=57.83  Aligned_cols=29  Identities=28%  Similarity=0.383  Sum_probs=25.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|++||||||+++.|...+.
T Consensus        17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            46799999999999999999999988774

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.05  E-value=0.00044  Score=61.24  Aligned_cols=30  Identities=17%  Similarity=0.193  Sum_probs=27.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..+|.+|+|.|++||||||+++.|...+..
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            467899999999999999999999998874

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.05  E-value=0.00043  Score=61.61  Aligned_cols=30  Identities=17%  Similarity=0.190  Sum_probs=26.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..++.+|.|.|++||||||+++.|...+..
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~  118 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSR  118 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            346779999999999999999999998863

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.04  E-value=0.001  Score=55.76  Aligned_cols=39  Identities=15%  Similarity=0.120  Sum_probs=35.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .+|.+.++.|+.||||||.+-.++.++...|..+..+.+
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~   64 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP   64 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence            568999999999999999999999999989999887763

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.03  E-value=0.00044  Score=56.13  Aligned_cols=25  Identities=20%  Similarity=0.393  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +.++|.|++||||||+++.|...+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999999885

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.03  E-value=0.00069  Score=59.79  Aligned_cols=38  Identities=29%  Similarity=0.566  Sum_probs=32.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+|.+|+|.|+.||||||+++.|+..+...+-++....
T Consensus       100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g  137 (304)
T 1rj9_A          100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA  137 (304)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence            36889999999999999999999999987666666543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.03  E-value=0.00084  Score=54.69  Aligned_cols=35  Identities=20%  Similarity=0.029  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .-|.|.|++|+||||++..++..+...|.++..+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~   89 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY   89 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            67889999999999999999999987777776554

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.01  E-value=0.0003  Score=62.53  Aligned_cols=27  Identities=30%  Similarity=0.364  Sum_probs=24.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ++++|+|.||+||||||++..|++.++
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCc
Confidence            567999999999999999999999885

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.00  E-value=0.00037  Score=62.49  Aligned_cols=25  Identities=24%  Similarity=0.321  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ++|+|.||+||||||++..|++.++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            6999999999999999999999986

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.99  E-value=0.00083  Score=55.34  Aligned_cols=39  Identities=18%  Similarity=0.128  Sum_probs=31.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .+|.+++|.|++||||||++..|+..+...+..+..+..
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~   59 (235)
T 2w0m_A           21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT   59 (235)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence            478899999999999999999999777555556665543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.98  E-value=0.0014  Score=57.73  Aligned_cols=39  Identities=23%  Similarity=0.331  Sum_probs=32.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+|.+|+|.|+.||||||+++.|+..+...+-++....
T Consensus        97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g  135 (302)
T 3b9q_A           97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA  135 (302)
T ss_dssp             SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            357899999999999999999999999987666666543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.98  E-value=0.00093  Score=57.59  Aligned_cols=30  Identities=17%  Similarity=0.480  Sum_probs=27.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..+|.+++|.||.||||||+.+.|...+..
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~   51 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence            457889999999999999999999998864

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.97  E-value=0.00052  Score=54.71  Aligned_cols=29  Identities=24%  Similarity=0.303  Sum_probs=26.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+++.|...+.
T Consensus        30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~   58 (158)
T 1htw_A           30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence            36889999999999999999999999884

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.96  E-value=0.0011  Score=52.37  Aligned_cols=28  Identities=25%  Similarity=0.154  Sum_probs=24.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+..++|.|++|+||||+++.+++.+..
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            4566889999999999999999999865

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.90  E-value=0.0012  Score=58.64  Aligned_cols=39  Identities=26%  Similarity=0.410  Sum_probs=34.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .+|.+|+|.|+.|+||||++..|+..+...|.+|.....
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~  141 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA  141 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            578899999999999999999999999888888876653

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=96.90  E-value=0.00085  Score=62.68  Aligned_cols=144  Identities=11%  Similarity=0.014  Sum_probs=73.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      +.++++|+|.||.|+|   ++++|.+.+...... ..++ |..+..-|.   ++     .+.              -...
T Consensus       221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s-~~TR-pR~gE~dG~---~Y-----~FT--------------s~~~  273 (468)
T 3shw_A          221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQI-AKSE-PRDAGTDQR---SS-----GII--------------RLHT  273 (468)
T ss_dssp             CSSCCCEEEESTTHHH---HHHHHHHHCTTTEEE-CCCB-C------------------CBC--------------CHHH
T ss_pred             CCCCCEEEEECCCHHH---HHHHHHHhCCCceee-ecCC-CCCcccccc---cC-----Ccc--------------cHHH
Confidence            4578999999999999   888887766543221 1234 431111110   11     010              1234


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHh----hcCCCCCCcchH-HHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAE----RGGYGGERYEHL-EFQR  206 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~----R~~~R~d~~e~~-~~~~  206 (259)
                      |+..+++|.+||+|=-+              +-+.++....+.| ++||+..|--..++    |+..  +.-+.. ..++
T Consensus       274 V~~vl~~Gk~~iLdId~--------------qg~~~l~~~~~~p-~~IFI~PPS~e~L~~~~~rl~~--~see~~~r~~~  336 (468)
T 3shw_A          274 IKQIIDQDKHALLDVTP--------------NAVDRLNYAQWYP-IVVFLNPDSKQGVKTMRMRLCP--ESRKSARKLYE  336 (468)
T ss_dssp             HHHHHTTTCEEEECCCH--------------HHHHHHHHTTCCC-EEEEEECSCHHHHHHHHHHHCT--TCCCCHHHHHH
T ss_pred             HHHHHHCCCeEEEEeCH--------------HHHHHHHhcCCCC-EEEEEeCcCHHHHHHHHhccCC--CCHHHHHHHHH
Confidence            66778899999998322              2233344445567 67777765444433    4331  211211 1111


Q ss_pred             ---HHHHHHHhhhCCCeEEEcCCCCH-HHHHHHHHHHHHHH
Q 025041          207 ---KVAQCYQMLRDSSWKIIDACQSI-EDVEKQLKEIVLDQ  243 (259)
Q Consensus       207 ---rv~~~y~~l~~~~~~vIDa~~s~-eev~~~I~~~i~~~  243 (259)
                         ++...|..  ...+++||.+  . ++.++++.++|...
T Consensus       337 ~a~~~e~~~~~--~fD~vIvNdd--l~d~a~~~L~~ii~~~  373 (468)
T 3shw_A          337 RSHKLRKNNHH--LFTTTINLNS--MNDGWYGALKEAIQQQ  373 (468)
T ss_dssp             HHHHHHHHHGG--GCSEEEECBT--TBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhc--cCCEEEECCC--cHHHHHHHHHHHHHHh
Confidence               11222222  2467777543  5 47777777776543

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.86  E-value=0.00053  Score=60.80  Aligned_cols=27  Identities=26%  Similarity=0.239  Sum_probs=24.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+++|+|.||+||||||++..|++.++
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence            467999999999999999999999885

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.86  E-value=0.00046  Score=55.76  Aligned_cols=31  Identities=26%  Similarity=0.440  Sum_probs=27.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV   86 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v   86 (259)
                      .+|+|.|++||||||+++.|...+...|+.+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~   33 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRV   33 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCce
Confidence            4799999999999999999999998876654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.81  E-value=0.00084  Score=55.05  Aligned_cols=29  Identities=28%  Similarity=0.318  Sum_probs=25.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCC
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLG   83 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g   83 (259)
                      |.+|+|.|+.||||||+++.|+..+...|
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G   29 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcccCC
Confidence            45789999999999999999999887556

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.80  E-value=0.0016  Score=54.24  Aligned_cols=38  Identities=21%  Similarity=0.128  Sum_probs=31.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+|.++.|.|++||||||++..++..+...|..+.++.
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~   58 (247)
T 2dr3_A           21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA   58 (247)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            47889999999999999999988877655676777655

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.78  E-value=0.0016  Score=58.37  Aligned_cols=38  Identities=24%  Similarity=0.260  Sum_probs=32.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+...|+|.|.+|+||||++..|+..+...|.++..+.
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~  114 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA  114 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence            45678999999999999999999999987888876543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.77  E-value=0.0014  Score=59.18  Aligned_cols=39  Identities=23%  Similarity=0.331  Sum_probs=32.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+|.+|+|.|+.||||||++..|+..+...+-++....
T Consensus       154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g  192 (359)
T 2og2_A          154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA  192 (359)
T ss_dssp             SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence            357899999999999999999999999987666666543

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.77  E-value=0.0018  Score=56.21  Aligned_cols=39  Identities=15%  Similarity=0.153  Sum_probs=32.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~   90 (259)
                      ..+|-+++|.|++|+||||++..|+..+... |..+..+.
T Consensus        32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~   71 (296)
T 1cr0_A           32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM   71 (296)
T ss_dssp             BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            4689999999999999999999999988654 76666554

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.77  E-value=0.0014  Score=51.86  Aligned_cols=28  Identities=21%  Similarity=0.101  Sum_probs=24.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+..|+|.|++|+||||+++.+++.+..
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3556789999999999999999999865

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=96.76  E-value=0.0032  Score=57.43  Aligned_cols=145  Identities=10%  Similarity=-0.007  Sum_probs=74.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      +..+++|+|.||+|   +|+++.|.+.+.....  ..++.|..+..          ++.+..       | .    ....
T Consensus       229 ~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~--~~tr~pR~gE~----------dG~~Y~-------F-v----~~~~  281 (391)
T 3tsz_A          229 AGFLRPVTIFGPIA---DVAREKLAREEPDIYQ--IAKSEPRDAGT----------DQRSSG-------I-I----RLHT  281 (391)
T ss_dssp             CSSCCCEEEESTTH---HHHHHHHHHHCTTTEE--ECCCCCCCSSS----------CCC--C-------C-C----CHHH
T ss_pred             CCCCCEEEEECCCH---HHHHHHHHhhCccccc--cccCCCCCccc----------CCccCC-------c-C----cHHH
Confidence            35789999999998   8999999887654311  22344432110          110000       0 0    1234


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCH-HHHHhhcCCCC-CCcchH-HHH---
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPP-EKAAERGGYGG-ERYEHL-EFQ---  205 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~-e~~~~R~~~R~-d~~e~~-~~~---  205 (259)
                      |+..+++|..||+|=-+              +-+.++....+.| ++||+..|- +++.+|...+. +.-+.. ..+   
T Consensus       282 V~~~~~~Gk~~iLdId~--------------qg~~~l~~~~~~p-~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a  346 (391)
T 3tsz_A          282 IKQIIDQDKHALLDVTP--------------NAVDRLNYAQWYP-IVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERS  346 (391)
T ss_dssp             HHHHHTTTCEEEECCCH--------------HHHHHHHHTTCCC-EEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHH
T ss_pred             HHHHHHcCCEEEEEeCH--------------HHHHHHHhCCCCC-EEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            66778899999998322              2233444445567 677776654 44443311111 221211 111   


Q ss_pred             HHHHHHHHhhhCCCeEEEcCCCCHH-HHHHHHHHHHHH
Q 025041          206 RKVAQCYQMLRDSSWKIIDACQSIE-DVEKQLKEIVLD  242 (259)
Q Consensus       206 ~rv~~~y~~l~~~~~~vIDa~~s~e-ev~~~I~~~i~~  242 (259)
                      .++...|..  ..++++||.+  .+ +.++++.++|..
T Consensus       347 ~~~e~~~~~--~fd~vivNd~--l~~~a~~~l~~ii~~  380 (391)
T 3tsz_A          347 HKLRKNNHH--LFTTTINLNS--MNDGWYGALKEAIQQ  380 (391)
T ss_dssp             HHHHHHHGG--GCSEEEECCT--TCCHHHHHHHHHHHH
T ss_pred             HHHHHhccc--cCcEEEECCC--cHHHHHHHHHHHHHH
Confidence            111122222  2467777654  54 567777776654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.74  E-value=0.0027  Score=53.67  Aligned_cols=38  Identities=26%  Similarity=0.285  Sum_probs=33.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+..++++.|..|+||||++..|+..+. .|.++..+.
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd   48 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN   48 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence            45678999999999999999999999998 898886654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.74  E-value=0.0031  Score=55.37  Aligned_cols=39  Identities=23%  Similarity=0.328  Sum_probs=34.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP   92 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p   92 (259)
                      ++.+|++.|+.|+||||++..|+..+...|.++......
T Consensus        97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D  135 (297)
T 1j8m_F           97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD  135 (297)
T ss_dssp             SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            488999999999999999999999998888888766543

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.73  E-value=0.00046  Score=57.36  Aligned_cols=28  Identities=21%  Similarity=0.215  Sum_probs=24.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..|+.|+|.|++|+||||++..|+++..
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            4678899999999999999999988653

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.73  E-value=0.0016  Score=56.84  Aligned_cols=35  Identities=14%  Similarity=0.139  Sum_probs=27.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+..|.|.||+|+|||++++.+++.++   .+++.+.
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l~---~~~i~v~   68 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKMG---INPIMMS   68 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHHT---CCCEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEe
Confidence            3456788889999999999999999994   4444443

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.72  E-value=0.0016  Score=61.30  Aligned_cols=38  Identities=26%  Similarity=0.385  Sum_probs=32.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      ..+|.+|+|.|+.||||||+++.|+..+...+-.+.+.
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~  327 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA  327 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence            35789999999999999999999999998766666554

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.70  E-value=0.0021  Score=57.70  Aligned_cols=37  Identities=22%  Similarity=0.212  Sum_probs=30.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      ..+.+|+|.|++||||||+.+.|...+...+.++...
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~  108 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVL  108 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEE
Confidence            3478999999999999999999999887766665443

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.69  E-value=0.0018  Score=53.09  Aligned_cols=37  Identities=22%  Similarity=0.078  Sum_probs=30.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      ..+|.+++|.|++||||||++..++.   ..|..+.++..
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~   53 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT   53 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence            35789999999999999999999988   33556666553

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.67  E-value=0.0012  Score=58.26  Aligned_cols=29  Identities=21%  Similarity=0.377  Sum_probs=26.8

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ...+|.+++|.|++||||||+++.|...+
T Consensus       122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            35689999999999999999999999988

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.66  E-value=0.0019  Score=56.73  Aligned_cols=37  Identities=16%  Similarity=-0.052  Sum_probs=30.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+.-+.|.|++|+||||+++.++..+...+..+..+.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~   72 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS   72 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            4567889999999999999999999976667776654

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.66  E-value=0.0021  Score=57.97  Aligned_cols=35  Identities=26%  Similarity=0.426  Sum_probs=28.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEE
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVEL   88 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~   88 (259)
                      ++-+|+|.||.||||||+.+.|...+... +-.+..
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t  157 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT  157 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE
Confidence            45599999999999999999999988753 444443

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.64  E-value=0.0011  Score=54.61  Aligned_cols=28  Identities=21%  Similarity=0.177  Sum_probs=25.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+|-+++|.|++||||||+++.|+-.+.
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5789999999999999999999987553

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.63  E-value=0.0011  Score=56.05  Aligned_cols=29  Identities=17%  Similarity=0.196  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            46899999999999999999999976553

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.63  E-value=0.0012  Score=60.49  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=24.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .++|+|.||+||||||++..|++.++.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~   28 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNG   28 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCC
Confidence            368999999999999999999999964

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.61  E-value=0.0026  Score=56.79  Aligned_cols=37  Identities=30%  Similarity=0.421  Sum_probs=30.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL   88 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~   88 (259)
                      ..+|.+|+|.|++||||||+.+.|...+...+-++..
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i   88 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAV   88 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEE
Confidence            4678999999999999999999999988765555543

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.61  E-value=0.0014  Score=59.56  Aligned_cols=29  Identities=21%  Similarity=0.225  Sum_probs=26.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+|+|.||+||||||+++.|+..+.
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~  194 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELCG  194 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            45788999999999999999999998764

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.61  E-value=0.0022  Score=60.42  Aligned_cols=38  Identities=29%  Similarity=0.522  Sum_probs=32.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++..|+|.|++|+||||++..|+..+...|.++..+.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd  136 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC  136 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence            35678999999999999999999999988888876654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.59  E-value=0.0024  Score=57.83  Aligned_cols=31  Identities=16%  Similarity=0.450  Sum_probs=27.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      ..+|.+|+|.|++||||||+.+.|...+...
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~  163 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT  163 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence            3578899999999999999999999988753

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.59  E-value=0.0029  Score=54.82  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=27.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCC
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGH   84 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~   84 (259)
                      ..+.-|.|.|++|+||||+++.+++.+...++
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~   96 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGY   96 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence            34556899999999999999999999976544

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.58  E-value=0.0032  Score=53.22  Aligned_cols=38  Identities=26%  Similarity=0.139  Sum_probs=32.2

Q ss_pred             CCccE-EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGAL-VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~l-IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+|++ |++.|++|+||||++-.++..+...|++|....
T Consensus         3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d   41 (228)
T 2r8r_A            3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV   41 (228)
T ss_dssp             CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence            35655 888999999999999999999988999886543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.56  E-value=0.0026  Score=58.62  Aligned_cols=40  Identities=15%  Similarity=0.173  Sum_probs=31.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP   92 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p   92 (259)
                      .+|-+|+|.|+.||||||+.+.|...+....-.+.....|
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~  204 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP  204 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence            4677999999999999999999999886543345544443

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.56  E-value=0.0029  Score=55.36  Aligned_cols=38  Identities=32%  Similarity=0.403  Sum_probs=33.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      +|.+|+|.|+.|+||||++..|+..+...|.++.....
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~  134 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA  134 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence            78899999999999999999999999887888776553

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.55  E-value=0.0029  Score=58.53  Aligned_cols=39  Identities=26%  Similarity=0.353  Sum_probs=34.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~~   91 (259)
                      .++.+|+|.|+.|+||||++..|+..|... |.+|..+..
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~  137 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA  137 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            356789999999999999999999999988 999877653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.52  E-value=0.0012  Score=55.49  Aligned_cols=29  Identities=21%  Similarity=0.173  Sum_probs=24.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           27 VKKGEFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             EETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35788999999999999999999976553

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.52  E-value=0.0031  Score=56.25  Aligned_cols=38  Identities=16%  Similarity=0.068  Sum_probs=32.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      ..++.+|+|.|++|+||||+++.|...+...|..+..+
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~   90 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI   90 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence            35789999999999999999999999987777766544

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.51  E-value=0.0033  Score=55.33  Aligned_cols=37  Identities=24%  Similarity=0.162  Sum_probs=32.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHh-hCCCeEEEEec
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLE-GLGHSVELWRF   91 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~-~~g~~v~~~~~   91 (259)
                      +.-|.|.|++|+|||+++..++..+. ..|+++..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~  189 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF  189 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence            56788999999999999999999998 88888876553

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.51  E-value=0.0015  Score=55.33  Aligned_cols=29  Identities=41%  Similarity=0.574  Sum_probs=25.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+.+.|.-.+.
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           28 IPEGALVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45889999999999999999999977654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.50  E-value=0.0012  Score=61.06  Aligned_cols=37  Identities=24%  Similarity=0.486  Sum_probs=32.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++.+|+|.|++|+||||++..|+..+...|++|..+.
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~  134 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA  134 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            4578999999999999999999999987788887654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.45  E-value=0.0015  Score=55.50  Aligned_cols=29  Identities=17%  Similarity=0.326  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45899999999999999999999987654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.44  E-value=0.0018  Score=56.09  Aligned_cols=27  Identities=30%  Similarity=0.423  Sum_probs=23.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|  |.|.||+|+||||+++.|+..++
T Consensus        43 ~~~G--vlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           43 TPAG--VLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             CCSE--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred             CCCe--EEEECCCCCcHHHHHHHHHHHcC
Confidence            3456  89999999999999999998774

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.44  E-value=0.0015  Score=56.20  Aligned_cols=29  Identities=14%  Similarity=0.174  Sum_probs=25.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           29 ARAGDVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45899999999999999999999976554

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.43  E-value=0.0015  Score=55.04  Aligned_cols=29  Identities=34%  Similarity=0.443  Sum_probs=25.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+.+.|.-.+.
T Consensus        31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           31 IERGQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            35889999999999999999999987664

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.43  E-value=0.0037  Score=56.36  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=33.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .+|.++.|.|++|+||||++..++..+...|..+.++..
T Consensus        59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~   97 (356)
T 3hr8_A           59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA   97 (356)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence            478999999999999999999999988777777766543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.42  E-value=0.0082  Score=53.30  Aligned_cols=35  Identities=17%  Similarity=0.057  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEec
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWRF   91 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~~   91 (259)
                      .++|.|++|+||||+++.+...+... +..++.++-
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~   81 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING   81 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence            89999999999999999999999766 566666653

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.42  E-value=0.0019  Score=55.22  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=24.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           26 VPKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            358899999999999999999999764

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=96.42  E-value=0.0015  Score=55.74  Aligned_cols=68  Identities=12%  Similarity=0.052  Sum_probs=41.0

Q ss_pred             CCCCEEEEEeCCHHHHHhhcCCCCCC---cchHHHHHHHHHH-HHh-hh-CCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          173 LAPDSVLYLDIPPEKAAERGGYGGER---YEHLEFQRKVAQC-YQM-LR-DSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       173 ~~PdlvI~Ld~~~e~~~~R~~~R~d~---~e~~~~~~rv~~~-y~~-l~-~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      ...|.+|..+++.+.-.+|+..|+..   ...... .++..+ -.+ +. ...-.+||+++++++..++|.+++.
T Consensus       166 ~~~d~VvVvdv~~~~qieRl~~rg~~~v~i~~~~~-~~i~~Q~se~~~k~~~AD~VI~N~gsle~l~~qV~~ll~  239 (241)
T 1dek_A          166 SGYDYYIVPDTRQDHEMDAARAMGATVIHVVRPGQ-KSNDTHITEAGLPIRDGDLVITNDGSLEELFSKIKNTLK  239 (241)
T ss_dssp             SSCSEEEECCCCSHHHHHHHHHTTCEEEEEECTTC-CCSCCSGGGSCCCCCTTCEEEECCSCHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEcCCcHHHHHHHHHCCCceEEEECccc-chhhcCCCcccccccCCCEEEECCCCHHHHHHHHHHHHh
Confidence            34689999999999999998766321   000000 011000 001 00 0123688888999999999988764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.41  E-value=0.0023  Score=52.24  Aligned_cols=28  Identities=25%  Similarity=0.159  Sum_probs=24.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      +..++|.|++|+||||+++.+++.+...
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~   72 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLNCE   72 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            3588999999999999999999988653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.41  E-value=0.0029  Score=55.99  Aligned_cols=38  Identities=21%  Similarity=0.176  Sum_probs=30.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC---CCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL---GHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~---g~~v~~~~   90 (259)
                      ..+..++|.|++|+||||+++.+++.+...   +..++.+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~   83 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN   83 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            457789999999999999999999988654   55665554

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.41  E-value=0.0052  Score=54.40  Aligned_cols=40  Identities=23%  Similarity=0.128  Sum_probs=31.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC------CCeEEEEecC
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL------GHSVELWRFP   92 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~------g~~v~~~~~p   92 (259)
                      ..+..+.|.|++|+||||+++.+.+.+...      +..++.++-+
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~   87 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR   87 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence            456789999999999999999999988543      5555555543

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.40  E-value=0.002  Score=49.93  Aligned_cols=34  Identities=15%  Similarity=0.095  Sum_probs=26.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE   87 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~   87 (259)
                      .+.-|.|.|++|+|||++|+.+.+.....+.+++
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v   56 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV   56 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence            3445789999999999999999887655455555

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.40  E-value=0.002  Score=55.60  Aligned_cols=27  Identities=19%  Similarity=0.279  Sum_probs=24.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.
T Consensus        43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           43 VHPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            458899999999999999999999775

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.40  E-value=0.0018  Score=55.21  Aligned_cols=29  Identities=14%  Similarity=0.265  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35889999999999999999999977654

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.39  E-value=0.0063  Score=56.11  Aligned_cols=38  Identities=32%  Similarity=0.403  Sum_probs=33.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      ++.+|+|.|+.|+||||++..|+..+...|.+|.....
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~  134 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA  134 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence            67899999999999999999999999888888876653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.39  E-value=0.0018  Score=56.26  Aligned_cols=29  Identities=21%  Similarity=0.320  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           31 IKRGEVTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            35899999999999999999999976553

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.39  E-value=0.0017  Score=55.76  Aligned_cols=29  Identities=21%  Similarity=0.303  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           38 IEEGEIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45889999999999999999999976553

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.38  E-value=0.002  Score=55.40  Aligned_cols=29  Identities=21%  Similarity=0.337  Sum_probs=25.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+.+.|.-.+.
T Consensus        43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           43 IPSGTTCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            46899999999999999999999976553

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.38  E-value=0.0021  Score=54.37  Aligned_cols=26  Identities=27%  Similarity=0.351  Sum_probs=23.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+|  |.|.|++|+||||+++.++..+.
T Consensus        49 ~~g--~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           49 PKG--VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             CSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence            455  88999999999999999998775

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.37  E-value=0.002  Score=55.77  Aligned_cols=29  Identities=21%  Similarity=0.285  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           42 LYPGKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            46899999999999999999999977654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.37  E-value=0.0018  Score=55.94  Aligned_cols=29  Identities=24%  Similarity=0.228  Sum_probs=25.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           47 IREGEVVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence            45889999999999999999999976554

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.37  E-value=0.0017  Score=55.08  Aligned_cols=29  Identities=31%  Similarity=0.476  Sum_probs=25.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           29 VPRGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35789999999999999999999976553

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.36  E-value=0.0017  Score=56.09  Aligned_cols=29  Identities=28%  Similarity=0.444  Sum_probs=25.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           34 IASGEMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             EETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            35889999999999999999999987654

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.35  E-value=0.0015  Score=54.59  Aligned_cols=28  Identities=29%  Similarity=0.534  Sum_probs=24.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           33 EKGNVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4788999999999999999999976553

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.35  E-value=0.0037  Score=54.07  Aligned_cols=35  Identities=17%  Similarity=0.100  Sum_probs=28.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+.|.|++|+||||+++.|++.+...+.+++.+.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~   82 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID   82 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence            46899999999999999999999976555555544

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.34  E-value=0.0018  Score=55.52  Aligned_cols=29  Identities=17%  Similarity=0.432  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           30 VNKGDVTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35889999999999999999999976553

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.32  E-value=0.003  Score=53.20  Aligned_cols=34  Identities=18%  Similarity=0.102  Sum_probs=26.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+.-|.|.|++|+||||+++.+++.++   .+++.+.
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~---~~~~~~~   71 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQ---VPFLAMA   71 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHT---CCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEec
Confidence            345578999999999999999999884   3444444

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.31  E-value=0.0033  Score=60.65  Aligned_cols=29  Identities=21%  Similarity=0.253  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus       100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          100 PRPGQVLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            46899999999999999999999987553

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.31  E-value=0.0015  Score=54.33  Aligned_cols=26  Identities=19%  Similarity=0.064  Sum_probs=23.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      .+|-+++|.|+.||||||+.+.|.-.
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            46889999999999999999999876

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.29  E-value=0.0043  Score=55.20  Aligned_cols=38  Identities=16%  Similarity=0.106  Sum_probs=30.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC--------CCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL--------GHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~--------g~~v~~~~   90 (259)
                      ..+..+.|.|++|+||||+++.+++.+...        +..++.++
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~   88 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN   88 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence            346689999999999999999999988543        56666554

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.29  E-value=0.0021  Score=55.40  Aligned_cols=29  Identities=17%  Similarity=0.296  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           30 INEGECLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            45889999999999999999999976553

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.28  E-value=0.0025  Score=53.98  Aligned_cols=24  Identities=21%  Similarity=0.165  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -|.|.|++|+||||+++.|+..++
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECcCCCCHHHHHHHHHHHcC
Confidence            388999999999999999999874

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.26  E-value=0.0027  Score=51.29  Aligned_cols=27  Identities=26%  Similarity=0.268  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCC
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLG   83 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g   83 (259)
                      .+.|.|++|+||||+++.+++.+...+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~   66 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDLFGEN   66 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhccc
Confidence            389999999999999999999886543

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=96.26  E-value=0.027  Score=49.62  Aligned_cols=139  Identities=12%  Similarity=0.014  Sum_probs=71.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      +...+-|||.||   ||+|+.++|.+.+... |++     .|.     ...|    .++ .+-              -..
T Consensus       142 ~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~-----v~~-----~r~i----~~~-~fi--------------s~~  189 (308)
T 3kfv_A          142 ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIA-----ETV-----SRTD----SPS-KII--------------KLD  189 (308)
T ss_dssp             CSSCCCEEEEST---THHHHHHHHHHHCTTTEEEC-----CCC------------------CC--------------CHH
T ss_pred             cCCCCeEEEeCc---cHHHHHHHHHHhCccccccc-----ccc-----cccc----cCC-Cee--------------cHH
Confidence            344566889999   7999999998877543 111     111     0001    111 111              123


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCC-HHHHHhhcCCCC-CCcchHHHHHHH
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIP-PEKAAERGGYGG-ERYEHLEFQRKV  208 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~-~e~~~~R~~~R~-d~~e~~~~~~rv  208 (259)
                      .|+..+++|.+||+|=-+              +-+.++....+.| ++||+..| .+++.+|...+. +.-|.   .+++
T Consensus       190 ~V~~vl~~Gk~~ILDId~--------------QGa~~lk~~~~~p-i~IFI~PPS~eeL~~rr~R~~~esee~---~~r~  251 (308)
T 3kfv_A          190 TVRVIAEKDKHALLDVTP--------------SAIERLNYVQYYP-IVVFFIPESRPALKALRQWLAPASRRS---TRRL  251 (308)
T ss_dssp             HHHHHHHTTCEEEECCCH--------------HHHHHHHHTTCCC-EEEEEEESCHHHHHHHHHHHSTTCCCC---HHHH
T ss_pred             HHHHHHHCCCcEEEEECH--------------HHHHHHHhcCCCC-EEEEEeCCCHHHHHHHHhcCCCCCHHH---HHHH
Confidence            456778899999998322              2233343444567 56666654 444544422111 22121   1222


Q ss_pred             HHHHHh----hh-CCCeEE-EcCCCCHHHHHHHHHHHHHH
Q 025041          209 AQCYQM----LR-DSSWKI-IDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       209 ~~~y~~----l~-~~~~~v-IDa~~s~eev~~~I~~~i~~  242 (259)
                      .++-.+    .. ..++++ ||.  ++|+.++++.++|..
T Consensus       252 ~~aa~eiE~~~~~~FD~vI~VND--dle~A~~~L~~iI~~  289 (308)
T 3kfv_A          252 YAQAQKLRKHSSHLFTATIPLNG--TSDTWYQELKAIIRE  289 (308)
T ss_dssp             HHHHHHHHHHHGGGCSEEEEECS--SSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccCcEEEEcCC--CHHHHHHHHHHHHHH
Confidence            222111    11 145666 654  477888888887765

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.26  E-value=0.0021  Score=54.95  Aligned_cols=29  Identities=21%  Similarity=0.344  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           23 VRAGEILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            35888999999999999999999977654

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=96.23  E-value=0.0059  Score=51.24  Aligned_cols=39  Identities=18%  Similarity=0.111  Sum_probs=30.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .+|.+.+|+|+.||||||.+-.+..++...|..+..+.+
T Consensus        26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp   64 (219)
T 3e2i_A           26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKP   64 (219)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence            458999999999999999555556777777888766543

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.22  E-value=0.0056  Score=54.90  Aligned_cols=38  Identities=18%  Similarity=0.316  Sum_probs=32.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+|.++.|.|++|+||||++..++......|..+.++.
T Consensus        59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~   96 (349)
T 2zr9_A           59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID   96 (349)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            47899999999999999999999987766676766554

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.22  E-value=0.0058  Score=55.03  Aligned_cols=38  Identities=18%  Similarity=0.316  Sum_probs=32.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+|.++.|.|++|+||||+|..++......|..+.++.
T Consensus        61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid   98 (356)
T 1u94_A           61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID   98 (356)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            47899999999999999999999988877777777655

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.21  E-value=0.0029  Score=52.62  Aligned_cols=26  Identities=31%  Similarity=0.419  Sum_probs=24.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      .+|.++.|.|++||||||++..|+..
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            47899999999999999999999885

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.21  E-value=0.003  Score=55.15  Aligned_cols=28  Identities=21%  Similarity=0.280  Sum_probs=24.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+.-|.|.|++|+||||+++.|+..++
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            4567788999999999999999999874

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.21  E-value=0.0023  Score=54.83  Aligned_cols=29  Identities=24%  Similarity=0.478  Sum_probs=25.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           28 LNKGDILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             EETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35788999999999999999999987654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.20  E-value=0.0023  Score=55.62  Aligned_cols=29  Identities=31%  Similarity=0.393  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus        44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           44 IAKGDKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            35889999999999999999999977654

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=96.19  E-value=0.0043  Score=51.25  Aligned_cols=37  Identities=16%  Similarity=0.206  Sum_probs=26.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh-----hCC-CeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE-----GLG-HSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~-----~~g-~~v~~~~   90 (259)
                      .++++.|+|++|||||+.|..+...+.     ..| ..+...+
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~   46 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTN   46 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEEC
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEec
Confidence            356999999999999999988655442     446 5554444

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.17  E-value=0.0032  Score=53.92  Aligned_cols=27  Identities=19%  Similarity=0.108  Sum_probs=23.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+.-|.|.|++|+||||+++.++..++
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            455688899999999999999999874

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.16  E-value=0.003  Score=56.98  Aligned_cols=29  Identities=24%  Similarity=0.448  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.||+||||||+.+.|+-.+.
T Consensus        27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           27 LDPGEILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            35889999999999999999999987654

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.15  E-value=0.0031  Score=54.38  Aligned_cols=34  Identities=15%  Similarity=-0.010  Sum_probs=26.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+.-|.|.|++|+||||+++.++..+.   ..+..+.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~---~~~~~i~   86 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECS---ATFLNIS   86 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTT---CEEEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhC---CCeEEee
Confidence            456788999999999999999999874   3444443

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.12  E-value=0.0033  Score=55.76  Aligned_cols=25  Identities=32%  Similarity=0.335  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+.|.||+|+||||+++.++..++
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhC
Confidence            5689999999999999999999885

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.11  E-value=0.0065  Score=58.15  Aligned_cols=37  Identities=32%  Similarity=0.373  Sum_probs=32.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+.+++|.|++|+||||++..|...+...|..+....
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A  239 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA  239 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence            4678999999999999999999999988888887654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.10  E-value=0.0033  Score=55.01  Aligned_cols=29  Identities=34%  Similarity=0.443  Sum_probs=25.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+.+.|.-.+.
T Consensus        61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           61 IERGQLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            35889999999999999999999977653

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.09  E-value=0.0035  Score=53.85  Aligned_cols=23  Identities=26%  Similarity=0.257  Sum_probs=21.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHh
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~   80 (259)
                      |.|.|++|+||||+++.|+..+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCcChHHHHHHHHHHHcC
Confidence            88999999999999999998775

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.07  E-value=0.0042  Score=55.96  Aligned_cols=26  Identities=23%  Similarity=0.347  Sum_probs=23.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +.|+|.|++|+||||+++.|++.++.
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~~   50 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIINE   50 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            45999999999999999999998864

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=96.06  E-value=0.067  Score=47.61  Aligned_cols=101  Identities=13%  Similarity=0.094  Sum_probs=58.1

