Citrus Sinensis ID: 025057

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTGICLLKSSLTWLNSVKLNVLILSLPICSQLGGLKVKQQMSKLPEKK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccHHHHcccccEEEEcccccHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccccEEEEcHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccccccccccccccccccccHHcccccccccccEEccccccccccccccccccccccccccccccccEEEEcccccccHHcHHHHHHcccEEEEEccEcHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccEcHHHHHHHHHHHHHccccEEEEEEEEEEcHHHHHHHccccccEEEccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccc
Coil and Loop (DISEMBL)
mevatasapifglrtrmlatpprtsprtvncnrnlstsfispfangsvssdfsglrlrpdclnpdsfckskprspvitmvipftsgtaweqpppdlasyLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINstgttkggeklgyeTEAFAIYDvmgyvkppiftLCVGNAWGEAALLLGAgakgnraalpsstiMIKQAGDTGICLLKSSLTWLNSVKLNVLILSLpicsqlgglkVKQQMSKLPEKK
Flexible Loop (DISEMBL)
mevatasapifglrtrmlatpprtsprtvncNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPdsfckskprspVITMVIPFtsgtaweqppPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINStgttkggeklGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTGICLLKSSLTWLNSVKLNVLILSLpicsqlgglkvkqqmsklpekk
Low Complexity Region (SEG)
MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNawgeaalllgagakgnraalPSSTIMIKQAGDTGICLLKSSLTWLNSVKLNVLILSLPICSQLGGLKVKQQMSKLPEKK
Disordered region (IsUnstruct)
*************************************SFISPF**********GLRLRPDCLNPDSFCK****SPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTGICLLKSSLTWLNSVKLNVLILSLPICSQLGGLK************
Disordered Region (DISOPRED)
****************************************************************************ITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTGICLLKSSLTWLNSVKLNVLILSLPICSQLGGLK************
Disordered Region (DISEMBL)
MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTGICLLKSSLTWLNSVKLNVLILSLPICSQLGGL*************
Disordered Region (DISPRO)
*********************************NL*TSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTGICLLKSSLTWLNSVKLNVLILSLPICSQLGGLKVKQQMSKL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTGICLLKSSLTWLNSVKLNVLILSLPICSQLGGLKVKQQMSKLPEKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
Q8LB10	305	ATP-dependent Clp proteas	yes	no	0.658	0.557	0.817	8e-79
P74466	225	Putative ATP-dependent Cl	N/A	no	0.468	0.537	0.530	1e-33
Q8L770	330	ATP-dependent Clp proteas	no	no	0.453	0.354	0.559	6e-32
Q9L4P4	228	Putative ATP-dependent Cl	yes	no	0.414	0.469	0.533	3e-29
Q9XJ35	387	ATP-dependent Clp proteas	no	no	0.430	0.286	0.526	2e-25
B0K533	195	ATP-dependent Clp proteas	yes	no	0.410	0.543	0.508	3e-23
B0KBA4	195	ATP-dependent Clp proteas	yes	no	0.410	0.543	0.508	3e-23
Q8RC25	195	ATP-dependent Clp proteas	yes	no	0.410	0.543	0.5	3e-22
C0QGT0	205	ATP-dependent Clp proteas	yes	no	0.476	0.6	0.432	5e-22
Q2LTK5	194	ATP-dependent Clp proteas	yes	no	0.410	0.546	0.447	2e-21

>sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1

 Score =  293 bits (750), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 139/170 (81%), Positives = 152/170 (89%)

Query: 39  FISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLAS 98
           F+SP+  GS+SSD  G +LR + LNP +F  SKP+  V+TMVIPF+ G+A EQPPPDLAS
Sbjct: 49  FLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLAS 108

Query: 99  YLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA 158
           YL+KNRIVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTK GEKLGY+TEA
Sbjct: 109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEA 168

Query: 159 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
           FAIYDVMGYVKPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQ
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQ 218

Arabidopsis thaliana (taxid: 3702)

>sp|P74466|CLPR_SYNY3 Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpR PE=3 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/132 (53%), Positives = 94/132 (71%), Gaps = 11/132 (8%)

Query: 88  AWEQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIY 137
           A++ PPPDL S L K RIVYLGM    S          VT+LI+A+ LYLQ++D +KPIY
Sbjct: 15  AFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIY 74

Query: 138 LYINSTGTT-KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNR 196
            YINSTGT+   G+ +G+ETEAFAI D + Y+KPP+ T+C+G A G AA++L +G KG R
Sbjct: 75  FYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMILSSGTKGYR 134

Query: 197 AALPSSTIMIKQ 208
           A+LP +TI++ Q
Sbjct: 135 ASLPHATIVLNQ 146

Has lost the two conserved residues (Ser and His) proposed to be part of the active site. Therefore it could be inactive.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q8L770|CLPR3_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1

 Score =  137 bits (346), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 86/118 (72%), Gaps = 1/118 (0%)

Query: 92  PPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGE 150
           PPPDL S L   RIVY+GM  VP+VTEL++AE +YLQ+ D ++PIY+YINSTGTT+  GE
Sbjct: 118 PPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGE 177

Query: 151 KLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
            +G E+E FAIYD +  +K  + T+CVG A G+A LLL AG KG R  +P +  MI+Q
Sbjct: 178 TVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQ 235

Arabidopsis thaliana (taxid: 3702)

>sp|Q9L4P4|CLPR_SYNE7 Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942) GN=clpR PE=3 SV=1

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/118 (53%), Positives = 83/118 (70%), Gaps = 11/118 (9%)

Query: 102 KNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGE 150
           K RI+YLGM    S          VTELI+A+ LYL++++ EKPIY YINSTGT+   G+
Sbjct: 31  KERIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGD 90

Query: 151 KLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
            +GYETEAFAI D M Y+KPP+ T+C+G A G AA++L  G  GNRA+LP +TI++ Q
Sbjct: 91  AIGYETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSGGTPGNRASLPHATIVLNQ 148

Has lost the two conserved residues (Ser and His) proposed to be part of the active site. Therefore it could be inactive.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

>sp|Q9XJ35|CLPR1_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 78/112 (69%), Gaps = 1/112 (0%)

Query: 93  PPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-TKGGEK 151
           PPDL S L   RI YLGM  VP+VTEL++A+F++L Y++  KPIYLYINS GT  +  E 
Sbjct: 169 PPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMET 228

Query: 152 LGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSST 203
           +G ETEA+AI D + Y K  ++T+  G A+G+AA+LL  G KG RA  P S+
Sbjct: 229 VGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSS 280

Required for chloroplast development and differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|B0K533|CLPP_THEPX ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter sp. (strain X514) GN=clpP PE=3 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 72/114 (63%), Gaps = 8/114 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RIV+LG     +   L++A+ L+L+ ED +K I+LYINS G        G 
Sbjct: 19  DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GS 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
            T  FAIYD M Y+KP + TLCVG A   AA LL AGAKG R ALP+S IMI Q
Sbjct: 71  ITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQ 124

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Thermoanaerobacter sp. (strain X514) (taxid: 399726)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|B0KBA4|CLPP_THEP3 ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=clpP PE=3 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 72/114 (63%), Gaps = 8/114 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RIV+LG     +   L++A+ L+L+ ED +K I+LYINS G        G 
Sbjct: 19  DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GS 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
            T  FAIYD M Y+KP + TLCVG A   AA LL AGAKG R ALP+S IMI Q
Sbjct: 71  ITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQ 124

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) (taxid: 340099)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q8RC25|CLPP_THETN ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=clpP PE=3 SV=2

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 71/114 (62%), Gaps = 8/114 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RIV+LG     +   L++A+ L+L+ ED +K I+LYINS G        G 
Sbjct: 19  DIFSRLLKDRIVFLGDEINDTTASLVIAQMLFLEAEDPDKDIWLYINSPG--------GS 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
            T   AIYD M Y+KP + TLCVG A   AA LL AGAKG R ALP+S IMI Q
Sbjct: 71  ITAGLAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQ 124

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|C0QGT0|CLPP_DESAH ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=clpP PE=3 SV=1

 Score =  104 bits (260), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/134 (43%), Positives = 79/134 (58%), Gaps = 11/134 (8%)

Query: 75  PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEK 134
           P+I MV+  ++     +   D+ S L K+RI++LG +    V  LI+A+ L+L+ ED EK
Sbjct: 2   PLIPMVVEQSN---RGERAYDIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEK 58

Query: 135 PIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKG 194
            I  YINS G        G  T   A+YD M Y+KP + T+C+G A    ALLL AGAKG
Sbjct: 59  DINFYINSPG--------GVVTAGMAVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKG 110

Query: 195 NRAALPSSTIMIKQ 208
            R +LP+S IMI Q
Sbjct: 111 KRFSLPNSRIMIHQ 124

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) (taxid: 177437)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q2LTK5|CLPP_SYNAS ATP-dependent Clp protease proteolytic subunit OS=Syntrophus aciditrophicus (strain SB) GN=clpP PE=3 SV=1

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 71/114 (62%), Gaps = 8/114 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI++LG      V  LI+A+ L+L+ ED +K I+ Y+N+ G        G+
Sbjct: 19  DIYSRLLKDRIIFLGTPIDDEVANLIIAQLLFLESEDPDKEIFFYLNTPG--------GH 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
            +   AIYD M Y+KPP+ T+CVG A    ALLL AG +G R+ALP S I+I Q
Sbjct: 71  ISSGMAIYDTMRYIKPPVATVCVGQAASMGALLLAAGEQGKRSALPHSRILIHQ 124

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Syntrophus aciditrophicus (strain SB) (taxid: 56780)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
224126447	310	predicted protein [Populus trichocarpa]	0.802	0.667	0.718	1e-85
255580803	314	ATP-dependent Clp protease proteolytic s	0.802	0.659	0.679	2e-79
297800408	305	hypothetical protein ARALYDRAFT_493172 [	0.658	0.557	0.817	3e-77
18414804	305	ATP-dependent Clp protease proteolytic s	0.658	0.557	0.817	5e-77
2245061	241	Clp proteinase like protein [Arabidopsis	0.658	0.705	0.817	1e-76
19698857	305	unknown protein [Arabidopsis thaliana] g	0.658	0.557	0.811	2e-76
260766931	305	ATP-dependent Clp protease [Eriobotrya j	0.794	0.672	0.75	2e-74
356563393	304	PREDICTED: ATP-dependent Clp protease pr	0.949	0.805	0.639	5e-70
449459004	304	PREDICTED: ATP-dependent Clp protease pr	0.794	0.674	0.704	1e-69
359495737	297	PREDICTED: ATP-dependent Clp protease pr	0.794	0.690	0.708	1e-67

>gi|224126447|ref|XP_002329556.1| predicted protein [Populus trichocarpa] gi|118483146|gb|ABK93479.1| unknown [Populus trichocarpa] gi|222870265|gb|EEF07396.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 161/224 (71%), Positives = 180/224 (80%), Gaps = 17/224 (7%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTS----------------FISPFA 44
           M VATA+A  FG   RMLA+P   S R +N NR L+ S                F+SPFA
Sbjct: 1   MAVATATASSFGFHKRMLASP-TVSSRIINPNRTLALSSSPSTSSSSRASLSTCFLSPFA 59

Query: 45  NGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNR 104
            GS++ DFSG ++RP+CLNP S   SK +  V+TMVIP+T G+AWEQPPPDLASYL+KNR
Sbjct: 60  GGSITCDFSGTKIRPECLNPASISSSKGKRSVVTMVIPYTRGSAWEQPPPDLASYLFKNR 119

Query: 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDV 164
           IVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTKGGEKLGYETEAFAIYDV
Sbjct: 120 IVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKGGEKLGYETEAFAIYDV 179

Query: 165 MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
           MGYVKPPIFTLCVGNAWGEAALLL AG++GNR+ALPSSTIM+KQ
Sbjct: 180 MGYVKPPIFTLCVGNAWGEAALLLAAGSRGNRSALPSSTIMMKQ 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580803|ref|XP_002531222.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis] gi|223529182|gb|EEF31158.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/228 (67%), Positives = 174/228 (76%), Gaps = 21/228 (9%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGS------------- 47
           MEVATA+A    L TRMLA+ P  S  T + NR L+ S  S  ++               
Sbjct: 1   MEVATATASTVALHTRMLASTPICS-HTSSSNRTLAFSSSSSSSSSPSLRSSSLSTSFFS 59

Query: 48  -------VSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYL 100
                  V  DFSG+++RP+CLNP S    + +  V+TMVIP+T G+AWEQPPPDLASYL
Sbjct: 60  SFSGSGSVIGDFSGMKVRPECLNPASISNFRGKRSVVTMVIPYTRGSAWEQPPPDLASYL 119

Query: 101 YKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFA 160
           +KNRIVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTKGGEKLGYETEAFA
Sbjct: 120 FKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKGGEKLGYETEAFA 179

Query: 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
           I+DVMGYVKPPIFTLCVGNAWGEAALLL AG+KGNR+ALPSSTIMIKQ
Sbjct: 180 IHDVMGYVKPPIFTLCVGNAWGEAALLLAAGSKGNRSALPSSTIMIKQ 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800408|ref|XP_002868088.1| hypothetical protein ARALYDRAFT_493172 [Arabidopsis lyrata subsp. lyrata] gi|297313924|gb|EFH44347.1| hypothetical protein ARALYDRAFT_493172 [Arabidopsis lyrata subsp. lyrata]

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 139/170 (81%), Positives = 152/170 (89%)

Query: 39  FISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLAS 98
           F+SP+  GS+SSDF G +LR + LNP +   SKP+  V+TMVIPF+ G+A EQPPPDLAS
Sbjct: 49  FLSPYTGGSISSDFCGAKLRAESLNPLNLSSSKPKRGVVTMVIPFSKGSAHEQPPPDLAS 108

Query: 99  YLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA 158
           YL+KNRIVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTK GEKLGY+TEA
Sbjct: 109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEA 168

Query: 159 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
           FAIYDVMGYVKPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQ
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQ 218

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414804|ref|NP_567521.1| ATP-dependent Clp protease proteolytic subunit-related protein 4 [Arabidopsis thaliana] gi|75301253|sp|Q8LB10.1|CLPR4_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic; Short=ClpR4; Flags: Precursor gi|21593086|gb|AAM65035.1| ATP-dependent Clp protease proteolytic subunit ClpR4, putative [Arabidopsis thaliana] gi|26450085|dbj|BAC42162.1| putative ClpP protease complex subunit ClpR4 [Arabidopsis thaliana] gi|332658442|gb|AEE83842.1| ATP-dependent Clp protease proteolytic subunit-related protein 4 [Arabidopsis thaliana]

 Score =  293 bits (750), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 139/170 (81%), Positives = 152/170 (89%)

Query: 39  FISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLAS 98
           F+SP+  GS+SSD  G +LR + LNP +F  SKP+  V+TMVIPF+ G+A EQPPPDLAS
Sbjct: 49  FLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLAS 108

Query: 99  YLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA 158
           YL+KNRIVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTK GEKLGY+TEA
Sbjct: 109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEA 168

Query: 159 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
           FAIYDVMGYVKPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQ
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQ 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2245061|emb|CAB10484.1| Clp proteinase like protein [Arabidopsis thaliana] gi|7268455|emb|CAB80975.1| Clp proteinase like protein [Arabidopsis thaliana]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 139/170 (81%), Positives = 152/170 (89%)

Query: 39  FISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLAS 98
           F+SP+  GS+SSD  G +LR + LNP +F  SKP+  V+TMVIPF+ G+A EQPPPDLAS
Sbjct: 49  FLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLAS 108

Query: 99  YLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA 158
           YL+KNRIVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTK GEKLGY+TEA
Sbjct: 109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEA 168

Query: 159 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
           FAIYDVMGYVKPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQ
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQ 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19698857|gb|AAL91164.1| unknown protein [Arabidopsis thaliana] gi|23197684|gb|AAN15369.1| unknown protein [Arabidopsis thaliana]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/170 (81%), Positives = 152/170 (89%)

Query: 39  FISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLAS 98
           F+SP+  GS+SSD  G +LR + LNP +F  SKP+  V+TMVIPF+ G+A EQPPPDLAS
Sbjct: 49  FLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLAS 108

Query: 99  YLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA 158
           YL+KNRIVYLGMS VPSVTELILAEFLYLQYED +KPIYLYINSTGTTK GEKLGY+TEA
Sbjct: 109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEKKPIYLYINSTGTTKNGEKLGYDTEA 168

Query: 159 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
           FAIYDVMGYVKPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQ
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQ 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|260766931|gb|ACX50407.1| ATP-dependent Clp protease [Eriobotrya japonica]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 165/220 (75%), Positives = 177/220 (80%), Gaps = 15/220 (6%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNR------------NLSTSFISPFANGSV 48
           MEVAT +A  F L TRMLATP  T PR  N  R            +LSTSF+ PFA  S+
Sbjct: 1   MEVAT-TASSFALHTRMLATP--TIPRARNTTRPHPTSSRSLPRASLSTSFLCPFAGNSL 57

Query: 49  SSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYL 108
           SS+FSG +LRP  LNP SF  S+P+  V+TMVI F  G+AWEQPPPDLASYLYKNRIVYL
Sbjct: 58  SSEFSGHKLRPSSLNPASFRGSEPKRGVVTMVILFQRGSAWEQPPPDLASYLYKNRIVYL 117

Query: 109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV 168
           GMS VPSVTELILAEFLYLQYED  KPIYLYINSTGTTKGGEKLGYETEAFAIYDVM YV
Sbjct: 118 GMSLVPSVTELILAEFLYLQYEDDTKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYV 177

Query: 169 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
           KPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIM+KQ
Sbjct: 178 KPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMMKQ 217

Source: Eriobotrya japonica

Species: Eriobotrya japonica

Genus: Eriobotrya

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563393|ref|XP_003549948.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Glycine max]

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 172/269 (63%), Positives = 193/269 (71%), Gaps = 24/269 (8%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNR-----------NLSTSFISPFAN-GSV 48
           MEVATA++  F L   MLA P  +S RTV   R           +LSTSF++P+A   S 
Sbjct: 1   MEVATAASS-FALNKPMLALP--SSSRTVTPIRCMNTSTSPVRTSLSTSFVAPYAGICSA 57

Query: 49  SSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYL 108
           SS FSG +LRP  LNP SF  S  +  V+TMVIPF  G+AWEQPPPDLASYLYKNRIVYL
Sbjct: 58  SSPFSGHKLRPSSLNPASFLGSNAKRGVVTMVIPFQRGSAWEQPPPDLASYLYKNRIVYL 117

Query: 109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV 168
           GMS VPSVTELILAEFLYLQYED +KPIYLYINSTGTTKGGEKLGYETEAFAIYDVM YV
Sbjct: 118 GMSLVPSVTELILAEFLYLQYEDDDKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYV 177

Query: 169 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTGICLLKSSLTWLNSVK 228
           KPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMI+Q     I   +   T +N  +
Sbjct: 178 KPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIRQP----IARFQGQATDVNLAR 233

Query: 229 LNVLILSLPICSQLGGLKVKQQMSKLPEK 257
             V      + ++L  L  K  M K PE+
Sbjct: 234 REV----NNVKTELVKLYAK-HMEKTPEQ 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459004|ref|XP_004147236.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Cucumis sativus] gi|449510487|ref|XP_004163680.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Cucumis sativus]

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 155/220 (70%), Positives = 171/220 (77%), Gaps = 15/220 (6%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLS------------TSFISPFANGSV 48
           MEVAT +A  F L  R+  +P  TS      NR LS            T+F+ PFA GSV
Sbjct: 1   MEVAT-TASSFALTKRI--SPLITSSHNGKSNRTLSMSSSSVRMAPLSTNFLIPFAGGSV 57

Query: 49  SSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYL 108
           S +FSG++LRP  LNP+    SK +  V+TMVIPF  G+AWEQPPPDLASYLYKNRIVYL
Sbjct: 58  SGEFSGVKLRPSSLNPNYSPGSKGKRGVVTMVIPFARGSAWEQPPPDLASYLYKNRIVYL 117

Query: 109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV 168
           GMS VPSVTELILAEFLYLQYED  KPIYLY+NSTGTTKGGEKLGYETEAFA+YDVM YV
Sbjct: 118 GMSLVPSVTELILAEFLYLQYEDETKPIYLYVNSTGTTKGGEKLGYETEAFAVYDVMSYV 177

Query: 169 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
           KPPIFTLCVGNAWGEAALLL AGA GNR+ALPSSTIMIK+
Sbjct: 178 KPPIFTLCVGNAWGEAALLLAAGAPGNRSALPSSTIMIKE 217

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495737|ref|XP_003635075.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Vitis vinifera]

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 151/213 (70%), Positives = 171/213 (80%), Gaps = 8/213 (3%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLST-----SFISPFANGSVSSDFSGL 55
           M VAT ++ +F   TRMLA P  T+  T + NR L++     + +SP+  GSV+SDFSG 
Sbjct: 1   MGVATMASNLF-THTRMLAPP--TNSGTTSSNRTLASFSLRANLLSPYVGGSVASDFSGQ 57

Query: 56  RLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPS 115
           ++RP  L   SF  S  +   +TMVIPFT G+A +QPPPDL SYL+KNRIVYLGMS VPS
Sbjct: 58  KIRPSSLYSASFSGSHAKRGGVTMVIPFTRGSALDQPPPDLPSYLFKNRIVYLGMSLVPS 117

Query: 116 VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTL 175
           VTELILAEFLYLQY+D EKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK PIFTL
Sbjct: 118 VTELILAEFLYLQYDDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKSPIFTL 177

Query: 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
           CVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQ
Sbjct: 178 CVGNAWGEAALLLAAGAKGNRSALPSSTIMIKQ 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
TAIR|locus:2130449	305	CLPR4 "CLP protease R subunit	0.806	0.681	0.633	2.9e-64
TAIR|locus:2031070	387	CLPR1 "CLP protease proteolyti	0.360	0.240	0.505	9.1e-19
FB|FBgn0032229	253	CG5045 [Drosophila melanogaste	0.410	0.418	0.385	4.9e-14
TIGR_CMR|GSU_1792	199	GSU_1792 "ATP-dependent Clp pr	0.472	0.613	0.343	2.1e-13
UNIPROTKB|P63786	195	clpP "ATP-dependent Clp protea	0.410	0.543	0.350	2.7e-13
TIGR_CMR|CHY_0325	195	CHY_0325 "ATP-dependent Clp pr	0.410	0.543	0.350	3.4e-13
TIGR_CMR|CJE_0185	194	CJE_0185 "ATP-dependent Clp pr	0.410	0.546	0.359	4.4e-13
TIGR_CMR|BA_2788	193	BA_2788 "ATP-dependent Clp pro	0.410	0.549	0.368	7.1e-13
UNIPROTKB|P0A6G7	207	clpP [Escherichia coli K-12 (t	0.488	0.608	0.321	1.5e-12
UNIPROTKB|E2QUV8	301	CLPP "ATP-dependent Clp protea	0.736	0.631	0.302	2e-12

TAIR|locus:2130449 CLPR4 "CLP protease R subunit 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 138/218 (63%), Positives = 155/218 (71%)

Query:     1 MEVATASAPIFG-LRTRMLATPP------RTSPR---TVNCNRNLSTSFISPFANGSVSS 50
             MEVA A+A  F  LR R  A  P      R+ PR   + +   +LS  F+SP+  GS+SS
Sbjct:     1 MEVAAATATSFTTLRARTSAIIPSSTRNLRSKPRFSSSSSLRASLSNGFLSPYTGGSISS 60

Query:    51 DFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGM 110
             D  G +LR + LNP +F  SKP+  V+TMVIPF+ G+A EQPPPDLASYL+KNRIVYLGM
Sbjct:    61 DLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLGM 120

Query:   111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP 170
             S VPSVTELILAEFLYLQYED EKPIYLYINSTGTTK GEKLGY+TEAFAIYDVMGYVKP
Sbjct:   121 SLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVKP 180

Query:   171 PIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
             PIFTLCVGN                    PSSTIMIKQ
Sbjct:   181 PIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQ 218

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2031070 CLPR1 "CLP protease proteolytic subunit 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 9.1e-19, P = 9.1e-19
 Identities = 49/97 (50%), Positives = 65/97 (67%)

Query:    86 GTAWEQP---PPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINS 142
             G   E+P   PPDL S L   RI YLGM  VP+VTEL++A+F++L Y++  KPIYLYINS
Sbjct:   159 GGGSERPRTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINS 218

Query:   143 TGT-TKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 178
              GT  +  E +G ETEA+AI D + Y K  ++T+  G
Sbjct:   219 PGTQNEKMETVGSETEAYAIADTISYCKSDVYTINCG 255

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009840 "chloroplastic endopeptidase Clp complex" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

FB|FBgn0032229 CG5045 [Drosophila melanogaster (taxid:7227)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 44/114 (38%), Positives = 57/114 (50%)

Query:    95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
             D+ S L K RI+ L  +    ++  ++A+ L+LQ E+V KPI+LYINS G        G 
Sbjct:    45 DIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPG--------GV 96

Query:   155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
              T   AIYD M YVKPPI T CVG                     P++ IMI Q
Sbjct:    97 VTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQ 150

GO:0005739 "mitochondrion" evidence=ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

TIGR_CMR|GSU_1792 GSU_1792 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 45/131 (34%), Positives = 62/131 (47%)

Query:    79 MVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIY 137
             M++P     T   +   D+ S L K+RI++LG      V  L++A+ L+L+ ED +K I+
Sbjct:     1 MLVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGPVDDHVANLVIAQMLFLEAEDPDKDIH 60

Query:   138 LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXX 197
             LYINS G        G  T   AIYD M Y+K P+ T+CVG                   
Sbjct:    61 LYINSPG--------GVVTSGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRF 112

Query:   198 XXPSSTIMIKQ 208
                 S IMI Q
Sbjct:   113 SLKHSRIMIHQ 123

GO:0009368 "endopeptidase Clp complex" evidence=ISS

UNIPROTKB|P63786 clpP "ATP-dependent Clp protease proteolytic subunit" [Staphylococcus aureus subsp. aureus MW2 (taxid:196620)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 40/114 (35%), Positives = 58/114 (50%)

Query:    95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
             D+ S L K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G 
Sbjct:    19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70

Query:   155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
              T  FAIYD + ++KP + T+C+G                     P++ +MI Q
Sbjct:    71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124

GO:0042802 "identical protein binding" evidence=IPI

TIGR_CMR|CHY_0325 CHY_0325 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 40/114 (35%), Positives = 56/114 (49%)

Query:    95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
             D+ S L K+R +++G      V  L++A+ L+L+ ED EK I+LYINS G        G 
Sbjct:    20 DIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPG--------GV 71

Query:   155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
              T   AIYD M Y+KP + T+C+G                     P + IMI Q
Sbjct:    72 ITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQ 125

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|CJE_0185 CJE_0185 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 41/114 (35%), Positives = 55/114 (48%)

Query:    95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
             D+ S L K+RI+ L       +   I+A+ L+L+ ED  K IYLYINS G        G 
Sbjct:    18 DIYSRLLKDRIIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYLYINSPG--------GV 69

Query:   155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
              T  F+IYD M Y+KP + T+C+G                     P+S IMI Q
Sbjct:    70 ITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQ 123

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|BA_2788 BA_2788 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 42/114 (36%), Positives = 55/114 (48%)

Query:    95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
             D+ S L K+RIV +G      V   ++A+ L+L+ ED EK I+LYINS G        G 
Sbjct:    19 DIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPG--------GS 70

Query:   155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
              T  FAI D M  +KP + TLC+G                     P+S IMI Q
Sbjct:    71 TTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQ 124

GO:0006508 "proteolysis" evidence=ISS

GO:0009368 "endopeptidase Clp complex" evidence=ISS

UNIPROTKB|P0A6G7 clpP [Escherichia coli K-12 (taxid:83333)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 44/137 (32%), Positives = 65/137 (47%)

Query:    72 PRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYED 131
             P   ++ MVI  TS     +   D+ S L K R+++L       +  LI+A+ L+L+ E+
Sbjct:    12 PHMALVPMVIEQTSRG---ERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAEN 68

Query:   132 VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXX 191
              EK IYLYINS G        G  T   +IYD M ++KP + T+C+G             
Sbjct:    69 PEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAG 120

Query:   192 XXXXXXXXPSSTIMIKQ 208
                     P+S +MI Q
Sbjct:   121 AKGKRFCLPNSRVMIHQ 137

GO:0009408 "response to heat" evidence=IEP

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=EXP

UNIPROTKB|E2QUV8 CLPP "ATP-dependent Clp protease proteolytic subunit" [Canis lupus familiaris (taxid:9615)]

 Score = 173 (66.0 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 63/208 (30%), Positives = 91/208 (43%)

Query:     3 VATASAPIFGLRTRMLAT-PPRTSPRT-VNCNRNLSTSFISPFANGSVSSDFSGLRLRPD 60
             VA   +P  G   R+ A  PPR +PRT +   R+L  +         +  + + +R RP 
Sbjct:    12 VAVGRSPALG--PRLAARFPPRRTPRTGLALQRSLHVTAARALPLIPIVVEQT-VR-RPR 67

Query:    61 CLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELI 120
              L P      +    +  +++P   G    +   D+ S L + RIV +      SV  L+
Sbjct:    68 ELGPGGSRGLRAALTLAAVLLPQGRG----ERAYDIYSRLLRERIVCVMGPIDDSVASLV 123

Query:   121 LAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNX 180
             +A+ L+LQ E  +KPI++YINS G        G  T   AIYD M Y+  PI T CVG  
Sbjct:   124 IAQLLFLQSESNKKPIHMYINSPG--------GMVTSGLAIYDTMQYILNPICTWCVGQA 175