Q ss_pred             HHHHHHHhcCCeEEEcccccchhhhh-cCCCCCHHHHHhhhccCCCCCEEEEEeC-CHHHHHhhcCCCCCCcchHHHHHH
Q 025041          130 SMMEAKLKAGTTLIVDRYSYSGVAFS-SAKGIDIEWCKAPEIGLLAPDSVLYLDI-PPEKAAERGGYGGERYEHLEFQRK  207 (259)
Q Consensus       130 ~~i~~~l~~g~~VI~DR~~~s~~ay~-~~~gl~~~~~~~~~~~~~~PdlvI~Ld~-~~e~~~~R~~~R~d~~e~~~~~~r  207 (259)
                      +.+....++|..||+|=-      .+ ++        .++....+.| ++||+.. +.+++.+|+..|+...+ .....+
T Consensus       220 e~i~~v~~~Gk~vILDID------vQnGa--------~qlk~~~~~~-i~IFI~PPS~eeLe~RL~~RGt~~~-~rl~~a  283 (337)
T 4dey_A          220 ERIFELARTLQLVVLDAD------TINHP--------AQLSKTSLAP-IVVYVKISSPKVLQRLIKSRGKSQA-KHLNVQ  283 (337)
T ss_dssp             HHHHHHTTTCCEEEEEET------TCCSG--------GGTTTSSCCC-EEEEECCSCHHHHHHHHHTTCHHHH-TTHHHH
T ss_pred             HHHHHHHhCCCEEEEEeC------cHHHH--------HHHHhcCCCC-EEEEEECcCHHHHHHHHHhCCchHH-HHHHHH
Confidence            344555568999999832      22 21        2223344455 4445544 47788889887754211 011111


Q ss_pred             HHHHHHhh----hCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhh
Q 025041          208 VAQCYQML----RDSSWKIIDACQSIEDVEKQLKEIVLDQVTACK  248 (259)
Q Consensus       208 v~~~y~~l----~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~  248 (259)
                      +..+-.++    ...++++||.  ++|+.++++.++|..++..-|
T Consensus       284 l~~ae~E~~~~~~~FDyvIVND--dLe~A~~~L~~iI~~~~~~~h  326 (337)
T 4dey_A          284 MVAADKLAQCPPELFDVILDEN--QLEDACEHLADYLEAYWKATH  326 (337)
T ss_dssp             HHHHHHHHHSCGGGCSEEECCS--SHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhCcccCCEEEECC--CHHHHHHHHHHHHHHHHhccC
Confidence            11111112    1246777764  599999999999999888776

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.06  E-value=0.0037  Score=56.38  Aligned_cols=29  Identities=31%  Similarity=0.434  Sum_probs=25.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.||+||||||+.+.|+--+.
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           26 VKDGEFVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence            35889999999999999999999987654

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.0049  Score=54.72  Aligned_cols=29  Identities=17%  Similarity=0.172  Sum_probs=26.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+|..|.|.|+||+|||++++.+.+.+..
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~   71 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDELIT   71 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            47788999999999999999999999964

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.04  E-value=0.0038  Score=56.81  Aligned_cols=29  Identities=24%  Similarity=0.393  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.||+||||||+.+.|+--+.
T Consensus        26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           26 IHEGEFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence            35889999999999999999999987654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.03  E-value=0.0081  Score=49.20  Aligned_cols=33  Identities=18%  Similarity=0.121  Sum_probs=26.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE   87 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~   87 (259)
                      +.+.|+|.|.+|+||||+++.|...+... +.+.
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~   61 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIG   61 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEE
Confidence            45689999999999999999999987544 4443

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.03  E-value=0.0028  Score=57.05  Aligned_cols=29  Identities=21%  Similarity=0.252  Sum_probs=25.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+|.+|+|.|+.||||||+++.|...+..
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            46889999999999999999999987764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.02  E-value=0.0051  Score=52.26  Aligned_cols=36  Identities=19%  Similarity=0.070  Sum_probs=28.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +.-|.|.|++|+|||++++.+++.+...+.+++.++
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~   64 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN   64 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence            455788999999999999999998765556666554

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.02  E-value=0.004  Score=56.28  Aligned_cols=29  Identities=17%  Similarity=0.249  Sum_probs=25.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.||.||||||+.+.|+-.+.
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           26 IKDGEFMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            35889999999999999999999987654

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.02  E-value=0.0092  Score=52.53  Aligned_cols=39  Identities=18%  Similarity=0.189  Sum_probs=33.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+|-+++|.|.+|+||||++..++...-..|.++.++.
T Consensus        65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s  103 (315)
T 3bh0_A           65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS  103 (315)
T ss_dssp             BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            357899999999999999999999988766676776654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.01  E-value=0.0042  Score=52.74  Aligned_cols=27  Identities=22%  Similarity=0.270  Sum_probs=23.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+ -+++|.|+.||||||+.+.|+-.+.
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46 7999999999999999999987654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.99  E-value=0.004  Score=56.13  Aligned_cols=29  Identities=24%  Similarity=0.216  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           38 IREGEMVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            35789999999999999999999987553

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.98  E-value=0.0029  Score=51.45  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=22.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..|.=|.|.|++|+||||++-.|.+
T Consensus        14 v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           14 IDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            4677899999999999999999877

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.98  E-value=0.0042  Score=56.34  Aligned_cols=29  Identities=31%  Similarity=0.455  Sum_probs=25.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.||.||||||+.+.|+-.+.
T Consensus        34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            35889999999999999999999987553

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.98  E-value=0.0053  Score=52.39  Aligned_cols=35  Identities=20%  Similarity=0.163  Sum_probs=27.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+.-+.|.|++|+||||+++.+++.++   .+++.+.
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~---~~~~~i~   96 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESN---FPFIKIC   96 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHT---CSEEEEE
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhC---CCEEEEe
Confidence            4566789999999999999999999864   4444444

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.98  E-value=0.0026  Score=56.16  Aligned_cols=29  Identities=21%  Similarity=0.332  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+++.|...+.
T Consensus        77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           77 VMPGQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             ECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            46899999999999999999999977664

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=95.97  E-value=0.0097  Score=50.42  Aligned_cols=39  Identities=18%  Similarity=0.252  Sum_probs=34.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      ..|.+.++.|+.||||||.+-.++.++...|.++..+.+
T Consensus        17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp   55 (234)
T 2orv_A           17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY   55 (234)
T ss_dssp             -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence            468999999999999999999999999888999887663

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.95  E-value=0.0045  Score=56.01  Aligned_cols=29  Identities=14%  Similarity=0.096  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|.--+.
T Consensus        51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           51 VPAGQIYGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence            46899999999999999999999976553

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.91  E-value=0.007  Score=54.06  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=26.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      .+.-|.|.||+|+||||+|+.|++.++   .+++.+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~---~~~~~~   82 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLD---VPFTMA   82 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT---CCEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEe
Confidence            455688899999999999999999884   444443

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.91  E-value=0.0044  Score=51.70  Aligned_cols=27  Identities=15%  Similarity=0.313  Sum_probs=24.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +...|+|.||+|+||||.|..|++.+.
T Consensus        57 kkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           57 KKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345699999999999999999999985

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.91  E-value=0.005  Score=52.99  Aligned_cols=27  Identities=22%  Similarity=0.265  Sum_probs=23.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+.-|.|.|++|+||||+++.+++.++
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            345677899999999999999999984

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.89  E-value=0.0041  Score=53.62  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=24.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      .. |-+++|.|+.||||||+.+.|.-.+
T Consensus        28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           28 VN-GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            46 8899999999999999999997655

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.88  E-value=0.0058  Score=52.52  Aligned_cols=30  Identities=20%  Similarity=0.233  Sum_probs=26.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..+|.++.|.|++||||||++..++..+..
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~   56 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQIAG   56 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            357899999999999999999999886653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.88  E-value=0.0047  Score=55.96  Aligned_cols=28  Identities=29%  Similarity=0.510  Sum_probs=24.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+|-+++|.|++||||||+.+.|+-.+.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence            4788999999999999999999987654

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.88  E-value=0.0046  Score=50.38  Aligned_cols=30  Identities=20%  Similarity=0.342  Sum_probs=24.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +|.|.|+.||||||+|..|+..    |.++.++.
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yia   30 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD----APQVLYIA   30 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS----CSSEEEEE
T ss_pred             CEEEECCCCCcHHHHHHHHHhc----CCCeEEEe
Confidence            4789999999999999999865    44565554

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.86  E-value=0.0055  Score=54.38  Aligned_cols=27  Identities=26%  Similarity=0.327  Sum_probs=24.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +.-+.|.||+|+||||+++.+++.+..
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            568999999999999999999999964

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.84  E-value=0.0044  Score=54.69  Aligned_cols=27  Identities=26%  Similarity=0.298  Sum_probs=23.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      .+-.+++|.|+.||||||+.+.|....
T Consensus         2 ~~i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            2 NPIAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             CCEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CcccEEEEEecCCCCHHHHHHHHHhhc
Confidence            355789999999999999999998754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.83  E-value=0.0052  Score=54.35  Aligned_cols=25  Identities=28%  Similarity=0.286  Sum_probs=22.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      +.|.||+|+||||+++.++..+...
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~~   73 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYGK   73 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCC
Confidence            8999999999999999999998654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.83  E-value=0.0052  Score=56.03  Aligned_cols=29  Identities=34%  Similarity=0.329  Sum_probs=25.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.||+||||||+.+.|+-.+.
T Consensus        44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            45899999999999999999999986543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.83  E-value=0.0035  Score=56.35  Aligned_cols=29  Identities=21%  Similarity=0.213  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.||.||||||+.+.|+-.+.
T Consensus        23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           23 VESGEYFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence            35789999999999999999999986553

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.82  E-value=0.0074  Score=46.79  Aligned_cols=26  Identities=35%  Similarity=0.434  Sum_probs=22.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +.+..-|+|.|.+|+||||+++.|..
T Consensus         4 ~~~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            4 MTREMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhc
Confidence            45667799999999999999999964

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.80  E-value=0.004  Score=55.87  Aligned_cols=26  Identities=19%  Similarity=0.323  Sum_probs=24.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +..++|.|++||||||+++.|+..+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            78899999999999999999998875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.80  E-value=0.0063  Score=48.49  Aligned_cols=26  Identities=23%  Similarity=0.428  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +| +.+|.|+.||||||+.+.|.-.+.
T Consensus        26 ~g-~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           26 KG-FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence            45 899999999999999999987664

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.79  E-value=0.0031  Score=51.16  Aligned_cols=26  Identities=27%  Similarity=0.400  Sum_probs=22.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..+|..|+|.|++||||||+.+.|..
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            35788999999999999999998864

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.73  E-value=0.012  Score=48.81  Aligned_cols=38  Identities=24%  Similarity=0.305  Sum_probs=29.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHH-HhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSY-LEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~-l~~~g~~v~~~~   90 (259)
                      .+|.++.|.|++|+||||+|-.++.. ....|..+.++.
T Consensus        28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s   66 (251)
T 2zts_A           28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT   66 (251)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence            47889999999999999999887654 333455665544

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.72  E-value=0.0064  Score=53.48  Aligned_cols=27  Identities=15%  Similarity=0.124  Sum_probs=23.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+.-|.|.|++|+|||++++.++..++
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~   76 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEAN   76 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence            345688999999999999999999874

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.71  E-value=0.0093  Score=53.44  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=23.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +.-|.|.|++|+||||+++.|++.++
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            44588999999999999999999883

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.71  E-value=0.01  Score=55.83  Aligned_cols=36  Identities=19%  Similarity=0.071  Sum_probs=29.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP   92 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p   92 (259)
                      .+..+.|.||+|+||||+++.+++.+   |+.++.++.+
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s  111 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNAS  111 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCC
Confidence            34689999999999999999999988   5666666544

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.70  E-value=0.013  Score=54.13  Aligned_cols=33  Identities=18%  Similarity=0.038  Sum_probs=26.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++=|.+.||||+|||++|+.++..++   .+++.+.
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~~~---~~~~~v~  238 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANSTK---AAFIRVN  238 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHHHT---CEEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEe
Confidence            34588899999999999999999985   4555444

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.70  E-value=0.013  Score=52.89  Aligned_cols=39  Identities=18%  Similarity=0.287  Sum_probs=32.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .+|.+|.|.|++|+||||++..++......|..+.++..
T Consensus        72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~  110 (366)
T 1xp8_A           72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA  110 (366)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence            478899999999999999999999887666777776653

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.70  E-value=0.0065  Score=53.66  Aligned_cols=35  Identities=11%  Similarity=-0.017  Sum_probs=26.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+.-|.|.||+|+|||++++.++..+.  +..++.+.
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~   78 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSIS   78 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEE
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEE
Confidence            345678889999999999999999873  33444444

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.69  E-value=0.0067  Score=47.99  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      ++..|+|.|.+|+||||+.+.|...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=95.68  E-value=0.0065  Score=53.23  Aligned_cols=26  Identities=35%  Similarity=0.376  Sum_probs=23.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ..|.+++|.|++|+||||+++.|. .+
T Consensus       163 l~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          163 LEGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            467899999999999999999998 44

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.67  E-value=0.017  Score=47.32  Aligned_cols=29  Identities=21%  Similarity=0.140  Sum_probs=24.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      +...|+|.|.+|+||||++..|...+...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~   65 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK   65 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence            45778999999999999999999887543

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.66  E-value=0.0035  Score=56.44  Aligned_cols=29  Identities=17%  Similarity=0.071  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.||.||||||+.+.|+-.+.
T Consensus        28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           28 IENGERFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            35789999999999999999999987553

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.66  E-value=0.0065  Score=54.79  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      +|.+++|.|++|+||||+++.|...+
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccc
Confidence            57899999999999999999997543

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.65  E-value=0.0095  Score=54.97  Aligned_cols=36  Identities=17%  Similarity=0.017  Sum_probs=29.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhC--CCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGL--GHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~--g~~v~~~~   90 (259)
                      +.-+.|.|++|+||||+++.++..+...  +..+..+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~  167 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT  167 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence            5678999999999999999999988654  55665544

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.64  E-value=0.0074  Score=57.29  Aligned_cols=27  Identities=30%  Similarity=0.459  Sum_probs=25.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +|..+.|.||+|+||||+++.|+..+.
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            678999999999999999999999985

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.64  E-value=0.0036  Score=53.16  Aligned_cols=24  Identities=25%  Similarity=0.171  Sum_probs=21.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      |.|.|++|+||||+++.++..+..
T Consensus        47 vll~G~~GtGKT~la~~la~~~~~   70 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAHV   70 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCC
Confidence            678899999999999999998854

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.63  E-value=0.0081  Score=46.97  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ...|+|.|++|+||||+.+.|..
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            35799999999999999999965

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=95.62  E-value=0.0093  Score=49.56  Aligned_cols=34  Identities=15%  Similarity=0.162  Sum_probs=30.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .|+|.|-.|+||||++..|+..|...|++|..++
T Consensus         2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD   35 (254)
T 3kjh_A            2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD   35 (254)
T ss_dssp             EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            4777999999999999999999998899987665

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.61  E-value=0.014  Score=53.89  Aligned_cols=34  Identities=18%  Similarity=0.071  Sum_probs=26.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++=|.+.||||+|||++|+.++..++   .+++.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~~---~~~~~v~  247 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATIG---ANFIFSP  247 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHT---CEEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhC---CCEEEEe
Confidence            345677889999999999999999985   4555444

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.60  E-value=0.0099  Score=47.08  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +...|+|.|.+|+||||+.+.|..
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            557799999999999999999975

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.60  E-value=0.0077  Score=52.88  Aligned_cols=23  Identities=30%  Similarity=0.247  Sum_probs=21.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHh
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +.|.|++|+||||+++.+++.+.
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999999875

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.59  E-value=0.015  Score=53.79  Aligned_cols=34  Identities=12%  Similarity=-0.034  Sum_probs=27.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++=|.+.||||+|||++|+.++..++   .++..+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~~---~~f~~v~  247 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQTN---ATFLKLA  247 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHT---CEEEEEE
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHhC---CCEEEEe
Confidence            345688899999999999999999985   4455444

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.58  E-value=0.006  Score=56.81  Aligned_cols=29  Identities=38%  Similarity=0.426  Sum_probs=25.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+++.|...+.
T Consensus       135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~  163 (460)
T 2npi_A          135 NFEGPRVVIVGGSQTGKTSLSRTLCSYAL  163 (460)
T ss_dssp             SSSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence            45899999999999999999999988664

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.57  E-value=0.008  Score=48.38  Aligned_cols=25  Identities=32%  Similarity=0.185  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ...|+|.|++||||||+++.|....
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            4679999999999999999997643

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.57  E-value=0.01  Score=46.35  Aligned_cols=25  Identities=24%  Similarity=0.279  Sum_probs=22.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .+...|+|.|.+|+||||+++.|..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4677899999999999999999864

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.56  E-value=0.018  Score=51.53  Aligned_cols=39  Identities=21%  Similarity=0.253  Sum_probs=33.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+|-+|+|.|.+|+||||++..++......|.+|.++.
T Consensus        43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS   81 (338)
T 4a1f_A           43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS   81 (338)
T ss_dssp             BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            458899999999999999999999998876788877655

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.56  E-value=0.016  Score=53.58  Aligned_cols=39  Identities=15%  Similarity=0.262  Sum_probs=32.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~~~   90 (259)
                      ..+|-+++|.|++|+||||++..++..+.. .|.+|.++.
T Consensus       200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s  239 (454)
T 2r6a_A          200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS  239 (454)
T ss_dssp             BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            357899999999999999999999998764 577777655

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.55  E-value=0.0091  Score=47.66  Aligned_cols=25  Identities=36%  Similarity=0.254  Sum_probs=21.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .+..-|+|.|.+|+||||+++.|..
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~   47 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhc
Confidence            3456799999999999999999876

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.53  E-value=0.0081  Score=51.86  Aligned_cols=24  Identities=17%  Similarity=0.241  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .++|.|+.||||||+.+.|...+.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            488999999999999999998764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.49  E-value=0.016  Score=53.58  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=29.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCC-eEEEEe
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGH-SVELWR   90 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~-~v~~~~   90 (259)
                      .++|.|++|+||||++..+...+...|. .+..+.
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a   81 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAA   81 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence            8999999999999999999999988776 444443

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=95.47  E-value=0.021  Score=49.86  Aligned_cols=38  Identities=18%  Similarity=0.264  Sum_probs=33.1

Q ss_pred             CCccEEEEEcC-CCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGL-DRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~-dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++++|+|.|+ .|+||||++..|+..+...|.+|..++
T Consensus       102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID  140 (299)
T 3cio_A          102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID  140 (299)
T ss_dssp             CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence            45688999987 699999999999999988899988765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.47  E-value=0.0094  Score=56.58  Aligned_cols=28  Identities=18%  Similarity=0.222  Sum_probs=25.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            5689999999999999999999997644

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.44  E-value=0.0086  Score=53.61  Aligned_cols=28  Identities=21%  Similarity=0.112  Sum_probs=25.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ..+|.++.|.|++||||||++..|+-.+
T Consensus       128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          128 IETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3588999999999999999999998876

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.44  E-value=0.01  Score=47.94  Aligned_cols=24  Identities=33%  Similarity=0.231  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      ...|+|.|++|+||||+++.|...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            356899999999999999999764

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.44  E-value=0.02  Score=47.58  Aligned_cols=37  Identities=8%  Similarity=-0.096  Sum_probs=31.2

Q ss_pred             CccEEEEEcC-CCCCHHHHHHHHHHHHhhC-CCeEEEEe
Q 025041           54 RGALVVLEGL-DRCGKTSQCSRLLSYLEGL-GHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~-dGSGKSTla~~L~~~l~~~-g~~v~~~~   90 (259)
                      ++++|+|.+. .|+||||++..|+..|... |++|..++
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD   41 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD   41 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence            5677777755 6899999999999999888 99987765

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.42  E-value=0.0059  Score=54.31  Aligned_cols=29  Identities=21%  Similarity=0.363  Sum_probs=25.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+|.+++|.|+.||||||+.+.|...+..
T Consensus       169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~  197 (330)
T 2pt7_A          169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPK  197 (330)
T ss_dssp             HHTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            35789999999999999999999887754

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=95.41  E-value=0.019  Score=48.56  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++|+|.|-.|+||||++..|+..|...|++|..++
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD   36 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG   36 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence            46777899999999999999999998899987654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.41  E-value=0.0088  Score=52.30  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=22.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      ..|.+++|.|++||||||+.+.|...
T Consensus       167 l~geiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          167 LKGKISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             HSSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             hcCCeEEEECCCCCcHHHHHHHhccc
Confidence            35789999999999999999999653

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.39  E-value=0.016  Score=51.14  Aligned_cols=38  Identities=16%  Similarity=0.109  Sum_probs=29.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC------CCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL------GHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~------g~~v~~~~   90 (259)
                      .+|.++.|.|++|+||||++..++......      +..+.++.
T Consensus       105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~  148 (324)
T 2z43_A          105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID  148 (324)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred             CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence            478899999999999999999998765322      45666554

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=95.37  E-value=0.023  Score=48.85  Aligned_cols=39  Identities=15%  Similarity=0.072  Sum_probs=33.2

Q ss_pred             CCccEEEEEcC-CCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGL-DRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~-dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .++++|+|.|+ .|+||||++..|+..+...|.+|..++.
T Consensus        80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~  119 (271)
T 3bfv_A           80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDG  119 (271)
T ss_dssp             CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            35678989876 7999999999999999988999887653

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.36  E-value=0.0097  Score=53.25  Aligned_cols=25  Identities=16%  Similarity=0.161  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .-|.|.|++|+|||++|+.++..++
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhC
Confidence            4477789999999999999999984

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.35  E-value=0.011  Score=45.25  Aligned_cols=23  Identities=39%  Similarity=0.457  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      +-|++.|.+|+||||+++.|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35889999999999999999753

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.35  E-value=0.011  Score=52.17  Aligned_cols=23  Identities=30%  Similarity=0.544  Sum_probs=21.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHh
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +.|.|++|+||||+++.|+..+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~   61 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIF   61 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            89999999999999999999763

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=95.35  E-value=0.02  Score=47.03  Aligned_cols=35  Identities=20%  Similarity=0.253  Sum_probs=29.8

Q ss_pred             cEEEEEcC-CCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGL-DRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~-dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +.|+|.|. .|+||||++..|+..|...|++|..++
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d   37 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence            45777776 699999999999999999999987654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.34  E-value=0.01  Score=45.70  Aligned_cols=25  Identities=24%  Similarity=0.195  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      +..-|+|.|.+|+||||+++.|...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            3456899999999999999999763

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=95.32  E-value=0.013  Score=50.69  Aligned_cols=25  Identities=28%  Similarity=0.325  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      -+.|.|++|+||||+++.+++.+..
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~~   72 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELFG   72 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhcC
Confidence            4899999999999999999999854

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.32  E-value=0.013  Score=47.01  Aligned_cols=24  Identities=17%  Similarity=0.220  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~   36 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMY   36 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHh
Confidence            446699999999999999999875

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.31  E-value=0.035  Score=51.34  Aligned_cols=39  Identities=18%  Similarity=0.189  Sum_probs=33.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+|-+|+|.|.||+||||++-.++...-..|.+|.++.
T Consensus       194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS  232 (444)
T 3bgw_A          194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS  232 (444)
T ss_dssp             BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence            357899999999999999999999998866688877654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.30  E-value=0.013  Score=44.91  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..-|+|.|.+|+||||+++.|..
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            45699999999999999999875

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.30  E-value=0.013  Score=46.63  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=21.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .+..-|+|.|++|+||||+++.|..
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~   70 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTT   70 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3456899999999999999999865

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.30  E-value=0.011  Score=45.25  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      .-|++.|.+|+||||+++.|...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999999753

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=95.30  E-value=0.026  Score=46.47  Aligned_cols=38  Identities=18%  Similarity=0.214  Sum_probs=29.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..|.+.++.|+.||||||..-.....+...|..+..+.
T Consensus        18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k   55 (195)
T 1w4r_A           18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   55 (195)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence            46899999999999999666666666666788887664

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.29  E-value=0.021  Score=53.75  Aligned_cols=39  Identities=18%  Similarity=0.188  Sum_probs=32.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+|-++.|.|++||||||++..++..+...|..++.+.
T Consensus       278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~  316 (525)
T 1tf7_A          278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA  316 (525)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence            357889999999999999999999988876676665443

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=95.27  E-value=0.011  Score=54.59  Aligned_cols=28  Identities=29%  Similarity=0.332  Sum_probs=24.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+.-|.|.||+|+|||++|+.+++.++.
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~~   89 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELGS   89 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence            3445888999999999999999999863

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.26  E-value=0.012  Score=45.28  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..-|+|.|.+|+||||+++.|..
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~   26 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHh
Confidence            35689999999999999999875

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=95.25  E-value=0.023  Score=48.85  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++|+|.|-.|+||||++..|+..|...|++|..++
T Consensus         3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD   37 (289)
T 2afh_E            3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG   37 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence            46778899999999999999999998899987654

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=95.24  E-value=0.025  Score=49.91  Aligned_cols=38  Identities=21%  Similarity=0.224  Sum_probs=34.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ...++|+|.|=-|+||||++-.|+..|...|++|..++
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID   83 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG   83 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            45689999999999999999999999999999997665

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.23  E-value=0.0093  Score=55.29  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=23.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +.-|.+.||+|+||||+++.|++.++.
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~   76 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANA   76 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            344889999999999999999998853

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.21  E-value=0.021  Score=50.82  Aligned_cols=39  Identities=21%  Similarity=0.037  Sum_probs=30.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh------CCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG------LGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~------~g~~v~~~~   90 (259)
                      ..+|.++.|.|++|+||||++..++.....      .+..+.++.
T Consensus       119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~  163 (343)
T 1v5w_A          119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID  163 (343)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence            357899999999999999999999886321      355666554

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.20  E-value=0.0041  Score=54.90  Aligned_cols=28  Identities=21%  Similarity=0.246  Sum_probs=23.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ..+|.+++|.|++|+||||+++.|...+
T Consensus       170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          170 HFQDKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             GGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence            3578999999999999999999996544

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.19  E-value=0.012  Score=52.63  Aligned_cols=34  Identities=21%  Similarity=0.036  Sum_probs=26.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+.-|.|.|++|+||||+++.++..+   +..++.+.
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~  149 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQS---GATFFSIS  149 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEe
Confidence            45668899999999999999999887   44555444

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.19  E-value=0.013  Score=46.69  Aligned_cols=25  Identities=28%  Similarity=0.319  Sum_probs=21.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .+..-|+|.|.+|+||||+++.|..
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHc
Confidence            3456799999999999999999975

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.19  E-value=0.0099  Score=54.43  Aligned_cols=33  Identities=18%  Similarity=0.029  Sum_probs=26.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++=|.+.||||+|||++|+.++..++   .++..+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e~~---~~f~~v~  214 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHHTD---CKFIRVS  214 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHHHT---CEEEEEE
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHhhC---CCceEEE
Confidence            34577899999999999999999985   4455444

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.18  E-value=0.016  Score=45.20  Aligned_cols=25  Identities=16%  Similarity=0.214  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      +..-|+|.|.+|+||||+++.|...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4567999999999999999999764

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.18  E-value=0.011  Score=51.76  Aligned_cols=34  Identities=12%  Similarity=0.090  Sum_probs=26.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      ..-|.|.|++|+||||+++.+++.++   ..++.+..
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~---~~~~~~~~   88 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMS---ANIKTTAA   88 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTT---CCEEEEEG
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhC---CCeEEecc
Confidence            34588999999999999999988874   34444443

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.17  E-value=0.014  Score=51.69  Aligned_cols=27  Identities=26%  Similarity=0.199  Sum_probs=24.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +..+.|.|++|+||||+++.+++.+..
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            457889999999999999999998864

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=95.17  E-value=0.014  Score=52.23  Aligned_cols=37  Identities=11%  Similarity=0.003  Sum_probs=28.2

Q ss_pred             CccEEEE--EcCCCCCHHHHHHHHHHHHhhC------CCeEEEEe
Q 025041           54 RGALVVL--EGLDRCGKTSQCSRLLSYLEGL------GHSVELWR   90 (259)
Q Consensus        54 ~g~lIvi--eG~dGSGKSTla~~L~~~l~~~------g~~v~~~~   90 (259)
                      .+..++|  .|++|+||||+++.+.+.+...      ++.+..+.
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~   93 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN   93 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence            4556777  9999999999999999988653      44555554

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.17  E-value=0.021  Score=53.10  Aligned_cols=34  Identities=15%  Similarity=0.007  Sum_probs=27.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++=|.+.||||+|||++|+.++..++   .+++.+.
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e~~---~~fi~vs  275 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANRTD---ATFIRVI  275 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHHHT---CEEEEEE
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccC---CCeEEEE
Confidence            455688899999999999999999985   3444444

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.16  E-value=0.011  Score=54.44  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=23.1

Q ss_pred             CCCccE--EEEEcCCCCCHHHHHHHHHHH
Q 025041           52 DSRGAL--VVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        52 ~~~g~l--IvieG~dGSGKSTla~~L~~~   78 (259)
                      ..+|-+  |+|.|++||||||+++.|...
T Consensus        37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           37 VSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            467888  999999999999999999753

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=95.16  E-value=0.032  Score=49.17  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=31.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++++.|-.|+||||++..|+..+...|.+|..++
T Consensus        15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD   49 (324)
T 3zq6_A           15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS   49 (324)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence            67888899999999999999999998899987655

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.14  E-value=0.014  Score=45.11  Aligned_cols=23  Identities=26%  Similarity=0.291  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..-|+|.|.+|+||||+++.|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            45689999999999999999875

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.14  E-value=0.011  Score=47.04  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .-|+|.|.+|+||||+++.|..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999999975

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.12  E-value=0.019  Score=45.46  Aligned_cols=25  Identities=32%  Similarity=0.252  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      +..-|+|.|.+|+||||+++.|...
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4466999999999999999999764

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=95.12  E-value=0.015  Score=50.00  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=22.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +.|.|++|+||||+++.+++.+..
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l~~   64 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDLFG   64 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHHHT
T ss_pred             EEEECcCCcCHHHHHHHHHHHhcC
Confidence            899999999999999999999854

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.12  E-value=0.012  Score=56.30  Aligned_cols=29  Identities=21%  Similarity=0.358  Sum_probs=26.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+++.|...+.
T Consensus       366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          366 IPQGKTVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36889999999999999999999988775

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.12  E-value=0.013  Score=45.06  Aligned_cols=22  Identities=36%  Similarity=0.404  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .-|+|.|.+|+||||+++.|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999999875

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.09  E-value=0.012  Score=56.27  Aligned_cols=29  Identities=24%  Similarity=0.358  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|..++|.|+.||||||+++.|...++
T Consensus       366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          366 IPAGKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence            36889999999999999999999987664

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.09  E-value=0.01  Score=56.05  Aligned_cols=29  Identities=14%  Similarity=0.281  Sum_probs=25.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+|..|+|.|+.||||||+.+.|...+..
T Consensus       258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~  286 (511)
T 2oap_1          258 EHKFSAIVVGETASGKTTTLNAIMMFIPP  286 (511)
T ss_dssp             HTTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            35778999999999999999999887753

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.08  E-value=0.013  Score=53.91  Aligned_cols=26  Identities=23%  Similarity=0.105  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ++.+|+|.|++||||||+.+.|.-.+
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence            34499999999999999999998744

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.08  E-value=0.012  Score=45.42  Aligned_cols=21  Identities=24%  Similarity=0.194  Sum_probs=18.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLL   76 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~   76 (259)
                      .-|+|.|.+|+||||+++.|.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            358999999999999999885

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.08  E-value=0.014  Score=45.59  Aligned_cols=23  Identities=30%  Similarity=0.299  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..-|+|.|.+|+||||+++.|..
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            35699999999999999999964

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.07  E-value=0.014  Score=45.64  Aligned_cols=24  Identities=29%  Similarity=0.283  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHh
Confidence            345699999999999999999875

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.05  E-value=0.013  Score=45.50  Aligned_cols=23  Identities=39%  Similarity=0.215  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..-|+|.|.+|+||||+++.|..
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCccHHHHHHHHhc
Confidence            35699999999999999999864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.03  E-value=0.014  Score=44.98  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .-|+|.|.+|+||||+++.|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            4589999999999999999974

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.03  E-value=0.03  Score=51.62  Aligned_cols=39  Identities=18%  Similarity=0.192  Sum_probs=32.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~~~   90 (259)
                      ..+|-+++|.|++|+||||++..++..... .|.+|.++.
T Consensus       197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s  236 (444)
T 2q6t_A          197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS  236 (444)
T ss_dssp             CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            457899999999999999999999988764 477777654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.01  E-value=0.014  Score=45.16  Aligned_cols=20  Identities=25%  Similarity=0.298  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLL   76 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~   76 (259)
                      -|+|.|.+|+||||+++.|.
T Consensus         4 ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999985

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=95.00  E-value=0.038  Score=48.00  Aligned_cols=39  Identities=18%  Similarity=0.337  Sum_probs=32.6

Q ss_pred             CCccEEEEEcC-CCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGL-DRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~-dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .++++|+|.|+ .|+||||++..|+..+...|.+|..++.
T Consensus        90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~  129 (286)
T 3la6_A           90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDC  129 (286)
T ss_dssp             TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Confidence            45678877765 7999999999999999988999887653

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=95.00  E-value=0.033  Score=46.00  Aligned_cols=37  Identities=22%  Similarity=0.185  Sum_probs=30.2

Q ss_pred             ccEEEEEc-CCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           55 GALVVLEG-LDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        55 g~lIvieG-~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      +++|+|.| -.|+||||++..|+..|...|++|..++.
T Consensus         2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~   39 (237)
T 1g3q_A            2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDG   39 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            45677764 56899999999999999988999877653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.99  E-value=0.015  Score=44.85  Aligned_cols=25  Identities=32%  Similarity=0.270  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      +..-|+|.|.+|+||||+++.|...
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3456999999999999999999753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=94.99  E-value=0.02  Score=45.32  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      ...-|+|.|.+|+||||+++.|...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcC
Confidence            3457899999999999999998653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.98  E-value=0.018  Score=46.85  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      +..-|+|.|++|+||||+++.|....
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45679999999999999999997643

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=94.97  E-value=0.015  Score=44.90  Aligned_cols=24  Identities=38%  Similarity=0.253  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCE   28 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHc
Confidence            345699999999999999999875

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.96  E-value=0.016  Score=46.94  Aligned_cols=25  Identities=20%  Similarity=0.167  Sum_probs=20.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .+..-|+|.|.+|+||||+++.+..
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHh
Confidence            3456799999999999999998875

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.96  E-value=0.019  Score=44.11  Aligned_cols=23  Identities=17%  Similarity=0.255  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..-|+|.|.+|+||||+++.|..
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            34589999999999999999975

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.96  E-value=0.015  Score=55.20  Aligned_cols=28  Identities=25%  Similarity=0.324  Sum_probs=25.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+
T Consensus        44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           44 VKEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4689999999999999999999997654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.94  E-value=0.02  Score=44.71  Aligned_cols=24  Identities=29%  Similarity=0.290  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHh
Confidence            456799999999999999999974

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.93  E-value=0.018  Score=46.02  Aligned_cols=25  Identities=16%  Similarity=0.262  Sum_probs=21.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .+..-|+|.|.+|+||||+++.|..
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHh
Confidence            3456799999999999999998875

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=94.91  E-value=0.016  Score=51.58  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=22.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      +|.++.|.|++|+||||++..++..
T Consensus       122 ~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          122 ASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            5677899999999999999999887

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.91  E-value=0.017  Score=44.52  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..-|+|.|.+|+||||+++.|..
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            45699999999999999999975

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=94.90  E-value=0.015  Score=53.09  Aligned_cols=26  Identities=31%  Similarity=0.425  Sum_probs=22.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      .+|.++.|.|++||||||++..|+-.
T Consensus       176 ~~Gei~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          176 ETGSITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Confidence            47899999999999999999987643

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=94.90  E-value=0.036  Score=47.10  Aligned_cols=38  Identities=21%  Similarity=0.343  Sum_probs=33.4

Q ss_pred             CCccEEEEEcC-CCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGL-DRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~-dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+++.|.|.|. .|+|||+++..|.+.|..+|++|..+.
T Consensus        19 ~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK   57 (242)
T 3qxc_A           19 FQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK   57 (242)
T ss_dssp             CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             hcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence            45678888888 899999999999999999999988764