Query:   181 XXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
                                P+S IMI Q
Sbjct:   176 ASMGSLLLAAGTPGMRHSLPNSRIMIHQ 203

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LB10	CLPR4_ARATH	No assigned EC number	0.8176	0.6589	0.5573	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!
3rd Layer	3.4.21.92	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	258
PRK12552	222	PRK12552, PRK12552, ATP-dependent Clp protease-lik	4e-57
cd07017	171	cd07017, S14_ClpP_2, Caseinolytic protease (ClpP)	4e-51
COG0740	200	COG0740, ClpP, Protease subunit of ATP-dependent C	8e-36
PRK00277	200	PRK00277, clpP, ATP-dependent Clp protease proteol	5e-34
pfam00574	182	pfam00574, CLP_protease, Clp protease	7e-33
TIGR00493	192	TIGR00493, clpP, ATP-dependent Clp endopeptidase,	3e-30
PRK12553	207	PRK12553, PRK12553, ATP-dependent Clp protease pro	4e-27
PRK12551	196	PRK12551, PRK12551, ATP-dependent Clp protease pro	5e-25
CHL00028	200	CHL00028, clpP, ATP-dependent Clp protease proteol	3e-24
PRK14513	201	PRK14513, PRK14513, ATP-dependent Clp protease pro	8e-22
PRK14514	221	PRK14514, PRK14514, ATP-dependent Clp protease pro	1e-18
cd07013	162	cd07013, S14_ClpP, Caseinolytic protease (ClpP) is	9e-16
PRK14512	197	PRK14512, PRK14512, ATP-dependent Clp protease pro	8e-14
cd00394	161	cd00394, Clp_protease_like, Caseinolytic protease	2e-07

>gnl|CDD|183588 PRK12552, PRK12552, ATP-dependent Clp protease-like protein; Reviewed

 Score =  181 bits (461), Expect = 4e-57
 Identities = 73/147 (49%), Positives = 97/147 (65%), Gaps = 11/147 (7%)

Query: 74  SPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAE 123
           SP++ +  P+        PPPDL S L K RIVYLG+               VTELI+A+
Sbjct: 1   SPIMAVQAPYYGDAVMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQ 60

Query: 124 FLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWG 182
            LYL+++D EKPIY YINSTGT+   G+ +G+ETEAFAI D M Y+KPP+ T+C+G A G
Sbjct: 61  LLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMG 120

Query: 183 EAALLLGAGAKGNRAALPSSTIMIKQA 209
            AA++L AG KG RA+LP +TI++ Q 
Sbjct: 121 TAAMILSAGTKGQRASLPHATIVLHQP 147

Length = 222

>gnl|CDD|132928 cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score =  164 bits (417), Expect = 4e-51
 Identities = 59/114 (51%), Positives = 71/114 (62%), Gaps = 8/114 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K RI++LG      V  LI+A+ LYL+ ED +KPIYLYINS G        G 
Sbjct: 1   DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPG--------GS 52

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
            T   AIYD M Y+KPP+ T+C+G A    ALLL AG KG R ALP+S IMI Q
Sbjct: 53  VTAGLAIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQ 106

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 171

>gnl|CDD|223811 COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score =  126 bits (318), Expect = 8e-36
 Identities = 56/134 (41%), Positives = 78/134 (58%), Gaps = 11/134 (8%)

Query: 75  PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEK 134
            ++ MVI     T+  +   D+ S L K RI++LG      +  LI+A+ L+L+ ED +K
Sbjct: 2   ALVPMVIE---QTSRGERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDK 58

Query: 135 PIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKG 194
            IYLYINS G        G  T   AIYD M ++KPP+ T+C+G A    ++LL AG KG
Sbjct: 59  DIYLYINSPG--------GSVTAGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKG 110

Query: 195 NRAALPSSTIMIKQ 208
            R ALP++ IMI Q
Sbjct: 111 KRFALPNARIMIHQ 124

Length = 200

>gnl|CDD|178955 PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  121 bits (306), Expect = 5e-34
 Identities = 60/136 (44%), Positives = 77/136 (56%), Gaps = 13/136 (9%)

Query: 74  SPVITMVIPFTS-GTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDV 132
             ++ MVI  TS G        D+ S L K RI++LG      +  LI+A+ L+L+ ED 
Sbjct: 5   MNLVPMVIEQTSRGERS----YDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDP 60

Query: 133 EKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGA 192
           +K IYLYINS G        G  T   AIYD M ++KP + T+C+G A    A LL AGA
Sbjct: 61  DKDIYLYINSPG--------GSVTAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGA 112

Query: 193 KGNRAALPSSTIMIKQ 208
           KG R ALP+S IMI Q
Sbjct: 113 KGKRFALPNSRIMIHQ 128

Length = 200

>gnl|CDD|201316 pfam00574, CLP_protease, Clp protease

 Score =  118 bits (297), Expect = 7e-33
 Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 8/115 (6%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K RI++LG      V  LI+A+ L+L+ ED +K IYLYINS G        G 
Sbjct: 8   DIYSRLLKERIIFLGGEIDDEVANLIIAQLLFLEAEDPDKDIYLYINSPG--------GS 59

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQA 209
            T   AIYD M ++KP + T+C+G A    + +L AG KG R ALP++ IMI Q 
Sbjct: 60  VTAGLAIYDTMQFIKPDVSTICLGLAASMGSFILAAGTKGKRFALPNARIMIHQP 114

The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Cyanophora parodoxa clpP-B has lost all of these active site residues and is therefore inactive. Some members contain one or two large insertions. Length = 182

>gnl|CDD|188055 TIGR00493, clpP, ATP-dependent Clp endopeptidase, proteolytic subunit ClpP

 Score =  111 bits (279), Expect = 3e-30
 Identities = 53/114 (46%), Positives = 68/114 (59%), Gaps = 8/114 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K RI++L      +V   I+A+ L+L+ ED EK IYLYINS G        G 
Sbjct: 19  DIYSRLLKERIIFLSGEVNDNVANSIVAQLLFLEAEDPEKDIYLYINSPG--------GS 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
            T   AIYD M ++KP + T+C+G A    A LL AGAKG R +LP+S IMI Q
Sbjct: 71  ITAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPNSRIMIHQ 124

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores at least 370 by This model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 192

>gnl|CDD|237133 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  103 bits (259), Expect = 4e-27
 Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 9/130 (6%)

Query: 80  VIP-FTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYL 138
           ++P F   T++     D  + L++ RI++LG     +    ++A+ L L+  D ++ I L
Sbjct: 11  ILPSFIERTSYGVKESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITL 70

Query: 139 YINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAA 198
           YINS G        G  T   AIYD + +++P + T+C G A    A+LL AG  G R A
Sbjct: 71  YINSPG--------GSVTAGDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFA 122

Query: 199 LPSSTIMIKQ 208
           LP++ I+I Q
Sbjct: 123 LPNARILIHQ 132

Length = 207

>gnl|CDD|139060 PRK12551, PRK12551, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score = 98.0 bits (244), Expect = 5e-25
 Identities = 50/114 (43%), Positives = 65/114 (57%), Gaps = 8/114 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L + RI++LG          I+A+ L+L+ ED EK IYLYINS G        G 
Sbjct: 17  DIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG--------GS 68

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
             +   I+D M +VKP + T+CVG A    A LL AGAKG R++L  S IMI Q
Sbjct: 69  VYDGLGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQ 122

Length = 196

>gnl|CDD|214340 CHL00028, clpP, ATP-dependent Clp protease proteolytic subunit

 Score = 95.7 bits (239), Expect = 3e-24
 Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 8/114 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           DL + LY+ R+++LG      +   ++   +YL  ED  K +YL+INS G        G 
Sbjct: 22  DLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG--------GS 73

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
                AIYD M +VKP + T+C+G A   A+ +L  G    R A P + +MI Q
Sbjct: 74  VISGLAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQ 127

Length = 200

>gnl|CDD|237742 PRK14513, PRK14513, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score = 89.6 bits (222), Expect = 8e-22
 Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 8/114 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+++G      +   I+A+ L L  ++ E+ I +YIN  G        G 
Sbjct: 19  DIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG--------GE 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
                AIYD M Y+K P+ T+CVG A    ++LL AG KG R ALP+S IMI Q
Sbjct: 71  VYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQ 124

Length = 201

>gnl|CDD|184722 PRK14514, PRK14514, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score = 81.5 bits (201), Expect = 1e-18
 Identities = 44/114 (38%), Positives = 58/114 (50%), Gaps = 8/114 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L  +RI++LG          I A+ LYL   D  K I +YINS G        G 
Sbjct: 46  DVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPG--------GS 97

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
                 IYD M ++   + T+C G A   A++LL AG KG R+ALP S +MI Q
Sbjct: 98  VYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQ 151

Length = 221

>gnl|CDD|132924 cd07013, S14_ClpP, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score = 72.3 bits (177), Expect = 9e-16
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 118 ELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 177
               A+ L+L   + EK IYLYINS G        G      AIYD + ++K  + T+  
Sbjct: 15  NQFAAQLLFLGAVNPEKDIYLYINSPG--------GDVFAGMAIYDTIKFIKADVVTIID 66

Query: 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
           G A    +++  AGAKG R  LP++ +MI Q
Sbjct: 67  GLAASMGSVIAMAGAKGKRFILPNAMMMIHQ 97

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 162

>gnl|CDD|237741 PRK14512, PRK14512, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score = 67.9 bits (166), Expect = 8e-14
 Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 8/93 (8%)

Query: 116 VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTL 175
           ++EL   + L L+  D +KPI++YI+S G        G     FAI++++ +VKP +FT+
Sbjct: 36  LSELFQEKILLLEALDSKKPIFVYIDSEG--------GDIDAGFAIFNMIRFVKPKVFTI 87

Query: 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
            VG     AAL+  A  K +R +LP++  ++ Q
Sbjct: 88  GVGLVASAAALIFLAAKKESRFSLPNARYLLHQ 120

Length = 197

>gnl|CDD|132923 cd00394, Clp_protease_like, Caseinolytic protease (ClpP) is an ATP-dependent protease

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 117 TELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLC 176
            + + A+  + + ++  K I L +N+ G        G       I D +   + P+    
Sbjct: 13  ADQLAAQIRFAEADNSVKAIVLEVNTPG--------GRVDAGMNIVDALQASRKPVIAYV 64

Query: 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
            G A      +  A  K      P + +    
Sbjct: 65  GGQAASAGYYIATAANK--IVMAPGTRVGSHG 94

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Another family included in this class of enzymes is the signal peptide peptidase A (SppA; S49) which is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Mutagenesis studies suggest that the catalytic center of SppA comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain. Others, including sohB peptidase, protein C, protein 1510-N and archaeal signal peptide peptidase, do not contain the amino-terminal domain. The third family included in this hierarchy is nodulation formation efficiency D (NfeD) which is a membrane-bound Clp-class protease and only found in bacteria and archaea. Majority of the NfeD genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named stomatin operon partner protein (STOPP). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 from Pyrococcus horikoshii has been shown to possess serine protease activity having a Ser-Lys catalytic dyad. Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	100.0
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	100.0
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	100.0
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	100.0
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	100.0
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	100.0
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	100.0
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	100.0
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	99.97
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.84
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.73
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.71
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.62
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.44
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	98.84
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	98.78
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	98.65
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	98.54
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	98.46
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	98.39
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	98.34
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	98.29
PRK11778	330	putative inner membrane peptidase; Provisional	97.77
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	97.64
PRK10949	618	protease 4; Provisional	97.47
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	97.46
COG3904	245	Predicted periplasmic protein [Function unknown]	95.93
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	95.47
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	95.26
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	95.13
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	95.04
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	95.03
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	94.71
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	94.04
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	93.47
PRK07511	260	enoyl-CoA hydratase; Provisional	92.4
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	92.05
PRK06688	259	enoyl-CoA hydratase; Provisional	92.01
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	89.99
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	89.95
PRK05869	222	enoyl-CoA hydratase; Validated	89.45
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	89.09
PRK06072	248	enoyl-CoA hydratase; Provisional	88.91
PRK08258	277	enoyl-CoA hydratase; Provisional	88.83
PRK07260	255	enoyl-CoA hydratase; Provisional	88.49
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	88.37
PRK10949	618	protease 4; Provisional	88.1
PRK07854	243	enoyl-CoA hydratase; Provisional	87.78
PRK06210	272	enoyl-CoA hydratase; Provisional	87.68
PRK07657	260	enoyl-CoA hydratase; Provisional	87.65
PRK06495	257	enoyl-CoA hydratase; Provisional	87.38
PRK06190	258	enoyl-CoA hydratase; Provisional	87.26
PRK06023	251	enoyl-CoA hydratase; Provisional	87.19
PRK07468	262	enoyl-CoA hydratase; Provisional	87.18
PRK07509	262	enoyl-CoA hydratase; Provisional	86.9
PRK05981	266	enoyl-CoA hydratase; Provisional	86.79
PLN02600	251	enoyl-CoA hydratase	86.66
PRK06143	256	enoyl-CoA hydratase; Provisional	86.56
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	86.53
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	86.45
PRK05995	262	enoyl-CoA hydratase; Provisional	86.16
PRK05864	276	enoyl-CoA hydratase; Provisional	86.16
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	86.15
PLN02888	265	enoyl-CoA hydratase	86.04
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	85.72
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	85.59
PRK08138	261	enoyl-CoA hydratase; Provisional	85.5
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	85.39
PRK09076	258	enoyl-CoA hydratase; Provisional	85.35
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	85.34
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	85.11
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	84.99
PRK08260	296	enoyl-CoA hydratase; Provisional	84.5
PRK08150	255	enoyl-CoA hydratase; Provisional	83.61
PRK05870	249	enoyl-CoA hydratase; Provisional	83.24
PRK06142	272	enoyl-CoA hydratase; Provisional	83.24
PRK05980	260	enoyl-CoA hydratase; Provisional	83.09
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	82.96
PRK07327	268	enoyl-CoA hydratase; Provisional	82.74
PRK08140	262	enoyl-CoA hydratase; Provisional	82.64
PRK06144	262	enoyl-CoA hydratase; Provisional	82.61
PRK07938	249	enoyl-CoA hydratase; Provisional	82.46
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	82.06
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	82.05
PRK08272	302	enoyl-CoA hydratase; Provisional	82.0
PRK08290	288	enoyl-CoA hydratase; Provisional	81.96
PRK07659	260	enoyl-CoA hydratase; Provisional	81.89
PRK06563	255	enoyl-CoA hydratase; Provisional	81.86
PRK07827	260	enoyl-CoA hydratase; Provisional	81.45
PRK05862	257	enoyl-CoA hydratase; Provisional	81.31
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	80.82
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	80.74
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	80.42
PRK09245	266	enoyl-CoA hydratase; Provisional	80.34
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	80.19
PRK07658	257	enoyl-CoA hydratase; Provisional	80.04