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.86  E-value=0.03  Score=50.47  Aligned_cols=36  Identities=17%  Similarity=0.017  Sum_probs=29.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +.-++|.|++||||||+++.|...+...|..+..++
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            445788899999999999999988877777776654

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=94.86  E-value=0.012  Score=51.11  Aligned_cols=35  Identities=20%  Similarity=0.121  Sum_probs=26.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP   92 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p   92 (259)
                      +.-+.|.|++|+||||+++.+++.++   .++..+..+
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~---~~~~~~~~~   72 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELG---VNLRVTSGP   72 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHT---CCEEEECTT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhC---CCEEEEecc
Confidence            35678899999999999999999884   344444433

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.86  E-value=0.017  Score=45.55  Aligned_cols=24  Identities=21%  Similarity=0.019  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhc
Confidence            346699999999999999999975

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=94.86  E-value=0.034  Score=44.79  Aligned_cols=36  Identities=14%  Similarity=0.163  Sum_probs=30.0

Q ss_pred             cEEEEE-cCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           56 ALVVLE-GLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        56 ~lIvie-G~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      ++|+|. +-.|+||||++..|+..|...|.+|..++.
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~   38 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDT   38 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence            456666 557799999999999999989999887763

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=94.85  E-value=0.018  Score=45.71  Aligned_cols=25  Identities=20%  Similarity=0.267  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      +..-|+|.|.+|+||||+++.|...
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcC
Confidence            4467999999999999999999753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=94.84  E-value=0.015  Score=45.36  Aligned_cols=24  Identities=21%  Similarity=0.167  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc
Confidence            446699999999999999999854

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.84  E-value=0.018  Score=49.68  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=22.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +.|.|++|+||||+++.+++.+..
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l~~   68 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHELLG   68 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             EEEECcCCCCHHHHHHHHHHHhcC
Confidence            899999999999999999999854

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=94.83  E-value=0.018  Score=45.30  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..-|+|.|.+|+||||+++.|..
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~   26 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQ   26 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHh
Confidence            45699999999999999999975

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=94.82  E-value=0.014  Score=54.04  Aligned_cols=25  Identities=24%  Similarity=0.314  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .-+.|.|++|+||||+++.|++.++
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4589999999999999999999874

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=94.81  E-value=0.02  Score=44.07  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|+|.|.+|+||||+++.|..
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            388999999999999999965

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=94.80  E-value=0.0089  Score=52.43  Aligned_cols=27  Identities=26%  Similarity=0.372  Sum_probs=23.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +.-+.|.|++|+|||++++.+++.++.
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~~   72 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMDL   72 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            345888999999999999999998753

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=94.80  E-value=0.019  Score=45.62  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            456799999999999999999965

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=94.78  E-value=0.0086  Score=46.23  Aligned_cols=24  Identities=13%  Similarity=-0.043  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      .-|.|.|++|+|||++|+.+....
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CcEEEECCCCccHHHHHHHHHHhC
Confidence            347789999999999999987654

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=94.77  E-value=0.032  Score=53.65  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=28.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhh----CCCeEEEE
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEG----LGHSVELW   89 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~----~g~~v~~~   89 (259)
                      .+.+++|.|++|+||||++..+...+..    .+..+...
T Consensus       163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~  202 (608)
T 1w36_D          163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA  202 (608)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence            4689999999999999999999888863    35555543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.77  E-value=0.014  Score=45.91  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=20.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLL   76 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~   76 (259)
                      .+..-|+|.|.+|+||||+++.|.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            356779999999999999998885

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=94.76  E-value=0.044  Score=46.43  Aligned_cols=38  Identities=13%  Similarity=0.107  Sum_probs=31.0

Q ss_pred             CccEEEEEc-CCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           54 RGALVVLEG-LDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        54 ~g~lIvieG-~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .+++|+|.+ -.|+||||++..|+..|...|++|..++.
T Consensus        17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~   55 (262)
T 2ph1_A           17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDA   55 (262)
T ss_dssp             CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            456777764 55799999999999999988999887653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.75  E-value=0.019  Score=45.93  Aligned_cols=25  Identities=32%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .+..-|+|.|.+|+||||+++.|..
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~   45 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQ   45 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhc
Confidence            4456799999999999999999975

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=94.75  E-value=0.021  Score=45.25  Aligned_cols=25  Identities=24%  Similarity=0.321  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      +..-|+|.|.+|+||||+++.|...
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcC
Confidence            4466899999999999999999763

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=94.75  E-value=0.012  Score=58.75  Aligned_cols=22  Identities=41%  Similarity=0.531  Sum_probs=19.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCS   73 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~   73 (259)
                      -+++++++|+|++||||||++-
T Consensus        33 iP~~~l~viTGvSGSGKSSLaf   54 (842)
T 2vf7_A           33 VPRDALVVFTGVSGSGKSSLAF   54 (842)
T ss_dssp             EESSSEEEEESSTTSSHHHHHT
T ss_pred             ecCCCEEEEECCCCCCHHHHHH
Confidence            3689999999999999999983

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=94.75  E-value=0.018  Score=50.37  Aligned_cols=37  Identities=16%  Similarity=0.125  Sum_probs=28.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+.-|.|.|++|+|||++|+.+.......+.+++.++
T Consensus        24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~   60 (304)
T 1ojl_A           24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLN   60 (304)
T ss_dssp             TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred             CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence            3455788999999999999999987755555554444

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=94.74  E-value=0.019  Score=44.62  Aligned_cols=25  Identities=12%  Similarity=-0.019  Sum_probs=21.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      +..-|+|.|.+|+||||+++.|...
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3466999999999999999999753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.73  E-value=0.018  Score=44.83  Aligned_cols=23  Identities=30%  Similarity=0.354  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..-|+|.|.+|+||||+++.|..
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            35689999999999999999974

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.72  E-value=0.019  Score=53.00  Aligned_cols=33  Identities=18%  Similarity=0.055  Sum_probs=26.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++=|.+.||||+|||++|+.++..++.   ++..+.
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e~~~---~fi~v~  248 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQTSA---TFLRIV  248 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHHHTC---EEEEEE
T ss_pred             CCCCceECCCCchHHHHHHHHHHHhCC---CEEEEE
Confidence            456888999999999999999999853   444443

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.71  E-value=0.018  Score=50.32  Aligned_cols=25  Identities=24%  Similarity=0.410  Sum_probs=22.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .++..|+|.|.+|+||||+.+.|..
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g   30 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLG   30 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHC
Confidence            4566899999999999999999975

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=94.71  E-value=0.021  Score=45.76  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=20.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            455789999999999999999975

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=94.70  E-value=0.02  Score=44.91  Aligned_cols=24  Identities=17%  Similarity=0.220  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~   40 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMY   40 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Confidence            345699999999999999999875

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=94.70  E-value=0.017  Score=45.53  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|+|.|.+|+||||+++.|..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999865

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.69  E-value=0.014  Score=55.91  Aligned_cols=29  Identities=28%  Similarity=0.389  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+++.|...+.
T Consensus       378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          378 IKPGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             CCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            46899999999999999999999977664

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=94.69  E-value=0.02  Score=47.80  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHcC
Confidence            456799999999999999999875

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=94.69  E-value=0.03  Score=48.26  Aligned_cols=37  Identities=14%  Similarity=0.170  Sum_probs=31.4

Q ss_pred             CccEEEEEc---CCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEG---LDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG---~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++++|+|.+   -.|+||||++..|+..|...|++|..++
T Consensus        33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD   72 (298)
T 2oze_A           33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID   72 (298)
T ss_dssp             HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence            456777776   7899999999999999988899987654

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=94.68  E-value=0.045  Score=48.40  Aligned_cols=36  Identities=22%  Similarity=0.212  Sum_probs=31.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..++++.|-.|+||||++..|+..+...|++|..++
T Consensus        19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD   54 (329)
T 2woo_A           19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS   54 (329)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred             CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence            467888899999999999999999999999987654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=94.68  E-value=0.022  Score=45.14  Aligned_cols=24  Identities=38%  Similarity=0.530  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+.+.|..
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999999864

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=94.67  E-value=0.022  Score=45.86  Aligned_cols=26  Identities=31%  Similarity=0.291  Sum_probs=21.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      .+..-|+|.|.+|+||||+++.|...
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            34567999999999999999999763

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=94.66  E-value=0.022  Score=44.49  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=22.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +.+.+|.|+.||||||+.+.|.=.|.
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l~   48 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGLY   48 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence            34789999999999999999976663

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=94.64  E-value=0.046  Score=48.77  Aligned_cols=37  Identities=22%  Similarity=0.262  Sum_probs=32.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ...++++.|-.|+||||++..|+..+...|.+|..++
T Consensus        25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD   61 (349)
T 3ug7_A           25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS   61 (349)
T ss_dssp             SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred             CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence            3467788899999999999999999998999987765

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=94.64  E-value=0.02  Score=45.03  Aligned_cols=24  Identities=13%  Similarity=0.077  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~   32 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIE   32 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHc
Confidence            446699999999999999999875

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=94.64  E-value=0.053  Score=46.28  Aligned_cols=36  Identities=28%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             ccEEEEEcCC-CCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLD-RCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~d-GSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      -+.|.|.|.+ |+||||++..|.+.|..+|++|..+.
T Consensus        26 m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK   62 (251)
T 3fgn_A           26 MTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK   62 (251)
T ss_dssp             CEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence            3578899987 99999999999999999999987765

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.61  E-value=0.022  Score=44.56  Aligned_cols=24  Identities=29%  Similarity=0.234  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~   32 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKD   32 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHh
Confidence            446699999999999999999865

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=94.61  E-value=0.019  Score=52.93  Aligned_cols=34  Identities=12%  Similarity=-0.009  Sum_probs=26.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +.-|.|.||+|+|||++++.++..+.  +..++.+.
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~  200 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSIS  200 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEEC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEe
Confidence            45688899999999999999999873  33444443

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=94.61  E-value=0.022  Score=44.98  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999999864

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=94.59  E-value=0.0098  Score=52.20  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=21.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHh
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~   80 (259)
                      |.|.|++|+|||++++.+++.+.
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            88999999999999999999875

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=94.59  E-value=0.021  Score=49.78  Aligned_cols=35  Identities=11%  Similarity=0.037  Sum_probs=27.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .+.++.+.|++|+||||+++.+++.++   ..+..++.
T Consensus        47 ~~~~~L~~G~~G~GKT~la~~la~~l~---~~~~~i~~   81 (324)
T 3u61_B           47 IPHIILHSPSPGTGKTTVAKALCHDVN---ADMMFVNG   81 (324)
T ss_dssp             CCSEEEECSSTTSSHHHHHHHHHHHTT---EEEEEEET
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhC---CCEEEEcc
Confidence            456788899999999999999998883   45555553

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.58  E-value=0.012  Score=56.23  Aligned_cols=29  Identities=17%  Similarity=0.367  Sum_probs=25.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+.+.|...+.
T Consensus       364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          364 IEKGETVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            36899999999999999999999877664

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=94.57  E-value=0.039  Score=46.67  Aligned_cols=38  Identities=16%  Similarity=0.208  Sum_probs=30.8

Q ss_pred             CCccEEEEE-cCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLE-GLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvie-G~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .++++|+|. |-.|+||||++..|+..|. .|++|..++.
T Consensus        25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~   63 (267)
T 3k9g_A           25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDM   63 (267)
T ss_dssp             -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEE
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEEC
Confidence            456777775 6678999999999999999 8999877653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.56  E-value=0.017  Score=54.79  Aligned_cols=28  Identities=21%  Similarity=0.351  Sum_probs=25.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+|-+++|.|+.||||||+++.|.-.+.
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4789999999999999999999987654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=94.56  E-value=0.024  Score=53.32  Aligned_cols=23  Identities=26%  Similarity=0.257  Sum_probs=21.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHh
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~   80 (259)
                      |.|.||+|+||||+++.|+..+.
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            88999999999999999998774

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=94.55  E-value=0.048  Score=48.51  Aligned_cols=37  Identities=24%  Similarity=0.229  Sum_probs=32.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+++++.|-.|+||||++..|+..+...|.+|..++
T Consensus        15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid   51 (334)
T 3iqw_A           15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS   51 (334)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence            3478899999999999999999999998899987665

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=94.55  E-value=0.023  Score=48.54  Aligned_cols=24  Identities=29%  Similarity=0.241  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      -.-|+|.|++|+||||+.+.|...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            356899999999999999999653

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.55  E-value=0.024  Score=50.73  Aligned_cols=30  Identities=10%  Similarity=-0.004  Sum_probs=26.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..+|-.+.|.|+.||||||+.+.|...+..
T Consensus        68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           68 CGIGQRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            357899999999999999999999988753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.54  E-value=0.033  Score=44.33  Aligned_cols=25  Identities=16%  Similarity=0.058  Sum_probs=21.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .+..-|+|.|.+|+||||+++.|..
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhc
Confidence            3456699999999999999999875

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.53  E-value=0.026  Score=44.73  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999999874

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=94.52  E-value=0.052  Score=50.65  Aligned_cols=39  Identities=10%  Similarity=0.029  Sum_probs=33.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~   90 (259)
                      ..+|.+++|.|++|+||||++-.++...-.. |.+|.++.
T Consensus       239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s  278 (503)
T 1q57_A          239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM  278 (503)
T ss_dssp             CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred             cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence            4578999999999999999999999988655 77777655

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=94.52  E-value=0.041  Score=53.10  Aligned_cols=37  Identities=19%  Similarity=0.174  Sum_probs=29.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      ..+-+|-||||+||||++..+..++-..|..+..+.+
T Consensus       205 ~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~  241 (646)
T 4b3f_X          205 KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP  241 (646)
T ss_dssp             SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence            3578899999999999888888877777877765543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=94.51  E-value=0.021  Score=45.16  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=20.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .+..-|+|.|.+|+||||+++.|..
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHT
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhc
Confidence            4567799999999999999999864

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=94.50  E-value=0.049  Score=48.39  Aligned_cols=38  Identities=16%  Similarity=0.172  Sum_probs=29.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC--CCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL--GHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~--g~~v~~~~~   91 (259)
                      .+| ++.|.|++|+||||++-.+.......  |-.+.++..
T Consensus        27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~   66 (333)
T 3io5_A           27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS   66 (333)
T ss_dssp             CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            468 89999999999999998887776543  556666553

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=94.50  E-value=0.023  Score=51.21  Aligned_cols=33  Identities=15%  Similarity=-0.007  Sum_probs=26.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +.-|.|.|++|+|||++++.++..++   ..++.+.
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~---~~~~~v~  180 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESN---ATFFNIS  180 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTT---CEEEEEC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhc---CcEEEee
Confidence            46789999999999999999988864   4555443

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.50  E-value=0.021  Score=54.08  Aligned_cols=28  Identities=25%  Similarity=0.344  Sum_probs=25.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+|-+++|.|+.||||||+++.|.-.+.
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4789999999999999999999987654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=94.48  E-value=0.025  Score=44.25  Aligned_cols=24  Identities=33%  Similarity=0.311  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHc
Confidence            445699999999999999999875

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=94.48  E-value=0.025  Score=44.34  Aligned_cols=24  Identities=21%  Similarity=0.169  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc
Confidence            446699999999999999999875

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.47  E-value=0.021  Score=44.82  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            346799999999999999999974

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.47  E-value=0.025  Score=45.69  Aligned_cols=24  Identities=29%  Similarity=0.205  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHhh
Confidence            456799999999999999999864

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=94.46  E-value=0.029  Score=52.38  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=21.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHh
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~   80 (259)
                      |.|.||+|+||||+++.++..++
T Consensus        52 vLL~GppGtGKT~Laraia~~~~   74 (476)
T 2ce7_A           52 ILLVGPPGTGKTLLARAVAGEAN   74 (476)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999874

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=94.46  E-value=0.033  Score=43.77  Aligned_cols=25  Identities=16%  Similarity=0.170  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      +..-|+|.|.+|+||||+++.|...
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4567999999999999999999753

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=94.44  E-value=0.048  Score=51.94  Aligned_cols=37  Identities=24%  Similarity=0.184  Sum_probs=33.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+++++.|..|+||||++..|+..+...|.+|..+.
T Consensus         7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd   43 (589)
T 1ihu_A            7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS   43 (589)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence            4678999999999999999999999998999987654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.43  E-value=0.025  Score=44.94  Aligned_cols=23  Identities=22%  Similarity=0.153  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..-|+|.|.+|+||||+++.|..
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~   38 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFAD   38 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHc
Confidence            45699999999999999999975

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.43  E-value=0.022  Score=54.79  Aligned_cols=28  Identities=25%  Similarity=0.341  Sum_probs=25.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+|-+++|.|+.||||||+.+.|.-.+.
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4788999999999999999999987654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.43  E-value=0.03  Score=43.81  Aligned_cols=24  Identities=29%  Similarity=0.101  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.+..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Confidence            456699999999999999998864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=94.42  E-value=0.032  Score=44.42  Aligned_cols=24  Identities=25%  Similarity=0.228  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.+..
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999988865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.41  E-value=0.02  Score=55.12  Aligned_cols=28  Identities=29%  Similarity=0.328  Sum_probs=24.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ..+|-+++|.|+.||||||+.+.|.-.+
T Consensus       114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          114 VKDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            4689999999999999999999997654

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.41  E-value=0.016  Score=55.49  Aligned_cols=29  Identities=21%  Similarity=0.326  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|+.||||||+++.|...++
T Consensus       366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          366 VKPGSLVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             ECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            36789999999999999999999977664

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.40  E-value=0.026  Score=44.93  Aligned_cols=26  Identities=23%  Similarity=0.071  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      +-.-|+|.|.+|+||||+++.|...-
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            34569999999999999999997643

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.40  E-value=0.03  Score=52.68  Aligned_cols=28  Identities=21%  Similarity=0.246  Sum_probs=23.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHH--HHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSR--LLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~--L~~~l~   80 (259)
                      .+|-+++|.|++||||||+++.  +.-.+.
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~   66 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE   66 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            5889999999999999999999  444444

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=94.37  E-value=0.032  Score=51.77  Aligned_cols=26  Identities=27%  Similarity=0.190  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .-++|.|++|+||||+++.|+..+..
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~l~~  227 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQIIN  227 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHHHh
Confidence            34678999999999999999999854

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=94.36  E-value=0.029  Score=45.01  Aligned_cols=25  Identities=24%  Similarity=0.187  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      +..-|+|.|.+|+||||+++.|...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4567999999999999999999653

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=94.36  E-value=0.05  Score=45.51  Aligned_cols=36  Identities=19%  Similarity=0.318  Sum_probs=29.9

Q ss_pred             ccEEEEE-cCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLE-GLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvie-G~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +++|+|. +-.|+||||++..|+..|...|++|..++
T Consensus         2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD   38 (260)
T 3q9l_A            2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID   38 (260)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence            4567775 45679999999999999998999987765

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=94.36  E-value=0.038  Score=44.71  Aligned_cols=24  Identities=25%  Similarity=0.054  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999999875

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.34  E-value=0.032  Score=44.38  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHc
Confidence            346699999999999999999975

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=94.33  E-value=0.024  Score=45.78  Aligned_cols=24  Identities=33%  Similarity=0.441  Sum_probs=20.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            344589999999999999999853

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=94.32  E-value=0.027  Score=44.72  Aligned_cols=23  Identities=30%  Similarity=0.183  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..-|+|.|.+|+||||+++.|..
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYAD   44 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            45699999999999999999875

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=94.32  E-value=0.041  Score=54.05  Aligned_cols=34  Identities=21%  Similarity=0.132  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      -+.|.||+|+|||++|+.|++.+...+.+++.++
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~  556 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRID  556 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe
Confidence            5889999999999999999999966566666554

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.31  E-value=0.029  Score=45.00  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=20.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLL   76 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~   76 (259)
                      .+..-|+|.|.+|+||||+++.|.
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH
Confidence            345679999999999999999885

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.31  E-value=0.028  Score=51.91  Aligned_cols=31  Identities=19%  Similarity=0.158  Sum_probs=27.0

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ...+|-++.|.|+.||||||+.+.|+..+..
T Consensus       153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             CCBTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            3468899999999999999999999988753

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=94.31  E-value=0.028  Score=51.22  Aligned_cols=26  Identities=12%  Similarity=0.180  Sum_probs=23.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..+|..|+|.|++|+||||+.+.|..
T Consensus        17 v~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           17 PGNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHC
Confidence            35688999999999999999999987

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=94.29  E-value=0.035  Score=46.88  Aligned_cols=37  Identities=30%  Similarity=0.362  Sum_probs=31.6

Q ss_pred             CccEEEEE-cCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLE-GLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvie-G~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++++|+|. +-.|+||||++..|+..|...|++|..++
T Consensus         5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   42 (257)
T 1wcv_1            5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD   42 (257)
T ss_dssp             CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence            56788887 45689999999999999988899988765

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=94.29  E-value=0.03  Score=48.72  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=22.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      |.+++|.|+.|+||||+++.+.+.+
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~~   55 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNER   55 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHc
Confidence            4799999999999999999998875

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=94.28  E-value=0.027  Score=44.02  Aligned_cols=24  Identities=29%  Similarity=0.311  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            445699999999999999999876

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=94.28  E-value=0.06  Score=45.12  Aligned_cols=35  Identities=17%  Similarity=0.157  Sum_probs=31.0

Q ss_pred             cEEEEEcC-CCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGL-DRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~-dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +-|.|.|. +|+||||++..|...|..+|++|..+.
T Consensus         5 k~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K   40 (228)
T 3of5_A            5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK   40 (228)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             cEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence            56888898 799999999999999999999987654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.27  E-value=0.032  Score=44.59  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            346699999999999999999976

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=94.27  E-value=0.028  Score=44.48  Aligned_cols=25  Identities=20%  Similarity=0.203  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      +..-|+|.|.+|+||||+++.|...
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            4467999999999999999999753

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=94.24  E-value=0.018  Score=58.14  Aligned_cols=21  Identities=52%  Similarity=0.711  Sum_probs=19.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQC   72 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla   72 (259)
                      -++++++||+|++||||||+|
T Consensus        41 iP~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           41 IPRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             EETTSEEEEEESTTSSHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHH
Confidence            367899999999999999997

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=94.23  E-value=0.052  Score=48.72  Aligned_cols=38  Identities=11%  Similarity=0.205  Sum_probs=32.7

Q ss_pred             CCccEEEEEc-CCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEG-LDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG-~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++++|+|.| -.|+||||++..|+..|...|.+|..++
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD  179 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN  179 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence            4678888875 8899999999999999988899988766

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=94.22  E-value=0.032  Score=48.57  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=23.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+++|.|+.|+||||+++.+.+.+..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~   56 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNL   56 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCC
Confidence            59999999999999999999988753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.20  E-value=0.027  Score=45.16  Aligned_cols=23  Identities=26%  Similarity=0.184  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..-|+|.|.+|+||||+++.|..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            45699999999999999999865

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=94.20  E-value=0.032  Score=45.24  Aligned_cols=25  Identities=36%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      +..-|+|.|.+|+||||+++.|...
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999763

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.19  E-value=0.033  Score=44.16  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc
Confidence            446799999999999999999865

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.18  E-value=0.029  Score=49.14  Aligned_cols=26  Identities=15%  Similarity=0.130  Sum_probs=23.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      .+|.++.|.|++|+||||++..++..
T Consensus        96 ~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           96 ESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999999875

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=94.18  E-value=0.033  Score=44.70  Aligned_cols=24  Identities=33%  Similarity=0.368  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHh
Confidence            456799999999999999999964

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=94.18  E-value=0.042  Score=49.34  Aligned_cols=26  Identities=31%  Similarity=0.392  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .| +.+|.|+.||||||+.+.|.=.+-
T Consensus        23 ~g-~~~i~G~NGaGKTTll~ai~~al~   48 (365)
T 3qf7_A           23 SG-ITVVEGPNGAGKSSLFEAISFALF   48 (365)
T ss_dssp             SE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence            56 788999999999999999986553

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=94.17  E-value=0.056  Score=46.51  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=30.8

Q ss_pred             ccEEEEE-cCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           55 GALVVLE-GLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        55 g~lIvie-G~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      +++|+|. +-.|+||||++..|+..|...|++|..++.
T Consensus         4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~   41 (286)
T 2xj4_A            4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDL   41 (286)
T ss_dssp             CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence            4577776 456899999999999999989999887663

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=94.17  E-value=0.039  Score=44.41  Aligned_cols=24  Identities=25%  Similarity=0.270  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ...-|+|.|.+|+||||+++.|..
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            345699999999999999999875

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=94.16  E-value=0.016  Score=58.30  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=19.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQC   72 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla   72 (259)
                      -++++++||+|++||||||+|
T Consensus        21 ip~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A           21 IPKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             EETTSEEEEEESTTSSSHHHH
T ss_pred             cCCCcEEEEECCCCCcHHHHH
Confidence            468999999999999999998

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=94.16  E-value=0.03  Score=45.14  Aligned_cols=24  Identities=21%  Similarity=0.123  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc
Confidence            345699999999999999999865

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.14  E-value=0.034  Score=44.80  Aligned_cols=25  Identities=20%  Similarity=0.232  Sum_probs=20.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .+..-|+|.|.+|+||||+++.|..
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            3456799999999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.13  E-value=0.03  Score=53.95  Aligned_cols=27  Identities=26%  Similarity=0.355  Sum_probs=23.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +|-+++|.|+.||||||+.+.|.-.+.
T Consensus       377 ~GEiv~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          377 DSEILVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             TTCEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred             cceEEEEECCCCCcHHHHHHHHhcCCC
Confidence            447899999999999999999987664

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=94.12  E-value=0.031  Score=47.13  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +...|+|.|.+|+||||+++.|..
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHhC
Confidence            456799999999999999999964

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.11  E-value=0.023  Score=45.88  Aligned_cols=22  Identities=23%  Similarity=0.169  Sum_probs=19.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLL   76 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~   76 (259)
                      ..-|+|.|.+|+||||+++.|.
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
Confidence            4569999999999999999984

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=94.11  E-value=0.032  Score=44.11  Aligned_cols=26  Identities=23%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..-|+|.|.+|+||||+++.|...+.
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            45699999999999999988876554

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=94.08  E-value=0.028  Score=52.57  Aligned_cols=27  Identities=19%  Similarity=0.322  Sum_probs=24.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+ -+++|.|+.||||||+.+.|.-.+.
T Consensus        28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~   54 (483)
T 3euj_A           28 DE-LVTTLSGGNGAGKSTTMAGFVTALI   54 (483)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence            35 7999999999999999999988774

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=94.05  E-value=0.073  Score=44.76  Aligned_cols=36  Identities=28%  Similarity=0.330  Sum_probs=29.6

Q ss_pred             ccEEEE-EcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVL-EGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvi-eG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +++|+| .+-.|+||||++..|+..|...|.+|..++
T Consensus         2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD   38 (263)
T 1hyq_A            2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVD   38 (263)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence            345666 466789999999999999988899987765

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.05  E-value=0.029  Score=44.86  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..-|+|.|.+|+||||+++.|..
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            45699999999999999999964

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.04  E-value=0.032  Score=45.35  Aligned_cols=25  Identities=28%  Similarity=0.139  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      +..-|+|.|.+|+||||+++.|...
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3456999999999999999998753

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.04  E-value=0.03  Score=45.12  Aligned_cols=24  Identities=13%  Similarity=0.090  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHh
Confidence            456799999999999999999864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.02  E-value=0.032  Score=45.15  Aligned_cols=24  Identities=25%  Similarity=0.256  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++.|..
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhc
Confidence            345699999999999999999875

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.02  E-value=0.032  Score=45.41  Aligned_cols=25  Identities=24%  Similarity=0.321  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      +..-|+|.|.+|+||||+++.|...
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3456999999999999999999763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d1nn5a_	209	c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapi	9e-39
d1tmka_	214	c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (S	2e-30
d4tmka_	210	c.37.1.1 (A:) Thymidylate kinase {Escherichia coli	2e-28
d1gsia_	208	c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tu	2e-24
d1p5zb_	241	c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sa	8e-21
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	8e-17
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	2e-14
d2ocpa1	241	c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (	1e-13
d2vp4a1	197	c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr	8e-11
d1osna_	331	c.37.1.1 (A:) Thymidine kinase {Varicella-zoster v	7e-10
d1p6xa_	333	c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus	1e-09
d1e2ka_	329	c.37.1.1 (A:) Thymidine kinase {Herpes simplex vir	1e-08
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	3e-06
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	2e-05
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	2e-05
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	3e-05
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	5e-05
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	6e-05
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	0.002
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	0.003

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 9e-39
 Identities = 94/208 (45%), Positives = 141/208 (67%), Gaps = 5/208 (2%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
           RGAL+VLEG+DR GK++Q  +L+  L   GH  EL RFP+R+T +G+++S+YL  +S ++
Sbjct: 2   RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 61

Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
           DH++HLLFSANRWE+  +++ KL  G TL+VDRY++SGVAF+ AK    ++WCK P++GL
Sbjct: 62  DHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGL 121

Query: 173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML---RDSSWKIIDACQSI 229
             PD VL+L +    AA+RG +G ERYE+  FQ +  +C+  L      +WK++DA +SI
Sbjct: 122 PKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSI 181

Query: 230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
           E V + ++ +  D +      KP   LW
Sbjct: 182 EAVHEDIRVLSEDAIATA-TEKPLGELW 208

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 214

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (277), Expect = 2e-30
 Identities = 82/216 (37%), Positives = 119/216 (55%), Gaps = 16/216 (7%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMI-SAYLSNQSHL 112
           RG L+++EGLDR GKT+QC+ L   L+       L +FP+R+T +G +I      +   L
Sbjct: 2   RGKLILIEGLDRTGKTTQCNILYKKLQPNCK---LLKFPERSTRIGGLINEYLTDDSFQL 58

Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGID---IEWCKAPE 169
            D  IHLLFSANRWE    ++  L  G  +++DRY YSGVA+S+AKG +   ++WC  P+
Sbjct: 59  SDQAIHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPD 118

Query: 170 IGLLAPDSVLYLDIPPEKAAER-GGYGGERYEHLEFQRKVAQCYQML-------RDSSWK 221
           +GLL PD  L+L            G+G ERYE ++FQ KV Q +  L        D S  
Sbjct: 119 VGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQTFMKLLDKEIRKGDESIT 178

Query: 222 IIDA-CQSIEDVEKQLKEIVLDQVTACKKGKPFSLL 256
           I+D   + I++VE  + +IV   ++       FS  
Sbjct: 179 IVDVTNKGIQEVEALIWQIVEPVLSTHIDHDKFSFF 214

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (262), Expect = 2e-28
 Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 16/207 (7%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLG-HSVELWRFPDRTTSVGQMISAYLSNQSHL 112
           R   +V+EGL+  GKT+  + ++  LE LG   +   R P  T    ++ S  L  +S  
Sbjct: 1   RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVG 60

Query: 113 DDHT-----IHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGI----DIE 163
           D+       + + ++A      ++++  L  GT +I DR+  S  A+           + 
Sbjct: 61  DEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLA 120

Query: 164 WCKAPEIGLLAPDSVLYLDIPPEKAAER----GGYGGERYEHLEFQRKVAQCYQML--RD 217
             +   +G   PD  LYLD+ PE   +R    G       E  +F  +    Y  L  +D
Sbjct: 121 TLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQD 180

Query: 218 SSWKIIDACQSIEDVEKQLKEIVLDQV 244
            S   IDA Q +E V   ++  V   V
Sbjct: 181 KSIHTIDATQPLEAVMDAIRTTVTHWV 207

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 94.7 bits (234), Expect = 2e-24
 Identities = 49/206 (23%), Positives = 78/206 (37%), Gaps = 26/206 (12%)

Query: 57  LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD--- 113
           L+ +EG+D  GK +   +L       G SV    FP    SV   I+A   +  H D   
Sbjct: 2   LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLAS 61

Query: 114 -DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK------GIDIEWCK 166
             + +  LF+ +R      ++   +    +I+DRY  S  A+S+A+      G    W +
Sbjct: 62  SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQ 121

Query: 167 APE---IGLLAPDSVLYLDIPPEKAAERGGYGGERYE---------HLEFQRKVAQCYQM 214
             E   +GL  PD  + L +  E A ER     +R             E Q++    Y  
Sbjct: 122 RIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAE 181

Query: 215 LRD----SSWKIIDACQSIEDVEKQL 236
           L        W ++ A      +   L
Sbjct: 182 LAAQGWGGRWLVVGADVDPGRLAATL 207

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 8e-21
 Identities = 35/236 (14%), Positives = 69/236 (29%), Gaps = 47/236 (19%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVG-------------- 99
           R   + +EG    GK++  + L    E      E         S                
Sbjct: 1   RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGG 60

Query: 100 --------QMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSG 151
                   +      + Q++     I    ++   + +   +  L    ++  DRY ++ 
Sbjct: 61  NVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFAS 120

Query: 152 VAFSSAKGIDIEWCKAPEIGLLA---------PDSVLYLDIPPEKAAERGGYGGERYEH- 201
             + S    + EW    +               D ++YL   PE    R    G   E  
Sbjct: 121 NLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQG 180

Query: 202 --LEFQRKVAQCYQ-------------MLRDSSWKIIDACQSIEDVEKQLKEIVLD 242
             LE+  K+   ++              L++     +D  +  +D  + L E V +
Sbjct: 181 IPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKE 236

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 74.3 bits (181), Expect = 8e-17
 Identities = 25/191 (13%), Positives = 57/191 (29%), Gaps = 7/191 (3%)

Query: 57  LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD--RTTSVGQMISAYLSNQSHLDD 114
           + ++ G+   GK++  +++   L+  G + ++  + D    T++    +        L  
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 115 HTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYS--GVAFSSAKGIDIEWCKAPEIGL 172
                L             A  +    +       +  G        +  E   +    L
Sbjct: 63  EKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLL 122

Query: 173 LAPDSVLYLDIPPEKAAERGGYGGE--RYEHLEFQRKVAQCYQMLRDSSWKIID-ACQSI 229
            A   ++      +    R  Y  E    E + F R  A    +L  S+ K+I       
Sbjct: 123 EADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDP 182

Query: 230 EDVEKQLKEIV 240
                ++   +
Sbjct: 183 SIAANEIIRSM 193

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 67.7 bits (164), Expect = 2e-14
 Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 11/191 (5%)

Query: 57  LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT 116
           +VV+ G+   G T+     +  L   G + ++  F      V   ++   +  S  D   
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS----VMFEVAKEENLVSDRDQMR 58

Query: 117 IHLLFSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIE----WCKAPEIG 171
                +  R +K      A++   + + VD +S          G+             I 
Sbjct: 59  KMDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIV 118

Query: 172 LLAPDSVLYLDIPPEKAAERGGYGGERYE-HLEFQRKVAQCYQMLRDSSWKIID-ACQSI 229
           +      + +    ++   R        E H    R  A  Y +L  ++ KI+      +
Sbjct: 119 VETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLL 178

Query: 230 EDVEKQLKEIV 240
           +   ++L  ++
Sbjct: 179 DQAVEELTNVL 189

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 1e-13
 Identities = 21/228 (9%), Positives = 56/228 (24%), Gaps = 44/228 (19%)

Query: 57  LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTT------SVGQMISAYLSNQS 110
            + +EG    GK++    L         + E               +        L +  
Sbjct: 4   RLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMM 63

Query: 111 HLDDH----TIHLLFSANRWE---KRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGID-- 161
           + +      T       +R +   +    +         I +R  YS     +    +  
Sbjct: 64  YREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENG 123

Query: 162 -------------IEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE---HLEFQ 205
                          +        +     +YL   P+   +R        E    L + 
Sbjct: 124 SLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYL 183

Query: 206 RKVAQCYQ-------------MLRDSSWKIIDACQSIEDVEKQLKEIV 240
            ++   ++              L +    ++D      +   + ++++
Sbjct: 184 EQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLM 231

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.7 bits (138), Expect = 8e-11
 Identities = 25/190 (13%), Positives = 60/190 (31%), Gaps = 17/190 (8%)

Query: 53  SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
           ++   V++EG    GKT+  +    Y   +    E          V  +   Y   +   
Sbjct: 7   TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWA 66

Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKG-------IDIEWC 165
                ++  +  +       +       ++   RY +      +          ++  + 
Sbjct: 67  MPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYK 126

Query: 166 KAPEIGLLAPDSVLYLDIPPEKAAER---GGYGGERYEHLEFQRKVAQCY-------QML 215
              E   +  D ++YL   PE A ER        E    L++ +++ + +       +  
Sbjct: 127 FIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRP 186

Query: 216 RDSSWKIIDA 225
           +     ++DA
Sbjct: 187 QSCKVLVLDA 196

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} Length = 331

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

 Score = 56.2 bits (135), Expect = 7e-10
 Identities = 22/200 (11%), Positives = 48/200 (24%), Gaps = 37/200 (18%)

Query: 58  VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD---RTTSVGQMISAYLSNQSHLD- 113
           + L+G    GKT+     L +     + + L   P    R  +    I      Q+    
Sbjct: 8   IYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTRRLN 67

Query: 114 -----------------------DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYS 150
                                        + +        +++   +    ++ DR+  +
Sbjct: 68  GDVSPEDAQRLTAHFQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIA 127

Query: 151 GV---AFSSAKGIDIEWCK-----APEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEH- 201
                  S     D+                   +++   +       R        E  
Sbjct: 128 STICFPLSRYLVGDMSPAALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKRARPGETV 187

Query: 202 -LEFQRKVAQCYQMLRDSSW 220
            L F   +   Y ML ++  
Sbjct: 188 NLPFVMVLRNVYIMLINTII 207

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

 Score = 55.0 bits (132), Expect = 1e-09
 Identities = 26/248 (10%), Positives = 66/248 (26%), Gaps = 49/248 (19%)

Query: 58  VVLEGLDRCGKTSQCSRLLSY-------------------------LEGLGHSVELWRFP 92
           + L+G+   GK++    + S                          + G+  +    +  
Sbjct: 9   IYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQG 68

Query: 93  DRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGV 152
           +       +I+A+   QS      + L          + ++   +   TL+ DR+  +  
Sbjct: 69  NLAVDDAALITAHY--QSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVAST 126

Query: 153 AFSSAKGIDIEWCKAPEI--------GLLAPDSVLYLDIPPEKAAERGGYGGERYEH--L 202
               A    +       +              +++   +  E+   R        E   +
Sbjct: 127 VCFPAARYLLGDMSMCALMAMVATLPREPQGGNIVVTTLNVEEHIRRLRTRARIGEQIDI 186

Query: 203 EFQRKVAQCYQMLRDSS------------WKIIDACQSIEDVEKQLKEIVLDQVTACKKG 250
                +   Y ML ++             W  +              +   ++V+     
Sbjct: 187 TLIATLRNVYFMLVNTCHFLRSGRVWRDGWGELPTSCGAYKHRATQMDAFQERVSPELGD 246

Query: 251 KPFSLLWS 258
             F+L  +
Sbjct: 247 TLFALFKT 254

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} Length = 329

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 20/195 (10%), Positives = 50/195 (25%), Gaps = 33/195 (16%)

Query: 54  RGALVVLEGLDRCGKTSQCSRLLSYLEG-----LGHSVELWRFPDRTTSVGQMISAYLSN 108
               V ++G    GKT+    L++         +   +  WR    + ++  + +     
Sbjct: 3   TLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRL 62

Query: 109 QSHLDDHTIHLLFSAN------------------RWEKRSMMEAKLKAGTTLIVDRYSYS 150
                      +   +                       +          TLI DR+  +
Sbjct: 63  DQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIA 122

Query: 151 GV---AFSSAKGIDIEWCKAPEI-----GLLAPDSVLYLDIPPEKAAERGGYGGERYEH- 201
            +     +      +               L   +++   +P ++  +R        E  
Sbjct: 123 ALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGERL 182

Query: 202 -LEFQRKVAQCYQML 215
            L     + + Y +L
Sbjct: 183 DLAMLAAIRRVYGLL 197

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 24/185 (12%), Positives = 58/185 (31%), Gaps = 14/185 (7%)

Query: 58  VVLEGLDRCGKTSQCSRLLSYLEGLGH---SVELWRFPDRTTSVGQMISAYLSNQSHLDD 114
           +VL GL   GK +Q  ++++   G+ H              T +G     Y+     + D
Sbjct: 3   LVLMGLPGAGKGTQAEKIVAAY-GIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPD 61

Query: 115 HTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLA 174
                +      +     +              + +     +  G  +++    ++    
Sbjct: 62  EVTIGIVRERLSKDD--CQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDV 119

Query: 175 PDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEK 234
               L  D      A R         +++  + +   Y+  +    + I+  Q +E V  
Sbjct: 120 LMERLTADDNEATVANR------LEVNMKQMKPLVDFYE--QKGYLRNINGEQDMEKVFA 171

Query: 235 QLKEI 239
            ++E+
Sbjct: 172 DIREL 176

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 33/193 (17%), Positives = 56/193 (29%), Gaps = 26/193 (13%)

Query: 58  VVLEGLDRCGKTSQCSRLLSYLEGLGH---SVELWRFPDRTTSVGQMISAYLSNQSHLDD 114
           V+L G    GK +Q  +L   L G+          R  +  T +G     YL     +  
Sbjct: 3   VLLLGPPGAGKGTQAVKLAEKL-GIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61

Query: 115 HTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLA 174
              + L                 A    I+D Y  S               +  E     
Sbjct: 62  DLTNELVDDRLNNP--------DAANGFILDGYPRS-------VEQAKALHEMLERRGTD 106

Query: 175 PDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRD-------SSWKIIDACQ 227
            D+VL   +  E   ER    G   +  +      + Y+              K +DA  
Sbjct: 107 IDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVG 166

Query: 228 SIEDVEKQLKEIV 240
           ++++V  +    +
Sbjct: 167 TMDEVFARALRAL 179

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 25/196 (12%), Positives = 62/196 (31%), Gaps = 33/196 (16%)

Query: 58  VVLEGLDRCGKTSQCSRLLSYLEGLGH--SVELWRFPDRT-TSVGQMISAYLSNQSHLDD 114
           ++L G    GK +Q   ++    G+    + ++ R   ++ + +G+     +     + D
Sbjct: 3   IILLGAPVAGKGTQAQFIMEKY-GIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61

Query: 115 HTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLA 174
             +  L      ++                                 I    A +   + 
Sbjct: 62  ELVIALVKERIAQE-------------------DCRNGFLLDGFPRTIPQADAMKEAGIN 102

Query: 175 PDSVLYLDIPPEKAAERGGYGGERY-------EHLEFQRKVAQCYQ---MLRDSSWKIID 224
            D VL  D+P E   +R     +         E+ +    +   Y       ++ +  +D
Sbjct: 103 VDYVLEFDVPDELIVDRIVKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVD 162

Query: 225 ACQSIEDVEKQLKEIV 240
             + + +V   L++I+
Sbjct: 163 GTKPVAEVRADLEKIL 178

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 31/187 (16%), Positives = 60/187 (32%), Gaps = 16/187 (8%)

Query: 58  VVLEGLDRCGKTSQCSRLLSYLEGLGH--SVELWRF-PDRTTSVGQMISAYLSN-QSHLD 113
           +VL GL   GK +Q  R++    G  H  + +++R      T +G    +++       D
Sbjct: 3   IVLMGLPGAGKGTQADRIVEKY-GTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPD 61

Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL 173
           + TI ++                           + +     +  G  IE     ++   
Sbjct: 62  EVTIGIVRERLSKSDCDN---GFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKE 118

Query: 174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVE 233
              + L  D  P+    R         ++     +   Y          I+  + I+DV 
Sbjct: 119 ELIARLTADDNPDTVTNR------LEVNMNQTAPLLAFYD--SKEVLVNINGQKDIKDVF 170

Query: 234 KQLKEIV 240
           K L  I+
Sbjct: 171 KDLDVIL 177

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 5e-05
 Identities = 35/199 (17%), Positives = 65/199 (32%), Gaps = 28/199 (14%)

Query: 58  VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTI 117
           V + G    GK +QC+R++    G  H            S G+++     N        I
Sbjct: 4   VFVLGGPGAGKGTQCARIVEKY-GYTH-----------LSAGELLRDERKNPDSQYGELI 51

Query: 118 HLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL---LA 174
                  +     +  + LK      +   +            + +  +     +     
Sbjct: 52  EKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKAD 111

Query: 175 PDSVLYLDIPP----EKAAERGGYGGERYEHLEFQRKVAQCY----QMLRD-----SSWK 221
              VL+ D       E+  ERG   G   ++ E   K  Q Y    + + D        K
Sbjct: 112 VSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVK 171

Query: 222 IIDACQSIEDVEKQLKEIV 240
            IDA +S+++V  ++ +I 
Sbjct: 172 KIDASKSVDEVFDEVVQIF 190

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (93), Expect = 6e-05
 Identities = 24/186 (12%), Positives = 45/186 (24%), Gaps = 18/186 (9%)

Query: 58  VVLEGLDRCGKTSQCSRLLSYLEGLGH---SVELWRFPDRTTSVGQMISAYLSNQSHLDD 114
           +VL G    GK +Q   L        H      L     + T +G      +     + D
Sbjct: 5   MVLIGPPGAGKGTQAPNLQERF-HAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 63

Query: 115 HTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLA 174
             +  +         +     +  G    + +                +  K     L  
Sbjct: 64  DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEK-----------LDQMLKEQGTPLEK 112

Query: 175 PDSVLYLDIPPEKAAERGGYGGERYEHLEFQRK-VAQCYQMLRDSSWKIIDACQSIEDVE 233
              +   D              +R      Q + +   Y+  +   W  +DA Q    V 
Sbjct: 113 AIELKVDDELLVARITNADALKKRLAAYHAQTEPIVDFYK--KTGIWAGVDASQPPATVW 170

Query: 234 KQLKEI 239
             +   
Sbjct: 171 ADILNK 176

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 23/183 (12%), Positives = 50/183 (27%), Gaps = 14/183 (7%)

Query: 58  VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTI 117
           V + G +  GK+   ++L +             F        +                 
Sbjct: 10  VAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDE------------QAMQY 57

Query: 118 HLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDS 177
                     +R +  A   +     +D    +  AF               I     D 
Sbjct: 58  SDYPQMALGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDV 117

Query: 178 VLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLK 237
            + L    E   +     G + +  +FQ+ + +     +   +  I++  S  D   Q+K
Sbjct: 118 TILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKV-PYIEIES-PSYLDRYNQVK 175

Query: 238 EIV 240
            ++
Sbjct: 176 AVI 178

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 27/202 (13%), Positives = 66/202 (32%), Gaps = 35/202 (17%)

Query: 58  VVLEGLDRCGKTSQCSRLLSYLEGLGH----SVELWRFPDRTTSVGQMISAYLSNQSHLD 113
           + + G    GK +QC +L+       H     +         +  G++I   +     + 
Sbjct: 11  IFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVP 69

Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL 173
                         + ++ +         ++D +              ++   + E  ++
Sbjct: 70  QEITL------ALLRNAISDNVKANKHKFLIDGFPR-----------KMDQAISFERDIV 112

Query: 174 APDSVLYLDIPPEKAAER----GGYGGERYEHLEFQRKVAQCYQMLRD---------SSW 220
               +L+ D P +   ER    G   G   +++E  +K    ++             S  
Sbjct: 113 ESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKV 172

Query: 221 KIIDACQSIEDVEKQLKEIVLD 242
             +   +S+EDV K +++ + D
Sbjct: 173 VRVRCDRSVEDVYKDVQDAIRD 194

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	100.0
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	100.0
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	100.0
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.97
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	99.9
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	99.84
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.78
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.77
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.77
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.77
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.77
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.76
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	99.75
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.75
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	99.75
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	99.73
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.72
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.72
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.71
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.71
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.7
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	99.69
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.67
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.66
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.65
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.6
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.57
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.55
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.45
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.45
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.39
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	99.38
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.37
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.35
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.32
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.3
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.2
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.2
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.19
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.15
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.15
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	99.13
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.11
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.07
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.05
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.02
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.01
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.89
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.88
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.87
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.85
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.79
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.74
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.33
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.29
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.07
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.03
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.76
d1okkd2	207	GTPase domain of the signal recognition particle r	97.72
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.66
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.58
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.57
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.57
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.45
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	97.43
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.39
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.37
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.37
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.33
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.33
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.24
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.19
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.08
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.07
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.04
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.93
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.88
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.87
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.7
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.69
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.68
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	96.67
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.67
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.64
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.64
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.63
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.61
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.61
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.6
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.59
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.56
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.55
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.53
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.53
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.52
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.52
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.5
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.49
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.49
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.43
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	96.43
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.41
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.4
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.37
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.37
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.32
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.31
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.26
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.23
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.15
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.14
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	96.14
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.12
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.09
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.07
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.03
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.0
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.91
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.89
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.88
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.84
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.82
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.81
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.79
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.77
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.76
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.71
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.7
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	95.69
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.65
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.62
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.54
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.53
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.52
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.52
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.48
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.47
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.45
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.43
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.42
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.34
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.34
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.28
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.28
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.24
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.23
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.16
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.14
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.12
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.05
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.04
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.04
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.03
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.03
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	95.02
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.93
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.91
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.89
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.89
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	94.89
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	94.87
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	94.86
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.85
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.83
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.83
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.82
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	94.82
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.82
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	94.81
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.76
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.76
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.74
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.72
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.71
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.68
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.67
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	94.66
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.65
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	94.62
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.58
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	94.54
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.53
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.51
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.51
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.49
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.48
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	94.46
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	94.44
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.43
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.38
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.36
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	94.36
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.36
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.31
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.3
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.29
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.25
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.17
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.14
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.12
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.06
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.02
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	93.99
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	93.98
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	93.98
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	93.94
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	93.94
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.93
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.92
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	93.91
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	93.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.83
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.79
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	93.78
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.74
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.72
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.61
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.46
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.42
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.36
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.36
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.35
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.34
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.34
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.33
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	93.29
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	93.26
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.24
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	93.09
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.78
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	92.54
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.52
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	92.42
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.35
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	92.22
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.16
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	92.07
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.0
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.63
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.32
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.32
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	90.53
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	90.48
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	90.33
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.39
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.91
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	88.88
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	88.76
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	88.75
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.38
d1xpua3	289	Transcription termination factor Rho, ATPase domai	88.26
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	88.09
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	88.06
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	87.93
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	87.75
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	87.7
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	87.6
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	87.11
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	87.09
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	86.58
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	86.49
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	85.96
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	85.26
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	85.15
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	85.05
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	84.78
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	84.26
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	84.05
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	83.51
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	83.29
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	82.87
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	82.79
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	82.66
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	82.23
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	81.45
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	80.99
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	80.13

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-41  Score=284.48  Aligned_cols=205  Identities=45%  Similarity=0.916  Sum_probs=182.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      .||++|+|||+||||||||++.|+++|...|++++.+++|..+++.++.+++++.....+++....++|+++|+++...+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~~~~i   80 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI   80 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHHHHhH
Confidence            47999999999999999999999999999999999999998888999999999887777888888899999998877788


Q ss_pred             HHHHhcCCeEEEcccccchhhhhcC-CCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC  211 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~  211 (259)
                      ++++.+|.+||+|||++|+++|+.. .+.+..|+..++..++.||++||||+||+++.+|+..+++++|+.+|++++.+.
T Consensus        81 ~~~l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~~~~E~~~~~~r~~~~  160 (209)
T d1nn5a_          81 KEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRC  160 (209)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCSHHHHHHHHHH
T ss_pred             HHHhhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhcccccccccHHHHHHHHHH
Confidence            9999999999999999999999875 567788999888889999999999999999999998877889989999999999


Q ss_pred             HHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC
Q 025041          212 YQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWS  258 (259)
Q Consensus       212 y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~~~~~~~~~  258 (259)
                      |.++..   .+|++||+++|+|+|.++|.+++.+.+...+ ++|++.||.
T Consensus       161 Y~~l~~~~~~~~~~IDa~~~~e~V~~~I~~~v~~~l~~~~-~~~~~~~~~  209 (209)
T d1nn5a_         161 FHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATAT-EKPLGELWK  209 (209)
T ss_dssp             HHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHHGG-GSCCCBTTC
T ss_pred             HHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHHhcc-cCchhhhcC
Confidence            999864   3699999999999999999999999999555 556699994

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-35  Score=247.94  Aligned_cols=199  Identities=42%  Similarity=0.747  Sum_probs=160.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC-CCCCHHHHHHHHHHhHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ-SHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~-~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      .||++|+|||+||||||||++.|+++|...+   ..+.+|..++++|+.|++++.+. ..+++.+..++|+++|+++...
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~~~---~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~~   77 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKLQPNC---KLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDK   77 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHTTTSE---EEEESSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHHH
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHHHhCC---EEEEECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHHH
Confidence            3899999999999999999999999997644   45677877889999999988654 3678888999999999988777


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCC---CHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC-CCcchHHHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGI---DIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG-ERYEHLEFQRK  207 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl---~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~-d~~e~~~~~~r  207 (259)
                      +.+.+..|.+||+|||++|+++|+.+++.   +..|+..+....+.||++||||+||++..+|...++ +.+|..+|+++
T Consensus        78 i~~~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~~~~e~~~~~~~  157 (214)
T d1tmka_          78 IKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEK  157 (214)
T ss_dssp             HHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCSSTTCCHHHHHH
T ss_pred             HHHHHhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccchhhhhhHHHHHH
Confidence            88999999999999999999999986543   467887777788999999999999999988876554 45788899999


Q ss_pred             HHHHHHhhh-------CCCeEEEcC-CCCHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 025041          208 VAQCYQMLR-------DSSWKIIDA-CQSIEDVEKQLKEIVLDQVTACKKGKPFS  254 (259)
Q Consensus       208 v~~~y~~l~-------~~~~~vIDa-~~s~eev~~~I~~~i~~~l~~~~~~~~~~  254 (259)
                      +++.|.++.       +.++++||+ +.++|+|.++|.+.|.+.|........++
T Consensus       158 v~~~Y~~l~~~~~~~~~~~~~iID~s~~~~eev~~~I~~~v~~~l~~~~~~~~~~  212 (214)
T d1tmka_         158 VKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLSTHIDHDKFS  212 (214)
T ss_dssp             HHHHHHHHHHHHHHTTCTTEEEEECTTCCHHHHHHHHHHHHHHHHHSCCCTTCCC
T ss_pred             HHHHHHHHHHHhhhhCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHhhcCccccc
Confidence            999998764       247999997 47999999999999999998877655443

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.4e-35  Score=245.14  Aligned_cols=192  Identities=30%  Similarity=0.430  Sum_probs=161.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE-EEEecCCCCChHHHHHHHHHhCC-----CCCCHHHHHHHHHHhHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV-ELWRFPDRTTSVGQMISAYLSNQ-----SHLDDHTIHLLFSANRWE  127 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v-~~~~~p~~~~~~g~~ir~~l~~~-----~~~~~~~~~ll~~a~r~~  127 (259)
                      ||++|+|||+||||||||++.|+++|...|+.. +..++|. +++.|+.+++.+...     ..+++....++|++++..
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~-~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   79 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG-GTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQ   79 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC-SSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCC-CccchhhhHHHHhccccccccccchHHHHHHHHHHHHH
Confidence            689999999999999999999999999999864 5567886 788999999887643     246777888888888877


Q ss_pred             HH-HHHHHHHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC--CCc-
Q 025041          128 KR-SMMEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG--ERY-  199 (259)
Q Consensus       128 ~~-~~i~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~--d~~-  199 (259)
                      +. ..+++++.+|.+||+|||++|.++|+. ..+.+.+|+..+.   ...+.||++||||+||+++.+|+..|+  +++ 
T Consensus        80 ~~~~~i~~~l~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R~~~~~~~  159 (210)
T d4tmka_          80 LVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIE  159 (210)
T ss_dssp             HHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCTTT
T ss_pred             HHHHHHHHHHHcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhccccchhh
Confidence            65 667899999999999999999999987 4577777776654   246889999999999999999997654  333 


Q ss_pred             -chHHHHHHHHHHHHhhhC--CCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 025041          200 -EHLEFQRKVAQCYQMLRD--SSWKIIDACQSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       200 -e~~~~~~rv~~~y~~l~~--~~~~vIDa~~s~eev~~~I~~~i~~~l~~  246 (259)
                       +..+|++++.+.|.++..  ++|++||+++|+|+|.++|.+.|.+.+++
T Consensus       160 ~~~~~~~~~v~~~y~~~~~~~~~~~~IDa~~~~e~v~~~I~~~i~~~l~~  209 (210)
T d4tmka_         160 QESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKE  209 (210)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTCTTEEEEETTSCHHHHHHHHHHHHHHHHHT
T ss_pred             hccHHHHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence             358999999999998753  57999999999999999999999998874

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1.2e-30  Score=216.94  Aligned_cols=181  Identities=27%  Similarity=0.416  Sum_probs=141.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCC----CCHHHHHHHHHHhHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSH----LDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~----~~~~~~~ll~~a~r~~~~~~  131 (259)
                      ++|+|+|+||||||||++.|+++|..+|++|+.+++|..+++.+..++..+..+..    ..+.....+|.+.++.....
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~   80 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHT   80 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTTCHHHHHHHHHHTTCSTTGGGCHHHHHHHHHHHHHTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCCccchhhhhhhccccccccccchHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999999998788888777665543321    23344455565655544455


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCC------CCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC------
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAK------GIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG------  196 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~------gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~------  196 (259)
                      +.+....|++||+|||+++..+|+...      +...+|+..++   ...+.||++|||++||+++.+|+..|+      
T Consensus        81 ~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~e~~~~Ri~~R~~~~~~~  160 (208)
T d1gsia_          81 IQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGR  160 (208)
T ss_dssp             HHHHHHHSSEEEEESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCSEEEEECCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHhhhcccccccchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCceeEEecccHHHHHHHHHhhhcccccc
Confidence            667778899999999999999987631      22234554443   456899999999999999999987542      


Q ss_pred             --CCcc-hHHHHHHHHHHHHhhhC----CCeEEEcCCCCHHHHHHHH
Q 025041          197 --ERYE-HLEFQRKVAQCYQMLRD----SSWKIIDACQSIEDVEKQL  236 (259)
Q Consensus       197 --d~~e-~~~~~~rv~~~y~~l~~----~~~~vIDa~~s~eev~~~I  236 (259)
                        +++| ..+|++++.+.|.++..    .+|++||+++++|+|.++|
T Consensus       161 ~~d~~e~~~~y~~~~~~~Y~~~~~~~~~~~~~vIDa~~~~e~V~~~i  207 (208)
T d1gsia_         161 ARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATL  207 (208)
T ss_dssp             CCCTTTTCHHHHHHHHHHHHHHHHHTTTSEEEEECTTCCHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHhh
Confidence              3455 37999999999998742    3599999999999999987

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.6e-26  Score=192.59  Aligned_cols=193  Identities=19%  Similarity=0.167  Sum_probs=116.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCH-------------HHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDD-------------HTIHLL  120 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~-------------~~~~ll  120 (259)
                      |+++|+|+|++|||||||++.|+++|...++.++.+..|......+..++..........+             ...+.+
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~d~~~~~~~~q~~   80 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTY   80 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEECCCHHHHTSCCCC------------CCCCHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHhcCCCeeeeeeecCCCchHHHHHHHHhhccccCCchHHHHHhhhhhcccchhhh
Confidence            5789999999999999999999999976544332222222111111111111111100000             111222


Q ss_pred             HHHhHHHHH-HHH--------HHHHhcCCeEEEcccccchhhhhcCCCCCHH---------HHHhhhccCCCCCEEEEEe
Q 025041          121 FSANRWEKR-SMM--------EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIE---------WCKAPEIGLLAPDSVLYLD  182 (259)
Q Consensus       121 ~~a~r~~~~-~~i--------~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~---------~~~~~~~~~~~PdlvI~Ld  182 (259)
                      +...|+... ...        .+.+..+.+|++|||+++..+|+...+...+         |........+.||++|||+
T Consensus        81 ~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pdl~i~Ld  160 (241)
T d1p5zb_          81 ACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQ  160 (241)
T ss_dssp             HHHHHHHHHHHHHTSGGGGSSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhhcCCeEEEeccccHHHHHHHhcccchhHHHHHHHHHHHHhhcccCCCCceeeeec
Confidence            222332221 100        1112234566677777777777754433221         2222223447899999999


Q ss_pred             CCHHHHHhhcCCCCCCcc---hHHHHHHHHHHHHhhh-------------CCCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 025041          183 IPPEKAAERGGYGGERYE---HLEFQRKVAQCYQMLR-------------DSSWKIIDACQSIEDVEKQLKEIVLDQVTA  246 (259)
Q Consensus       183 ~~~e~~~~R~~~R~d~~e---~~~~~~rv~~~y~~l~-------------~~~~~vIDa~~s~eev~~~I~~~i~~~l~~  246 (259)
                      +||+++.+|+..|+...|   +.+|++++.+.|+++.             +.++++||+++++|++.++|.+.|.+++..
T Consensus       161 ~~pe~~~~Ri~~r~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID~~~~ie~v~~~i~~~i~~~l~~  240 (241)
T d1p5zb_         161 ATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLST  240 (241)
T ss_dssp             CCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHhhcchhhhcCCHHHHHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence            999999999976655443   4799999999998752             137899999999999999999999988763

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8.6e-22  Score=166.61  Aligned_cols=190  Identities=15%  Similarity=0.106  Sum_probs=113.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC------CCChHHHHHH-----HHHhCCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD------RTTSVGQMIS-----AYLSNQSHLDDHTIHLLFSA  123 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~------~~~~~g~~ir-----~~l~~~~~~~~~~~~ll~~a  123 (259)
                      |++|+|||++|||||||++.|+++|...++....+..+.      ..+..++.++     .++.++.. .....++++.+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i~~epv~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~-~~~~~q~~~~~   80 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMMYREPAR-WSYTFQTFSFL   80 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEEECCCGGGTSCCC------------CCCHHHHHHHSHHH-HHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcCCcccccCccceeecCCCCchHHHHHHHHHhhhhhccchh-hhhHHHHHHHH
Confidence            689999999999999999999999976543211111110      1112222221     11121111 11234455556


Q ss_pred             hHHHHH-HHH-HHHH-hcCCeEEEcccccchhhhhcC----CCC--CH------HHHHhhh---ccCCCCCEEEEEeCCH
Q 025041          124 NRWEKR-SMM-EAKL-KAGTTLIVDRYSYSGVAFSSA----KGI--DI------EWCKAPE---IGLLAPDSVLYLDIPP  185 (259)
Q Consensus       124 ~r~~~~-~~i-~~~l-~~g~~VI~DR~~~s~~ay~~~----~gl--~~------~~~~~~~---~~~~~PdlvI~Ld~~~  185 (259)
                      .|..+. +.+ .+.+ ..+..||+||++++..++...    .|.  +.      +|.....   ...+.||++|||++||
T Consensus        81 ~r~~~~~~~~~~~~~~~~~~~vi~dr~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~pdl~i~Ld~~~  160 (241)
T d2ocpa1          81 SRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASP  160 (241)
T ss_dssp             HHHHHHHSCCCHHHHSCSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSHHHHCCCEEEEEECCH
T ss_pred             HHHHHHHHHHHHHhhhccchhhhhcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHhhhhccccccceEEEecCCH
Confidence            665542 111 2223 235799999999987665321    221  11      1222111   2346899999999999


Q ss_pred             HHHHhhcCCCCCCcc---hHHHHHHHHHHHHhhhC-------------CCeEEEcCCCCHHHH---HHHHHHHHHHHHh
Q 025041          186 EKAAERGGYGGERYE---HLEFQRKVAQCYQMLRD-------------SSWKIIDACQSIEDV---EKQLKEIVLDQVT  245 (259)
Q Consensus       186 e~~~~R~~~R~d~~e---~~~~~~rv~~~y~~l~~-------------~~~~vIDa~~s~eev---~~~I~~~i~~~l~  245 (259)
                      +++.+|+..|+...|   +.+|++++.+.|+++..             .++++||++.+.+++   .++|.+.|..++.
T Consensus       161 ~~~~~Ri~~r~r~~E~~i~~~yl~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~iID~~~d~~~~~~~~~~i~~~I~~~i~  239 (241)
T d2ocpa1         161 QVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREVNTFVK  239 (241)
T ss_dssp             HHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccchhhhcCCHHHHHHHHHHHHHHHHhhhhhhhHhhcCCCCEEEEECCCchhhhHHHHHHHHHHHHHHHh
Confidence            999999987765544   47999999999987521             368999998775554   4445555555554

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.78  E-value=9e-19  Score=142.95  Aligned_cols=174  Identities=18%  Similarity=0.248  Sum_probs=101.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEecC-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWRFP-DRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~~p-~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      +|+.|+|.|||||||||+|+.|+++++...+++. .++.. .........+.+++..+......... ......     .
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~-----~   75 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVV-NMVKER-----L   75 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHH-HHHHHH-----H
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeeh-hhhhhH-----h
Confidence            6788999999999999999999999953211100 00000 00111222233333332222221110 000000     1


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC  211 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~  211 (259)
                      ..+... ++.+|+|+++.+.           ++...+......||++|||++|++++.+|+..++.. +  .+.+++...
T Consensus        76 ~~~~~~-~~~~vid~~~~~~-----------~q~~~l~~~~~~p~~~i~L~~~~e~l~~R~~~~~~~-e--~~~~rl~~y  140 (189)
T d1zaka1          76 RQPDAQ-ENGWLLDGYPRSY-----------SQAMALETLEIRPDTFILLDVPDELLVERVVFDDTE-E--KVKLRLETY  140 (189)
T ss_dssp             HSHHHH-HTCEEEESCCCSH-----------HHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTTCCT-T--HHHHHHHHH
T ss_pred             hhcccc-cCcEEeeccchhh-----------HHHhhhhhcccccchheeechhhhhhhhhccccchH-H--HHHHHHHHH
Confidence            111111 2346778876532           334444455678999999999999999999765322 2  233344332


Q ss_pred             HHh---h---hCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhh
Q 025041          212 YQM---L---RDSSWKIIDACQSIEDVEKQLKEIVLDQVTACK  248 (259)
Q Consensus       212 y~~---l---~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~  248 (259)
                      +++   +   .+..+++||+++++++|+++|.+.|...+....
T Consensus       141 ~~~~~~l~~~y~~~~~~Id~~~~idev~~~I~~~l~~il~~~~  183 (189)
T d1zaka1         141 YQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKN  183 (189)
T ss_dssp             HHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHHHhhhhh
Confidence            222   1   135789999999999999999999999887654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.77  E-value=1.9e-18  Score=138.63  Aligned_cols=169  Identities=15%  Similarity=0.198  Sum_probs=100.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC--------CCCHHHHHHHHHHhHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS--------HLDDHTIHLLFSANRWE  127 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~--------~~~~~~~~ll~~a~r~~  127 (259)
                      ++|+|+|+|||||||+++.|+++|+..|.++..+.+       ++..+.......        .........    ....
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~   70 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF-------GSVMFEVAKEENLVSDRDQMRKMDPETQK----RIQK   70 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH-------HHHHHHHHHHTTSCSSGGGGSSCCHHHHH----HHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEec-------CChhHHHHHHHHhhhhhhhhhhhhchhhH----HHHH
Confidence            799999999999999999999999998888766553       222222221110        011111110    1111


Q ss_pred             HHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC---cch---
Q 025041          128 KRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER---YEH---  201 (259)
Q Consensus       128 ~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~---~e~---  201 (259)
                      ......+.+..+.++++|+++.+...+....+....+     ...+.|+++|||+++|+++.+|+..+..+   .+.   
T Consensus        71 ~~~~~~~~~~~~~~vl~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~l~~~~~~~~~R~~~~~~~~~~~~~~~~  145 (190)
T d1khta_          71 MAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWV-----LNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTAST  145 (190)
T ss_dssp             HHHHHHHHHHTTSCEEEECCSEEEETTEEEESSCHHH-----HHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHH
T ss_pred             HHHHHHHHHhCCCeEEECCcccchHHHHHHHhhhhhh-----hhhccccceeeecCCHHHHHHHHHHhccccCCcccHHH
Confidence            1111223456788999999987654443222222222     12357999999999999999887643221   111   


Q ss_pred             HHHHHHH----HHHHHhhhCCCe-EEEcCCCCHHHHHHHHHHHH
Q 025041          202 LEFQRKV----AQCYQMLRDSSW-KIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       202 ~~~~~rv----~~~y~~l~~~~~-~vIDa~~s~eev~~~I~~~i  240 (259)
                      .++++..    ...|....+..+ +++|++.++|+++++|.+.|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~l  189 (190)
T d1khta_         146 IEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL  189 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCeEEEECCCCCHHHHHHHHHHHh
Confidence            2233333    233333334444 45567899999999999876

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=8.8e-19  Score=141.71  Aligned_cols=163  Identities=15%  Similarity=0.226  Sum_probs=97.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      |.|+|.|||||||||||+.|+++++   +..+..    +. ...+++.++.+++++..+..........+ ...+..   
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~---~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~-~~~~~~---   73 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYG---IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIAL-VKERIA---   73 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHH-HHHHHT---
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC---CceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHH-HHHhhc---
Confidence            4689999999999999999999994   333321    10 00122334444555554432322211111 111100   


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--cch--HHHHH
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--YEH--LEFQR  206 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~e~--~~~~~  206 (259)
                        ....  .+.+|.|+++.+.           .+...+......||++|||++|++++.+|+..|++.  ...  ..|.+
T Consensus        74 --~~~~--~~g~i~~g~pr~~-----------~~~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~~~~e~i~~r~~~y~~  138 (179)
T d1e4va1          74 --QEDC--RNGFLLDGFPRTI-----------PQADAMKEAGINVDYVLEFDVPDELIVDRIVKDDQEETVRKRLVEYHQ  138 (179)
T ss_dssp             --SGGG--GGCEEEESCCCSH-----------HHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred             --cccc--ccceeecccccch-----------HHhhhhhhccCCceEEEEeccchhhhhhhhcccccHHHHHHHHHHHHH
Confidence              0111  2347888888643           223333345578999999999999999998876431  000  12333


Q ss_pred             H---HHHHHHhhh---CCCeEEEcCCCCHHHHHHHHHHHH
Q 025041          207 K---VAQCYQMLR---DSSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       207 r---v~~~y~~l~---~~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                      .   +...|.+..   ...++.||+++++|+|+++|.++|
T Consensus       139 ~~~~v~~~y~~~~~~~~~~~~~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         139 MTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             HTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCcEEEEECCCCHHHHHHHHHHHh
Confidence            2   455665533   246899999999999999999875

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=1.3e-18  Score=140.88  Aligned_cols=168  Identities=19%  Similarity=0.134  Sum_probs=102.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE-----ecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW-----RFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~-----~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      +.|+|.|||||||||||+.|+++|+   +..+..     .+....++.|..++.++..+..+......-+.. .      
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g---~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~-~------   70 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLG---IPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVD-D------   70 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHH-H------
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC---CceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHH-H------
Confidence            4699999999999999999999994   443321     112223455666777666554444322111100 0      


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcch-HHHHHHHH
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEH-LEFQRKVA  209 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~-~~~~~rv~  209 (259)
                      .+. .......+|.|+|+....-.       ..+..........|+++++|+++++++.+|+..|....+. ..+.+++.
T Consensus        71 ~~~-~~~~~~~~i~d~~p~~~~~~-------~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r~~~~~~~i~~rl~  142 (181)
T d2cdna1          71 RLN-NPDAANGFILDGYPRSVEQA-------KALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMK  142 (181)
T ss_dssp             HTT-SGGGTTCEEEESCCCSHHHH-------HHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHH
T ss_pred             Hhh-CccccccEEecccccchhHH-------HHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccccccchhHHHHHHHH
Confidence            000 01224568889988643211       0222223345568999999999999999999755322222 23444544