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.7e-50  Score=363.22  Aligned_cols=147  Identities=45%  Similarity=0.663  Sum_probs=128.1

Q ss_pred             Ceee-EEeeec-CCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcc
Q 025057           75 PVIT-MVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKL  152 (258)
Q Consensus        75 ~~v~-~~i~~~-~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~  152 (258)
                      ..+| ++++.. +|   .++++||||+|||+||||||++|||+++++|++|||||+++|++|||+|||||||        
T Consensus        65 ~~~p~~~~~~~~rG---~~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPG--------  133 (275)
T KOG0840|consen   65 ILVPRFPIESPGRG---RERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPG--------  133 (275)
T ss_pred             ccCCcceeeccccC---CCCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCC--------
Confidence            4555 344433 34   3678999999999999999999999999999999999999999999999999999        


Q ss_pred             ccHhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch--h-hHHHHHHHHHHHHHHH
Q 025057          153 GYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT--G-ICLLKSSLTWLNSVKL  229 (258)
Q Consensus       153 G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~--~-~~~le~~l~~L~~~~~  229 (258)
                      |++++|+||||||+++++||.|+|+|+|||||+|||+||+||+|+++||||+|||||.++  | ..++...++++...+.
T Consensus       134 G~vtaglAIYDtMq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~  213 (275)
T KOG0840|consen  134 GSVTAGLAIYDTMQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKE  213 (275)
T ss_pred             CccchhhhHHHHHHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999985  2 2266666666555554


Q ss_pred             HHH
Q 025057          230 NVL  232 (258)
Q Consensus       230 nvy  232 (258)
                      ++.
T Consensus       214 ~l~  216 (275)
T KOG0840|consen  214 YLN  216 (275)
T ss_pred             HHH
Confidence            443

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=100.00  E-value=1.3e-46  Score=331.66  Aligned_cols=141  Identities=40%  Similarity=0.628  Sum_probs=128.7

Q ss_pred             CeeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcccc
Q 025057           75 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY  154 (258)
Q Consensus        75 ~~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~  154 (258)
                      .++|+++|++   ..+++++|||++|+++|||||+++|++.+++.+++||++|+++++.|+|+|||||||        |+
T Consensus         2 ~~~~~~~e~~---~~~~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpG--------G~   70 (200)
T COG0740           2 ALVPMVIEQT---SRGERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG--------GS   70 (200)
T ss_pred             CCCccccCcc---cCCCChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCC--------cc
Confidence            4688888864   233677999999999999999999999999999999999999999999999999999        89


Q ss_pred             HhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHH
Q 025057          155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNS  226 (258)
Q Consensus       155 v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~  226 (258)
                      |++|+||||+||+++++|+|+|+|+|||||++|++||+||+|+++|||++|||||+++.   ..+++.+.+.+..
T Consensus        71 V~aG~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~  145 (200)
T COG0740          71 VTAGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILK  145 (200)
T ss_pred             cchhHHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999843   2378877766553

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=100.00  E-value=5.7e-46  Score=331.97  Aligned_cols=162  Identities=45%  Similarity=0.760  Sum_probs=137.7

Q ss_pred             CCCCCChHHhhhcCcEEEeCceeChh----------hHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhhH
Q 025057           90 EQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETEA  158 (258)
Q Consensus        90 ~~~~~Di~s~Ll~eRIIfLgg~Idd~----------~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~aG  158 (258)
                      .++++|++++||++|||||+++|+|+          ++++|++|||||+.+|++++|+||||||||+. +|+.+|+|++|
T Consensus        17 ~~~~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~g   96 (222)
T PRK12552         17 RTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEA   96 (222)
T ss_pred             CCCCcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccH
Confidence            34678999999999999999999999          99999999999999999999999999999984 88999999999


Q ss_pred             HHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHHHHHHHHhhc
Q 025057          159 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNSVKLNVLILS  235 (258)
Q Consensus       159 lAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~~~~nvyil~  235 (258)
                      ++|||+|++++++|+|+|+|+|||||++||+||+||+|+++|||++|||||+++.   ..+++...++|+..+..+....
T Consensus        97 laIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iy  176 (222)
T PRK12552         97 FAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEIL  176 (222)
T ss_pred             HHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999742   3477777666665544443222


Q ss_pred             cccccccCCcchhhhhc
Q 025057          236 LPICSQLGGLKVKQQMS  252 (258)
Q Consensus       236 ~~~~s~l~~~~~~~~~~  252 (258)
                       ..+++..--+|.+.|+
T Consensus       177 -a~~TG~~~e~I~~d~~  192 (222)
T PRK12552        177 -SRNTGQTVEKLSKDTD  192 (222)
T ss_pred             -HHHHCCCHHHHHHHhc
Confidence             2234444345555554

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=4.1e-44  Score=315.58  Aligned_cols=166  Identities=33%  Similarity=0.475  Sum_probs=136.1

Q ss_pred             eeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccH
Q 025057           76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE  155 (258)
Q Consensus        76 ~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v  155 (258)
                      ++|++++.+.   .++++.|+|++||++|||||+++|+++++++|++||+||+++|++++|+|||||||        |+|
T Consensus         3 ~~p~~~~~~~---~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG--------G~v   71 (201)
T PRK14513          3 VIPYVIEQTG---RGERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG--------GEV   71 (201)
T ss_pred             CCCcccccCC---CCccccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------Cch
Confidence            4677776442   22456899999999999999999999999999999999999999999999999999        899


Q ss_pred             hhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch---hhHHHHHHHHHHHHHHHHHH
Q 025057          156 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT---GICLLKSSLTWLNSVKLNVL  232 (258)
Q Consensus       156 ~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~---~~~~le~~l~~L~~~~~nvy  232 (258)
                      ++|++|||+|++++++|+|+|+|+|||||++||+||++|+|+++|||++|||||+++   ...+++...++|+..+..+.
T Consensus        72 ~~GlaIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~  151 (201)
T PRK14513         72 YAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLV  151 (201)
T ss_pred             hhHHHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999974   23466666655554333322


Q ss_pred             hhccccccccCCcchhhhhcc
Q 025057          233 ILSLPICSQLGGLKVKQQMSK  253 (258)
Q Consensus       233 il~~~~~s~l~~~~~~~~~~~  253 (258)
                      .+ +..+++..--+|.+.|++
T Consensus       152 ~i-ya~~Tg~~~~~I~~~~~r  171 (201)
T PRK14513        152 DI-YHRHTDLPHEKLLRDMER  171 (201)
T ss_pred             HH-HHHHHCcCHHHHHHHhcc
Confidence            11 223445554566666653

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=7.9e-44  Score=317.87  Aligned_cols=166  Identities=29%  Similarity=0.370  Sum_probs=137.3

Q ss_pred             CeeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcccc
Q 025057           75 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY  154 (258)
Q Consensus        75 ~~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~  154 (258)
                      .++|++++.+.   .+++++|+|++||++|||||+++||+++++++++||+||+.++++++|+|||||||        |+
T Consensus        29 ~~~p~~~~~~~---~~~~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpG--------Gs   97 (221)
T PRK14514         29 YLNPYILEERQ---LNVTQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPG--------GS   97 (221)
T ss_pred             cccceeeeeCC---CCCcccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCC--------cc
Confidence            47888887542   23567999999999999999999999999999999999999999999999999999        89


Q ss_pred             HhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHHHHHHH
Q 025057          155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNSVKLNV  231 (258)
Q Consensus       155 v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~~~~nv  231 (258)
                      |++|++|||+|++++++|+|+|+|+|||||++||+||++|+|+++|||++|||||+++.   ..+++...+.++..+..+
T Consensus        98 v~aGlaIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i  177 (221)
T PRK14514         98 VYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKEL  177 (221)
T ss_pred             hhhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999742   236666666655555444


Q ss_pred             HhhccccccccCCcchhhhhc
Q 025057          232 LILSLPICSQLGGLKVKQQMS  252 (258)
Q Consensus       232 yil~~~~~s~l~~~~~~~~~~  252 (258)
                      +-.. ...++..--+|.+.|+
T Consensus       178 ~~iy-a~~TG~~~e~I~~~~~  197 (221)
T PRK14514        178 YTII-ADHSGTPFDKVWADSD  197 (221)
T ss_pred             HHHH-HHHHCcCHHHHHHHhh
Confidence            4322 2233333335555443

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=100.00  E-value=1.3e-42  Score=305.23  Aligned_cols=153  Identities=27%  Similarity=0.444  Sum_probs=128.6

Q ss_pred             CCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCC
Q 025057           91 QPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP  170 (258)
Q Consensus        91 ~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~  170 (258)
                      .++.|+|++||++|||||+++||+++++++++||+||+.+|+.++|+|||||||        |+|++|++|||+|+++++
T Consensus        18 ~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG--------G~v~~g~aIyd~m~~~~~   89 (200)
T CHL00028         18 ATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG--------GSVISGLAIYDTMQFVKP   89 (200)
T ss_pred             cccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC--------cchhhHHHHHHHHHhcCC
Confidence            456899999999999999999999999999999999999999999999999999        899999999999999999


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch-h---hHHHHHHHHHHHHHHHHHHhhccccccccCCcc
Q 025057          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT-G---ICLLKSSLTWLNSVKLNVLILSLPICSQLGGLK  246 (258)
Q Consensus       171 ~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~-~---~~~le~~l~~L~~~~~nvyil~~~~~s~l~~~~  246 (258)
                      +|+|+|+|+|||||++||+||+||+|+++|||++|||||+++ .   ..+++...++|+..+..+. ..+..+++..--+
T Consensus        90 ~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~-~~ya~~Tg~~~e~  168 (200)
T CHL00028         90 DVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETIT-RVYAQRTGKPLWV  168 (200)
T ss_pred             CEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHCcCHHH
Confidence            999999999999999999999999999999999999999975 2   3366666666654443322 2223344444345


Q ss_pred             hhhhhc
Q 025057          247 VKQQMS  252 (258)
Q Consensus       247 ~~~~~~  252 (258)
                      |.+.|+
T Consensus       169 i~~~~~  174 (200)
T CHL00028        169 ISEDME  174 (200)
T ss_pred             HHHHhh
Confidence            554443

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=1.5e-42  Score=304.17  Aligned_cols=130  Identities=39%  Similarity=0.562  Sum_probs=118.7

Q ss_pred             CCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCC
Q 025057           92 PPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPP  171 (258)
Q Consensus        92 ~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~  171 (258)
                      ...|+|++||++|||||+++||+++++++++||+||+++|++++|+|||||||        |+|++|++|||+|++++++
T Consensus        14 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG--------G~v~~g~aIyd~m~~~~~~   85 (196)
T PRK12551         14 RAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG--------GSVYDGLGIFDTMQHVKPD   85 (196)
T ss_pred             cccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC--------cchhhHHHHHHHHHhcCCC
Confidence            45899999999999999999999999999999999999999999999999999        8999999999999999999


Q ss_pred             EEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHHHHH
Q 025057          172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNSVKL  229 (258)
Q Consensus       172 V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~~~~  229 (258)
                      |+|+|+|+|||||++||++|++|+|+++|||++|||||+++.   ..+++...++|+..+.
T Consensus        86 V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~  146 (196)
T PRK12551         86 VHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKE  146 (196)
T ss_pred             EEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999742   3366666555554333

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=100.00  E-value=1.5e-38  Score=276.52  Aligned_cols=164  Identities=38%  Similarity=0.514  Sum_probs=132.5

Q ss_pred             eeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHh
Q 025057           77 ITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET  156 (258)
Q Consensus        77 v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~  156 (258)
                      +|++++...   .++++.|++++||++|+|||+|+|++++++++++||++|+.+++.++|+|||||||        |+|+
T Consensus         3 ~p~~~~~~~---~~~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpG--------G~v~   71 (191)
T TIGR00493         3 IPMVIEQTG---RGERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPG--------GSIT   71 (191)
T ss_pred             CCcccccCC---CCcccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------CCHH
Confidence            565555432   23456899999999999999999999999999999999999999999999999999        8999


Q ss_pred             hHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch--h-hHHHHHHHHHHHHHHHHHHh
Q 025057          157 EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT--G-ICLLKSSLTWLNSVKLNVLI  233 (258)
Q Consensus       157 aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~--~-~~~le~~l~~L~~~~~nvyi  233 (258)
                      +|++|||+|++++++|+|+|+|+|||||++|++||++++|+++|||++|||||+++  | ..+++...++++.....+..
T Consensus        72 ~g~~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~  151 (191)
T TIGR00493        72 AGLAIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLND  151 (191)
T ss_pred             HHHHHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999863  2 33666666665544443322


Q ss_pred             hccccccccCCcchhhhhc
Q 025057          234 LSLPICSQLGGLKVKQQMS  252 (258)
Q Consensus       234 l~~~~~s~l~~~~~~~~~~  252 (258)
                      .. ...++..--+|.+.|+
T Consensus       152 ~y-a~~tg~~~~~i~~~~~  169 (191)
T TIGR00493       152 IL-ANHTGQSLEQIEKDTE  169 (191)
T ss_pred             HH-HHHHCcCHHHHHHHhh
Confidence            22 2223333335555543

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=3.4e-36  Score=263.55  Aligned_cols=153  Identities=27%  Similarity=0.369  Sum_probs=126.4

Q ss_pred             CCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCC
Q 025057           91 QPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP  170 (258)
Q Consensus        91 ~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~  170 (258)
                      ..+.|++++||++|+|||+|+|++++++.|+++|++|+.+++.++|+|||||||        |+|++|++|||+|+++++
T Consensus        11 ~~~~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~v~ag~aI~d~i~~~~~   82 (197)
T PRK14512         11 TGIDKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEG--------GDIDAGFAIFNMIRFVKP   82 (197)
T ss_pred             CCcchHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC--------CCHHHHHHHHHHHHhCCC
Confidence            346799999999999999999999999999999999999888999999999999        899999999999999999


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch--h-hHHHHHHHHHHHHHHHHHHhhccccccccCCcch
Q 025057          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT--G-ICLLKSSLTWLNSVKLNVLILSLPICSQLGGLKV  247 (258)
Q Consensus       171 ~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~--~-~~~le~~l~~L~~~~~nvyil~~~~~s~l~~~~~  247 (258)
                      +|+|+|.|+|||||++|+++|++++|+++|||++|||||+++  | ..+++...++++.....+.-. +...++..--+|
T Consensus        83 ~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~-~a~~tg~~~~~i  161 (197)
T PRK14512         83 KVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDI-IAKETGQELDKV  161 (197)
T ss_pred             CEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHH-HHHHhCcCHHHH
Confidence            999999999999999999999999999999999999999973  2 335666555554333222222 222344443455


Q ss_pred             hhhhc
Q 025057          248 KQQMS  252 (258)
Q Consensus       248 ~~~~~  252 (258)
                      .+.|+
T Consensus       162 ~~~~~  166 (197)
T PRK14512        162 EKDTD  166 (197)
T ss_pred             HHhhh
Confidence            55544

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=1.1e-35  Score=260.01  Aligned_cols=166  Identities=37%  Similarity=0.541  Sum_probs=133.1

Q ss_pred             CeeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcccc
Q 025057           75 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY  154 (258)
Q Consensus        75 ~~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~  154 (258)
                      ++||++++..   ...+.++|++++||++|||||+|+|+++++++++++|++|+.+++.++|+|||||||        |+
T Consensus         6 ~~~p~~~~~~---~~~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG--------G~   74 (200)
T PRK00277          6 NLVPMVIEQT---SRGERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG--------GS   74 (200)
T ss_pred             CCCceeeccC---CCCcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------Cc
Confidence            3466666432   122455899999999999999999999999999999999999999999999999999        89


Q ss_pred             HhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch--h-hHHHHHHHHHHHHHHHHH
Q 025057          155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT--G-ICLLKSSLTWLNSVKLNV  231 (258)
Q Consensus       155 v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~--~-~~~le~~l~~L~~~~~nv  231 (258)
                      |++|++|||+|++++++|+|+|.|.|+|+|++|+++|++++|+++|||++|||||+++  | ..+++...++++.....+
T Consensus        75 v~~g~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~  154 (200)
T PRK00277         75 VTAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRL  154 (200)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999863  2 336666666655444332


Q ss_pred             HhhccccccccCCcchhhhhc
Q 025057          232 LILSLPICSQLGGLKVKQQMS  252 (258)
Q Consensus       232 yil~~~~~s~l~~~~~~~~~~  252 (258)
                      ... +..+++..--+|.+.|+
T Consensus       155 ~~~-~a~~tg~~~~~i~~~~~  174 (200)
T PRK00277        155 NEI-LAEHTGQPLEKIEKDTD  174 (200)
T ss_pred             HHH-HHHHHCcCHHHHHHHhh
Confidence            211 23333443334544443

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=7.8e-35  Score=256.07  Aligned_cols=141  Identities=33%  Similarity=0.486  Sum_probs=122.2

Q ss_pred             CeeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcccc
Q 025057           75 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY  154 (258)
Q Consensus        75 ~~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~  154 (258)
                      .++|++++..+..   ....||+++||++|+|||+|+|+++++++++++|++++.+++.++|+|||||||        |+
T Consensus        10 ~~~p~~~~~~~~~---~~~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~   78 (207)
T PRK12553         10 YILPSFIERTSYG---VKESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPG--------GS   78 (207)
T ss_pred             CCCCcccccCCCC---CccccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC--------Cc
Confidence            4677766533222   234899999999999999999999999999999999999998999999999999        89


Q ss_pred             HhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCC--ch--h-hHHHHHHHHHHHH
Q 025057          155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAG--DT--G-ICLLKSSLTWLNS  226 (258)
Q Consensus       155 v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~--~~--~-~~~le~~l~~L~~  226 (258)
                      +++|++|||+|++++++|+|+|.|+|+|+|++|++||++|+|+++|||++|||||+  ++  | ..+++...++++.
T Consensus        79 v~~g~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~  155 (207)
T PRK12553         79 VTAGDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILR  155 (207)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998  31  2 3355555444443

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=1.6e-34  Score=245.23  Aligned_cols=152  Identities=30%  Similarity=0.428  Sum_probs=124.2

Q ss_pred             CCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCC
Q 025057           92 PPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPP  171 (258)
Q Consensus        92 ~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~  171 (258)
                      .++|||++|+++|+|||+++||+++++.++++|++|+.+++.++|+|||||||        |+|++|++|||+|+.++.+
T Consensus         5 ~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG--------G~v~~g~~i~~~i~~~~~~   76 (182)
T PF00574_consen    5 EWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPG--------GDVDAGLAIYDAIRSSKAP   76 (182)
T ss_dssp             EEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE--------BCHHHHHHHHHHHHHSSSE
T ss_pred             EEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC--------CccHHHHHHHHHHHhcCCC
Confidence            45899999999999999999999999999999999999999999999999999        8999999999999999999


Q ss_pred             EEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch---hhHHHHHHHHHHHHHHHHHHhhccccccccCCcchh
Q 025057          172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT---GICLLKSSLTWLNSVKLNVLILSLPICSQLGGLKVK  248 (258)
Q Consensus       172 V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~---~~~~le~~l~~L~~~~~nvyil~~~~~s~l~~~~~~  248 (258)
                      |+|+|.|+|+|+|++|+++|++++|++.|||++|+|||+.+   ...+++...++++.....+. ..+..++++.--+|.
T Consensus        77 v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~-~~~~~~tg~~~~~i~  155 (182)
T PF00574_consen   77 VTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIA-NIYAERTGLSKEEIE  155 (182)
T ss_dssp             EEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHH-HHHHHHHTS-HHHHH
T ss_pred             eEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHH-HHHHHHhCCcHHHHH
Confidence            99999999999999999999999999999999999999873   23466666666554433322 222233444434555


Q ss_pred             hhhc
Q 025057          249 QQMS  252 (258)
Q Consensus       249 ~~~~  252 (258)
                      ..|+
T Consensus       156 ~~~~  159 (182)
T PF00574_consen  156 ELMD  159 (182)
T ss_dssp             HHCS
T ss_pred             HHHh
Confidence            5554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=100.00  E-value=1.7e-33  Score=239.25  Aligned_cols=149  Identities=41%  Similarity=0.597  Sum_probs=125.6

Q ss_pred             ChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEE
Q 025057           95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFT  174 (258)
Q Consensus        95 Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~T  174 (258)
                      |++++||++|+|||+|+|+++++++++++|++++.+++.++|+|||||||        |++++|++|||.|++++.+|+|
T Consensus         1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpG--------G~v~~~~~i~~~l~~~~~~v~t   72 (171)
T cd07017           1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPG--------GSVTAGLAIYDTMQYIKPPVST   72 (171)
T ss_pred             ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCC--------CCHHHHHHHHHHHHhcCCCEEE
Confidence            79999999999999999999999999999999999988899999999999        8999999999999999999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHHHHHHHHhhccccccccCCcchhhhh
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNSVKLNVLILSLPICSQLGGLKVKQQM  251 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~~~~nvyil~~~~~s~l~~~~~~~~~  251 (258)
                      +|.|+|+|+|++|+++|++|+|++.|||++|||||+++.   ..+++...+.++.....+ ...+..++++.--+|.+.|
T Consensus        73 ~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~-~~~~~~~tg~~~~~i~~~~  151 (171)
T cd07017          73 ICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRL-NEILAKHTGQPLEKIEKDT  151 (171)
T ss_pred             EEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHh
Confidence            999999999999999999999999999999999999732   234555544444333222 2222334556556777777


Q ss_pred             c
Q 025057          252 S  252 (258)
Q Consensus       252 ~  252 (258)
                      +
T Consensus       152 ~  152 (171)
T cd07017         152 D  152 (171)
T ss_pred             h
Confidence            4

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.97  E-value=2e-30  Score=219.54  Aligned_cols=140  Identities=27%  Similarity=0.347  Sum_probs=115.4

Q ss_pred             cEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhH
Q 025057          104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGE  183 (258)
Q Consensus       104 RIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASm  183 (258)
                      |+|||+|+|++.++++++++|++|+.+++.++|.|||||||        |++++|++|||+|++++.+|+|+|.|+|+|+
T Consensus         1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpG--------G~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~   72 (162)
T cd07013           1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPG--------GDVFAGMAIYDTIKFIKADVVTIIDGLAASM   72 (162)
T ss_pred             CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCC--------CcHHHHHHHHHHHHhcCCCceEEEEeehhhH
Confidence            89999999999999999999999999999999999999999        8999999999999999999999999999999


Q ss_pred             HHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHHHHHHHHhhccccccccCCcchhhhhc
Q 025057          184 AALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNSVKLNVLILSLPICSQLGGLKVKQQMS  252 (258)
Q Consensus       184 AslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~~~~nvyil~~~~~s~l~~~~~~~~~~  252 (258)
                      |++|+++|++|+|+++||+++|||||+++.   ..+++...++++.....+. .-+..++++.--+|...|+
T Consensus        73 ~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~-~~~a~~tg~~~~~i~~~~~  143 (162)
T cd07013          73 GSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLV-SAYAHKTGQSEEELHADLE  143 (162)
T ss_pred             HHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCcCHHHHHHHHc
Confidence            999999999999999999999999999732   3356655555554444432 2222333433334554443

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.84  E-value=4.9e-20  Score=153.70  Aligned_cols=114  Identities=19%  Similarity=0.205  Sum_probs=98.2

Q ss_pred             EEEeCceeCh---hhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEeeeeh
Q 025057          105 IVYLGMSFVP---SVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAW  181 (258)
Q Consensus       105 IIfLgg~Idd---~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AA  181 (258)
                      -|||+|+|++   ..++.+.+.|.+++.+   ++|.|||||||        |++++|++|||.|+.++.||.|++.|.|+
T Consensus         2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspG--------G~~~~~~~i~~~i~~~~~pvi~~v~g~a~   70 (160)
T cd07016           2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPG--------GDVFAGLAIYNALKRHKGKVTVKIDGLAA   70 (160)
T ss_pred             EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCC--------CCHHHHHHHHHHHHhcCCCEEEEEcchHH
Confidence            5899999999   7999999999988754   89999999999        89999999999999999999999999999


Q ss_pred             hHHHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHHHHHHH
Q 025057          182 GEAALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNSVKLNV  231 (258)
Q Consensus       182 SmAslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~~~~nv  231 (258)
                      |+|++|+++|+  +|++.|+++||+|+|+++.   ..+++...+++++.....
T Consensus        71 s~g~~ia~a~d--~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~  121 (160)
T cd07016          71 SAASVIAMAGD--EVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESI  121 (160)
T ss_pred             hHHHHHHhcCC--eEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHH
Confidence            99999999996  6999999999999998732   235555555555444433

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.73  E-value=3.6e-17  Score=135.62  Aligned_cols=98  Identities=14%  Similarity=0.236  Sum_probs=93.4

Q ss_pred             EEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHH
Q 025057          105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA  184 (258)
Q Consensus       105 IIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmA  184 (258)
                      +|||.|+|++.+.+++++.|..++.+++.+.|.|++||||        |++.++..|++.|+..+.||.+++.|.|+|+|
T Consensus         1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~G--------g~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g   72 (161)
T cd00394           1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPG--------GRVDAGMNIVDALQASRKPVIAYVGGQAASAG   72 (161)
T ss_pred             CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCC--------cCHHHHHHHHHHHHHhCCCEEEEECChhHHHH
Confidence            5899999999999999999999998888899999999999        89999999999999999999999999999999


Q ss_pred             HHHHccCCCCCeeecCCceEeEecCCch
Q 025057          185 ALLLGAGAKGNRAALPSSTIMIKQAGDT  212 (258)
Q Consensus       185 slILaAG~kgkR~alPnSriMIHQP~~~  212 (258)
                      .+|+++|+  +|++.|++++++|+|+.+
T Consensus        73 ~~la~~~d--~~~~~~~a~~~~~g~~~~   98 (161)
T cd00394          73 YYIATAAN--KIVMAPGTRVGSHGPIGG   98 (161)
T ss_pred             HHHHhCCC--EEEECCCCEEEEeeeEEe
Confidence            99999995  799999999999999873

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.71  E-value=5.7e-17  Score=140.21  Aligned_cols=96  Identities=13%  Similarity=0.083  Sum_probs=85.5

Q ss_pred             EEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEe---eeeh
Q 025057          105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAW  181 (258)
Q Consensus       105 IIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~---G~AA  181 (258)
                      .|-+.|.|++..+..+...|-.-+ +++.+.|.|+|||||        |.++++++|||+|++.+.||.|+|.   |+|+
T Consensus         3 vi~i~G~I~~~~~~~l~~~l~~A~-~~~~~~i~l~inSPG--------G~v~~~~~I~~~i~~~~~pvv~~v~p~g~~Aa   73 (172)
T cd07015           3 VAQIKGQITSYTYDQFDRYITIAE-QDNAEAIIIELDTPG--------GRADAAGNIVQRIQQSKIPVIIYVYPPGASAA   73 (172)
T ss_pred             EEEEeeEECHhHHHHHHHHHHHHh-cCCCCeEEEEEECCC--------CCHHHHHHHHHHHHhcCcCEEEEEecCCCeeh
Confidence            466789999888777776665443 456789999999999        8999999999999999999999999   9999


Q ss_pred             hHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057          182 GEAALLLGAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       182 SmAslILaAG~kgkR~alPnSriMIHQP~~  211 (258)
                      |+|++|+++|++  |+|.|+++++.|||..
T Consensus        74 Sag~~I~~a~~~--i~m~p~s~iG~~~pi~  101 (172)
T cd07015          74 SAGTYIALGSHL--IAMAPGTSIGACRPIL  101 (172)
T ss_pred             hHHHHHHHhcCc--eEECCCCEEEEccccc
Confidence            999999999965  9999999999999975

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.62  E-value=2.5e-15  Score=129.43  Aligned_cols=96  Identities=11%  Similarity=0.134  Sum_probs=89.4

Q ss_pred             EEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEe---eeeh
Q 025057          105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAW  181 (258)
Q Consensus       105 IIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~---G~AA  181 (258)
                      +|.|.|+|++..++.+..+|..++.+ +.+.|.|+|||||        |+++++..||+.|..++.||.+.+.   |.|+
T Consensus         3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpG--------G~v~~~~~i~~~l~~~~kPvia~v~~~~G~Aa   73 (187)
T cd07020           3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPG--------GLLDSTREIVQAILASPVPVVVYVYPSGARAA   73 (187)
T ss_pred             EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCC--------CCHHHHHHHHHHHHhCCCCEEEEEecCCCCch
Confidence            57789999999999999999999854 4789999999999        8999999999999999999999998   9999


Q ss_pred             hHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057          182 GEAALLLGAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       182 SmAslILaAG~kgkR~alPnSriMIHQP~~  211 (258)
                      |+|++|+++|+  .|++.|+++|++|+|..
T Consensus        74 sgG~~iala~D--~iva~p~a~~g~~~~~~  101 (187)
T cd07020          74 SAGTYILLAAH--IAAMAPGTNIGAAHPVA  101 (187)
T ss_pred             hHHHHHHHhCC--ceeECCCCcEEeccccc
Confidence            99999999995  58999999999999985

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.44  E-value=1.4e-12  Score=112.94  Aligned_cols=96  Identities=18%  Similarity=0.174  Sum_probs=85.5

Q ss_pred             EEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHH
Q 025057          105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA  184 (258)
Q Consensus       105 IIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmA  184 (258)
                      .|-+.|+|++..+..+...|-....+ +.+.|.|+|||||        |.++++..||+.|+..+.||.+++-|.|+|+|
T Consensus         3 vi~i~g~I~~~~~~~l~~~l~~a~~~-~~~~ivl~inspG--------G~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG   73 (178)
T cd07021           3 VIPIEGEIDPGLAAFVERALKEAKEE-GADAVVLDIDTPG--------GRVDSALEIVDLILNSPIPTIAYVNDRAASAG   73 (178)
T ss_pred             EEEEeeEECHHHHHHHHHHHHHHHhC-CCCeEEEEEECcC--------CCHHHHHHHHHHHHhCCCCEEEEECCchHHHH
Confidence            46788999998888777766555443 4789999999999        89999999999999999999999999999999