Q ss_pred             HHHHh---h---hCCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          210 QCYQM---L---RDSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       210 ~~y~~---l---~~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      .++..   +   ....+++||+++++|+|+++|.++|.
T Consensus       143 ~y~~~~~~l~~~y~~~~~~Id~~~s~eeV~~~I~~~l~  180 (181)
T d2cdna1         143 VYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRALG  180 (181)
T ss_dssp             HHHHHTTTHHHHTTTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCeEEEECCCCHHHHHHHHHHHhC
Confidence            33322   1   12478999999999999999998763

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.77  E-value=5.3e-18  Score=136.57  Aligned_cols=175  Identities=14%  Similarity=0.160  Sum_probs=98.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC----CCCCHHHHHHHHHHhHHHHH-H
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ----SHLDDHTIHLLFSANRWEKR-S  130 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~----~~~~~~~~~ll~~a~r~~~~-~  130 (259)
                      ++|+|+|+|||||||+++.|+++|...|+++..+++++  ...+...+..+...    ..... ....++.+.+.... .
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   78 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD--FMLATALKLGYAKDRDEMRKLSV-EKQKKLQIDAAKGIAE   78 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH--HHHHHHHTTTSCSSHHHHTTSCH-HHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCC--cchHHHHHHHhhhhhhhccccch-hhcccCHHHHHHHHHH
Confidence            58999999999999999999999999999887766532  11122221111110    01111 22222333332222 2


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC------cch---
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER------YEH---  201 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~------~e~---  201 (259)
                      .+..  ...+.++.|++.+....+....+.+.....     .+.||++|||++|++++.+|+..|..+      .+.   
T Consensus        79 ~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~l~~~~~~~~~R~~~r~~~~r~~~~~~~~~~  151 (194)
T d1nksa_          79 EARA--GGEGYLFIDTHAVIRTPSGYLPGLPSYVIT-----EINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVIL  151 (194)
T ss_dssp             HHHH--TCSSEEEEEECSEEEETTEEEESSCHHHHH-----HHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHH
T ss_pred             HHHH--hCCCcEEEEccCchHHHHHHHHhHHHHHHh-----hhccccceEEecCHHHHHHHHHHhhhcccccchHHHHHH
Confidence            2221  335667777665543322222333333222     346999999999999999998643221      111   


Q ss_pred             --HHHHHHHHHHHHhhhCCCeEEEc-CCCCHHHHHHHHHHHH
Q 025041          202 --LEFQRKVAQCYQMLRDSSWKIID-ACQSIEDVEKQLKEIV  240 (259)
Q Consensus       202 --~~~~~rv~~~y~~l~~~~~~vID-a~~s~eev~~~I~~~i  240 (259)
                        .++.+.....+....+.++.+|+ +++++||++++|.+.|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~i  193 (194)
T d1nksa_         152 ETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHh
Confidence              11111111222222234555555 6799999999999876

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.76  E-value=8.7e-18  Score=137.33  Aligned_cols=170  Identities=18%  Similarity=0.283  Sum_probs=97.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-----cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-----FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW  126 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-----~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~  126 (259)
                      .++|.+|+|.||+||||||+|+.|+++|   |+..+...     +.......+..++.++..+....... .......  
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~---g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--   76 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDF---GWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIV-TVKLLKN--   76 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHH---CCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHH-HHHHHHH--
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHH---CCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHH-HHHHHHH--
Confidence            4688999999999999999999999998   44333210     00001122333333333222111111 0000000  


Q ss_pred             HHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC---Cc-chH
Q 025041          127 EKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE---RY-EHL  202 (259)
Q Consensus       127 ~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d---~~-e~~  202 (259)
                          ...  ......+|.|+++.+.--        ...+.........|+++|||++|++++.+|+..|+.   +. +..
T Consensus        77 ----~~~--~~~~~~~i~dg~p~~~~~--------~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d~~  142 (194)
T d1qf9a_          77 ----AID--ANQGKNFLVDGFPRNEEN--------NNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNI  142 (194)
T ss_dssp             ----HHH--TSTTCCEEEETCCCSHHH--------HHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSH
T ss_pred             ----Hhh--hhhcCCeEEEecchhhhh--------HHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccccccccH
Confidence                111  112345788998865321        122333334567899999999999999999854321   11 122


Q ss_pred             -HHHHHHHHHHHh-h--------hCCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          203 -EFQRKVAQCYQM-L--------RDSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       203 -~~~~rv~~~y~~-l--------~~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                       .+.+|+. .|.+ .        ....+++||+++++++|+++|.+.|..
T Consensus       143 e~~~~Rl~-~y~~~~~~~~~~y~~~~~~~~Id~~~~ieeV~~~I~~ii~~  191 (194)
T d1qf9a_         143 ESIKKRFN-TFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHHHHHHH-HHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence             2334433 3322 1        124789999999999999999988764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=99.75  E-value=5.3e-18  Score=150.48  Aligned_cols=162  Identities=15%  Similarity=0.089  Sum_probs=99.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC------CCChHHHHHHHHHhC--CCCCCH-HHHHH------
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD------RTTSVGQMISAYLSN--QSHLDD-HTIHL------  119 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~------~~~~~g~~ir~~l~~--~~~~~~-~~~~l------  119 (259)
                      ...|+|||++||||||+++.|++.+...|..+..+.||.      .++.+.+.+.+-...  .+.... .....      
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~EP~~~W~~~~g~~~l~~iy~~~~r~~~g~~~~~~~~~~~~~~Q~   84 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTRRLNGDVSPEDAQRLTAHFQS   84 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCCHHHHTTBTTBCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeCchHhhhccCCCcHHHHHHHhHHhccccccchhhHHHHHHHHHH
Confidence            356999999999999999999999998888899899981      244444444332211  122222 11111      


Q ss_pred             HHHHhHHHHHHHHHHH------------HhcCCeEEEcccccchh-hhhcC---CC-CCHHHHHhhh---ccCCCCCEEE
Q 025041          120 LFSANRWEKRSMMEAK------------LKAGTTLIVDRYSYSGV-AFSSA---KG-IDIEWCKAPE---IGLLAPDSVL  179 (259)
Q Consensus       120 l~~a~r~~~~~~i~~~------------l~~g~~VI~DR~~~s~~-ay~~~---~g-l~~~~~~~~~---~~~~~PdlvI  179 (259)
                      .|+..+......+.+.            ...+.+||+|||++++. .|...   .| ++...+..+.   ...+.||++|
T Consensus        85 ~f~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~VI~DR~~~Ss~~~F~~~~~~~G~i~~~~~~~l~~~~~~~~~pdliI  164 (331)
T d1osna_          85 LFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMSPAALPGLLFTLPAEPPGTNLV  164 (331)
T ss_dssp             HTHHHHHHHHHHHHHTSCCCCSCCSCCCSSCCEEEEEESCTHHHHTHHHHHHHHHTSSCGGGHHHHHTTCCCCCSCCEEE
T ss_pred             HHhhhHHHHHHHHHHHHhhhhhcccccccCCCCEEEEECCHhHHHHHHHHHhhhcCCCCHHHHHHHHHHhcccCCCCEEE
Confidence            1111111111222222            12256899999999864 33221   23 3333333332   3346799999


Q ss_pred             EEeCCHHHHHhhcCCCCCCcc--hHHHHHHHHHHHHhhh
Q 025041          180 YLDIPPEKAAERGGYGGERYE--HLEFQRKVAQCYQMLR  216 (259)
Q Consensus       180 ~Ld~~~e~~~~R~~~R~d~~e--~~~~~~rv~~~y~~l~  216 (259)
                      ||++||+++.+|+.+|+...|  +.+|+++++..|..+.
T Consensus       165 yLd~~pe~~l~RIk~RgR~~E~i~~eYL~~L~~~Y~~L~  203 (331)
T d1osna_         165 VCTVSLPSHLSRVSKRARPGETVNLPFVMVLRNVYIMLI  203 (331)
T ss_dssp             EEECCHHHHHHHCC------CCCCHHHHHHHHHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999998865555  5799999999997764

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.9e-17  Score=134.07  Aligned_cols=167  Identities=13%  Similarity=0.128  Sum_probs=102.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR  129 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~  129 (259)
                      .+.|+|+|+|||||||||+.|+++++   +..+..    + .....+..|..++.++..+..........+. .      
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~g---~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~-~------   71 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERFH---AAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMI-K------   71 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHH-H------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC---CceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHH-H------
Confidence            35688999999999999999999994   433321    1 1122456677787777765444432211110 0      


Q ss_pred             HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcch--HHHHHH
Q 025041          130 SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEH--LEFQRK  207 (259)
Q Consensus       130 ~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~--~~~~~r  207 (259)
                      ..+......+..+|+|+|+.+..  +.     ..+...+......||++|+|++|++++.+|+..+. ....  ..|.+.
T Consensus        72 ~~l~~~~~~~~g~i~dg~p~~~~--q~-----~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~~-~~~~r~~~y~~~  143 (180)
T d1akya1          72 DELTNNPACKNGFILDGFPRTIP--QA-----EKLDQMLKEQGTPLEKAIELKVDDELLVARITNAD-ALKKRLAAYHAQ  143 (180)
T ss_dssp             HHHHHCGGGGSCEEEESCCCSHH--HH-----HHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSHH-HHHHHHHHHHHH
T ss_pred             HHHhcCccccCCEeccCccchhh--hH-----HHHHhhHHHcCCCceeeeecccccchhhhcccccc-cccchHHHHHHH
Confidence            11111112234588899986532  11     01222233344679999999999999999987541 1110  133333


Q ss_pred             ---HHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          208 ---VAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       208 ---v~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                         +.+.|.+.  ..+++||+++++|+|+++|.+.|.
T Consensus       144 ~~~v~~~y~~~--~~~~~Id~~~~~eeV~~~I~~~l~  178 (180)
T d1akya1         144 TEPIVDFYKKT--GIWAGVDASQPPATVWADILNKLG  178 (180)
T ss_dssp             TTHHHHHHHHH--TCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhc--CCEEEEECCCCHHHHHHHHHHHHc
Confidence               34455442  468999999999999999998774

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=9.6e-21  Score=155.36  Aligned_cols=165  Identities=15%  Similarity=0.144  Sum_probs=96.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCC---CChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDR---TTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK  128 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~---~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~  128 (259)
                      ..++++|+|+|++||||||+++.|+++++.    +....+|..   +......+..++.+.... .......+...+...
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~----~~~~~ep~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~   80 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKND----ICLLTEPVEKWRNVNGVNLLELMYKDPKKW-AMPFQSYVTLTMLQS   80 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTTT----EEEECCTHHHHTCBTTBCHHHHHHHSHHHH-HHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhCC----cEEEEEecCccccccchhHhhhhccccccc-cchHHHHHHHHHHHH
Confidence            358899999999999999999999998854    233444420   001011223333322111 111122222222111


Q ss_pred             HHHHHHHHhcCCeEEEcccc------cchhhhhcCCCCCH---HHH----Hhh-hccCCCCCEEEEEeCCHHHHHhhcCC
Q 025041          129 RSMMEAKLKAGTTLIVDRYS------YSGVAFSSAKGIDI---EWC----KAP-EIGLLAPDSVLYLDIPPEKAAERGGY  194 (259)
Q Consensus       129 ~~~i~~~l~~g~~VI~DR~~------~s~~ay~~~~gl~~---~~~----~~~-~~~~~~PdlvI~Ld~~~e~~~~R~~~  194 (259)
                          .........++.|+++      ++..+|+... +..   ..+    ..+ ....+.||++|||++||+++.+|+..
T Consensus        81 ----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pdl~i~Ld~~~~~~~~Ri~~  155 (197)
T d2vp4a1          81 ----HTAPTNKKLKIMERSIFSARYCFVENMRRNGS-LEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQ  155 (197)
T ss_dssp             ----HHCCCCSSEEEEESCHHHHHHTHHHHHHHHTS-SCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHH
T ss_pred             ----HHHHhcccccccCceeecchHHHHHHHHHhcc-CChhHHHHHHHHHHHHHhhcccccchhheeecCHHHHHHHHHH
Confidence                1111223345555544      4444554422 221   111    122 23457899999999999999999988


Q ss_pred             CCCCcc---hHHHHHHHHHHHHhhh-------CCCeEEEcCC
Q 025041          195 GGERYE---HLEFQRKVAQCYQMLR-------DSSWKIIDAC  226 (259)
Q Consensus       195 R~d~~e---~~~~~~rv~~~y~~l~-------~~~~~vIDa~  226 (259)
                      |+...|   +.+|++++...|.++.       +.++++||++
T Consensus       156 R~r~~E~~i~~~yl~~l~~~Y~~~~~~~~~~~~~~v~~iD~n  197 (197)
T d2vp4a1         156 RARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD  197 (197)
T ss_dssp             HCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECC
T ss_pred             hCchhhhcCCHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence            765555   4789999999998863       1468899985

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=99.73  E-value=8.3e-18  Score=148.91  Aligned_cols=161  Identities=15%  Similarity=0.135  Sum_probs=96.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC------CCChHHHHHHH-HHhC-CCCCCH-------HHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD------RTTSVGQMISA-YLSN-QSHLDD-------HTIH  118 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~------~~~~~g~~ir~-~l~~-~~~~~~-------~~~~  118 (259)
                      ....|+|||++||||||+++.|++.+...  .+..+.||.      .++++.+.+.+ .... ......       ...+
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~~l~~~--~v~~~~EP~~~W~~~~~~~~L~~~y~~~~r~~~~~~~~~d~~~~~~~~Q   80 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVALGSRD--DIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQ   80 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC----C--CEEEECCCHHHHHTTSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             CceEEEEECCcCCCHHHHHHHHHHHhCCC--CeEEeccchhhccCCCCCchHHHHHhhHHhhccccccccchhhhhHHHH
Confidence            34669999999999999999999998754  355667771      13444333322 1110 011211       1222


Q ss_pred             HHHHHhHHHHHHHHHH----------HHhcCCeEEEcccccchh-hhhcC---CC-CCHHHHHhhh---ccCCCCCEEEE
Q 025041          119 LLFSANRWEKRSMMEA----------KLKAGTTLIVDRYSYSGV-AFSSA---KG-IDIEWCKAPE---IGLLAPDSVLY  180 (259)
Q Consensus       119 ll~~a~r~~~~~~i~~----------~l~~g~~VI~DR~~~s~~-ay~~~---~g-l~~~~~~~~~---~~~~~PdlvI~  180 (259)
                      +.|+..+......+.+          ....|.+||+|||++|+. +|...   .| ++.+.+..+.   ...+.||++||
T Consensus        81 l~fa~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivI~DRs~~S~~~vFa~~~~~~G~ms~~~~~~l~~~~~~~~~pdliIy  160 (329)
T d1e2ka_          81 ITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVL  160 (329)
T ss_dssp             HHHHHHHHHHHHHHGGGEEEECC----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTCCCCCTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccccccCCCceeeecchhhhhHHHHHHHHhcCCCCHHHHHHHHHHhcccCCCCEEEE
Confidence            3333222211122222          223467899999999874 33221   22 4443333332   34467999999


Q ss_pred             EeCCHHHHHhhcCCCCCCcc--hHHHHHHHHHHHHhhh
Q 025041          181 LDIPPEKAAERGGYGGERYE--HLEFQRKVAQCYQMLR  216 (259)
Q Consensus       181 Ld~~~e~~~~R~~~R~d~~e--~~~~~~rv~~~y~~l~  216 (259)
                      |++||+++.+|+.+|+..+|  +.+|+++++..|..+.
T Consensus       161 Ld~~pe~~l~RI~~RgR~~E~idl~YL~~L~~~Y~~L~  198 (329)
T d1e2ka_         161 GALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLA  198 (329)
T ss_dssp             EECCHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHH
Confidence            99999999999988866666  3789999999997764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.9e-16  Score=128.35  Aligned_cols=170  Identities=15%  Similarity=0.227  Sum_probs=102.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e--cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R--FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW  126 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~--~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~  126 (259)
                      .+.++|+|.|||||||||||+.|+++|+   +..+.+    +  ....++..++.++.+...+..........+. ..  
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g---~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~--   79 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS---FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALL-RN--   79 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS---CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHH-HH--
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC---CeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHH-HH--
Confidence            4667899999999999999999999984   333321    0  0011334456665555544333222111110 00  


Q ss_pred             HHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC------CCCcc
Q 025041          127 EKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG------GERYE  200 (259)
Q Consensus       127 ~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R------~d~~e  200 (259)
                         ............+|+|+++.+.           +....+......|+.+++|++|++++.+|...+      .+.. 
T Consensus        80 ---~~~~~~~~~~~~~vl~g~p~~~-----------~q~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~-  144 (196)
T d1ukza_          80 ---AISDNVKANKHKFLIDGFPRKM-----------DQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDN-  144 (196)
T ss_dssp             ---HHHHHHHTTCCEEEEETCCCSH-----------HHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCS-
T ss_pred             ---HHHhhhccCCCceeeeccchhH-----------HHHHHHHHhccccceeeccCCCHHHHHHHHHhccccccccchH-
Confidence               0112222334578889887642           222233345678999999999999999997532      2221 


Q ss_pred             hHHHHHHHHHHHHh----h-----hCCCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          201 HLEFQRKVAQCYQM----L-----RDSSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       201 ~~~~~~rv~~~y~~----l-----~~~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                      ...+.+++ +.|.+    +     ....++.||+++++|+|+++|.+.|.+.|
T Consensus       145 ~e~~~~r~-~~y~~~~~~l~~~y~~~~~~~~Id~~~s~eeV~~~I~~~i~~~L  196 (196)
T d1ukza_         145 IESIKKRF-NTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDSL  196 (196)
T ss_dssp             HHHHHHHH-HHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhhC
Confidence            12233333 33332    1     12468999999999999999999998754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=2e-16  Score=125.58  Aligned_cols=165  Identities=13%  Similarity=0.054  Sum_probs=95.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      ..+++|+|.|++||||||+++.|+++|+.   .......-.     .+........+...........+  .+.  ...+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~---~~~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~   71 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHA---AFLDGDFLH-----PRRNIEKMASGEPLNDDDRKPWL--QAL--NDAA   71 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTC---EEEEGGGGC-----CHHHHHHHHTTCCCCHHHHHHHH--HHH--HHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCC---Ceechhhhh-----HHHHhhhhccCcceehhhhHHHH--HHH--HHHH
Confidence            46899999999999999999999999953   222211110     11111222222222221111110  000  1123


Q ss_pred             HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY  212 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y  212 (259)
                      ...+..+..++.+.... .           .....+......|..+|||++|++++.+|+..|.+.....+..+...+.|
T Consensus        72 ~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~v~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~  139 (171)
T d1knqa_          72 FAMQRTNKVSLIVCSAL-K-----------KHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETL  139 (171)
T ss_dssp             HHHHHHCSEEEEECCCC-S-----------HHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHHC
T ss_pred             HHHHhccCceEeeccch-H-----------HHHHHHHHHhCCCceEEeecCCHHHHHHHHHhCcCCCccHHHHHhhHHHh
Confidence            33444565665543221 1           11112223456678999999999999999988765544444443333334


Q ss_pred             Hhhh--CCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          213 QMLR--DSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       213 ~~l~--~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      +.+.  +..+++||+++|+|+|+++|.+.|.
T Consensus       140 e~~~~~e~~~~~id~~~~~e~v~~~i~~~lk  170 (171)
T d1knqa_         140 QEPGADETDVLVVDIDQPLEGVVASTIEVIK  170 (171)
T ss_dssp             CCCCTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             hCCCcccCCEEEEeCCCCHHHHHHHHHHHhc
Confidence            3322  2468999999999999999999875

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.71  E-value=1.6e-16  Score=129.30  Aligned_cols=172  Identities=16%  Similarity=0.136  Sum_probs=102.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWE  127 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~  127 (259)
                      ++|+.|+|.|||||||||||+.|+++|   |+..+.+    ++ ...++..|..++.++..+..........+..     
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~---g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~-----   72 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF---CVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIE-----   72 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH---TCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHH-----
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHh---CCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeeh-----
Confidence            478889999999999999999999999   4544321    11 1113455666666655554443322111100     


Q ss_pred             HHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCc-ch-HHHH
Q 025041          128 KRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERY-EH-LEFQ  205 (259)
Q Consensus       128 ~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~-e~-~~~~  205 (259)
                        ..+... ...+.+|+|+|+.+..- .      ..+...+......|+++++|+++.++..+|+..|.... +. ..+.
T Consensus        73 --~~l~~~-~~~~g~ii~g~pr~~~q-a------~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~~d~~~e~i~  142 (190)
T d1ak2a1          73 --KNLETP-PCKNGFLLDGFPRTVRQ-A------EMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHSDDNKKALK  142 (190)
T ss_dssp             --HHHTSG-GGTTCEEEESCCCSHHH-H------HHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECCCCCHHHHH
T ss_pred             --hhhccc-cccCceeecccccchhH-H------HHHHHHhhhccccccccccccchHHHHHhhhccCCCCCchhhHHHH
Confidence              111111 12345778888864311 0      01222233445678999999999999999997663211 11 1222


Q ss_pred             HHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          206 RKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       206 ~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                      ++. +.|.+.        . ...+++||+++++|+|+++|+++|...
T Consensus       143 ~R~-~~y~~~~~p~~~~y~~~~~~~~Id~~~s~eeV~~~I~~~l~k~  188 (190)
T d1ak2a1         143 IRL-EAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA  188 (190)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence            222 222221        1 246789999999999999999998754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.6e-16  Score=127.38  Aligned_cols=173  Identities=20%  Similarity=0.214  Sum_probs=98.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-C-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-P-DRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK  128 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p-~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~  128 (259)
                      |++|+|.|||||||||||+.|+++|   |+..+.+    +. . ...++.++.+..++..+..+.......+. ..+.. 
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~---g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~-   75 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY---GYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLL-KREMD-   75 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH---CCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHH-HHHHH-
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh---CCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHH-HHhhc-
Confidence            5789999999999999999999999   4544321    10 0 11233344444444444333332211110 01100 


Q ss_pred             HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc-hHHH
Q 025041          129 RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE-HLEF  204 (259)
Q Consensus       129 ~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e-~~~~  204 (259)
                        ...........+++|+|+.+.-..        +.+.........|+++|+++++.+++.+|...|.   .+.+ ..+.
T Consensus        76 --~~~~~~~~~~~~~~~g~pr~~~~~--------~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~  145 (194)
T d1teva_          76 --QTMAANAQKNKFLIDGFPRNQDNL--------QGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRES  145 (194)
T ss_dssp             --HHHHHCTTCCEEEEESCCCSHHHH--------HHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHH
T ss_pred             --ccchhhhcccceeeccchhhHHHH--------HHHhhhhhccccccEEEeecCcchhheeecccCCCcccCCccchHH
Confidence              000111224568889988753111        1222222344568999999999999998876541   1111 2233


Q ss_pred             HHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          205 QRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       205 ~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      ..+..+.|.+.        . ...+++||+++|+++|+++|.+.|+.
T Consensus       146 i~~r~~~y~~~~~~l~~~y~~~~~~~~IDa~~s~eeV~~~I~~il~k  192 (194)
T d1teva_         146 LEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  192 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            33322333321        1 24688999999999999999998864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.70  E-value=3.9e-16  Score=125.57  Aligned_cols=166  Identities=14%  Similarity=0.140  Sum_probs=100.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-----cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-----FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-----~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      |.|+|.|+|||||||+|+.|+++|+   +..+...     +....+..|..++.++..+..+...... .+...+..   
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~---~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~---   73 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYG---IPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTI-GIVRERLS---   73 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHH-HHHHHHHT---
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC---CceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHH-HHHHHHhh---
Confidence            4599999999999999999999994   4433211     1222345566676666654433332111 11111100   


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHH--
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKV--  208 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv--  208 (259)
                        .+..  ...++.|+++.......       .+..........|+++++|+++.+.+.+|+..+++. +  .+.+|+  
T Consensus        74 --~~~~--~~~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~~~~-e--~~~~Rl~~  139 (182)
T d1zina1          74 --KDDC--QNGFLLDGFPRTVAQAE-------ALETMLADIGRKLDYVIHIDVRQDVLMERLTADDNE-A--TVANRLEV  139 (182)
T ss_dssp             --SGGG--TTCEEEESCCCSHHHHH-------HHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCSH-H--HHHHHHHH
T ss_pred             --chhh--hcCcccccccchhHHHH-------HHHHhhhccCCceeeeeccccccchhhhccccccch-H--HHHHHHHH
Confidence              1111  23466777776433221       111112234567899999999999999999865321 1  222222  


Q ss_pred             --------HHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 025041          209 --------AQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQV  244 (259)
Q Consensus       209 --------~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l  244 (259)
                              .+.|.+  ...+++||+++++|+|+++|.+.|....
T Consensus       140 y~~~~~~l~~~y~~--~~~~~~Id~~~~~eeV~~~I~~~L~~l~  181 (182)
T d1zina1         140 NMKQMKPLVDFYEQ--KGYLRNINGEQDMEKVFADIRELLGGLA  181 (182)
T ss_dssp             HHHHHTHHHHHHHH--HTCEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--cCCEEEEECCCCHHHHHHHHHHHHHhcc
Confidence                    222332  1468999999999999999999998764

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=99.69  E-value=1.3e-16  Score=141.52  Aligned_cols=163  Identities=16%  Similarity=0.069  Sum_probs=101.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC------CCChHHHHHHHHHhC--CCCCCHH-HHH----
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD------RTTSVGQMISAYLSN--QSHLDDH-TIH----  118 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~------~~~~~g~~ir~~l~~--~~~~~~~-~~~----  118 (259)
                      +.+-..|+|||++|+||||+++.|++++...+ .+..+.||.      .++++.+.+.+....  .+..... ...    
T Consensus         3 ~~~~~rI~iEG~iGsGKSTl~~~L~~~l~~~~-~v~~~~EPm~yW~~~~g~~~l~~iy~~~~~~~~~~~~~~~~~~~~~~   81 (333)
T d1p6xa_           3 MVTIVRIYLDGVYGIGKSTTGRVMASAASGGS-PTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQGNLAVDDAALITAH   81 (333)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHSGGGCSS-CEEEECCCHHHHHTSSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred             CCceEEEEEECCccCCHHHHHHHHHHHhccCC-CeEEEeCchhhhcccCCCchHHHHHHhHHhccccccchhhHHHHHHH
Confidence            44567899999999999999999999997654 566677771      144555544332211  1122221 111    


Q ss_pred             --HHHHHhHHHHHH-HHHH---------HHhcCCeEEEcccccchh-hhhc---CCC-CCHHHHHhhh---ccCCCCCEE
Q 025041          119 --LLFSANRWEKRS-MMEA---------KLKAGTTLIVDRYSYSGV-AFSS---AKG-IDIEWCKAPE---IGLLAPDSV  178 (259)
Q Consensus       119 --ll~~a~r~~~~~-~i~~---------~l~~g~~VI~DR~~~s~~-ay~~---~~g-l~~~~~~~~~---~~~~~Pdlv  178 (259)
                        +.|+... ..+. ...+         ....+.+||+|||++|+. .|..   ..| ++...+..+.   ...+.||++
T Consensus        82 ~Q~~f~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vI~DR~~~Ss~~iF~~~~y~~G~ls~~~~~~l~~~~~~~~~pd~i  160 (333)
T d1p6xa_          82 YQSRFTTPY-LILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGDMSMCALMAMVATLPREPQGGNI  160 (333)
T ss_dssp             HHHHHHHHH-HHHHHHHHTTSCEEEECCCSCCSEEEEEESCTHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCCCTTEEE
T ss_pred             HHHHHHHHH-HHHHHHHHHHhhhhhhcccccCCCeEEEECCcccchHHHHHHhhcCCCCCHHHHHHHHHHhcccCCCCEE
Confidence              1111100 0011 1111         112356799999999874 3322   123 4544444433   344678999


Q ss_pred             EEEeCCHHHHHhhcCCCCCCcc--hHHHHHHHHHHHHhhh
Q 025041          179 LYLDIPPEKAAERGGYGGERYE--HLEFQRKVAQCYQMLR  216 (259)
Q Consensus       179 I~Ld~~~e~~~~R~~~R~d~~e--~~~~~~rv~~~y~~l~  216 (259)
                      |||++||+++.+|+.+|+..+|  +.+|+++++..|..+.
T Consensus       161 IyLd~~pe~~l~RI~~RgR~~E~id~~YL~~L~~~Y~~l~  200 (333)
T d1p6xa_         161 VVTTLNVEEHIRRLRTRARIGEQIDITLIATLRNVYFMLV  200 (333)
T ss_dssp             EEEECCHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988766666  4799999999998764

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.67  E-value=9.5e-16  Score=123.94  Aligned_cols=165  Identities=16%  Similarity=0.138  Sum_probs=99.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS  130 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~  130 (259)
                      |.|+|.|+|||||||+|+.|+++|+   +..+..    + +....++.|..+++++..+..........+ ...+     
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g---~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~-~~~~-----   71 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYG---TPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGI-VRER-----   71 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHH-HHHH-----
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC---CceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHH-HHHh-----
Confidence            4689999999999999999999994   433321    1 111235667777777665544433221111 1111     


Q ss_pred             HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcch-----HHHH
Q 025041          131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEH-----LEFQ  205 (259)
Q Consensus       131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~-----~~~~  205 (259)
                       +.. ......+|+|+|+.+.....       .+...+......+.++++|+++++.+.+|+..++ ..|.     .+|.
T Consensus        72 -~~~-~~~~~~~vl~g~p~~~~~~~-------~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~~-~~e~i~~R~~~y~  141 (182)
T d1s3ga1          72 -LSK-SDCDNGFLLDGFPRTVPQAE-------ALDQLLADMGRKIEHVLNIQVEKEELIARLTADD-NPDTVTNRLEVNM  141 (182)
T ss_dssp             -HTS-STTSSCEEEESCCCSHHHHH-------HHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTC-SHHHHHHHHHHHH
T ss_pred             -hcc-cccccceeeeccccchhHHH-------HHHHHhhcCCCeeeeccchhhhhhhhhhhhhccc-hhHHHHHHHHHHH
Confidence             111 11234578899987543221       1112222344568899999999999999976542 2121     1222


Q ss_pred             HH---HHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          206 RK---VAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       206 ~r---v~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      +.   +.+.|.+  ...+++||+++|+|+|+++|.++|.
T Consensus       142 ~~~~~i~~~y~~--~~~~~~Id~~~~~eeV~~~I~~il~  178 (182)
T d1s3ga1         142 NQTAPLLAFYDS--KEVLVNINGQKDIKDVFKDLDVILQ  178 (182)
T ss_dssp             HHHHHHHHHHHT--TTCEEEEECSSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh--cCCEEEEECCCCHHHHHHHHHHHHH
Confidence            22   1222322  2578999999999999999988774

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.66  E-value=1.8e-15  Score=123.69  Aligned_cols=173  Identities=14%  Similarity=0.171  Sum_probs=103.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWE  127 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~  127 (259)
                      .|.+.|+|.|+|||||||+++.|+++|+   +..+.+    + +....+..+..++..+..+..........+. .    
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~~g---~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~-~----   75 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKHFE---LKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLV-L----   75 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHHBC---CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHH-H----
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHHC---CeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhh-h----
Confidence            5778899999999999999999999884   433321    0 1111233444444444443333322111110 0    


Q ss_pred             HHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcch--HHHH
Q 025041          128 KRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEH--LEFQ  205 (259)
Q Consensus       128 ~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~--~~~~  205 (259)
                        ..+.. . ....+|+|+|+.+.           .+...++. ...|+++|+|++|.+++.+|+..|.+....  ..|.
T Consensus        76 --~~~~~-~-~~~~~ildGfPr~~-----------~q~~~l~~-~~~~~~vi~L~v~~~~l~~R~~~r~e~~~kr~~~y~  139 (189)
T d2ak3a1          76 --HELKN-L-TQYNWLLDGFPRTL-----------PQAEALDR-AYQIDTVINLNVPFEVIKQRLTDRPETVVKRLKAYE  139 (189)
T ss_dssp             --HHHHH-H-TTSCEEEESCCCSH-----------HHHHHHHT-TCCCCEEEEEECCHHHHHHHHTGSHHHHHHHHHHHH
T ss_pred             --hhhhh-h-hhcCcccccccchh-----------hHHHHhhh-cCcceEEEEEeccchhhhhhcccchHHHHHHHHHHH
Confidence              11111 1 22347789998753           22333333 457899999999999999999765321110  1222


Q ss_pred             HH---HHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCCC
Q 025041          206 RK---VAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKP  252 (259)
Q Consensus       206 ~r---v~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~~~  252 (259)
                      +.   +.+.|.+.  ..+++||++ ++++|+++|.+.|...++.....-+
T Consensus       140 ~~~~~v~~~Y~~~--~~l~~idg~-~~~eV~~~I~~~i~~~l~~~~~~~~  186 (189)
T d2ak3a1         140 AQTEPVLEYYRKK--GVLETFSGT-ETNKIWPHVYAFLQTKLPQRSQETS  186 (189)
T ss_dssp             HHHHHHHHHHHHH--TCEEEEECS-SHHHHHHHHHHHHHTTSCBCSCCCC
T ss_pred             HHHHHHHHHHHhc--CCEEEECCC-ChHHHHHHHHHHHHHHhhccccCCC
Confidence            22   23345432  467899987 5799999999999998887666544

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.65  E-value=2e-15  Score=123.36  Aligned_cols=168  Identities=18%  Similarity=0.240  Sum_probs=100.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-----cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-----FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWE  127 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-----~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~  127 (259)
                      .++++|+|.|||||||||||+.|++++   |+..+...     .....+..|..+.+++..+..........+..     
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~---g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   77 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKY---GYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLR-----   77 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHT---CCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHH-----
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHh---CCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehh-----
Confidence            578999999999999999999999988   44433211     01112344555555555443333322111100     


Q ss_pred             HHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCC------CCCCcch
Q 025041          128 KRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGY------GGERYEH  201 (259)
Q Consensus       128 ~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~------R~d~~e~  201 (259)
                        ..+.......+.+|+|+||.+.           ..+..+...+..|+.++++++++++..+|...      |.+..+ 
T Consensus        78 --~~l~~~~~~~~g~ildg~pr~~-----------~qa~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~d~~-  143 (194)
T d3adka_          78 --DAMVAKVDTSKGFLIDGYPREV-----------KQGEEFERKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNE-  143 (194)
T ss_dssp             --HHHHTTTTTCSCEEEESCCSSH-----------HHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHTCCCCCS-
T ss_pred             --hhhhhcccccccceeeeccchh-----------HHHHHHHHHhCCccchhccccchhhhHhHhhhhcccccCCcchH-
Confidence              1111111234458889998743           22333344566799999999999999998542      322221 


Q ss_pred             HHHHHHHHHHHHh-------hhC-CCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          202 LEFQRKVAQCYQM-------LRD-SSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       202 ~~~~~rv~~~y~~-------l~~-~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      ..+.+|+..++++       ..+ ..++.||+++++++|+++|.+.|+.
T Consensus       144 e~i~~R~~~y~~~~~~~~~~y~~~~~~~~Id~~~s~~eV~~~I~~~i~~  192 (194)
T d3adka_         144 ETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLDT  192 (194)
T ss_dssp             TTHHHHHHHHHHHTHHHHHHHTTTTCEEEEECCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            1223333222211       112 4688999999999999999998864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.60  E-value=6.7e-16  Score=122.73  Aligned_cols=164  Identities=13%  Similarity=0.079  Sum_probs=95.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC--CCCHHHHHHHHHHhHHHH-H
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS--HLDDHTIHLLFSANRWEK-R  129 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~--~~~~~~~~ll~~a~r~~~-~  129 (259)
                      ..|++|+|.|++||||||+++.|++++   |.+++.+.        ++.++..+....  ...+.......  ..+.. .
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~~l---g~~~~~~~--------~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   68 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFH--------SDDLWGYIKHGRIDPWLPQSHQQNR--MIMQIAA   68 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCS---SSCEEEEC--------TTHHHHTCCSSCCCTTSSSHHHHHH--HHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEec--------HHHHHHHHhcCCcccccchhhhHHH--HHHHHHH
Confidence            368999999999999999999998876   44555433        122333333221  11111100000  00111 1