Q ss_pred             HHHHccCCCCCeeecCCceEeEecCCc
Q 025057          185 ALLLGAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       185 slILaAG~kgkR~alPnSriMIHQP~~  211 (258)
                      ++|+++++  +++|.|+++++.|+|..
T Consensus        74 ~~ia~a~d--~i~m~p~a~iG~~~~v~   98 (178)
T cd07021          74 ALIALAAD--EIYMAPGATIGAAEPIP   98 (178)
T ss_pred             HHHHHhCC--eEEECCCCeEecCeeEc
Confidence            99999995  69999999999999986

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=98.84  E-value=1.2e-08  Score=88.80  Aligned_cols=90  Identities=18%  Similarity=0.205  Sum_probs=81.3

Q ss_pred             EEEeCceeC---hhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhcc---CCCEEEEEee
Q 025057          105 IVYLGMSFV---PSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFTLCVG  178 (258)
Q Consensus       105 IIfLgg~Id---d~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~i---k~~V~Ti~~G  178 (258)
                      +|++.|+|+   +.+...+..+|..++.++..+-|.|++||||        |++..+..|++.++.+   +.||.+++.|
T Consensus         4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~G--------g~~~~~~~i~~~i~~~~~~~kpvia~v~g   75 (208)
T cd07023           4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPG--------GSVVASEEIYREIRRLRKAKKPVVASMGD   75 (208)
T ss_pred             EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCC--------CCHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence            578899998   7899999999999988778899999999999        7888889999998765   4699999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCceE
Q 025057          179 NAWGEAALLLGAGAKGNRAALPSSTI  204 (258)
Q Consensus       179 ~AASmAslILaAG~kgkR~alPnSri  204 (258)
                      .|+|.|..|+++++  +|++.|++.+
T Consensus        76 ~~~s~g~~lA~aaD--~i~a~~~s~~   99 (208)
T cd07023          76 VAASGGYYIAAAAD--KIVANPTTIT   99 (208)
T ss_pred             cchhHHHHHHhhCC--EEEECCCCeE
Confidence            99999999999995  6999999988

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=98.78  E-value=3.1e-08  Score=86.77  Aligned_cols=89  Identities=20%  Similarity=0.198  Sum_probs=78.4

Q ss_pred             EEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccC--CCEEEEEeeeehh
Q 025057          105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGNAWG  182 (258)
Q Consensus       105 IIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik--~~V~Ti~~G~AAS  182 (258)
                      +|.|.|+|+ .....+...|-.+..++..+.|.|++||||        |++..+..|++.|+.++  .||.+++.|.|+|
T Consensus         4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~G--------g~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s   74 (207)
T TIGR00706         4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPG--------GTVVASEEIYEKLKKLKAKKPVVASMGGVAAS   74 (207)
T ss_pred             EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCC--------CCHHHHHHHHHHHHHhcCCCCEEEEECCccch
Confidence            577888887 456778888887776666789999999999        88999999999999998  8999999999999


Q ss_pred             HHHHHHccCCCCCeeecCCceE
Q 025057          183 EAALLLGAGAKGNRAALPSSTI  204 (258)
Q Consensus       183 mAslILaAG~kgkR~alPnSri  204 (258)
                      .|..|+++++  +|++.|++.+
T Consensus        75 ~g~~la~aaD--~i~a~p~a~v   94 (207)
T TIGR00706        75 GGYYIAMAAD--EIVANPGTIT   94 (207)
T ss_pred             HHHHHHhcCC--EEEECCCCeE
Confidence            9999999995  6999999975

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.65  E-value=8.7e-08  Score=89.69  Aligned_cols=77  Identities=22%  Similarity=0.159  Sum_probs=65.5

Q ss_pred             HHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCC--CEEEEEeeeehhHHHHHHccCCCCC
Q 025057          118 ELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP--PIFTLCVGNAWGEAALLLGAGAKGN  195 (258)
Q Consensus       118 ~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~--~V~Ti~~G~AASmAslILaAG~kgk  195 (258)
                      ..+.+.|-.+...++.+.|-|.|||||        |+|.+..-||+.++.++.  ||+..+-++|||.|-+|.|+++  +
T Consensus        83 ~~~~~~l~~~~~~~~vk~vvL~inSPG--------G~v~as~~i~~~l~~l~~~~PV~v~v~~~AASGGY~IA~aAd--~  152 (317)
T COG0616          83 DDIEEILRAARADPSVKAVVLRINSPG--------GSVVASELIARALKRLRAKKPVVVSVGGYAASGGYYIALAAD--K  152 (317)
T ss_pred             HHHHHHHHHHhcCCCCceEEEEEECcC--------CchhHHHHHHHHHHHHhhcCCEEEEECCeecchhhhhhccCC--E
Confidence            334444444556677899999999999        899999999999999887  5999999999999999999995  6


Q ss_pred             eeecCCceE
Q 025057          196 RAALPSSTI  204 (258)
Q Consensus       196 R~alPnSri  204 (258)
                      .+|-|+|.+
T Consensus       153 I~a~p~si~  161 (317)
T COG0616         153 IVADPSSIT  161 (317)
T ss_pred             EEecCCcee
Confidence            899999964

>cd07014 S49_SppA Signal peptide peptidase A

Probab=98.54  E-value=7.3e-07  Score=75.87  Aligned_cols=87  Identities=20%  Similarity=0.109  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhc---cCCCEEEEEeeeehhHHHHHHccCC
Q 025057          116 VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY---VKPPIFTLCVGNAWGEAALLLGAGA  192 (258)
Q Consensus       116 ~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~---ik~~V~Ti~~G~AASmAslILaAG~  192 (258)
                      ..+.+...|..++.++..+-|.|.+||||        |++.....+++.++.   .+.||...+-|.|+|.|..|+++++
T Consensus        23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~g--------g~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D   94 (177)
T cd07014          23 SGDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPAN   94 (177)
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEEeeCCC--------cCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCC
Confidence            46778888888877777788999999999        777777777776654   4679999999999999999999995


Q ss_pred             CCCeeecCCceEeEecCCch
Q 025057          193 KGNRAALPSSTIMIKQAGDT  212 (258)
Q Consensus       193 kgkR~alPnSriMIHQP~~~  212 (258)
                        .|++.|+++|++|..+.+
T Consensus        95 --~i~a~~~a~~~~~G~~~~  112 (177)
T cd07014          95 --YIVANPSTLVGSIGIFGV  112 (177)
T ss_pred             --EEEECCCCeEEEechHhh
Confidence              699999999999987753

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=98.46  E-value=1e-06  Score=77.43  Aligned_cols=82  Identities=22%  Similarity=0.214  Sum_probs=72.9

Q ss_pred             ChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccC--CCEEEEEeeeehhHHHHHHcc
Q 025057          113 VPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGNAWGEAALLLGA  190 (258)
Q Consensus       113 dd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik--~~V~Ti~~G~AASmAslILaA  190 (258)
                      +......+++.|..++.++.-+-|.|.+||||        |++.....|++.|+.++  .||.+++.|.|+|.|..|+++
T Consensus        23 ~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~g--------g~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~   94 (214)
T cd07022          23 GLTSYEGIAAAIRAALADPDVRAIVLDIDSPG--------GEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASA   94 (214)
T ss_pred             CcccHHHHHHHHHHHhhCCCCcEEEEEEeCCC--------CcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhc
Confidence            34567888988988887777889999999999        78888889999999887  899999999999999999999


Q ss_pred             CCCCCeeecCCceE
Q 025057          191 GAKGNRAALPSSTI  204 (258)
Q Consensus       191 G~kgkR~alPnSri  204 (258)
                      ++  ++++.|++++
T Consensus        95 aD--~i~a~~~a~~  106 (214)
T cd07022          95 AD--RIVVTPTAGV  106 (214)
T ss_pred             CC--EEEEcCCCeE
Confidence            95  6999999995

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=98.39  E-value=1.7e-06  Score=80.75  Aligned_cols=90  Identities=17%  Similarity=0.088  Sum_probs=75.9

Q ss_pred             CceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHH
Q 025057          109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL  188 (258)
Q Consensus       109 gg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslIL  188 (258)
                      ...|+.+.++.+...+-..   +++++|.|.||+||        |.+.++..|.+.++..+.+|..++-..|.|+|++|.
T Consensus        69 ~~~I~i~dse~v~raI~~~---~~~~~IdLii~TpG--------G~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIA  137 (285)
T PF01972_consen   69 YRYIDIDDSEFVLRAIREA---PKDKPIDLIIHTPG--------GLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIA  137 (285)
T ss_pred             ceeEcHhhHHHHHHHHHhc---CCCCceEEEEECCC--------CcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHH
Confidence            3457878888887776533   44678999999999        899999999999999999999999999999999999


Q ss_pred             ccCCCCCeeecCCceEeEecCCc
Q 025057          189 GAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       189 aAG~kgkR~alPnSriMIHQP~~  211 (258)
                      ++++  +-+|.|+|.+===.|..
T Consensus       138 LaAD--eIvM~p~a~LGpiDPqi  158 (285)
T PF01972_consen  138 LAAD--EIVMGPGAVLGPIDPQI  158 (285)
T ss_pred             HhCC--eEEECCCCccCCCCccc
Confidence            9995  57899999876545543

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=98.34  E-value=1.5e-06  Score=87.53  Aligned_cols=90  Identities=19%  Similarity=0.110  Sum_probs=75.3

Q ss_pred             EEEeCceeChh-------hHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhcc---CCCEEE
Q 025057          105 IVYLGMSFVPS-------VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFT  174 (258)
Q Consensus       105 IIfLgg~Idd~-------~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~i---k~~V~T  174 (258)
                      +|++.|+|.+.       ..+.+..+|..+..++.-+.|.|+|||||        |+++++-.|++.|+..   ..||.+
T Consensus       312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpG--------Gs~~ase~i~~~i~~~~~~gKPVva  383 (584)
T TIGR00705       312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPG--------GSVFASEIIRRELARAQARGKPVIV  383 (584)
T ss_pred             EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCC--------CCHHHHHHHHHHHHHHHhCCCcEEE
Confidence            78999999752       24566666666655556689999999999        8899999999999754   368999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceE
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTI  204 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSri  204 (258)
                      .+.|.|+|.|-.|.++|+  ++++.|++.+
T Consensus       384 ~~~g~aaSggY~iA~aaD--~I~a~p~t~~  411 (584)
T TIGR00705       384 SMGAMAASGGYWIASAAD--YIVASPNTIT  411 (584)
T ss_pred             EECCccccHHHHHHHhCC--EEEECCCCee
Confidence            999999999999999995  6999999987

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=98.29  E-value=2.5e-06  Score=74.98  Aligned_cols=79  Identities=20%  Similarity=0.144  Sum_probs=67.3

Q ss_pred             HHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhc---cCCCEEEEEeeeehhHHHHHHccCCC
Q 025057          117 TELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY---VKPPIFTLCVGNAWGEAALLLGAGAK  193 (258)
Q Consensus       117 a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~---ik~~V~Ti~~G~AASmAslILaAG~k  193 (258)
                      ...+...|-.++.++.-+-|.|.+||||        |++.+...+++.|+.   .+.||.+.+.|.|+|.|..|.++++ 
T Consensus        23 ~~~l~~~l~~a~~d~~v~~ivL~~~s~G--------g~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD-   93 (211)
T cd07019          23 GDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPAN-   93 (211)
T ss_pred             HHHHHHHHHHHhhCCCceEEEEEEcCCC--------cCHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCC-
Confidence            4678888888877766799999999999        788888888887654   5679999999999999999999995 


Q ss_pred             CCeeecCCceEe
Q 025057          194 GNRAALPSSTIM  205 (258)
Q Consensus       194 gkR~alPnSriM  205 (258)
                       ++++.|++++-
T Consensus        94 -~i~a~~~a~~g  104 (211)
T cd07019          94 -YIVANPSTLTG  104 (211)
T ss_pred             -EEEEcCCCEEE
Confidence             69999998874

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>PRK11778 putative inner membrane peptidase; Provisional

Probab=97.77  E-value=0.00011  Score=70.04  Aligned_cols=90  Identities=12%  Similarity=0.058  Sum_probs=61.5

Q ss_pred             EEeCceeChhhHHHH---HHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhH---HHHHHHhhccCCCEEEEEeee
Q 025057          106 VYLGMSFVPSVTELI---LAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA---FAIYDVMGYVKPPIFTLCVGN  179 (258)
Q Consensus       106 IfLgg~Idd~~a~~i---iaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aG---lAIYDtm~~ik~~V~Ti~~G~  179 (258)
                      |.+.|+|+...+..+   +..++...  .+.+.|.|.|||||        |+|...   ......++..+.||++...++
T Consensus        95 I~~~G~I~~~~~~~l~e~i~a~l~~A--~~~~aVvLridSpG--------G~v~~s~~a~~~l~~lr~~~kpVva~v~~~  164 (330)
T PRK11778         95 LDFKGDIDASEVESLREEITAILAVA--KPGDEVLLRLESPG--------GVVHGYGLAASQLQRLRDAGIPLTVAVDKV  164 (330)
T ss_pred             EEEEEEECCCcchhhHHHHHHHHHhc--cCCCeEEEEEeCCC--------CchhHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            345688876544333   22233222  23367999999999        677653   222334555567999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          180 AWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       180 AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      |||.|=+|.|+++  +-++.|.+.+-..
T Consensus       165 AASggY~iAsaAD--~I~A~P~a~vGSI  190 (330)
T PRK11778        165 AASGGYMMACVAD--KIIAAPFAIVGSI  190 (330)
T ss_pred             hhhHHHHHHHhCC--EEEECCCCeEEee
Confidence            9999999999995  5799999876543

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=97.64  E-value=0.00013  Score=64.56  Aligned_cols=90  Identities=13%  Similarity=0.050  Sum_probs=75.0

Q ss_pred             ceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhcc---CCCEEEEEeeeehhHHHH
Q 025057          110 MSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFTLCVGNAWGEAAL  186 (258)
Q Consensus       110 g~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~i---k~~V~Ti~~G~AASmAsl  186 (258)
                      ..-+......++..|-.+..++.-+-|.|.|||||        |.+.+.-.|++.|+..   ..||.++..| |+|.|-.
T Consensus        24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~g--------g~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~   94 (222)
T cd07018          24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLS--------GGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYY   94 (222)
T ss_pred             CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCC--------CCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhh
Confidence            34456678889999998887777899999999999        7788889999999754   4689988887 8888889


Q ss_pred             HHccCCCCCeeecCCceEeEecCC
Q 025057          187 LLGAGAKGNRAALPSSTIMIKQAG  210 (258)
Q Consensus       187 ILaAG~kgkR~alPnSriMIHQP~  210 (258)
                      |.++++  ++++.|++.+.+.-..
T Consensus        95 lasaad--~I~a~p~~~vg~iGv~  116 (222)
T cd07018          95 LASAAD--EIYLNPSGSVELTGLS  116 (222)
T ss_pred             hhhhCC--EEEECCCceEEeeccc
Confidence            999985  6899999999997543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>PRK10949 protease 4; Provisional

Probab=97.47  E-value=0.00033  Score=71.53  Aligned_cols=89  Identities=18%  Similarity=0.161  Sum_probs=72.9

Q ss_pred             EEEeCceeChh-------hHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhcc---CCCEEE
Q 025057          105 IVYLGMSFVPS-------VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFT  174 (258)
Q Consensus       105 IIfLgg~Idd~-------~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~i---k~~V~T  174 (258)
                      +|++.|.|.+.       ..+.++.+|-....++.-|-|-|.|||||        |++.+.-.|++.|+..   ..||..
T Consensus       330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpG--------Gs~~ase~i~~~i~~~r~~gKPVva  401 (618)
T PRK10949        330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVV  401 (618)
T ss_pred             EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCC--------CcHHHHHHHHHHHHHHHhcCCcEEE
Confidence            46677777542       24567788877777778899999999999        8899999999999755   368998


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCce
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSST  203 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSr  203 (258)
                      ..-|+|||.|=.|.++++  +-++.|.+.
T Consensus       402 s~~~~aASggY~iA~aad--~I~a~p~t~  428 (618)
T PRK10949        402 SMGGMAASGGYWISTPAN--YIVASPSTL  428 (618)
T ss_pred             EECCCCccHHHHHHHhcC--EEEECCCCc
Confidence            888999999999999995  578889764

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.00039  Score=68.52  Aligned_cols=97  Identities=14%  Similarity=0.159  Sum_probs=81.1

Q ss_pred             cEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEee---ee
Q 025057          104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG---NA  180 (258)
Q Consensus       104 RIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G---~A  180 (258)
                      .++.+.|+|++.+++.+...|-.-+.++ ..-+-+.+|.||        |-+++...|...+...+.||..++.=   .|
T Consensus        29 ~vi~i~g~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ldTPG--------Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~A   99 (436)
T COG1030          29 YVIEIDGAIDPASADYLQRALQSAEEEN-AAAVVLELDTPG--------GLLDSMRQIVRAILNSPVPVIGYVVPDGARA   99 (436)
T ss_pred             EEEEecCccCHHHHHHHHHHHHHHHhCC-CcEEEEEecCCC--------chHHHHHHHHHHHHcCCCCEEEEEcCCCcch
Confidence            3567899999999999998887554433 478999999999        88999999999999999998777653   69


Q ss_pred             hhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057          181 WGEAALLLGAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       181 ASmAslILaAG~kgkR~alPnSriMIHQP~~  211 (258)
                      ||+|+.|+++.+.  -+|.|.+.+==-||-.
T Consensus       100 aSAGtyI~m~~hi--aaMAPgT~iGaa~Pi~  128 (436)
T COG1030         100 ASAGTYILMATHI--AAMAPGTNIGAATPIA  128 (436)
T ss_pred             hchhhHHHHhcCh--hhhCCCCcccccceec
Confidence            9999999999964  5788998887777754

>COG3904 Predicted periplasmic protein [Function unknown]

Probab=95.93  E-value=0.018  Score=52.64  Aligned_cols=96  Identities=15%  Similarity=0.034  Sum_probs=73.2

Q ss_pred             EEeCceeChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHH
Q 025057          106 VYLGMSFVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA  184 (258)
Q Consensus       106 IfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmA  184 (258)
                      |-+.+++-+.-+....+.|..   .....-+. +-+||||        |+|.++++.=-.++..+-++..-...+|+|.-
T Consensus        79 VvVse~~a~~da~sal~~lir---~~G~y~~t~v~lnSpG--------Gsv~kA~~mgkLiRe~gfdt~v~s~A~CasaC  147 (245)
T COG3904          79 VVVSEPGANVDAASALGRLIR---KAGLYIATGVTLNSPG--------GSVAKACSMGKLIREDGFDTAVDSGAMCASAC  147 (245)
T ss_pred             EEEcCCCCCccHHHHHHHHHh---ccCceeEEEEEecCCC--------CcHHHHHhhhhhhhhcccCccccchhhhhccc
Confidence            344555544444445555552   12223344 6789999        89999999999999998888888888999999


Q ss_pred             HHHHccCCCCCeeecCCceEeEecCCchhh
Q 025057          185 ALLLGAGAKGNRAALPSSTIMIKQAGDTGI  214 (258)
Q Consensus       185 slILaAG~kgkR~alPnSriMIHQP~~~~~  214 (258)
                      .++|++|  ..|++-+.+.|=+||+..++.
T Consensus       148 pl~fagG--vrRvve~~ayiGVHq~~~~g~  175 (245)
T COG3904         148 PLMFAGG--VRRVVEDFAYIGVHQITTTGR  175 (245)
T ss_pred             hhhhhcc--eeeeecccceeeeeeccccCC
Confidence            9999999  569999999999999998653

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=95.47  E-value=0.047  Score=52.09  Aligned_cols=103  Identities=20%  Similarity=0.253  Sum_probs=73.9

Q ss_pred             cCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCC--CCccccHhhHHHHHHHh---hccCCCEEEEE
Q 025057          102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVM---GYVKPPIFTLC  176 (258)
Q Consensus       102 ~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~--~~~~G~v~aGlAIYDtm---~~ik~~V~Ti~  176 (258)
                      ++|+-..+|-++++....... |..|... -.-||--+||+||.-.+  -|..|.   +-+|...+   ...+.|+.+++
T Consensus       122 ~e~~~~~~G~~~p~g~rKa~R-~m~lA~~-f~iPvVtlvDTpGa~~g~~aE~~G~---~~aia~~l~a~s~~~VP~IsVV  196 (316)
T TIGR00513       122 KEKLRRNFGMPAPEGYRKALR-LMKMAER-FKMPIITFIDTPGAYPGIGAEERGQ---SEAIARNLREMARLGVPVICTV  196 (316)
T ss_pred             cccccccCCCCCHHHHHHHHH-HHHHHHH-cCCCEEEEEECCCCCCCHHHHHHHH---HHHHHHHHHHHHcCCCCEEEEE
Confidence            567667778888877766654 4444433 35799999999994321  111122   23454444   56678999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~  211 (258)
                      +|-++|.|++.++.+  +..+|+||+.+.+=.|.+
T Consensus       197 iGeggsGGAla~~~a--D~v~m~~~a~~sVisPEg  229 (316)
T TIGR00513       197 IGEGGSGGALAIGVG--DKVNMLEYSTYSVISPEG  229 (316)
T ss_pred             ecccccHHHhhhccC--CEEEEecCceEEecCHHH
Confidence            999999999888767  468999999999998886

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=95.26  E-value=0.11  Score=47.98  Aligned_cols=101  Identities=17%  Similarity=0.178  Sum_probs=73.4

Q ss_pred             cCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHh--h--HHHHHHHh---hccCCCEEE
Q 025057          102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET--E--AFAIYDVM---GYVKPPIFT  174 (258)
Q Consensus       102 ~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~--a--GlAIYDtm---~~ik~~V~T  174 (258)
                      ++++...+|-++++-...... +..|..+. .-||--.+||||.-.     |...  .  +-+|...+   ...+.|+.+
T Consensus        69 ~d~~~~~~G~~~~~g~rKa~R-~~~lA~~~-~lPvV~lvDtpGa~~-----g~~aE~~G~~~~ia~~~~~~s~~~VP~Is  141 (256)
T PRK12319         69 QDNLKRNFGQPHPEGYRKALR-LMKQAEKF-GRPVVTFINTAGAYP-----GVGAEERGQGEAIARNLMEMSDLKVPIIA  141 (256)
T ss_pred             ccceeeeCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEECCCcCC-----CHhHHhccHHHHHHHHHHHHhCCCCCEEE
Confidence            566666778888887666654 54454333 579999999999432     2211  1  23444443   455789999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~  211 (258)
                      +++|-++|.|++.++.+  +..+|.|++.+.+=.|.+
T Consensus       142 VI~G~~~gGgA~a~~~~--D~v~m~~~a~~~v~~pe~  176 (256)
T PRK12319        142 IIIGEGGSGGALALAVA--DQVWMLENTMYAVLSPEG  176 (256)
T ss_pred             EEeCCcCcHHHHHhhcC--CEEEEecCceEEEcCHHH
Confidence            99999999999999877  468999999999998876

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=95.13  E-value=0.12  Score=43.60  Aligned_cols=96  Identities=13%  Similarity=0.131  Sum_probs=65.6

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CC-C-------------ccccHhhHHHHHHHhhccCCCEEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GG-E-------------KLGYETEAFAIYDVMGYVKPPIFTL  175 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~-~-------------~~G~v~aGlAIYDtm~~ik~~V~Ti  175 (258)
                      .++.++.+++...|..++.++..+  -+.|.+.|+.. .| .             ....+.....++..+...+.||.+.
T Consensus        22 ~~~~~~~~~l~~~l~~~~~d~~~~--~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~   99 (195)
T cd06558          22 ALSLEMLDELAAALDEAEADPDVR--VVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAA   99 (195)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            357788888888888777533333  23333333211 11 0             0012334466677777889999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCceEeEecCC
Q 025057          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAG  210 (258)
Q Consensus       176 ~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~  210 (258)
                      +-|.|.+.|+.+++++  +.|++.++++|.+..+.
T Consensus       100 v~G~a~g~G~~la~~~--D~~i~~~~~~~~~pe~~  132 (195)
T cd06558         100 VNGAALGGGLELALAC--DIRIAAEDAKFGLPEVK  132 (195)
T ss_pred             ECCeeecHHHHHHHhC--CEEEecCCCEEechhhh
Confidence            9999999999999998  57999999999887643

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=95.04  E-value=0.073  Score=50.97  Aligned_cols=101  Identities=20%  Similarity=0.169  Sum_probs=73.1

Q ss_pred             cCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcccc--Hh--hHHHHHHH---hhccCCCEEE
Q 025057          102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY--ET--EAFAIYDV---MGYVKPPIFT  174 (258)
Q Consensus       102 ~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~--v~--aGlAIYDt---m~~ik~~V~T  174 (258)
                      ++|+-..+|-.+++....... +..|.... .-||--+|++||.-.     |.  ..  .+-+|...   |...+.|+.+
T Consensus       125 ~e~~~~~~G~~~p~g~rKa~R-lm~lA~~f-~lPIItlvDTpGA~~-----G~~AE~~G~~~aiar~l~~~a~~~VP~Is  197 (322)
T CHL00198        125 KENVLRNFGMPSPGGYRKALR-LMKHANKF-GLPILTFIDTPGAWA-----GVKAEKLGQGEAIAVNLREMFSFEVPIIC  197 (322)
T ss_pred             hhhhhhcCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEeCCCcCc-----CHHHHHHhHHHHHHHHHHHHHcCCCCEEE
Confidence            566545567788877776664 44444332 579999999999432     21  11  13345544   4567789999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~  211 (258)
                      +++|-++|.|++.++.+  +..+|++||.+.+=.|.+
T Consensus       198 VViGeggsGGAlal~~a--D~V~m~e~a~~sVisPEg  232 (322)
T CHL00198        198 TIIGEGGSGGALGIGIG--DSIMMLEYAVYTVATPEA  232 (322)
T ss_pred             EEeCcccHHHHHhhhcC--CeEEEeCCeEEEecCHHH
Confidence            99999999999888877  568999999999999976

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=95.03  E-value=0.12  Score=49.44  Aligned_cols=107  Identities=21%  Similarity=0.223  Sum_probs=75.3

Q ss_pred             hcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCC--CCccccHhhHHHHHHHhhccCCCEEEEEee
Q 025057          101 YKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVG  178 (258)
Q Consensus       101 l~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~--~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G  178 (258)
                      .++++-..+|-++++....... +..+... -.-||--.|++||.-.+  -|.-|...++......|...+.|+.++++|
T Consensus       121 ~~e~~~~~~G~~~peg~rKa~R-~m~lA~~-f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiG  198 (319)
T PRK05724        121 TKEKIRRNFGMPRPEGYRKALR-LMKMAEK-FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIG  198 (319)
T ss_pred             ccccccccCCCCCHHHHHHHHH-HHHHHHH-cCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            4777777888898887766654 4444332 35799999999994321  011122222223344445777899999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057          179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       179 ~AASmAslILaAG~kgkR~alPnSriMIHQP~~  211 (258)
                      -++|.|++.++.+  +..+|+|++.+.+=.|.+
T Consensus       199 eg~sGGAla~~~a--D~v~m~~~A~~svisPEg  229 (319)
T PRK05724        199 EGGSGGALAIGVG--DRVLMLEYSTYSVISPEG  229 (319)
T ss_pred             CccHHHHHHHhcc--CeeeeecCceEeecCHHH
Confidence            9999999888877  458999999999988876

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=94.71  E-value=0.13  Score=54.12  Aligned_cols=103  Identities=21%  Similarity=0.256  Sum_probs=72.1

Q ss_pred             cCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCC--CCccccHhhHHHHHHHh---hccCCCEEEEE
Q 025057          102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVM---GYVKPPIFTLC  176 (258)
Q Consensus       102 ~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~--~~~~G~v~aGlAIYDtm---~~ik~~V~Ti~  176 (258)
                      ++|+-..+|-.+++-...... |..+... -.-||--+|++||.-.+  -|..|.   +-+|...+   -....|+.+++
T Consensus       213 ke~~~rnfG~~~peGyRKAlR-lmkLAek-fgLPIVtLVDTpGA~pG~~AEe~Gq---~~aIArnl~amasl~VP~ISVV  287 (762)
T PLN03229        213 KENIMRNFGMPTPHGYRKALR-MMYYADH-HGFPIVTFIDTPGAYADLKSEELGQ---GEAIAHNLRTMFGLKVPIVSIV  287 (762)
T ss_pred             cccccccCCCCCHHHHHHHHH-HHHHHHH-cCCCEEEEEECCCcCCCchhHHHhH---HHHHHHHHHHHhCCCCCEEEEE
Confidence            555666677777776665554 4444332 25799999999995321  111222   33454444   46678999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~  211 (258)
                      +|-++|.|++.++.++  ..+|+||+.+.+=-|.+
T Consensus       288 iGeggSGGAlA~g~aD--~VlMle~A~~sVisPEg  320 (762)
T PLN03229        288 IGEGGSGGALAIGCAN--KLLMLENAVFYVASPEA  320 (762)
T ss_pred             eCCcchHHHHHhhcCC--EEEEecCCeEEecCHHH
Confidence            9999999999998884  58999999999888876