Q ss_pred             HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc-hHHHHHHH
Q 025041          130 SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE-HLEFQRKV  208 (259)
Q Consensus       130 ~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e-~~~~~~rv  208 (259)
                      ..+......+..||+|..+....            ...+ .....+...+||+++++++.+|+..|+.... ..+....+
T Consensus        69 ~~~~~~~~~~~~vi~~~~~~~~~------------~~~~-~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~  135 (176)
T d1zp6a1          69 DVAGRYAKEGYFVILDGVVRPDW------------LPAF-TALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADL  135 (176)
T ss_dssp             HHHHHHHHTSCEEEECSCCCTTT------------THHH-HTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHH
T ss_pred             HHHHHHHhcCCCeEecccccHHH------------HHHH-HhcccccccccCCCCHHHHHHHHHhCCCccccchhhHHHH
Confidence            23344456678888885432111            1111 2235577899999999999999988754432 23444444


Q ss_pred             HHHHHhhhCCCeEEEcC-CCCHHHHHHHHHHHHHH
Q 025041          209 AQCYQMLRDSSWKIIDA-CQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       209 ~~~y~~l~~~~~~vIDa-~~s~eev~~~I~~~i~~  242 (259)
                      .+.+..+.....++||+ +.++|+++++|.+.+..
T Consensus       136 ~~~~~~~~~~~~~~idt~~~~~ee~~~~I~~~l~~  170 (176)
T d1zp6a1         136 HSQFADLGAFEHHVLPVSGKDTDQALQSAINALQS  170 (176)
T ss_dssp             HHHTTCCGGGGGGEEECTTCCTTTTTTTTHHHHHH
T ss_pred             HHHHhhcccccCEEEECCCCCHHHHHHHHHHHHHc
Confidence            44443333333456776 57999999999998765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.57  E-value=1.5e-14  Score=113.87  Aligned_cols=166  Identities=13%  Similarity=0.118  Sum_probs=93.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEA  134 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~  134 (259)
                      .++|+|.|++||||||+|+.|+++++.   .++. .        ++.++..+.+.......... ............+..
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~~~---~~~~-~--------~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   68 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQLDN---SAYI-E--------GDIINHMVVGGYRPPWESDE-LLALTWKNITDLTVN   68 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSS---EEEE-E--------HHHHHTTCCTTCCCGGGCHH-HHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCC---CEEE-e--------hHHHHHHHhccccchhHHHH-HHHHHHHHHHHHHHH
Confidence            368999999999999999999998853   2221 1        23333333322111100000 000001111133455


Q ss_pred             HHhcCCeEEEcccccchhhhhcCCCCCHHHHHhh-hccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc-hHHHHHHHHHHH
Q 025041          135 KLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAP-EIGLLAPDSVLYLDIPPEKAAERGGYGGERYE-HLEFQRKVAQCY  212 (259)
Q Consensus       135 ~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~-~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e-~~~~~~rv~~~y  212 (259)
                      .+..+..+|.|..+......        .+.... ......+..++||++|++++.+|+..|+...+ .....+...+ +
T Consensus        69 ~~~~~~~~iid~~~~~~~~~--------~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~-~  139 (176)
T d2bdta1          69 FLLAQNDVVLDYIAFPDEAE--------ALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLELVEE-F  139 (176)
T ss_dssp             HHHTTCEEEEESCCCHHHHH--------HHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHHHHH-H
T ss_pred             HHhcCCCcccccccccHHHH--------HHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCchhhhHHHHHHHHH-H
Confidence            66788889999766543211        122211 23335567899999999999999988743221 1122222222 2


Q ss_pred             HhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 025041          213 QMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD  242 (259)
Q Consensus       213 ~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~  242 (259)
                      ........++||++ .+++++.+.|.+.+.+
T Consensus       140 ~~~~~~~~~~id~~~~~~~~~~~~I~~i~~~  170 (176)
T d2bdta1         140 ESKGIDERYFYNTSHLQPTNLNDIVKNLKTN  170 (176)
T ss_dssp             HHTTCCTTSEEECSSSCGGGHHHHHHHHHHC
T ss_pred             HhCCCCCeEEEECCCCCHHHHHHHHHHHHhc
Confidence            22222355677775 6899999888887754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.55  E-value=1.1e-14  Score=115.39  Aligned_cols=153  Identities=16%  Similarity=0.120  Sum_probs=84.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC--------CCCHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS--------HLDDHTIHLLFSA  123 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~--------~~~~~~~~ll~~a  123 (259)
                      .++|+.|+|+|++||||||+++.|+++|+.  +.++..         .+..........        .......      
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~--~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~------   64 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDG--FQHLEV---------GKLVKENHFYTEYDTELDTHIIEEKDE------   64 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTT--EEEEEH---------HHHHHHTTCSCC------CCCCCHHHH------
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCC--CcEEeH---------HHHHHHHhhhhhHHHhhcccchHHHHH------
Confidence            368999999999999999999999999852  333321         111111111100        0111100      


Q ss_pred             hHHHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcch--
Q 025041          124 NRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEH--  201 (259)
Q Consensus       124 ~r~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~--  201 (259)
                      .+  ..+.+......+..++.|.+....             +     ....++.+|||++|++++.+|+..|+.....  
T Consensus        65 ~~--~~~~~~~~i~~~~~~~~~~~~~~~-------------~-----~~~~~~~vI~L~~~~e~l~~Rl~~R~~~~~~~~  124 (174)
T d1y63a_          65 DR--LLDFMEPIMVSRGNHVVDYHSSEL-------------F-----PERWFHMVVVLHTSTEVLFERLTKRQYSEAKRA  124 (174)
T ss_dssp             HH--HHHHHHHHHTSSSEEEEECSCCTT-------------S-----CGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHH
T ss_pred             HH--HHHHHHhhhhhcccccccHHHHHH-------------H-----HHhcCceEEEEECCHHHHHHHHHhCCCcccccc
Confidence            01  012233445566677777543311             0     1134779999999999999999877543211  


Q ss_pred             -HHHHHHHHHHHHh---hhCCCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          202 -LEFQRKVAQCYQM---LRDSSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       202 -~~~~~rv~~~y~~---l~~~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                       ....+.+...|.+   .....+++.+++.++|++.+.|.+++.
T Consensus       125 ~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~t~ee~~~~V~~I~~  168 (174)
T d1y63a_         125 ENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAATVEEIRE  168 (174)
T ss_dssp             HHHHHHHTTHHHHHHHHHSCGGGEEEEECSSHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhHHHHHHhhcCCEEEECCCCCHHHHHHHHHHHHH
Confidence             0111112222322   222234444457899999888876544

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.45  E-value=1.2e-13  Score=109.18  Aligned_cols=159  Identities=14%  Similarity=0.031  Sum_probs=87.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHH----h-C--------CCCC--CHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL----S-N--------QSHL--DDHTIH  118 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l----~-~--------~~~~--~~~~~~  118 (259)
                      ..++|+|.|++||||||+|+.|++.|+..   ...+.        ++.+....    . .        ...+  ......
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~~~---~~~~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLPEP---WLAFG--------VDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRA   70 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSC---EEEEE--------HHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCC---eEEee--------cchhhccccccccchhHHhhhhcccchhHHHHHHH
Confidence            46799999999999999999999999643   22222        11111110    0 0        0011  111111


Q ss_pred             HHHHHhHHHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC
Q 025041          119 LLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER  198 (259)
Q Consensus       119 ll~~a~r~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~  198 (259)
                      + +    ......+......+..+|.+..+.... +.      ...+..  .....+...|||++|++++.+|...|+++
T Consensus        71 ~-~----~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~------~~~~~~--~~~~~~~~~v~l~~~~e~~~~R~~~R~~~  136 (178)
T d1qhxa_          71 L-E----GAWAEGVVAMARAGARIIIDDVFLGGA-AA------QERWRS--FVGDLDVLWVGVRCDGAVAEGRETARGDR  136 (178)
T ss_dssp             H-H----HHHHHHHHHHHHTTCEEEEEECCTTTH-HH------HHHHHH--HHTTCCEEEEEEECCHHHHHHHHHHTSSS
T ss_pred             H-H----HHHHHHHHHHHhhccceEEeeeecchH-HH------HHHHHH--hhcCCceeecccCCCHHHHHHHHHhcCCc
Confidence            1 1    011122334456677777765433211 10      011111  12356778999999999999999877666


Q ss_pred             cchHHHHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHH
Q 025041          199 YEHLEFQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIV  240 (259)
Q Consensus       199 ~e~~~~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i  240 (259)
                      .+.  +.......+.... ..-++||++ .++||++++|.+.|
T Consensus       137 ~~~--~~~~~~~~~~~~~-~~dl~IDts~~s~ee~a~~I~~~v  176 (178)
T d1qhxa_         137 VAG--MAAKQAYVVHEGV-EYDVEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             CTT--HHHHHTTGGGTTC-CCSEEEETTSSCHHHHHHHHHTTC
T ss_pred             chh--hhhhhhhhhhcCC-CCCEEEECCCCCHHHHHHHHHHhc
Confidence            542  1111111111111 123689986 69999999998754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.45  E-value=1.1e-12  Score=103.83  Aligned_cols=144  Identities=16%  Similarity=0.193  Sum_probs=81.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHH----HHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWE----KRSMME  133 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~----~~~~i~  133 (259)
                      |+|.|++||||||+++.|+++|   |++++..         +..|.+..  +  ++...   ++......    ....+.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l---~~~~~d~---------d~~ie~~~--g--~~i~~---~~~~~g~~~~r~~e~~v~   63 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL---DLVFLDS---------DFLIEQKF--N--QKVSE---IFEQKRENFFREQEQKMA   63 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH---TCEEEEH---------HHHHHHHH--T--SCHHH---HHHHHCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---CCCEEec---------CchhhhHH--h--hhhhh---HHHhhhhccchhhhhhhc
Confidence            7888999999999999999999   4554432         22233221  1  11110   11110000    012233


Q ss_pred             HHH-hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC--CC---cch---HHH
Q 025041          134 AKL-KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG--ER---YEH---LEF  204 (259)
Q Consensus       134 ~~l-~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~--d~---~e~---~~~  204 (259)
                      ..+ ..+..|+.-+.   .....              ..+...+.+|||++|++++.+|+..+.  .|   .+.   .+.
T Consensus        64 ~~l~~~~~~v~~~~g---~~~~~--------------~~l~~~~~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l  126 (161)
T d1viaa_          64 DFFSSCEKACIATGG---GFVNV--------------SNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKL  126 (161)
T ss_dssp             HHHTTCCSEEEECCT---TGGGS--------------TTGGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHH
T ss_pred             hhhhhcccccccccc---chhhH--------------HHHHhCCeEEEeccchHHHHHHHccccccccccccCchHHHHH
Confidence            333 34455554321   11100              112335689999999999999986542  22   111   122


Q ss_pred             HHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHH
Q 025041          205 QRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIV  240 (259)
Q Consensus       205 ~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i  240 (259)
                      .+.....|.+.++   ++||++ .++++++++|.+.|
T Consensus       127 ~~~r~~~Y~~~ad---~~Idt~~~s~eei~~~I~~~i  160 (161)
T d1viaa_         127 YNERLSKYEQKAN---FILNIENKNIDELLSEIKKVI  160 (161)
T ss_dssp             HHHHHHHHHHHCS---EEEECTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCC---EEEECCCCCHHHHHHHHHHHh
Confidence            2333456766654   678975 79999999999876

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.39  E-value=1e-11  Score=102.58  Aligned_cols=168  Identities=17%  Similarity=0.148  Sum_probs=98.2

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR  129 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~  129 (259)
                      ...+|++|+|+|++||||||+++.|+++|.. .++.+++++        |+.+|+.+...-.+++.....  .+.+..  
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ld--------gD~iR~~l~~~l~ys~~~r~~--~~~r~~--   87 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD--------GDNIRFGLNKDLGFSEADRNE--NIRRIA--   87 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC--------HHHHTTTTTTTCCSSHHHHHH--HHHHHH--
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEc--------chHHHHhhcCCCCCChhHHHH--HHHHHH--
Confidence            3468999999999999999999999998854 466776654        677777654322233321100  011111  


Q ss_pred             HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhh------ccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHH
Q 025041          130 SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPE------IGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLE  203 (259)
Q Consensus       130 ~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~------~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~  203 (259)
                      ........+|.+||++--...  ..      ..++.+.+.      .....+.+.|||++|.+++.+|...+.  |.. .
T Consensus        88 ~~a~~~~~~g~~viv~~i~~~--~~------~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~--y~~-~  156 (208)
T d1m7ga_          88 EVAKLFADSNSIAITSFISPY--RK------DRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGL--YKK-A  156 (208)
T ss_dssp             HHHHHHHHTTCEEEEECCCCC--HH------HHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCH--HHH-H
T ss_pred             HHHHHHhccCCceeeeccccc--HH------HHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccc--hhh-h
Confidence            122334467888888632111  00      013333322      234567789999999999999976531  100 0


Q ss_pred             HHHH------HHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 025041          204 FQRK------VAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD  242 (259)
Q Consensus       204 ~~~r------v~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~  242 (259)
                      ....      +...|+... ..-++||++ .++++.+++|.+.|..
T Consensus       157 ~~~~~~~~~gvd~~ye~P~-~~dl~Idt~~~s~~e~~~~Ii~~L~~  201 (208)
T d1m7ga_         157 REGVIKEFTGISAPYEAPA-NPEVHVKNYELPVQDAVKQIIDYLDT  201 (208)
T ss_dssp             HHTSSSSCBTTTBCCCCCS-SCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             hcCcccceecccccCCCCC-CCcEEEeCCCCCHHHHHHHHHHHHHH
Confidence            0000      011122221 245788975 6999999999987753

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.38  E-value=2.9e-12  Score=101.35  Aligned_cols=183  Identities=13%  Similarity=0.068  Sum_probs=96.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      .-.+.|+|+|++||||||+|+.|+++++   .+.+  .+..     ...+.+........................  ..
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~~~~---~~~i--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   72 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAAVFN---TTSA--WEYG-----REFVFEKLGGDEQAMQYSDYPQMALGHQRY--ID   72 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHHHTT---CEEE--CCTT-----HHHHHHSSSSCTTSSCTTTHHHHHHHHHHH--HH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHhC---CCeE--eeeh-----HHHhhhhccCCcccccHHHHHHHHHHHHHH--HH
Confidence            3568899999999999999999999984   3332  2211     122222211111111000000101111111  11


Q ss_pred             HHHHhcCCeEEEcccccchhhhhcCC-CCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC  211 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~~~-gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~  211 (259)
                      .........++.|++..+..+|.... .......... .....+++.+++..+......+...+.+.....++++.+.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (192)
T d1lw7a2          73 YAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSM-IKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL  151 (192)
T ss_dssp             HHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHH-HHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred             HhhhhcccccccccccHHHHHHHHHhcCCchHHHHhh-hhhhhhccccccccccccccchhhhhcchhhhHHHHHHHHHH
Confidence            22234567899999988888775421 1111111111 123467777777776665555543332222234566666666


Q ss_pred             HHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcC
Q 025041          212 YQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKG  250 (259)
Q Consensus       212 y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~  250 (259)
                      |.+.. ..++.|++ .+.++.+++|.+.|+..|..+...
T Consensus       152 l~~~~-~~~i~i~~-~~~~e~~~~i~~~I~~ll~~~~~~  188 (192)
T d1lw7a2         152 LDKYK-VPYIEIES-PSYLDRYNQVKAVIEKVLNEEEIS  188 (192)
T ss_dssp             HHGGG-CCCEEEEC-SSHHHHHHHHHHHHHHHTSCCCCS
T ss_pred             HHHCC-CCEEEeCC-CCHHHHHHHHHHHHHHHHCcCcHh
Confidence            65543 46777875 689999999999999888766543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=3.6e-12  Score=100.98  Aligned_cols=62  Identities=19%  Similarity=0.291  Sum_probs=43.0

Q ss_pred             CCEEEEEeCCHHHHHhhcCCCCCC--c---chH----HHHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHH
Q 025041          175 PDSVLYLDIPPEKAAERGGYGGER--Y---EHL----EFQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEI  239 (259)
Q Consensus       175 PdlvI~Ld~~~e~~~~R~~~R~d~--~---e~~----~~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~  239 (259)
                      ...+|||+++++++.+|+..+..|  .   ...    ++.......|.++++   ++||++ .++++++++|.+.
T Consensus        93 ~~~~I~L~~~~~~~~~R~~~~~~Rpll~~~~~~e~~~~l~~eR~~~Y~~~ad---~~Idt~~~s~~ei~~~Ii~~  164 (165)
T d2iyva1          93 GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVAT---MRVDTNRRNPGAVVRHILSR  164 (165)
T ss_dssp             TSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCS---EEEECSSSCHHHHHHHHHTT
T ss_pred             ccceeeeeccchhhhhcccccccchhccCccHHHHHHHHHHHHHHHHHhhCC---EEEECCCCCHHHHHHHHHhc
Confidence            457899999999999998754333  1   111    222233356776665   789975 6999999999864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.35  E-value=2.8e-12  Score=102.12  Aligned_cols=62  Identities=24%  Similarity=0.247  Sum_probs=41.4

Q ss_pred             CEEEEEeCCHHHHHhhcCCC---CCCc--ch-------HHHHHHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHH
Q 025041          176 DSVLYLDIPPEKAAERGGYG---GERY--EH-------LEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       176 dlvI~Ld~~~e~~~~R~~~R---~d~~--e~-------~~~~~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                      ..+|||++|++++.+|+..+   .++.  ..       .+.++.....|.+.++   ++||+++++++++++|.+.+
T Consensus        95 ~~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~~lY~~~a~---~~Id~~~~~~eiv~~Ii~~L  168 (170)
T d1e6ca_          95 GTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAH---YVVDATQPPAAIVCELMQTM  168 (170)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCS---EEEETTSCHHHHHHHHHHHT
T ss_pred             ceeEEEecCchhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHcCC---EEEcCCCCHHHHHHHHHHHc
Confidence            36999999999999997532   1111  11       1222222345655544   78999999999999998765

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.32  E-value=1e-11  Score=96.04  Aligned_cols=137  Identities=8%  Similarity=0.040  Sum_probs=75.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC----CCCCHHHHHHHHHHhHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ----SHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~----~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      ++|+|.|++||||||+|+.|.+...  ++  ..+..       .+..+......    ..............    ....
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~--~~--~~~~~-------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~   67 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNP--GF--YNINR-------DDYRQSIMAHEERDEYKYTKKKEGIVTGM----QFDT   67 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHST--TE--EEECH-------HHHHHHHTTSCCGGGCCCCHHHHHHHHHH----HHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC--CC--EEech-------HHHHHHHhcccchhhhhhhhhhhHHHHHH----HHHH
Confidence            5789999999999999999876542  22  22220       12222332221    12223222211111    1123


Q ss_pred             HHHHHhc---CCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHH
Q 025041          132 MEAKLKA---GTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKV  208 (259)
Q Consensus       132 i~~~l~~---g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv  208 (259)
                      +...+..   +..+|+|......-..        +.+..+......+..+|||++|++++.+|...|+.+..+.+..+++
T Consensus        68 ~~~~~~~~~~~~~vi~d~~~~~~~~~--------~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~  139 (152)
T d1ly1a_          68 AKSILYGGDSVKGVIISDTNLNPERR--------LAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSM  139 (152)
T ss_dssp             HHHHHTSCSSCCEEEECSCCCSHHHH--------HHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGCCCHHHHHHH
T ss_pred             HHHHHHhhccCCCcccccccCCHHHH--------HHHHHhhhhhccchhhhhcCCCHHHHHHHHHccCCCCCCHHHHHHH
Confidence            3344443   4568888655432111        1122222334567899999999999999998886544345666666


Q ss_pred             HHHHHhh
Q 025041          209 AQCYQML  215 (259)
Q Consensus       209 ~~~y~~l  215 (259)
                      .+.|+++
T Consensus       140 ~~~~~~~  146 (152)
T d1ly1a_         140 YKSMREY  146 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            6666654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.7e-11  Score=96.29  Aligned_cols=169  Identities=18%  Similarity=0.149  Sum_probs=80.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM  132 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i  132 (259)
                      .+|++|+|.|++||||||+|+.|+++|+..++......        ++.++.................  ..+  ....+
T Consensus        17 ~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~--------~d~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~   84 (195)
T d1x6va3          17 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD--------GDNIRQGLNKNLGFSPEDREEN--VRR--IAEVA   84 (195)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEEC--------HHHHTTTTTTTCCSSHHHHHHH--HHH--HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchh--------HHhhhcccccccchhhhHHHHH--HHH--HHHHH
Confidence            48999999999999999999999999988777655432        2222222111111111111000  001  11233


Q ss_pred             HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC-cc--hHHHHHHHH
Q 025041          133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER-YE--HLEFQRKVA  209 (259)
Q Consensus       133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~-~e--~~~~~~rv~  209 (259)
                      ......+..++.+........        ..+...+..........+++..+..+..+|...+... ..  .......+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (195)
T d1x6va3          85 KLFADAGLVCITSFISPYTQD--------RNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGID  156 (195)
T ss_dssp             HHHHHTTCEEEEECCCCCHHH--------HHHHHHHHHTTTCCEEEEEECC-----------------------------
T ss_pred             HHHHhcCCccccccccchHHH--------HHHHHHHHhccccccccccchhheeeehhhccchhhhhhhhhhhhhhhhhc
Confidence            444566777777643321111        1223333333444556667777777766665432111 00  011111112


Q ss_pred             HHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 025041          210 QCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD  242 (259)
Q Consensus       210 ~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~  242 (259)
                      ..|.... ...++||++ .|+||++++|.+.|.+
T Consensus       157 ~~~e~~~-~~dl~IdT~~~s~ee~~~~Il~~l~~  189 (195)
T d1x6va3         157 SEYEKPE-APELVLKTDSCDVNDCVQQVVELLQE  189 (195)
T ss_dssp             -CCCCCS-SCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred             cccCCCC-CCCEEEECCCCCHHHHHHHHHHHHHH
Confidence            2222211 234789986 6999999999988754

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=9.5e-11  Score=90.45  Aligned_cols=63  Identities=22%  Similarity=0.245  Sum_probs=37.2

Q ss_pred             CCEEEEEeCCHHHHHhhcCCCCCCc-----c-h----HHHHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHH
Q 025041          175 PDSVLYLDIPPEKAAERGGYGGERY-----E-H----LEFQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIV  240 (259)
Q Consensus       175 PdlvI~Ld~~~e~~~~R~~~R~d~~-----e-~----~~~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i  240 (259)
                      ....++++.++.++..|...+..+.     . .    ..........|.+.++   ++||++ .|++|++++|.+.|
T Consensus        95 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~d---~~Idt~~~s~ee~v~~Ii~~l  168 (169)
T d1kaga_          95 RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIAD---VTIRTDDQSAKVVANQIIHML  168 (169)
T ss_dssp             HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHCS---EEC-----CHHHHHHHHHHHH
T ss_pred             cceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHHHHhhhhhhccCC---EEEECCCCCHHHHHHHHHHHh
Confidence            4689999999999999876532111     0 1    1222333445655544   679984 69999999999876

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=6.5e-11  Score=95.01  Aligned_cols=165  Identities=16%  Similarity=0.134  Sum_probs=87.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEecCCCCChHH--------HHHHHHHhCCCCCCHHHHHHHHHHhH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWRFPDRTTSVG--------QMISAYLSNQSHLDDHTIHLLFSANR  125 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~~p~~~~~~g--------~~ir~~l~~~~~~~~~~~~ll~~a~r  125 (259)
                      |++|+|.||+||||||+++.|.+.+...++.+. .++.|..+..-|        +.+.+....+. +..+..   +..+.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~-f~e~~~---~~~~~   77 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGE-LLEWAE---IHGGL   77 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTC-EEEEEE---EGGGT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhhhcccc-cchhhh---cccCc
Confidence            789999999999999999999998864433332 344443221111        11111111110 000000   00000


Q ss_pred             --HHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchH
Q 025041          126 --WEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHL  202 (259)
Q Consensus       126 --~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~  202 (259)
                        +.. ...+...+..|..+++|-.+              +.+..+....+.|..++++..+++++.+|+..|+...+ .
T Consensus        78 ~~~g~~~~~~~~~~~~g~~~i~~~~~--------------~g~~~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg~~~~-e  142 (182)
T d1znwa1          78 HRSGTLAQPVRAAAATGVPVLIEVDL--------------AGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETA-D  142 (182)
T ss_dssp             EEEEEEHHHHHHHHHHTCCEEEECCH--------------HHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCH-H
T ss_pred             cccccccchhhhhhhcCCcccccccc--------------chhhhhhhcCcceeEEeeecccHHHHHHHhhhcCcchH-H
Confidence              000 11233344456666665322              22333344556676677777889999999988764322 2


Q ss_pred             HHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHH
Q 025041          203 EFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIV  240 (259)
Q Consensus       203 ~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i  240 (259)
                      +..+++..+-.++..   .+.+++|  .++|+.++++.++|
T Consensus       143 ~I~~Rl~~~~~e~~~~~~fD~vI~N--ddle~a~~~l~~iI  181 (182)
T d1znwa1         143 VIQRRLDTARIELAAQGDFDKVVVN--RRLESACAELVSLL  181 (182)
T ss_dssp             HHHHHHHHHHHHHHGGGGSSEEEEC--SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHhcCCEEEEC--cCHHHHHHHHHHHh
Confidence            344454433223221   3455554  37999999998876

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.19  E-value=2.4e-10  Score=93.76  Aligned_cols=72  Identities=15%  Similarity=0.179  Sum_probs=43.3

Q ss_pred             CCCCCEEEEEeCCHHHHHhhcCCC----CCCcchHHHHHHHHHH----HHh-hh---C-CCeEEEcCC-CCHHHHHHHHH
Q 025041          172 LLAPDSVLYLDIPPEKAAERGGYG----GERYEHLEFQRKVAQC----YQM-LR---D-SSWKIIDAC-QSIEDVEKQLK  237 (259)
Q Consensus       172 ~~~PdlvI~Ld~~~e~~~~R~~~R----~d~~e~~~~~~rv~~~----y~~-l~---~-~~~~vIDa~-~s~eev~~~I~  237 (259)
                      .+.++..+|+.++++....|...+    .......+..+.+...    |.. ..   . .+.++||++ .++|||+++|.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~Rd~~D~~r~~~pL~~~~~~i~Idts~~s~eeV~~~I~  216 (223)
T d1q3ta_         137 LPQAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKIK  216 (223)
T ss_dssp             GGGCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCHHHHHHHHH
T ss_pred             ccccchhhhcccchhhhhhhhhhhhhhcccccchHHHHHHHHHHHHHhhhcccCCCccCCCeEEEECCCCCHHHHHHHHH
Confidence            466789999999999887664321    1111112233333222    111 11   1 235788865 79999999999


Q ss_pred             HHHHHH
Q 025041          238 EIVLDQ  243 (259)
Q Consensus       238 ~~i~~~  243 (259)
                      +.|...
T Consensus       217 ~~i~kk  222 (223)
T d1q3ta_         217 AEAEKR  222 (223)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            998764

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.15  E-value=9.2e-10  Score=86.24  Aligned_cols=36  Identities=22%  Similarity=0.274  Sum_probs=31.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE   87 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~   87 (259)
                      ..+|.+|+|+|++||||||+++.|+++|+..++...
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~   38 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSV   38 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCch
Confidence            358999999999999999999999999988766543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.15  E-value=3.7e-11  Score=94.20  Aligned_cols=29  Identities=28%  Similarity=0.257  Sum_probs=25.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE   87 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~   87 (259)
                      +.|+|+|++||||||+|+.|+++|   |++++
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l---~~~~i   33 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKS---GLKYI   33 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH---CCEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH---CCcEE
Confidence            568899999999999999999999   45554

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=99.13  E-value=1.3e-09  Score=79.78  Aligned_cols=153  Identities=22%  Similarity=0.320  Sum_probs=100.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKL  136 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~l  136 (259)
                      +|+++|||.+=|||++..|.+.|+   |+++.      ++.+ +.    ..++.      +.      .++++    ..+
T Consensus         2 liilegpdccfkstvaaklskelk---ypiik------gssf-el----aksgn------ek------lfehf----nkl   51 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELK---YPIIK------GSSF-EL----AKSGN------EK------LFEHF----NKL   51 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHT---CCEEE------CCCH-HH----HHHCH------HH------HHHHH----HHH
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhc---Cceec------Cchh-hh----hhccC------HH------HHHHH----Hhh
Confidence            799999999999999999999995   45442      2222 11    11110      11      11222    124


Q ss_pred             hcCCeEEEcccccchhhhhcC-C---CCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCc-chHHHHHHHHHH
Q 025041          137 KAGTTLIVDRYSYSGVAFSSA-K---GIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERY-EHLEFQRKVAQC  211 (259)
Q Consensus       137 ~~g~~VI~DR~~~s~~ay~~~-~---gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~-e~~~~~~rv~~~  211 (259)
                      +..+.||.|||+||.++|..- +   -+....++-++......--++||.++|.++.+|+.-|+|.| |..+ ...+.+.
T Consensus        52 adednviidrfvysnlvyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvrgdeyiegkd-idsilel  130 (164)
T d2axpa1          52 ADEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKD-IDSILEL  130 (164)
T ss_dssp             TTCCSEEEESCHHHHHHHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHTCSSCCSSH-HHHHHHH
T ss_pred             ccccceeeehhhhhhhHHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHHHHHhccccccccccCC-HHHHHHH
Confidence            456789999999999999752 1   22344455455555666689999999999999998777765 3222 2345567


Q ss_pred             HHhhh-CCC--eEEEcC-CCCHHHHHHHHHHHH
Q 025041          212 YQMLR-DSS--WKIIDA-CQSIEDVEKQLKEIV  240 (259)
Q Consensus       212 y~~l~-~~~--~~vIDa-~~s~eev~~~I~~~i  240 (259)
                      |.+.. +..  ....|+ ..+-+|+++.|.=.+
T Consensus       131 yrevmsnaglhtyswdtgqwssdeiakdiiflv  163 (164)
T d2axpa1         131 YREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLV  163 (164)
T ss_dssp             HHHHHHTCSSCEEEEETTTSCHHHHHHHHHHHH
T ss_pred             HHHHHhcCCceeeecccCCcchHHhhhheeEee
Confidence            77643 333  345676 579999999987544

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=6.2e-10  Score=91.44  Aligned_cols=167  Identities=17%  Similarity=0.188  Sum_probs=95.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCe--E-EEEecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHS--V-ELWRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLFS  122 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~--v-~~~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~~  122 (259)
                      +|++|+|.||+||||||+++.|.+.....++.  + .+++.|..+..-        -+.+.+....+. +-.+.   .+.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~-flE~~---~~~   76 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDA-FLEHA---EVF   76 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTC-EEEEE---EET
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhh-heeEE---EEC
Confidence            58999999999999999999999987643333  2 234555422110        122222222221 00000   000


Q ss_pred             HhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcch
Q 025041          123 ANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEH  201 (259)
Q Consensus       123 a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~  201 (259)
                      .+.|.. ...+...+.+|.+||+|-.+.              -+..+....+.+-.++++-.+.+++.+|+..|+..-+ 
T Consensus        77 g~~YGt~~~~v~~~~~~g~~~ildid~~--------------g~~~lk~~~~~~~~ifi~pps~~~l~~RL~~Rg~~~~-  141 (205)
T d1s96a_          77 GNYYGTSREAIEQVLATGVDVFLDIDWQ--------------GAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSE-  141 (205)
T ss_dssp             TEEEEEEHHHHHHHHTTTCEEEEECCHH--------------HHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCH-
T ss_pred             CceeccccchHHHHHhcCCceeecCcHH--------------HHHHHHhhhcccceeeeeccchHHHHHHHHhcCCchH-
Confidence            000111 234566678888888874332              1223333455565666677777788899987754322 


Q ss_pred             HHHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHH
Q 025041          202 LEFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVL  241 (259)
Q Consensus       202 ~~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~  241 (259)
                      .+...++..+..++..   .+.+++|.  ++++.+++|.++|.
T Consensus       142 ~~i~~Rl~~a~~E~~~~~~fD~vIvNd--dl~~a~~el~~iI~  182 (205)
T d1s96a_         142 EVIAKRMAQAVAEMSHYAEYDYLIVND--DFDTALTDLKTIIR  182 (205)
T ss_dssp             HHHHHHHHHHHHHHTTGGGSSEEEECS--SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEECc--CHHHHHHHHHHHHH
Confidence            2445566665555432   45677753  69999999999885

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.07  E-value=4.3e-09  Score=85.87  Aligned_cols=67  Identities=18%  Similarity=0.243  Sum_probs=43.3

Q ss_pred             CCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH-----HHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC-----YQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       173 ~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~-----y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                      ...|.+|++++|+++..+|+..|+. +...++..++..+     ....++   ++|++++++++..++|.+.|...
T Consensus       122 ~~~d~ii~v~~~~~~r~~R~~~R~~-~s~e~~~~~~~~Q~~~~~k~~~aD---~vI~N~~~l~~~~~~l~~~i~~i  193 (205)
T d1jjva_         122 ALCDRILVVDVSPQTQLARSAQRDN-NNFEQIQRIMNSQVSQQERLKWAD---DVINNDAELAQNLPHLQQKVLEL  193 (205)
T ss_dssp             GGCSEEEEEECCHHHHHHHHC------CHHHHHHHHHHSCCHHHHHHHCS---EEEECCSCHHHHHHHHHHHHHHH
T ss_pred             hhhhheeeecchHHHHHHHHHhcCC-chHHHHHHHHHhCCCHHHHHHhCC---EEEECCCChHHHHHHHHHHHHHH
Confidence            3468999999999999999988732 3333444444332     122233   67888899988888777766654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.05  E-value=1.1e-09  Score=88.02  Aligned_cols=66  Identities=17%  Similarity=0.165  Sum_probs=44.4

Q ss_pred             CCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHH-----HHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQ-----CYQMLRDSSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       173 ~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~-----~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      ...|.+||+++|+++..+|+..|+. +...++..+...     .....++   ++||++.+++++.++|.+++.+
T Consensus       118 ~~~d~vI~v~a~~e~r~~Rl~~R~~-~~~~~~~~~~~~q~~~~~~~~~aD---~vI~N~~s~~~l~~~v~~il~~  188 (191)
T d1uf9a_         118 GRLHGTLLVAAPLEERVRRVMARSG-LSREEVLARERAQMPEEEKRKRAT---WVLENTGSLEDLERALKAVLAE  188 (191)
T ss_dssp             GGSSEEEEECCCHHHHHHHHHTTTC-CTTHHHHHHHTTSCCHHHHHHHCS---EEECCSSHHHHHHHHHHHHHHS
T ss_pred             ccceeEEEEecchhhHHHHHHhccc-chHHHHHHHHHhCCCHHHHHHhCC---EEEECCCCHHHHHHHHHHHHHH
Confidence            3468999999999999999887632 222233222211     1122333   5799999999999999887754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=5.7e-10  Score=89.10  Aligned_cols=103  Identities=15%  Similarity=0.093  Sum_probs=65.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM  131 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~  131 (259)
                      .+++.+|++.|++||||||+++.|.+.+   |+..+  +.        +.+    ..     .  .         .....
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~~---~~~~i--~~--------D~~----~~-----~--~---------~~~~~   57 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVSA---GYVHV--NR--------DTL----GS-----W--Q---------RCVSS   57 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGGG---TCEEE--EH--------HHH----CS-----H--H---------HHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhc---CCEEE--ch--------HHH----HH-----H--H---------HHHHH
Confidence            3578999999999999999999886654   33222  21        111    10     0  0         00123


Q ss_pred             HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC
Q 025041          132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG  195 (259)
Q Consensus       132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R  195 (259)
                      ++..+.+|..||+|....+.-. .       ..+..+......+-.+|+|++|.+++.+|...|
T Consensus        58 ~~~~l~~g~~vIiD~t~~~~~~-R-------~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R  113 (172)
T d1yj5a2          58 CQAALRQGKRVVIDNTNPDVPS-R-------ARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR  113 (172)
T ss_dssp             HHHHHHTTCCEEEESCCCSHHH-H-------HHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred             HHHHHHCCCCceeeCcCCCHHH-H-------HHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHh
Confidence            4567788999999976543211 1       222233333455778999999999999998765

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=2.3e-09  Score=86.64  Aligned_cols=170  Identities=16%  Similarity=0.210  Sum_probs=90.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEE-EEecCCCCChHH--------HHHHHHHhCCCCCCHHHHHHHHHHhHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVE-LWRFPDRTTSVG--------QMISAYLSNQSHLDDHTIHLLFSANRW  126 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~-~~~~p~~~~~~g--------~~ir~~l~~~~~~~~~~~~ll~~a~r~  126 (259)
                      .|+|.||+||||||+++.|.+.+... ...+. .++.|..+..-|        +.+.++...+. +-.+.   .+.-..+
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~-~~e~~---~~~~~~Y   77 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGD-FIEHA---EFSGNLY   77 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC-EEEEE---EETTEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhh-heeee---EEcCcce
Confidence            48899999999999999999998642 11122 234443221111        11111111110 00000   0000000


Q ss_pred             HH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHH
Q 025041          127 EK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQ  205 (259)
Q Consensus       127 ~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~  205 (259)
                      .. .+.+...+..|.+++++-.+.              .+..+....+.|..++++..+.+++.+|+..|+... ..+..
T Consensus        78 g~~~~~v~~~~~~g~~~~~~~~~~--------------~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R~~~~-~e~i~  142 (190)
T d1lvga_          78 GTSKEAVRAVQAMNRICVLDVDLQ--------------GVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTET-EESLA  142 (190)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECCHH--------------HHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSC-HHHHH
T ss_pred             ecccchhhhhhcCCCceeecchHh--------------hhhhhhhccccceEEEEecchHHHHHHHHhhccccc-hHHHH
Confidence            00 123455566777777764321              222333445677677777777889999997664332 23444


Q ss_pred             HHHHHHHHhhh---C---CCeEEEcCCCCHHHHHHHHHHHHHHHHhhh
Q 025041          206 RKVAQCYQMLR---D---SSWKIIDACQSIEDVEKQLKEIVLDQVTAC  247 (259)
Q Consensus       206 ~rv~~~y~~l~---~---~~~~vIDa~~s~eev~~~I~~~i~~~l~~~  247 (259)
                      .++...-.++.   .   .+++++|.  +.|+.+++|.++|.+.+...
T Consensus       143 ~rl~~~~~~~~~~~~~~~fd~iI~N~--dle~a~~~l~~iI~~~~~k~  188 (190)
T d1lvga_         143 KRLAAARTDMESSKEPGLFDLVIIND--DLDKAYATLKQALSEEIKKA  188 (190)
T ss_dssp             HHHHHHHHHTTGGGSTTTCSEEEECS--SHHHHHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHHHhhhhcCCCCEEEECc--CHHHHHHHHHHHHHHHHhcc
Confidence            55544333332   1   23555553  69999999999998877653

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=8.1e-09  Score=83.93  Aligned_cols=74  Identities=15%  Similarity=0.160  Sum_probs=41.9

Q ss_pred             CCCCCEEEEEeCCHHHHHhhcCCC----CCCcc-hHHHHH----HHHHHHHhhh----CCCeEEEcCC-CCHHHHHHHHH
Q 025041          172 LLAPDSVLYLDIPPEKAAERGGYG----GERYE-HLEFQR----KVAQCYQMLR----DSSWKIIDAC-QSIEDVEKQLK  237 (259)
Q Consensus       172 ~~~PdlvI~Ld~~~e~~~~R~~~R----~d~~e-~~~~~~----rv~~~y~~l~----~~~~~vIDa~-~s~eev~~~I~  237 (259)
                      .+.+...++....++....|...+    ..... ..+...    +....|.+..    ....++||++ .++|||+++|.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~Id~s~~s~eeV~~~I~  215 (225)
T d1ckea_         136 FPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKAL  215 (225)
T ss_dssp             CTTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETTTSCHHHHHHHHH
T ss_pred             cccccccccccchhhhcccccccccccccccchhhhHHHHHHHHHHHhhccccCCCcccCCEEEEECCCCCHHHHHHHHH
Confidence            456778999999998887665421    11111 111111    1122222221    1345789976 69999999999


Q ss_pred             HHHHHHHh
Q 025041          238 EIVLDQVT  245 (259)
Q Consensus       238 ~~i~~~l~  245 (259)
                      +.|.+-|.
T Consensus       216 ~~I~~Kl~  223 (225)
T d1ckea_         216 QYARQKLA  223 (225)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHC
Confidence            99987653

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2.4e-08  Score=81.48  Aligned_cols=70  Identities=14%  Similarity=0.207  Sum_probs=48.4

Q ss_pred             CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH-----HhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhh
Q 025041          174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY-----QMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTAC  247 (259)
Q Consensus       174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y-----~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~  247 (259)
                      ..|.+|++++|+++..+|+..|+ ..+..++..++..++     ...++   ++||++.++|+..++|.++...++.-.
T Consensus       124 ~~~~iI~V~a~~e~r~~R~~~R~-~~~~~~~~~~~~~Q~~~~~k~~~aD---~vI~N~~~le~l~~~v~~l~~~~l~~~  198 (208)
T d1vhta_         124 KANRVLVVDVSPETQLKRTMQRD-DVTREHVEQILAAQATREARLAVAD---DVIDNNGAPDAIASDVARLHAHYLQLA  198 (208)
T ss_dssp             GCSEEEEEECCHHHHHHHHHHHH-TCCHHHHHHHHHHSCCHHHHHHHCS---EEEECSSCTTSHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCHHHHHHHHHHhh-hhhHHHHHHHHHhCCCHHHHHHhCC---EEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999988762 233334444544422     11223   678999999999999888777666543

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=2.5e-09  Score=85.97  Aligned_cols=166  Identities=18%  Similarity=0.209  Sum_probs=88.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEE-EEecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHHHHhH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVE-LWRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLFSANR  125 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~-~~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~~a~r  125 (259)
                      +.|+|.||+||||||+++.|.+.+... .+.+. .++.|..+..-        .+.+......+. +-.+.   .+..+.
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~-f~e~~---~~~g~~   77 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNE-FIEWA---QFSGNY   77 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTC-EEEEE---EETTEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhccc-ceeee---EEccce
Confidence            458999999999999999999987542 12222 23444321110        111222222110 00000   000000


Q ss_pred             HHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhcc-CCCCCEEEEEeCCHHHHHhhcCCCCCCcchHH
Q 025041          126 WEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIG-LLAPDSVLYLDIPPEKAAERGGYGGERYEHLE  203 (259)
Q Consensus       126 ~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~-~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~  203 (259)
                      |.. ...+...+..|.++|+|..+.              .+..+... ...|..+|++..+.+++.+|+..|+...+ .+
T Consensus        78 Yg~~~~~i~~~~~~g~~~i~~~~~~--------------~~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg~~~~-~~  142 (186)
T d1gkya_          78 YGSTVASVKQVSKSGKTCILDIDMQ--------------GVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETE-ES  142 (186)
T ss_dssp             EEEEHHHHHHHHHHTSEEEEECCHH--------------HHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHSCSCH-HH
T ss_pred             eecchhhHHHHhcCCCeEEecchHH--------------HHHHHHHhhcccceEEEecCCcHHHHHHHHHhhccchh-HH
Confidence            000 133455566788888875432              12222211 12466788899999999999987754322 24


Q ss_pred             HHHHHHHHHHhhh--C---CCeEEEcCCCCHHHHHHHHHHHHHH
Q 025041          204 FQRKVAQCYQMLR--D---SSWKIIDACQSIEDVEKQLKEIVLD  242 (259)
Q Consensus       204 ~~~rv~~~y~~l~--~---~~~~vIDa~~s~eev~~~I~~~i~~  242 (259)
                      ..+++..+..++.  .   .+.+++|  .++|+.+++|.++|..
T Consensus       143 I~~Rl~~~~~e~~~~~~~~fd~vI~N--~dle~a~~~l~~iI~~  184 (186)
T d1gkya_         143 INKRLSAAQAELAYAETGAHDKVIVN--DDLDKAYKELKDFIFA  184 (186)
T ss_dssp             HHHHHHHHHHHHHHHTTTCSSEEEEC--SSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhhcCCCEEEEC--cCHHHHHHHHHHHHHh
Confidence            4456554443332  1   2345554  4799999999988753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.85  E-value=4e-09  Score=83.97  Aligned_cols=39  Identities=28%  Similarity=0.441  Sum_probs=33.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      ..+.+|.|.|++||||||+|+.|++.++..+..+.....
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~   58 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM   58 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhccccccceeccc
Confidence            345678899999999999999999999998888766554

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.5e-08  Score=82.53  Aligned_cols=28  Identities=25%  Similarity=0.417  Sum_probs=25.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      |.+|+|.|++||||||+++.|++.|+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~   29 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQN   29 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            6789999999999999999999999754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=1.6e-07  Score=75.24  Aligned_cols=36  Identities=31%  Similarity=0.447  Sum_probs=32.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      |.+|++.|+|||||||+++.|+++++..|+++..+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~   37 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN   37 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEc
Confidence            568999999999999999999999999888876654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.9e-06  Score=66.48  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=23.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .++|+|.||+||||+|+++.|.+....
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~~   29 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKHPD   29 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCCc
Confidence            467999999999999999999987643

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=3.7e-07  Score=70.44  Aligned_cols=35  Identities=23%  Similarity=0.300  Sum_probs=31.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++|+|.|++||||||+++.|.++|..+|+.+....
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~   37 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK   37 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEec
Confidence            58999999999999999999999999999876543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.07  E-value=4.7e-06  Score=71.10  Aligned_cols=37  Identities=8%  Similarity=0.121  Sum_probs=29.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      |.++|.|.|++||||||+++.|.+.|...|.++..+.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~   39 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIE   39 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEe
Confidence            5569999999999999999999999998888765544

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.03  E-value=2.4e-06  Score=66.34  Aligned_cols=35  Identities=17%  Similarity=0.187  Sum_probs=31.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++|.|.|.+||||||+++.|..+|..+|+++..+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik   36 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   36 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            47899999999999999999999999999887654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.2e-05  Score=61.96  Aligned_cols=32  Identities=28%  Similarity=0.330  Sum_probs=28.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE   87 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~   87 (259)
                      +.|.|.|++|+||||++..+++.|...|..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~   33 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD   33 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence            45899999999999999999999987776654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.72  E-value=4.1e-05  Score=62.06  Aligned_cols=53  Identities=25%  Similarity=0.431  Sum_probs=38.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAY  105 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~  105 (259)
                      .++.+|.|.||.|+||||.+.+|+.++...|.+|..+..-.+.....+.++.+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~   56 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEW   56 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhc
Confidence            46789999999999999999999999988888876654322222223455444

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.66  E-value=4.8e-05  Score=61.95  Aligned_cols=39  Identities=26%  Similarity=0.425  Sum_probs=34.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..++.+|+|.||.|+||||.+.+|+.++..+|.+|-.+.
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit   46 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA   46 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEe
Confidence            357889999999999999999999999988888876554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.58  E-value=7.3e-05  Score=60.54  Aligned_cols=39  Identities=31%  Similarity=0.394  Sum_probs=33.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .++.+|+|.||.|+||||.+.+|+.++..+|.++..+.-
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~   46 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA   46 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence            356789999999999999999999999988998876553

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.57  E-value=6.6e-05  Score=60.99  Aligned_cols=38  Identities=21%  Similarity=0.347  Sum_probs=29.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++.+|+|.||.|+||||.+.+|+.++...|.++-.+.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit   47 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVG   47 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEE
Confidence            56789999999999999999999999998888876554

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=8.1e-05  Score=60.42  Aligned_cols=38  Identities=26%  Similarity=0.379  Sum_probs=33.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++.+|+|.||.|+||||.+.+|+.++...|.+|..+.
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit   44 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA   44 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            46789999999999999999999999988888876654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.45  E-value=4e-05  Score=59.17  Aligned_cols=26  Identities=19%  Similarity=0.345  Sum_probs=23.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      -|+|+||+||||||+++.+...+...
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            48999999999999999999999753

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=0.00026  Score=56.57  Aligned_cols=163  Identities=11%  Similarity=0.107  Sum_probs=80.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEE-EEecCCCCCh---------HHHHHHHHHhCCCCCCHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVE-LWRFPDRTTS---------VGQMISAYLSNQSHLDDHTIHLLFS  122 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~-~~~~p~~~~~---------~g~~ir~~l~~~~~~~~~~~~ll~~  122 (259)
                      ..+.|+|.||   ||+|+.+.|.+.+... ++.+. .++.|..+..         --+.+++...++. +-.+.   .+.
T Consensus         8 ~~Rpivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~-fiE~~---~~~   80 (199)
T d1kjwa2           8 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHK-FIEAG---QYN   80 (199)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTC-EEEEE---EET
T ss_pred             CCCCEEEECc---CHHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhcc-ceeee---eec
Confidence            4456777776   6999999999987643 23333 3444432111         0122333333221 00000   000


Q ss_pred             HhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcch
Q 025041          123 ANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEH  201 (259)
Q Consensus       123 a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~  201 (259)
                      .+.|.. ...+...+++|.++|+|-.+.              -+..+....+.| ++|||..|.-..+.|+..|..   .
T Consensus        81 g~~YGt~~~~i~~~~~~gk~~lldid~~--------------g~~~lk~~~~~~-i~IfI~pps~e~l~~l~kr~~---~  142 (199)
T d1kjwa2          81 SHLYGTSVQSVREVAEQGKHCILDVSAN--------------AVRRLQAAHLHP-IAIFIRPRSLENVLEINKRIT---E  142 (199)
T ss_dssp             TEEEEEEHHHHHHHHHTTCEEEECCCTT--------------HHHHHHHTTCCC-EEEEECCSSHHHHHHHCTTSC---H
T ss_pred             CCccceeeeEEEehhcCCCcccccccch--------------HHhhhhhhccce-eEEeeccccHHHHHhhhcccc---H
Confidence            000111 234566778899999874332              122222333444 688887764444455554432   1


Q ss_pred             HHHHHHHHHHHH---hhhC-CCeEEEcCCCCHHHHHHHHHHHHHHH
Q 025041          202 LEFQRKVAQCYQ---MLRD-SSWKIIDACQSIEDVEKQLKEIVLDQ  243 (259)
Q Consensus       202 ~~~~~rv~~~y~---~l~~-~~~~vIDa~~s~eev~~~I~~~i~~~  243 (259)
                      .+..+++..+..   ++.+ .+.+++|  .+.++.+++|.++|.+.
T Consensus       143 ~~i~~r~~~~~~~e~~~~~~fd~vI~N--ddle~a~~~l~~iI~~~  186 (199)
T d1kjwa2         143 EQARKAFDRATKLEQEFTECFSAIVEG--DSFEEIYHKVKRVIEDL  186 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGCSEEECC--SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccCCEEEEC--cCHHHHHHHHHHHHHHh
Confidence            223333333221   1222 3455554  46999999999887653

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.0001  Score=63.21  Aligned_cols=39  Identities=21%  Similarity=0.226  Sum_probs=31.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh--CCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG--LGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~--~g~~v~~~~   90 (259)
                      ...+.+|.|.|++||||||+|+.|++.|..  .+..|..+.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is  117 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELIT  117 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEe
Confidence            356789999999999999999999999974  356666544

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=6.8e-05  Score=64.88  Aligned_cols=36  Identities=17%  Similarity=0.072  Sum_probs=32.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE   87 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~   87 (259)
                      ..+...|.|.|+|||||||+++.|..++...|.++-
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~va   86 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA   86 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCcee
Confidence            356889999999999999999999999998888763

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.37  E-value=5.5e-05  Score=62.21  Aligned_cols=29  Identities=28%  Similarity=0.322  Sum_probs=25.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..++.|.+.|||||||||+|+.|+..+..
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~~~~   58 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEETQG   58 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            45777999999999999999999998854

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.33  E-value=0.00011  Score=59.30  Aligned_cols=33  Identities=30%  Similarity=0.381  Sum_probs=26.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      ++|+|.|+.||||||+++.|.+++.. +..+..+
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~~-~~~~~iv   33 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLED-NYKVAYV   33 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhh-CCeEEEE
Confidence            47999999999999999999988864 4455444

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.33  E-value=9e-05  Score=63.97  Aligned_cols=36  Identities=31%  Similarity=0.416  Sum_probs=32.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE   87 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~   87 (259)
                      ..+...|.|+|+||+||||+++.|.+++...|.++-
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~va   83 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVA   83 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCcee
Confidence            356789999999999999999999999988888864

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.24  E-value=6.3e-05  Score=61.39  Aligned_cols=24  Identities=29%  Similarity=0.559  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ++|+|+|+.||||||+|+.|++.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            579999999999999999998866

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.19  E-value=9.8e-05  Score=59.98  Aligned_cols=33  Identities=24%  Similarity=0.216  Sum_probs=25.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      +-+.|.||||+||||+|+.|+++++.   ....+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~---~~~~~~~   68 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQT---NIHVTSG   68 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTC---CEEEEET
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCC---CcccccC
Confidence            34779999999999999999999854   4444443

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.08  E-value=0.00077  Score=54.63  Aligned_cols=38  Identities=16%  Similarity=0.069  Sum_probs=29.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~   90 (259)
                      ..+..+.|.||+|+||||+++.|++.+... +..++...
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~   79 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN   79 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEec
Confidence            355678999999999999999999999653 44444444

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.00034  Score=56.95  Aligned_cols=36  Identities=17%  Similarity=0.003  Sum_probs=28.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      ...+.++|.||+|+||||++..|+++++   ..+..+..
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~~---~~~~~~~~   85 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQELG---YDILEQNA   85 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHTT---CEEEEECT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHH---hhhhcccc
Confidence            3456789999999999999999999884   45554443

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.04  E-value=0.00023  Score=60.30  Aligned_cols=29  Identities=14%  Similarity=0.206  Sum_probs=25.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .++.+|.|.|+.||||||++..|.+.|..
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~   53 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLME   53 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHH
Confidence            45788999999999999999999888754

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.93  E-value=0.00023  Score=57.72  Aligned_cols=34  Identities=21%  Similarity=0.168  Sum_probs=26.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP   92 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p   92 (259)
                      +-+.|.||||+||||+|+.+++.+.   ++...+...
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~---~~~~~~~~~   69 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELG---VNLRVTSGP   69 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT---CCEEEEETT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC---CCeEeccCC
Confidence            3467899999999999999999884   444544433

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00052  Score=54.17  Aligned_cols=35  Identities=23%  Similarity=0.298  Sum_probs=31.6

Q ss_pred             cEEEEEcCC-CCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGLD-RCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~d-GSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +.+.|+|.. |+||||++..|+..|..+|++|..+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            568899996 99999999999999999999987654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.87  E-value=0.00036  Score=56.27  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=23.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +-+.|.||+|+||||+++.+++.+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            45789999999999999999998864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.00048  Score=56.51  Aligned_cols=29  Identities=24%  Similarity=0.393  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.||+||||||+.+.+.--+.
T Consensus        23 i~~Gei~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          23 IHEGEFVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            35899999999999999999999976553

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.00051  Score=55.15  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=22.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      +.|.||+|+||||+|+.|++.+...
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             EEEECCCCCCchhhHHHHHHHHhcc
Confidence            6789999999999999999998753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.68  E-value=0.00078  Score=55.47  Aligned_cols=33  Identities=21%  Similarity=0.183  Sum_probs=26.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      .=|.|.||+|+|||++++.|+..++   .+++.+..
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~~---~~~~~i~~   73 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEESN---FPFIKICS   73 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT---CSEEEEEC
T ss_pred             eEEEEECcCCCCHHHHHHHHhhccc---cccccccc
Confidence            3478899999999999999999884   45555543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.0011  Score=48.58  Aligned_cols=37  Identities=19%  Similarity=0.189  Sum_probs=31.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh-C-CCeEEEE
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG-L-GHSVELW   89 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~-~-g~~v~~~   89 (259)
                      ++|..|+|+|.+||||||+|..|...|.. . |.++..+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll   42 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIF   42 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEEC
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEe
Confidence            57899999999999999999999999976 3 4555544

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00046  Score=56.91  Aligned_cols=29  Identities=14%  Similarity=0.265  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-.|+|.|++||||||+++.|...+.
T Consensus        26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          26 IKQGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            45899999999999999999999987665

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.64  E-value=0.0012  Score=53.09  Aligned_cols=38  Identities=18%  Similarity=0.232  Sum_probs=33.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+|.++.|.|++|+||||++..++......|..+..+.
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is   61 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFA   61 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceee
Confidence            57899999999999999999999999877777776654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.00099  Score=55.25  Aligned_cols=34  Identities=15%  Similarity=-0.011  Sum_probs=27.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++-|.+.||+|+|||++++.|++.++   .+++.++
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~~---~~~~~i~   77 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEAK---VPFFTIS   77 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHT---CCEEEEC
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHcC---CCEEEEE
Confidence            345577999999999999999999884   4555544

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.63  E-value=0.00052  Score=56.59  Aligned_cols=29  Identities=17%  Similarity=0.326  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.+++|.|++||||||+++.|..-+.
T Consensus        25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            46899999999999999999999987664

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.00059  Score=54.78  Aligned_cols=24  Identities=29%  Similarity=0.210  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -+.|.||+|+||||+++.+++++.
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l~   58 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKELY   58 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHHHc
Confidence            377999999999999999999874

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00056  Score=56.71  Aligned_cols=29  Identities=21%  Similarity=0.310  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -.+|-+++|.|++||||||+++.|...+.
T Consensus        37 i~~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          37 LRPGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            46899999999999999999999977664

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.60  E-value=0.0005  Score=56.14  Aligned_cols=26  Identities=15%  Similarity=0.027  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .++.|.||+|+||||+++.+++.|..
T Consensus        47 ~~l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          47 MIYGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             EEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             eEEEeECCCCCCHHHHHHHHHHHHHh
Confidence            34667899999999999999999864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.59  E-value=0.00057  Score=56.75  Aligned_cols=29  Identities=24%  Similarity=0.358  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -.+|-+|+|.|++||||||+++.|...+.
T Consensus        38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          38 IPAGKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcccC
Confidence            46899999999999999999999977664

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.56  E-value=0.00065  Score=57.81  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=22.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +.-|.|.||+|+|||.+|+.|++.+..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~~   75 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLANA   75 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CceEEEECCCCCCHHHHHHHHhhcccc
Confidence            345667899999999999999998853

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.55  E-value=0.0011  Score=58.50  Aligned_cols=40  Identities=15%  Similarity=0.173  Sum_probs=31.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP   92 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p   92 (259)
                      .+.-+|+|.||.||||||....+.++++..+..++.+..|
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdP  195 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP  195 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccC
Confidence            3456799999999999999999999997656666655544

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.53  E-value=0.0013  Score=54.27  Aligned_cols=33  Identities=18%  Similarity=0.008  Sum_probs=26.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++-|.|.||+|+|||++++.|+..+   |.++..++
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~---~~~~~~i~   74 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEA---RVPFITAS   74 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred             CceEEEecCCCCChhHHHHHHHHHc---CCCEEEEE
Confidence            3458899999999999999999877   45555544

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.53  E-value=0.0006  Score=55.81  Aligned_cols=29  Identities=17%  Similarity=0.196  Sum_probs=24.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|++||||||+.+.|.--+.
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~   56 (230)
T d1l2ta_          28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK   56 (230)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCcchhhHhccCCCC
Confidence            45899999999999999999998866543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00069  Score=55.80  Aligned_cols=29  Identities=14%  Similarity=0.096  Sum_probs=25.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -.+|-+++|.|++||||||+++.|.--+.
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          28 VPAGQIYGVIGASGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             ECSSCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCcc
Confidence            45899999999999999999999966543

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.0006  Score=55.27  Aligned_cols=25  Identities=32%  Similarity=0.563  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      -+.|.||+|+||||++..+++.+..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l~~   59 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESIFG   59 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhcC
Confidence            3679999999999999999998843

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.50  E-value=0.0006  Score=54.51  Aligned_cols=29  Identities=28%  Similarity=0.472  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.|+.||||||+.+.|...+.
T Consensus        24 i~~Gei~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          24 IEKGNVVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             EETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcccc
Confidence            35889999999999999999999977664

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.49  E-value=0.001  Score=57.93  Aligned_cols=38  Identities=18%  Similarity=0.175  Sum_probs=30.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP   92 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p   92 (259)
                      .++++.++|.||||+||||+|..|+..++   .+++.++.+
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s  188 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLP  188 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSC
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECc
Confidence            35677999999999999999999999995   455544433

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.00075  Score=56.82  Aligned_cols=30  Identities=30%  Similarity=0.413  Sum_probs=26.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..+|-+++|.|+.||||||+++.|.-.+..
T Consensus        59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p   88 (281)
T d1r0wa_          59 IEKGEMLAITGSTGSGKTSLLMLILGELEA   88 (281)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCCcC
Confidence            468999999999999999999999876653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.43  E-value=0.0011  Score=51.12  Aligned_cols=29  Identities=24%  Similarity=0.287  Sum_probs=26.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+|-+|.+.|.-||||||+++.+++.|+.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            57889999999999999999999999854

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.002  Score=53.30  Aligned_cols=38  Identities=24%  Similarity=0.187  Sum_probs=34.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +.+++|.+.|=-|+||||++..|+..|..+|++|..++
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD   43 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS   43 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEe
Confidence            35789999999999999999999999999999987654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.41  E-value=0.00094  Score=54.92  Aligned_cols=29  Identities=31%  Similarity=0.455  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.||+||||||+.+.|.--+.
T Consensus        29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          29 IKDGEFLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            45889999999999999999999987664

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.40  E-value=0.00092  Score=55.01  Aligned_cols=28  Identities=29%  Similarity=0.510  Sum_probs=24.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+|-+++|.|++||||||+++.|.--+.
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            4789999999999999999999976554

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0011  Score=51.21  Aligned_cols=28  Identities=29%  Similarity=0.392  Sum_probs=25.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+|.++.|.|++|+||||++-.++-+..
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999987653

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.00097  Score=53.35  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=22.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhCC
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEGLG   83 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~~g   83 (259)
                      +.|.||+|+||||++..+++.+....
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~~~~   63 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIYGKN   63 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred             EEEECCCCCChhHHHHHHHHHhhcCC
Confidence            56899999999999999999986543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.32  E-value=0.00072  Score=55.30  Aligned_cols=29  Identities=21%  Similarity=0.213  Sum_probs=25.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -.+|-+++|.||+||||||+.+.|.--+.
T Consensus        23 i~~Ge~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          23 VESGEYFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            35889999999999999999999987653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.31  E-value=0.0015  Score=48.88  Aligned_cols=26  Identities=35%  Similarity=0.434  Sum_probs=22.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      |.+-.-|+|.|.+|+||||+.+.+..
T Consensus         2 m~ke~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           2 MTREMRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHhC
Confidence            45566799999999999999998865

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.26  E-value=0.00068  Score=56.34  Aligned_cols=29  Identities=17%  Similarity=0.367  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -.+|.+++|.|++||||||+++.|...+.
T Consensus        41 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          41 IEKGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            46899999999999999999998876554

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.23  E-value=0.0015  Score=52.80  Aligned_cols=28  Identities=29%  Similarity=0.345  Sum_probs=24.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+..|+|.|+.|+||||++..+++.++.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~   55 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNL   55 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCC
Confidence            4678999999999999999999988854

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.15  E-value=0.0015  Score=54.34  Aligned_cols=28  Identities=14%  Similarity=0.166  Sum_probs=24.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ..+|-+++|.|+.||||||+++.|.--+
T Consensus        25 i~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          25 ARAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            4589999999999999999999997644

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.14  E-value=0.0014  Score=53.79  Aligned_cols=29  Identities=31%  Similarity=0.476  Sum_probs=25.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.||.||||||+.+.|.-.+.
T Consensus        29 i~~Gei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          29 VPRGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            35899999999999999999999977664

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0037  Score=51.33  Aligned_cols=38  Identities=26%  Similarity=0.399  Sum_probs=34.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ...++|++.|=-|+||||++..|+..|...|++|..++
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD   55 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTT   55 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            45689999999999999999999999999999987654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.12  E-value=0.00082  Score=55.39  Aligned_cols=29  Identities=17%  Similarity=0.071  Sum_probs=25.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      -.+|-+++|.|++||||||+.+.|.--+.
T Consensus        28 i~~Ge~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          28 IENGERFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHcCcC
Confidence            35899999999999999999999987553

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.09  E-value=0.004  Score=51.15  Aligned_cols=39  Identities=15%  Similarity=0.200  Sum_probs=32.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh-hCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE-GLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~-~~g~~v~~~~   90 (259)
                      ..+|-+++|.|++|+||||++..++-.+- ..|.+|.++.
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s   71 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM   71 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEee
Confidence            35789999999999999999999998763 5688887654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.07  E-value=0.0019  Score=48.01  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|+|.|.+|+||||++++|..
T Consensus         2 kivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999864

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.0028  Score=52.51  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=26.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .++-|.+.||+|+|||++++.|+..++   .++..+.
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~---~~~~~~~   73 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIK   73 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTT---CEEEEEC
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhC---CcEEEEE
Confidence            445588999999999999999999984   4555443

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.00  E-value=0.0018  Score=53.14  Aligned_cols=24  Identities=21%  Similarity=0.236  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +++|.||.||||||+.+.|.--+.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            778999999999999999988664

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.91  E-value=0.0044  Score=49.60  Aligned_cols=34  Identities=18%  Similarity=0.006  Sum_probs=29.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      -++|.|++|+|||.++..++..+...++.+.++.
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~   71 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS   71 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhccCccceEEec
Confidence            3789999999999999999999988888877654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.89  E-value=0.0022  Score=53.04  Aligned_cols=29  Identities=17%  Similarity=0.432  Sum_probs=25.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-+++|.||.||||||+++.|.-.+.
T Consensus        27 v~~Gei~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          27 VNKGDVTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHCCCc
Confidence            45899999999999999999999977664

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0017  Score=52.97  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=23.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      .+|-+++|.|+.||||||+.+.|.-.
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            58999999999999999999998763

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.84  E-value=0.0026  Score=52.48  Aligned_cols=31  Identities=19%  Similarity=0.033  Sum_probs=24.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      +=|.+.||+|+|||++++.++..+.   .++..+
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~~---~~~~~i   69 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANETG---AFFFLI   69 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTT---CEEEEE
T ss_pred             ceeEEecCCCCCchHHHHHHHHHhC---CeEEEE
Confidence            3477889999999999999999874   444443

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.82  E-value=0.0026  Score=52.13  Aligned_cols=29  Identities=21%  Similarity=0.303  Sum_probs=25.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|-++.|.||.||||||+.+.|.-.+.
T Consensus        25 v~~Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          25 IEEGEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35899999999999999999999987664

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.81  E-value=0.0026  Score=51.72  Aligned_cols=25  Identities=24%  Similarity=0.433  Sum_probs=22.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .+|+..+|.|++|+||||+++.|..
T Consensus        93 l~~kt~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          93 LKGKISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             HSSSEEEEECSTTSSHHHHHHHHST
T ss_pred             hcCCeEEEECCCCCCHHHHHHhhcc
Confidence            4688999999999999999999854

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.79  E-value=0.0024  Score=49.77  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLL   76 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~   76 (259)
                      +.|+|.|.+|+||||+++.|.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhc
Confidence            469999999999999999996

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.0023  Score=50.85  Aligned_cols=26  Identities=31%  Similarity=0.425  Sum_probs=23.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      .+|.++.|.|++||||||++-.++..
T Consensus        32 ~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            57899999999999999999888654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.76  E-value=0.0025  Score=48.35  Aligned_cols=25  Identities=32%  Similarity=0.425  Sum_probs=21.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ++..-|+|.|.+|+||||+.++|..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3455689999999999999999854

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.71  E-value=0.003  Score=46.65  Aligned_cols=20  Identities=35%  Similarity=0.509  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||+.+.|..
T Consensus         3 I~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            77999999999999999876

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.0029  Score=47.35  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      |.-|+|.|.+|+||||+++.|..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45689999999999999999863

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.69  E-value=0.0073  Score=47.87  Aligned_cols=37  Identities=24%  Similarity=0.272  Sum_probs=32.2

Q ss_pred             CccEEEEE-cCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLE-GLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvie-G~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .|++|+|. +--|+||||++..|+..|...|++|..++
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD   38 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVD   38 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            36788888 56899999999999999999999987765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.65  E-value=0.0037  Score=47.40  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=20.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +-.-|+|.|.+||||||++++|..
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            445689999999999999998864

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.62  E-value=0.0039  Score=49.94  Aligned_cols=29  Identities=21%  Similarity=0.127  Sum_probs=25.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ..+|.++.|.|++||||||++-.++...-
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            35789999999999999999998877653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.54  E-value=0.0039  Score=46.96  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .-|+|.|++|+||||+++.|..
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            4589999999999999998854

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0041  Score=49.46  Aligned_cols=27  Identities=19%  Similarity=0.228  Sum_probs=23.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +.-+.|.||+|+||||++..+++.+..
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~~   50 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLLC   50 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhccc
Confidence            445888999999999999999999853

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.52  E-value=0.0036  Score=47.62  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|+|.|.+|+||||+++.|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999964

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0049  Score=49.24  Aligned_cols=28  Identities=25%  Similarity=0.043  Sum_probs=24.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      -.+|.++.|.|++|+||||++-.++...
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999998644

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.48  E-value=0.0083  Score=48.98  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=31.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +.|+|.|=-|+||||++-.|+..|...|++|..++
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID   36 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG   36 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence            46889999999999999999999999999987765

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.47  E-value=0.0036  Score=47.86  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999999964

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.45  E-value=0.0084  Score=47.11  Aligned_cols=38  Identities=16%  Similarity=0.145  Sum_probs=27.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHH-HhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSY-LEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~-l~~~g~~v~~~~   90 (259)
                      .+|.++.|.|++|+|||+++-.++.. +...+..+..+.
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s   62 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT   62 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccccc
Confidence            58899999999999999999776543 333344454433

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.43  E-value=0.0046  Score=48.16  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +.|+|.|.+|+||||+.+.|..
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999999975

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.42  E-value=0.0095  Score=50.53  Aligned_cols=34  Identities=18%  Similarity=0.098  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+.|.||+|+|||.+|+.|++.+-..+...+.++
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~   88 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID   88 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEe
Confidence            6789999999999999999999854334444443

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.011  Score=48.91  Aligned_cols=38  Identities=18%  Similarity=0.316  Sum_probs=33.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..|.++-|.|++|+||||+|-.++......|..+++++
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyid   89 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID   89 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            46799999999999999999999998888888877765

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.0067  Score=51.42  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+.|.||+|+|||.+|+.|++.+.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCcchhHHHHHHHHhhcc
Confidence            577999999999999999999985

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.0077  Score=48.61  Aligned_cols=27  Identities=26%  Similarity=0.199  Sum_probs=23.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +..+.|.||+|+||||+|..+++.+..
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            456789999999999999999999864

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.28  E-value=0.0051  Score=48.65  Aligned_cols=30  Identities=17%  Similarity=0.136  Sum_probs=26.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..+|.++.|.|++|+||||++-.++-..-.
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~~~   60 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQN   60 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            357899999999999999999999887743

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.0051  Score=46.75  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      -+|+|.|.+|+||||+++.|..
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4589999999999999999964

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.23  E-value=0.0046  Score=52.83  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=27.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP   92 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p   92 (259)
                      .-|+|.|+.||||||+.+.|...... ...++.+..+
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~-~~rivtiEd~  202 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDT  202 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCT-TCCEEEEESS
T ss_pred             CCEEEEeeccccchHHHHHHhhhccc-ccceeeccch
Confidence            34899999999999999999887764 4455555444

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.16  E-value=0.0059  Score=46.34  Aligned_cols=20  Identities=30%  Similarity=0.343  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||+++.|..
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            89999999999999999865

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.0037  Score=50.40  Aligned_cols=29  Identities=28%  Similarity=0.394  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV   86 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v   86 (259)
                      ++++|+|.-||||||+.+.|.+..  .|.++
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~--~~~ri   32 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ--HGYKI   32 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC--CCCCE
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC--CCCcE
Confidence            689999999999999999987753  35554

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.12  E-value=0.0059  Score=47.82  Aligned_cols=21  Identities=43%  Similarity=0.513  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|+|.|++|+||||+.++|..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999976

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.05  E-value=0.0081  Score=45.52  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=20.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLL   76 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~   76 (259)
                      +..-|+|.|.+|+||||++++|.
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHh
Confidence            45679999999999999998874

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.04  E-value=0.0068  Score=45.68  Aligned_cols=21  Identities=33%  Similarity=0.395  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|+|.|++|+||||+.+.|..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478899999999999998865

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.04  E-value=0.0045  Score=47.62  Aligned_cols=19  Identities=32%  Similarity=0.343  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLL   76 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~   76 (259)
                      |+|.|.+++||||+.+.|.
T Consensus         4 VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSE
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            8899999999999999884

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.03  E-value=0.0068  Score=45.67  Aligned_cols=21  Identities=29%  Similarity=0.332  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|+|.|.+|+||||+++++..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0085  Score=45.55  Aligned_cols=20  Identities=35%  Similarity=0.489  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||+++++..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999998865

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.019  Score=42.39  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=31.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ||.+-+|.||..|||||..=+...++...|..+..+.
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ik   37 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   37 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEe
Confidence            6888899999999999988888888888888877655

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.93  E-value=0.0076  Score=46.96  Aligned_cols=31  Identities=26%  Similarity=0.356  Sum_probs=24.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE   87 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~   87 (259)
                      -.|+=|.|.|++|+||||++-.|.+    .|+..+
T Consensus        12 ~~g~gvl~~G~sG~GKStlal~l~~----~g~~lv   42 (176)
T d1kkma_          12 IYGLGVLITGDSGVGKSETALELVQ----RGHRLI   42 (176)
T ss_dssp             ETTEEEEEECCTTSCHHHHHHHHHH----TTCEEE
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHH----cCCeEE
Confidence            3567788999999999999987765    355543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.93  E-value=0.0082  Score=45.95  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .+.-|+|.|.+|+||||+++.|..
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            456799999999999999999864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.91  E-value=0.0078  Score=45.98  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..|+|.|.+|+||||+++.|..
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4699999999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.89  E-value=0.0086  Score=47.42  Aligned_cols=25  Identities=28%  Similarity=0.194  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      -+++.|++|+|||++++.|+.++..
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHHHh
Confidence            4678899999999999999998864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.89  E-value=0.0062  Score=54.24  Aligned_cols=31  Identities=19%  Similarity=0.178  Sum_probs=25.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL   88 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~   88 (259)
                      +.-|.+.||+|||||-+|+.|++.++   .+.+.
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~---VPFv~   79 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLAN---APFIK   79 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT---CCEEE
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhC---CCEEE
Confidence            45688899999999999999999884   45443

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.89  E-value=0.017  Score=45.51  Aligned_cols=35  Identities=29%  Similarity=0.369  Sum_probs=29.9

Q ss_pred             cEEEEE-cCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLE-GLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvie-G~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ++|+|. |=-|+||||++..|+..|...|.+|..++
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD   37 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVD   37 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEe
Confidence            456666 77899999999999999999999987765

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.87  E-value=0.0078  Score=45.64  Aligned_cols=20  Identities=35%  Similarity=0.464  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||++..+..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            88999999999999998864

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0079  Score=45.62  Aligned_cols=21  Identities=33%  Similarity=0.385  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|+|.|.+|+||||+++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999999875

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0074  Score=46.40  Aligned_cols=21  Identities=24%  Similarity=0.181  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|+|.|.+|+||||++++|..
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            388999999999999988863

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.83  E-value=0.0081  Score=45.25  Aligned_cols=20  Identities=25%  Similarity=0.406  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |++.|.+|+||||+++.+..
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998865

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.83  E-value=0.0046  Score=48.32  Aligned_cols=31  Identities=26%  Similarity=0.274  Sum_probs=23.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE   87 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~   87 (259)
                      -.|.=|.|.|++|+||||++-.|.+    +|+..+
T Consensus        13 ~~g~gvli~G~sG~GKS~lal~l~~----~G~~lv   43 (177)
T d1knxa2          13 VFGVGVLLTGRSGIGKSECALDLIN----KNHLFV   43 (177)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHT----TTCEEE
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHH----cCCcee
Confidence            3566788899999999999988754    466543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.82  E-value=0.0029  Score=51.59  Aligned_cols=28  Identities=21%  Similarity=0.246  Sum_probs=22.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           52 DSRGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      .-+++..+|.|.+|+||||+++.|....
T Consensus        94 ~l~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          94 HFQDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             GGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             hhccceEEEECCCCccHHHHHHhhccHh
Confidence            3467888999999999999999996544

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.0083  Score=45.73  Aligned_cols=20  Identities=40%  Similarity=0.446  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||+++++..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998854

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.82  E-value=0.0038  Score=53.06  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=20.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l   79 (259)
                      |.|+|++|+||||+++.++.-|
T Consensus        31 vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHS
T ss_pred             EEEECCCCccHHHHHHHHHHhC
Confidence            7889999999999999999876

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.0084  Score=45.62  Aligned_cols=20  Identities=15%  Similarity=0.212  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||+++++..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0086  Score=45.47  Aligned_cols=21  Identities=14%  Similarity=0.245  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|+|.|.+|+||||+++.+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.0048  Score=46.81  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+++||||+.+.|..
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhC
Confidence            467799999999999999998843

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.0092  Score=44.98  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      |..-|+|.|.+|+||||+++.+..
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHHh
Confidence            445688999999999999999864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.72  E-value=0.01  Score=50.54  Aligned_cols=25  Identities=32%  Similarity=0.450  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+.+.||||+|||.+++.|+..+..
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~  149 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGG  149 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHT
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcC
Confidence            3556899999999999999999874

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.71  E-value=0.011  Score=48.96  Aligned_cols=26  Identities=27%  Similarity=0.293  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      ...+|+|.|+.|.||||+|..+.++.
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhh
Confidence            46789999999999999999987764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.68  E-value=0.011  Score=51.10  Aligned_cols=37  Identities=27%  Similarity=0.333  Sum_probs=26.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh----hCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE----GLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~----~~g~~v~~~~   90 (259)
                      .+.+.+|.|++|+||||++..+...+.    ..|..+....
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~A  202 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA  202 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred             cCCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEec
Confidence            467999999999999999877655553    2455555443

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0094  Score=44.97  Aligned_cols=21  Identities=43%  Similarity=0.347  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|+|.|.+|+||||++.++..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998865

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.66  E-value=0.02  Score=47.25  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +.|+|.|=-|+||||++..|+..|...|++|..++
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID   37 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG   37 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence            35778998999999999999999999999987654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.65  E-value=0.0097  Score=44.62  Aligned_cols=20  Identities=25%  Similarity=0.391  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |++.|.+|+||||+++++..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999865

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=94.62  E-value=0.015  Score=41.68  Aligned_cols=39  Identities=18%  Similarity=0.109  Sum_probs=28.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHH-HHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQCS-RLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTla~-~L~~~l~~~g~~v~~~~   90 (259)
                      ..+|...++.+++|||||.++- .+.+.+...+..+..+.
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~   43 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLA   43 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeee
Confidence            3578899999999999997773 44555655565555544

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.01  Score=44.68  Aligned_cols=20  Identities=15%  Similarity=0.189  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||+++++..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999998865

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.54  E-value=0.0065  Score=46.48  Aligned_cols=20  Identities=30%  Similarity=0.353  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+++||||+.+.|..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            88999999999999999853

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.011  Score=44.57  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .-|+|.|.+|+||||+++++..
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3488999999999999999875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.011  Score=44.33  Aligned_cols=20  Identities=35%  Similarity=0.498  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||+++++..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78889999999999999874

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.51  E-value=0.011  Score=46.02  Aligned_cols=20  Identities=25%  Similarity=0.323  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||+++.+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            88999999999999999875

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.49  E-value=0.028  Score=46.55  Aligned_cols=39  Identities=18%  Similarity=0.296  Sum_probs=33.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      ..|.++-|.|++|+||||+|-.++......|..+++++-
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDt   96 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDA   96 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence            578999999999999999999998888777887777653

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.48  E-value=0.0096  Score=48.99  Aligned_cols=26  Identities=15%  Similarity=0.240  Sum_probs=16.8

Q ss_pred             CccEEEEEcCCCCCHHHHH-HHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQC-SRLLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla-~~L~~~l~   80 (259)
                      .|+++ |.|++||||||++ .+++..+.
T Consensus        14 ~~~~l-I~g~aGTGKTt~l~~rv~~ll~   40 (306)
T d1uaaa1          14 TGPCL-VLAGAGSGKTRVITNKIAHLIR   40 (306)
T ss_dssp             SSEEE-ECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEE-EEeeCCccHHHHHHHHHHHHHH
Confidence            35554 5599999999875 44444433

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.46  E-value=0.011  Score=44.47  Aligned_cols=22  Identities=32%  Similarity=0.289  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .-|+|.|.+|+||||++++|..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3488889999999999999865

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.011  Score=44.43  Aligned_cols=20  Identities=25%  Similarity=0.444  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||+++.|..
T Consensus         6 i~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            88899999999999999865

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.012  Score=44.55  Aligned_cols=20  Identities=35%  Similarity=0.476  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||++..|..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999999875

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.012  Score=44.44  Aligned_cols=20  Identities=35%  Similarity=0.378  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||+++++..
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998755

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.36  E-value=0.0092  Score=45.32  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=20.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|++.|.+|+||||+.+++..
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            455688999999999999998853

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.36  E-value=0.036  Score=41.26  Aligned_cols=38  Identities=16%  Similarity=0.252  Sum_probs=33.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      ..|.+=+|.||..|||||-.=+...++...|.++..+.
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~   42 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK   42 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEE
Confidence            47899999999999999999988888988888887654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.36  E-value=0.012  Score=45.07  Aligned_cols=20  Identities=30%  Similarity=0.429  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||+++.+..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998865

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.31  E-value=0.029  Score=46.39  Aligned_cols=39  Identities=18%  Similarity=0.287  Sum_probs=33.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF   91 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~   91 (259)
                      ..|.++-|.|++||||||+|-.++......|..+.+++.
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDt   93 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA   93 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEEC
Confidence            477899999999999999999999988877877777653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.013  Score=44.61  Aligned_cols=23  Identities=17%  Similarity=0.254  Sum_probs=19.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ..-|+|.|.+|+||||+++++..
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            34589999999999999998865

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.012  Score=44.38  Aligned_cols=20  Identities=30%  Similarity=0.406  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||+++++..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78889999999999998764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.25  E-value=0.014  Score=45.11  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=21.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      -.|+=|.|.|++|+||||++-.|.++
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            45777899999999999999777653

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.17  E-value=0.011  Score=45.29  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=19.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLL   76 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~   76 (259)
                      +-.-|+|.|.+|+||||+.++|.
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHh
Confidence            45668999999999999998873

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.019  Score=43.35  Aligned_cols=22  Identities=18%  Similarity=0.259  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      --|+|.|.+|+||||+++++..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4589999999999999998865

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.014  Score=44.13  Aligned_cols=20  Identities=25%  Similarity=0.282  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||+++.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78899999999999998854

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.02  Score=47.38  Aligned_cols=26  Identities=23%  Similarity=0.142  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .-+++.|++|+|||++++.|+.++..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~~   65 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIVQ   65 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHHh
Confidence            34668899999999999999998865

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.016  Score=44.29  Aligned_cols=24  Identities=21%  Similarity=0.169  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +..-|+|.|.+|+||||+++++..
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHh
Confidence            455699999999999999999875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.016  Score=43.73  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |++.|.+|+||||+++++..
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999875

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=0.016  Score=44.05  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .-|+|.|.+|+||||+++.|..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4489999999999999998864

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.98  E-value=0.02  Score=45.83  Aligned_cols=27  Identities=22%  Similarity=0.219  Sum_probs=23.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      |.++|+|.|-+.+||||+++.|.....
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~~   30 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSAV   30 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhcc
Confidence            567799999999999999999977543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.017  Score=43.44  Aligned_cols=21  Identities=19%  Similarity=0.327  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|+|.|.+|+||||++.++..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            378999999999999999865

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.017  Score=43.96  Aligned_cols=20  Identities=30%  Similarity=0.338  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||++.++..
T Consensus         5 ivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67789999999999988865

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.93  E-value=0.017  Score=44.32  Aligned_cols=24  Identities=21%  Similarity=0.131  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      |..-|+|.|.+.+||||+.+.|.+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHH
Confidence            445699999999999999999963

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.92  E-value=0.015  Score=44.75  Aligned_cols=20  Identities=20%  Similarity=0.388  Sum_probs=18.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRL   75 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L   75 (259)
                      .-|+|.|.+|+||||+..++
T Consensus         3 iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            34889999999999999999

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=93.91  E-value=0.017  Score=43.61  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|+|.|.+|+||||+++++..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999864

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.88  E-value=0.018  Score=43.42  Aligned_cols=22  Identities=36%  Similarity=0.404  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .-|+|.|.+|+||||++.++..
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3488999999999999998865

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.83  E-value=0.0049  Score=45.97  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~   78 (259)
                      -|+|.|.+++||||+++.|...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999999754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.78  E-value=0.017  Score=43.78  Aligned_cols=21  Identities=29%  Similarity=0.335  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|+|.|.+|+||||+++++..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998854

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.74  E-value=0.023  Score=46.05  Aligned_cols=27  Identities=19%  Similarity=0.227  Sum_probs=24.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +|.+.+|.|++|+||||++-.|+..+.
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999988764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.035  Score=48.11  Aligned_cols=33  Identities=15%  Similarity=0.095  Sum_probs=27.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      +.|.|++|||||+.+..+...+-..|..++.++
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD   85 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD   85 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            788999999999999888877777788877654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.61  E-value=0.019  Score=45.69  Aligned_cols=22  Identities=18%  Similarity=0.291  Sum_probs=18.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .-|++.|.+|+||||+..++..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3478999999999999999853

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.46  E-value=0.022  Score=46.54  Aligned_cols=25  Identities=16%  Similarity=0.344  Sum_probs=21.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ....-|++.|.+|+||||+++.|..
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhC
Confidence            3567799999999999999999964

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=93.42  E-value=0.063  Score=39.75  Aligned_cols=36  Identities=25%  Similarity=0.246  Sum_probs=29.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      |.+=++.||..|||||-.=+...++...|.++..+.
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ik   37 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK   37 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence            677789999999999977777777877888887654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=0.023  Score=43.55  Aligned_cols=20  Identities=25%  Similarity=0.215  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||++.++..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            99999999999999998865

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=0.014  Score=44.26  Aligned_cols=20  Identities=40%  Similarity=0.469  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |++.|.+|+||||+++++..
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78889999999999998754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.35  E-value=0.013  Score=44.57  Aligned_cols=20  Identities=30%  Similarity=0.308  Sum_probs=8.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||+++.|..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88899999999999998764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.34  E-value=0.025  Score=43.02  Aligned_cols=31  Identities=19%  Similarity=0.254  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHH-HhhCCCeE
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSY-LEGLGHSV   86 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~-l~~~g~~v   86 (259)
                      .-|++.|..|+||||++.++... ....|...
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~~~~t~~~~~   34 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVE   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHSCCCSEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCccEEE
Confidence            34889999999999999998653 33344443

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.34  E-value=0.024  Score=43.26  Aligned_cols=22  Identities=18%  Similarity=0.265  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~   78 (259)
                      -|++.|.+|+||||+..++...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.33  E-value=0.02  Score=49.42  Aligned_cols=27  Identities=26%  Similarity=0.239  Sum_probs=22.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ..-|.|.||.|+|||-+|+.|++.++.
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~~~   94 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHLDI   94 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhccc
Confidence            344788899999999999999998743

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.29  E-value=0.025  Score=43.26  Aligned_cols=20  Identities=30%  Similarity=0.526  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 025041           58 VVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~   77 (259)
                      |+|.|.+|+||||++.++..
T Consensus         5 ivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998866

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.025  Score=43.57  Aligned_cols=22  Identities=23%  Similarity=0.154  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .-|++.|.+|+||||++.++..
T Consensus         4 iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4588999999999999988865

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.24  E-value=0.026  Score=46.75  Aligned_cols=26  Identities=19%  Similarity=0.290  Sum_probs=16.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHH-HHHHHh
Q 025041           54 RGALVVLEGLDRCGKTSQCSR-LLSYLE   80 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~-L~~~l~   80 (259)
                      .|.+ .|.|++||||||++-. ++..+.
T Consensus        24 ~g~~-lV~g~aGSGKTt~l~~ri~~ll~   50 (318)
T d1pjra1          24 EGPL-LIMAGAGSGKTRVLTHRIAYLMA   50 (318)
T ss_dssp             SSCE-EEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCCE-EEEecCCccHHHHHHHHHHHHHH
Confidence            3454 4669999999977644 444443

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.09  E-value=0.029  Score=42.38  Aligned_cols=21  Identities=19%  Similarity=0.302  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|++.|.+|+||||++.++..
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            377889999999999998865

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.78  E-value=0.091  Score=43.13  Aligned_cols=28  Identities=18%  Similarity=0.200  Sum_probs=25.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+-..|+|.||+++||||+++.|...+.
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4567899999999999999999999884

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.039  Score=42.07  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .-|++.|.+|+||||++..+..
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4589999999999999987755

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=92.35  E-value=0.029  Score=47.31  Aligned_cols=31  Identities=32%  Similarity=0.548  Sum_probs=23.0

Q ss_pred             cccccCcccccCCCCCCccEEEEEcCCCCCHHHHHH
Q 025041           38 FRMESSSSLRIGNIDSRGALVVLEGLDRCGKTSQCS   73 (259)
Q Consensus        38 ~~~~~~~~~~~~~~~~~g~lIvieG~dGSGKSTla~   73 (259)
                      +-||+++..  +   ..|-+-+|.|++|+||||+..
T Consensus         2 ~~mhcsan~--~---~~~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1           2 ASMHCSANV--G---EKGDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEECEEEEE--C---TTSCEEEEECSTTSSHHHHHC
T ss_pred             cceeccccc--C---CCCCEEEEEccCCCCccccee
Confidence            358887762  2   245667899999999999774

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.22  E-value=0.05  Score=42.62  Aligned_cols=28  Identities=21%  Similarity=0.304  Sum_probs=25.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+.-+.|.|++|+||||+|..|++.+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~   41 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEK   41 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence            5678999999999999999999998864

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.16  E-value=0.031  Score=47.32  Aligned_cols=30  Identities=33%  Similarity=0.561  Sum_probs=22.6

Q ss_pred             ccccCcccccCCCCCCccEEEEEcCCCCCHHHHHH
Q 025041           39 RMESSSSLRIGNIDSRGALVVLEGLDRCGKTSQCS   73 (259)
Q Consensus        39 ~~~~~~~~~~~~~~~~g~lIvieG~dGSGKSTla~   73 (259)
                      -||+++..  +   ..|-+-+|.|++|+||||+..
T Consensus         3 ~mH~san~--~---~~gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1           3 CMHASANV--G---KQGDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EESEEEEE--C---TTCCEEEEECCTTSSHHHHHC
T ss_pred             Cccccccc--C---CCCCEEEEEccCCCCccccee
Confidence            48887652  2   245566799999999999993

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=92.07  E-value=0.0084  Score=45.50  Aligned_cols=25  Identities=20%  Similarity=0.341  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+.+|.|+.||||||+.+.|.--|.
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4667889999999999999987774

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.00  E-value=0.045  Score=43.34  Aligned_cols=29  Identities=17%  Similarity=0.371  Sum_probs=25.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +|-..|+|.||+++|||+++..|.+.+..
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~G   79 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQG   79 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhCC
Confidence            45688999999999999999999999853

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=91.63  E-value=0.037  Score=46.78  Aligned_cols=31  Identities=32%  Similarity=0.544  Sum_probs=23.1

Q ss_pred             cccccCcccccCCCCCCccEEEEEcCCCCCHHHHHH
Q 025041           38 FRMESSSSLRIGNIDSRGALVVLEGLDRCGKTSQCS   73 (259)
Q Consensus        38 ~~~~~~~~~~~~~~~~~g~lIvieG~dGSGKSTla~   73 (259)
                      +=||+++..+     ..|-+-+|.|++|+||||+..
T Consensus         2 lpmh~san~~-----~~~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1           2 FPMHASANVG-----KEGDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEECEEEEC-----TTCCEEEEEECTTSCHHHHTC
T ss_pred             cccccccccC-----CCCCEEEEEccCCCCcccccc
Confidence            3488877622     245677999999999999774

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.32  E-value=0.092  Score=42.47  Aligned_cols=34  Identities=12%  Similarity=0.091  Sum_probs=24.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      -|.|.|.+|+||+++|+.|.+.-.......+...
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~   58 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHKLSDRSKEPFVALN   58 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEE
T ss_pred             CEEEECCCCcCHHHHHHHHHHhcCCcccccccch
Confidence            3677899999999999999875544444444444

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.32  E-value=0.049  Score=47.31  Aligned_cols=23  Identities=30%  Similarity=0.270  Sum_probs=19.9

Q ss_pred             EEEcCCCCCHHHHHHHHHHHHhh
Q 025041           59 VLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        59 vieG~dGSGKSTla~~L~~~l~~   81 (259)
                      ++.|++|+|||++++.|+.++..
T Consensus        47 llvG~~GvGKtaiv~~la~~i~~   69 (387)
T d1qvra2          47 VLIGEPGVGKTAIVEGLAQRIVK   69 (387)
T ss_dssp             EEEECTTSCHHHHHHHHHHHHHH
T ss_pred             eEECCCCCCHHHHHHHHHHHHHh
Confidence            44599999999999999998754

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.53  E-value=0.06  Score=44.13  Aligned_cols=22  Identities=14%  Similarity=0.218  Sum_probs=19.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .+-+|.|+.||||||+.+.|.=
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4778999999999999988843

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.48  E-value=0.077  Score=45.11  Aligned_cols=22  Identities=14%  Similarity=0.270  Sum_probs=19.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLL   76 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~   76 (259)
                      +.+-+|.|+.||||||+.+.|.
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4467888999999999999985

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.33  E-value=0.077  Score=46.10  Aligned_cols=22  Identities=27%  Similarity=0.197  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLL   76 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~   76 (259)
                      +.-|+|.|.+|+||||+++.|.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHh
Confidence            4569999999999999999996

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.39  E-value=0.16  Score=36.40  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=23.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .-...+|.+|.|||||+++-.+.   ...|..+..+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~---~~~~~~vli~~   40 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAY---AAQGYKVLVLN   40 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHH---HTTTCCEEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH---HHcCCcEEEEc
Confidence            34567889999999999875543   34466665443

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.91  E-value=0.14  Score=41.05  Aligned_cols=31  Identities=13%  Similarity=0.259  Sum_probs=23.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHH--HhhCCCe
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSY--LEGLGHS   85 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~--l~~~g~~   85 (259)
                      .++++|+||.++||||..+.+.-.  +...|..
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~   73 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALIALMAYIGSY   73 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC
T ss_pred             ceEEEEeccCchhhHHHHHHHHHHHHHHHcCCe
Confidence            478999999999999999988653  3334443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=88.88  E-value=0.14  Score=41.84  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=22.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .++.-|.|.|.|.+||||+++.|..
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~  134 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAK  134 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCceEEEEEecCccchhhhhhhhhc
Confidence            4567799999999999999999975

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=88.76  E-value=0.12  Score=42.44  Aligned_cols=20  Identities=40%  Similarity=0.453  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLL   76 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~   76 (259)
                      -|+|.|..|+||||+++.|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            48999999999999999994

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=88.75  E-value=0.16  Score=41.18  Aligned_cols=38  Identities=13%  Similarity=0.121  Sum_probs=25.7

Q ss_pred             CCCccEEEEEcCCCCCHHHH--HHHHHHHHhhCCCeEEEEe
Q 025041           52 DSRGALVVLEGLDRCGKTSQ--CSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        52 ~~~g~lIvieG~dGSGKSTl--a~~L~~~l~~~g~~v~~~~   90 (259)
                      ..+++.+++.++.|||||+.  ...+.+.++ .|..+..+.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~-~~~~~lvi~   45 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK-RGLRTLILA   45 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-HTCCEEEEE
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh-cCCEEEEEc
Confidence            46889999999999999973  244444443 355565543

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=88.26  E-value=0.2  Score=41.61  Aligned_cols=33  Identities=15%  Similarity=0.082  Sum_probs=28.5

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 025041           50 NIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGL   82 (259)
Q Consensus        50 ~~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~   82 (259)
                      ....+|.-+.|.|+.|+||||++..++......
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~   70 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN   70 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHHhhc
Confidence            455789999999999999999999999977653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.09  E-value=0.22  Score=38.79  Aligned_cols=25  Identities=24%  Similarity=0.057  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .-|++.|-.++||||++++|....+
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            4599999999999999999976554

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=88.06  E-value=0.19  Score=38.95  Aligned_cols=24  Identities=17%  Similarity=0.149  Sum_probs=20.5

Q ss_pred             Cc-cEEEEEcCCCCCHHHHHHHHHH
Q 025041           54 RG-ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        54 ~g-~lIvieG~dGSGKSTla~~L~~   77 (259)
                      |+ .-|+|.|-..+||||+++.|..
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHh
Confidence            44 4599999999999999999953

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=87.93  E-value=0.14  Score=39.26  Aligned_cols=21  Identities=24%  Similarity=0.196  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      -|+|.|-..+||||+++.|..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEeccCCcHHHHHHHHHh
Confidence            489999999999999999953

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.75  E-value=0.15  Score=42.09  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYL   79 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l   79 (259)
                      .+|+|.|+-++||||+.+.|....
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            579999999999999999987643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.70  E-value=0.15  Score=42.05  Aligned_cols=25  Identities=24%  Similarity=0.306  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      +-|+|.|..|+||||+++.|...-+
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            4599999999999999999975543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.60  E-value=0.19  Score=41.45  Aligned_cols=26  Identities=12%  Similarity=0.165  Sum_probs=22.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHH
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSY   78 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~   78 (259)
                      +.++-|.|.|.|.+||||+-+.|...
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCC
Confidence            35577999999999999999999853

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.11  E-value=0.19  Score=39.65  Aligned_cols=37  Identities=19%  Similarity=0.066  Sum_probs=27.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .|+=+++.+|.|+|||+.+-.....+...|..+.++-
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~   93 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIF   93 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEE
T ss_pred             CCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEe
Confidence            4555778899999999988777666655666666544

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.09  E-value=0.18  Score=38.75  Aligned_cols=34  Identities=18%  Similarity=0.043  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHH-HHHhhCCCeEEEE
Q 025041           55 GALVVLEGLDRCGKTSQCSRLL-SYLEGLGHSVELW   89 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~-~~l~~~g~~v~~~   89 (259)
                      |.-+++.+|.|||||+.+.... ..+. .+..++.+
T Consensus        40 ~~~~il~apTGsGKT~~a~l~i~~~~~-~~~~vl~l   74 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYV   74 (202)
T ss_dssp             CSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred             CCCEEEEcCCCCchhHHHHHHHHHHhh-ccCcceee
Confidence            4457799999999998875433 3333 33445443

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=86.58  E-value=0.55  Score=41.89  Aligned_cols=44  Identities=27%  Similarity=0.327  Sum_probs=37.3

Q ss_pred             CCCccEEEEEc----CCCCCHHHHHHHHHHHHhhCCCeEE-EEecCCCC
Q 025041           52 DSRGALVVLEG----LDRCGKTSQCSRLLSYLEGLGHSVE-LWRFPDRT   95 (259)
Q Consensus        52 ~~~g~lIvieG----~dGSGKSTla~~L~~~l~~~g~~v~-~~~~p~~~   95 (259)
                      ...|++|.+++    |-|-||||..=-|.+.|+..|.++. .+|+|..+
T Consensus        48 ~~~gklilVTaitPTp~GEGKtTttiGL~~aL~~lgk~~~~~lRePSlG   96 (549)
T d1eg7a_          48 KPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLG   96 (549)
T ss_dssp             SCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEEECCCCST
T ss_pred             CCCceEEEEEeCCCCCCCCCcceeHHhHHHHHHHhCCceEEEEecCCCC
Confidence            45799999998    4699999999999999999898865 57888644

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=86.49  E-value=0.24  Score=40.36  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      ++-|.|.|.|.+||||+-+.|..
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHC
Confidence            46789999999999999999975

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=85.96  E-value=0.24  Score=39.45  Aligned_cols=29  Identities=24%  Similarity=0.390  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH--HHhhCCC
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS--YLEGLGH   84 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~--~l~~~g~   84 (259)
                      .+++|+||..+||||..+.+.-  .+-..|.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~   66 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIALLAQVGS   66 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHHHTTTC
T ss_pred             cEEEEECCCccccchhhhhhHHHHHHHhccc
Confidence            3789999999999999997754  3333454

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=85.26  E-value=0.44  Score=36.84  Aligned_cols=25  Identities=24%  Similarity=0.142  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .-|+|.|=..+||||+++.|...+.
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~~   28 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKILA   28 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHH
Confidence            4599999999999999999976543

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.15  E-value=0.31  Score=36.93  Aligned_cols=32  Identities=19%  Similarity=0.142  Sum_probs=21.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHH-hhCCCeEEEE
Q 025041           58 VVLEGLDRCGKTSQCSRLLSYL-EGLGHSVELW   89 (259)
Q Consensus        58 IvieG~dGSGKSTla~~L~~~l-~~~g~~v~~~   89 (259)
                      ..+.+|.|+|||.++-.++... ...+..++.+
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i   58 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLML   58 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEE
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEE
Confidence            3466999999999887776543 3345555443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.05  E-value=0.24  Score=40.96  Aligned_cols=21  Identities=19%  Similarity=0.120  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~~   77 (259)
                      =|+|.|.|.+||||+-+.|..
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC
T ss_pred             cEeEECCCCCCHHHHHHHHHC
Confidence            388999999999999999955

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=84.78  E-value=0.51  Score=35.88  Aligned_cols=36  Identities=17%  Similarity=0.267  Sum_probs=30.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR   90 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~   90 (259)
                      .+.++|+|+|  -.||||....|..-|...|+.+....
T Consensus         9 ~~~~vI~VTG--T~GKTTt~~~l~~iL~~~g~~~~~~~   44 (204)
T d2jfga3           9 AQAPIVAITG--SNGKSTVTTLVGEMAKAAGVNVGVGG   44 (204)
T ss_dssp             CCSCEEEEEC--SSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEEEC--CCCHHHHHHHHHHHHHhcCCCcccCC
Confidence            3578999999  56899999999999999888765433

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=84.26  E-value=0.28  Score=40.25  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~   77 (259)
                      .+-|+|.|--+|||||+++.|..
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG   46 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVG   46 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHT
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhC
Confidence            35688999999999999999964

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=84.05  E-value=0.51  Score=35.82  Aligned_cols=31  Identities=29%  Similarity=0.328  Sum_probs=26.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE
Q 025041           55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE   87 (259)
Q Consensus        55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~   87 (259)
                      +++|.|+|.  -||||.+.+|+.-|...|..+.
T Consensus         2 ~kvI~VTGT--nGKTTt~~mi~~iL~~~g~~~~   32 (214)
T d1gg4a4           2 ARVVALTGS--SGKTSVKEMTAAILSQCGNTLY   32 (214)
T ss_dssp             CEEEEEECS--SCHHHHHHHHHHHHTTTSCEEE
T ss_pred             CCEEEEeCC--CcHHHHHHHHHHHHHhCCCCEE
Confidence            578999994  5799999999999998887654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.51  E-value=0.31  Score=39.72  Aligned_cols=22  Identities=18%  Similarity=0.311  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Q 025041           56 ALVVLEGLDRCGKTSQCSRLLS   77 (259)
Q Consensus        56 ~lIvieG~dGSGKSTla~~L~~   77 (259)
                      +-|+|.|--+|||||+++.|..
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CeEEEEcCCCCCHHHHHHHHhC
Confidence            3588889999999999999964

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=83.29  E-value=0.43  Score=44.18  Aligned_cols=28  Identities=21%  Similarity=0.508  Sum_probs=24.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+.--|+|.|-+|||||+-++.+.++|-
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999885

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.87  E-value=0.34  Score=37.19  Aligned_cols=20  Identities=25%  Similarity=0.589  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q 025041           57 LVVLEGLDRCGKTSQCSRLL   76 (259)
Q Consensus        57 lIvieG~dGSGKSTla~~L~   76 (259)
                      +|.|+|+.+||||..|+.|+
T Consensus         1 iiLVtGGarSGKS~~AE~l~   20 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALI   20 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEECCCCccHHHHHHHHH
Confidence            57899999999999998875

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.79  E-value=0.45  Score=44.19  Aligned_cols=28  Identities=21%  Similarity=0.444  Sum_probs=24.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+.--|+|.|-+|||||+-++.+.++|-
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999884

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.66  E-value=1  Score=36.84  Aligned_cols=30  Identities=23%  Similarity=0.223  Sum_probs=25.7

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      ...+|.-+.|.|+.|+||||++..++....
T Consensus        64 pigkGQr~~If~~~g~GKt~l~~~i~~~~~   93 (276)
T d2jdid3          64 PYAKGGKIGLFGGAGVGKTVLIMELINNVA   93 (276)
T ss_dssp             CEETTCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             cccCCCEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            446788899999999999999999988753

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=82.23  E-value=0.65  Score=35.80  Aligned_cols=34  Identities=26%  Similarity=0.268  Sum_probs=28.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW   89 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~   89 (259)
                      +-++|+|+|.  .||||....|++-|...|+.+...
T Consensus         4 ~~~vI~ITGT--~GKTTt~~~l~~iL~~~g~~~~~~   37 (234)
T d1e8ca3           4 NLRLVGVTGT--NGKTTTTQLLAQWSQLLGEISAVM   37 (234)
T ss_dssp             SSEEEEEESS--SCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEECC--CcHHHHHHHHHHHHHHCCCCeEEE
Confidence            4478999995  489999999999999989877543

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.45  E-value=0.54  Score=43.66  Aligned_cols=28  Identities=21%  Similarity=0.496  Sum_probs=24.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLE   80 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~   80 (259)
                      .+.--|+|.|-+|||||.-++.+.++|-
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999884

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=80.99  E-value=0.55  Score=44.17  Aligned_cols=28  Identities=21%  Similarity=0.474  Sum_probs=24.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           54 RGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        54 ~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      +.--|+|.|-+|||||+-++.+.++|-.
T Consensus       122 ~~QsIiisGeSGaGKTe~~K~il~yL~~  149 (794)
T d2mysa2         122 ENQSILITGESGAGKTVNTKRVIQYFAT  149 (794)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4567999999999999999999999854

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=80.13  E-value=0.64  Score=43.25  Aligned_cols=29  Identities=21%  Similarity=0.408  Sum_probs=25.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 025041           53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG   81 (259)
Q Consensus        53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~   81 (259)
                      .+.--|+|.|-+|||||+-++.+.++|-.
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l~~  120 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYFAT  120 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            35678999999999999999999998853