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=94.04  E-value=0.19  Score=49.84  Aligned_cols=103  Identities=18%  Similarity=0.192  Sum_probs=70.6

Q ss_pred             cCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHh--hHHHHHHHh---hccCCCEEEEE
Q 025057          102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET--EAFAIYDVM---GYVKPPIFTLC  176 (258)
Q Consensus       102 ~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~--aGlAIYDtm---~~ik~~V~Ti~  176 (258)
                      ++|+--..|-++++-...... |+.|... -.-||--+||+||...+-   +...  .+-+|...+   ...+.|+.+++
T Consensus       192 ke~~~rnfG~~~peGyRKAlR-~mklAek-f~lPIVtLVDTpGA~pG~---~AEe~Gqa~aIAr~l~ams~l~VPiISVV  266 (431)
T PLN03230        192 KENIYRNFAMPQPNGYRKALR-FMRHAEK-FGFPILTFVDTPGAYAGI---KAEELGQGEAIAFNLREMFGLRVPIIATV  266 (431)
T ss_pred             ccccccCCCCCCHHHHHHHHH-HHHHHHH-cCCCEEEEEeCCCcCCCH---HHHHHhHHHHHHHHHHHHhcCCCCEEEEE
Confidence            344333346777877766664 4434332 257999999999943210   1111  123455444   46678999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~  211 (258)
                      +|-++|.|++.+++|+  ..+|+||+.+.+=.|.+
T Consensus       267 iGeGgSGGAlalg~aD--~VlMle~A~ysVisPEg  299 (431)
T PLN03230        267 IGEGGSGGALAIGCGN--RMLMMENAVYYVASPEA  299 (431)
T ss_pred             eCCCCcHHHHHhhcCC--EEEEecCCEEEecCHHH
Confidence            9999999999998884  68999999999988875

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=93.47  E-value=0.33  Score=44.51  Aligned_cols=99  Identities=17%  Similarity=0.192  Sum_probs=62.9

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHH---HHHHhhccCCCEEEEEeeeehhHHHH
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFA---IYDVMGYVKPPIFTLCVGNAWGEAAL  186 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlA---IYDtm~~ik~~V~Ti~~G~AASmAsl  186 (258)
                      ++-+-+.....-+...-..+...||-..+++||-..  .-|..|-.-++-.   -|..++..+.|+.++++|.+.|.|.+
T Consensus        45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l  124 (238)
T TIGR03134        45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL  124 (238)
T ss_pred             CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence            443344444433333211235789999999999542  2233343333333   33444455599999999999998877


Q ss_pred             HHccCCCCCeeecCCceEeEecCCc
Q 025057          187 LLGAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       187 ILaAG~kgkR~alPnSriMIHQP~~  211 (258)
                      -+..+ .+..+++|++.+-.=.|.+
T Consensus       125 amg~~-ad~v~Alp~A~i~vm~~e~  148 (238)
T TIGR03134       125 AHGLQ-ADRIIALPGAMVHVMDLES  148 (238)
T ss_pred             HHccC-cCeEEEcCCcEEEecCHHH
Confidence            77533 2578999999988877765

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=92.40  E-value=1.5  Score=39.44  Aligned_cols=92  Identities=13%  Similarity=0.097  Sum_probs=61.9

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCcccc---------------HhhHHHHHHHhhccCCCEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY---------------ETEAFAIYDVMGYVKPPIFT  174 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~---------------v~aGlAIYDtm~~ik~~V~T  174 (258)
                      ++.++..++.+.|-.++.+   +++. |.|.+.|... .|-.+..               ......+++.|...+.||..
T Consensus        27 l~~~~~~~l~~~l~~~~~d---~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIA  103 (260)
T PRK07511         27 LHPDMYAAGIEALNTAERD---PSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIA  103 (260)
T ss_pred             CCHHHHHHHHHHHHHhccC---CCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            6778888888888776643   3343 4445544321 2211110               11113466777888999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      .+-|.|.+.|..|++++  +.|++.++++|-+..
T Consensus       104 av~G~a~GgG~~lala~--D~~ia~~~a~f~~pe  135 (260)
T PRK07511        104 AVEGAAAGAGFSLALAC--DLLVAARDAKFVMAY  135 (260)
T ss_pred             EECCeeehHHHHHHHhC--CEEEeeCCCEEeccc
Confidence            99999999999999999  468999998887644

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=92.05  E-value=0.66  Score=41.05  Aligned_cols=95  Identities=15%  Similarity=0.071  Sum_probs=67.2

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH------------hhHHHHHHHhhccCCCEEEEEe
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLCV  177 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v------------~aGlAIYDtm~~ik~~V~Ti~~  177 (258)
                      .++.++.+++...|..++.++..+  -+.|.+.|+.. .|-.+..+            .....++..|...+.||...+-
T Consensus        21 ~l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~   98 (245)
T PF00378_consen   21 ALNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVN   98 (245)
T ss_dssp             EBSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEES
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeeccc
Confidence            468888899999888887654333  45555555322 22111111            3345678888899999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       178 G~AASmAslILaAG~kgkR~alPnSriMIHQP~~  211 (258)
                      |.|.+.|+.|++++  +.|++.+++.|-  .|..
T Consensus        99 G~a~GgG~~lala~--D~~ia~~~a~f~--~pe~  128 (245)
T PF00378_consen   99 GHAVGGGFELALAC--DFRIAAEDAKFG--FPEV  128 (245)
T ss_dssp             SEEETHHHHHHHHS--SEEEEETTTEEE--TGGG
T ss_pred             cccccccccccccc--ceEEeeccccee--eeec
Confidence            99999999999999  579999999944  4554

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=92.01  E-value=1.4  Score=39.52  Aligned_cols=92  Identities=11%  Similarity=0.085  Sum_probs=62.7

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCcccc-----------HhhHHHHHHHhhccCCCEEEEEee
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY-----------ETEAFAIYDVMGYVKPPIFTLCVG  178 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~-----------v~aGlAIYDtm~~ik~~V~Ti~~G  178 (258)
                      ++.++.+.+...|..++.++   ++. +.|.+.|... .|-.+..           ......+++.|...+.||...+-|
T Consensus        29 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G  105 (259)
T PRK06688         29 LTAAMYQALADALEAAATDP---AVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNG  105 (259)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence            68888888888888776533   233 3334444221 1111110           112345677788889999999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       179 ~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      .|.+.|.-|+++++  .|++.++++|-+..
T Consensus       106 ~a~GgG~~lal~cD--~ria~~~a~f~~pe  133 (259)
T PRK06688        106 PAVGVGVSLALACD--LVYASESAKFSLPF  133 (259)
T ss_pred             eeecHHHHHHHhCC--EEEecCCCEecCch
Confidence            99999999999994  68999988877744

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=89.99  E-value=1.5  Score=44.23  Aligned_cols=102  Identities=16%  Similarity=0.192  Sum_probs=71.8

Q ss_pred             eCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHHH
Q 025057          108 LGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA  185 (258)
Q Consensus       108 Lgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAs  185 (258)
                      ++|.++.+.++.+.. ++.+... -.-||-..+||||-..  .-|.-|-+..+-.+++.+.....|..+|++|.+++.|.
T Consensus       327 ~~G~~~~~~~~K~~r-~i~~a~~-~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~  404 (512)
T TIGR01117       327 MAGCLDIDSSDKIAR-FIRFCDA-FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAY  404 (512)
T ss_pred             ccCCCCHHHHHHHHH-HHHHHHH-cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHH
Confidence            357788887777765 4444433 3679999999999321  11111345566677777777888999999999999876


Q ss_pred             HHHccC--CCCCeeecCCceEeEecCCc
Q 025057          186 LLLGAG--AKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       186 lILaAG--~kgkR~alPnSriMIHQP~~  211 (258)
                      +.+++.  .....++.|++++-+=.|.+
T Consensus       405 ~am~~~~~~~d~~~a~p~a~~~v~~pe~  432 (512)
T TIGR01117       405 LAMCSKHLGADQVYAWPTAEIAVMGPAG  432 (512)
T ss_pred             HHhccccCCCCEEEEcCCCeEeecCHHH
Confidence            665531  23568899999999988876

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=89.95  E-value=1.1  Score=45.92  Aligned_cols=86  Identities=7%  Similarity=-0.030  Sum_probs=63.7

Q ss_pred             hhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccC---CCEEEEEeeeehhHHHHHHcc
Q 025057          114 PSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVGNAWGEAALLLGA  190 (258)
Q Consensus       114 d~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik---~~V~Ti~~G~AASmAslILaA  190 (258)
                      +.....++.+|-....++.-+-|.|.||+++|       |.+...-.|++.|+..+   .||..+..+ ++|.+=+|.++
T Consensus        75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g-------~~~~~~~ei~~ai~~fk~sgKpVvA~~~~-~~s~~YylAs~  146 (584)
T TIGR00705        75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSG-------WDSPHLVEIGSALSEFKDSGKPVYAYGTN-YSQGQYYLASF  146 (584)
T ss_pred             CcCHHHHHHHHHHHhcCCCceEEEEEccCCCC-------CCHHHHHHHHHHHHHHHhcCCeEEEEEcc-ccchhhhhhhh
Confidence            44677899999888888888999999997542       56777778999988654   688887654 34545455555


Q ss_pred             CCCCCeeecCCceEeEecC
Q 025057          191 GAKGNRAALPSSTIMIKQA  209 (258)
Q Consensus       191 G~kgkR~alPnSriMIHQP  209 (258)
                      +  ++-++.|.+.+.++-.
T Consensus       147 A--D~I~~~p~G~v~~~G~  163 (584)
T TIGR00705       147 A--DEIILNPMGSVDLHGF  163 (584)
T ss_pred             C--CEEEECCCceEEeece
Confidence            5  4689999999977643

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PRK05869 enoyl-CoA hydratase; Validated

Probab=89.45  E-value=3.6  Score=36.56  Aligned_cols=93  Identities=15%  Similarity=0.069  Sum_probs=62.2

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH-----------hhH-HHHHHHhhccCCCEEEEEee
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE-----------TEA-FAIYDVMGYVKPPIFTLCVG  178 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v-----------~aG-lAIYDtm~~ik~~V~Ti~~G  178 (258)
                      ++.++...+...|..++.++..+  -+.|.+.|... .|-.+..+           ... ..+++.|...+.||.+.+-|
T Consensus        31 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G  108 (222)
T PRK05869         31 LTRQVYREIVAAANELGRRDDVA--AVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITG  108 (222)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            67788888888888777543222  23445544321 11110111           111 24667788889999999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       179 ~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      .|.+.|..|.++++  .|++.++++|-+-.
T Consensus       109 ~a~GgG~~lalacD--~ria~~~a~f~~pe  136 (222)
T PRK05869        109 YALGAGLTLALAAD--WRVSGDNVKFGATE  136 (222)
T ss_pred             EeecHHHHHHHhCC--EEEecCCCEEcCch
Confidence            99999999999995  69999988876633

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=89.09  E-value=2.7  Score=37.91  Aligned_cols=90  Identities=16%  Similarity=0.138  Sum_probs=59.0

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEE-EEecCCC-CC-CCCccccH-----------hhHHHHHHHhhccCCCEEEEEe
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYL-YINSTGT-TK-GGEKLGYE-----------TEAFAIYDVMGYVKPPIFTLCV  177 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~L-yINSpGg-~~-~~~~~G~v-----------~aGlAIYDtm~~ik~~V~Ti~~  177 (258)
                      ++.++...+...|-.++.+   .+|.. .+.+.|+ .. .|-.+..+           ......+..|..++.||...+-
T Consensus        26 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  102 (261)
T PRK03580         26 IDAKTSFAMGEVFLNFRDD---PELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVN  102 (261)
T ss_pred             CCHHHHHHHHHHHHHHHhC---CCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEEC
Confidence            6777888888877766642   34443 3344442 11 12111100           0123456677888999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          178 GNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       178 G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      |.|.+.|.-|+++++  -|++.++++|-+
T Consensus       103 G~a~GgG~~lalacD--~~ia~~~a~f~~  129 (261)
T PRK03580        103 GYAFGGGFELALAAD--FIVCADNASFAL  129 (261)
T ss_pred             CeeehHHHHHHHHCC--EEEecCCCEEeC
Confidence            999999999999994  688888887754

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=88.91  E-value=3.8  Score=36.77  Aligned_cols=89  Identities=9%  Similarity=0.070  Sum_probs=60.8

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEE-EecCCCCC-CCCccccHhh------------HHHHHHHhhccCCCEEEEEe
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTGTTK-GGEKLGYETE------------AFAIYDVMGYVKPPIFTLCV  177 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~Ly-INSpGg~~-~~~~~G~v~a------------GlAIYDtm~~ik~~V~Ti~~  177 (258)
                      ++.++.+.+.+.+..++.+   .++.+. |-+.|... .|   +|+.+            ...++..|...+.||...+-
T Consensus        24 l~~~~~~~l~~a~~~~~~d---~~vr~vVl~g~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~   97 (248)
T PRK06072         24 LNLEMRNEFISKLKQINAD---PKIRVVIVTGEGRAFCVG---ADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAIN   97 (248)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCcccC---cCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            6788888888888777643   345433 34444221 22   22211            12355667788899999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       178 G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      |.|.+.|.-|+++++  -|++.++++|-+..
T Consensus        98 G~a~GgG~~lal~cD--~~ia~~~a~f~~~~  126 (248)
T PRK06072         98 GVTAGACIGIALSTD--FKFASRDVKFVTAF  126 (248)
T ss_pred             CeeehHHHHHHHhCC--EEEEcCCCEEecch
Confidence            999999999999984  68999998887644

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=88.83  E-value=4  Score=37.22  Aligned_cols=93  Identities=17%  Similarity=0.143  Sum_probs=61.9

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH---------h-------hHHHHHHHhhccCCCEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------T-------EAFAIYDVMGYVKPPIF  173 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v---------~-------aGlAIYDtm~~ik~~V~  173 (258)
                      ++.++..++.+.|-.++.+   .++. |.|.+.|... .|-.+..+         .       ....+++.|...+.||.
T Consensus        41 l~~~~~~eL~~~l~~~~~d---~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  117 (277)
T PRK08258         41 LTFESYAELRDLFRELVYA---DDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPII  117 (277)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            6777888888877766643   2343 3444444221 12111111         0       01246677888899999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeEecC
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQA  209 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP  209 (258)
                      ..+-|.|.+.|.-|+++++  -|++.++++|-+...
T Consensus       118 AaV~G~a~GgG~~LalacD--~ria~~~a~f~~pe~  151 (277)
T PRK08258        118 AAVDGVCAGAGAILAMASD--LRLGTPSAKTAFLFT  151 (277)
T ss_pred             EEECCeeehHHHHHHHhCC--EEEecCCCEEecccc
Confidence            9999999999999999994  699999998877554

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=88.49  E-value=4.9  Score=36.11  Aligned_cols=90  Identities=19%  Similarity=0.137  Sum_probs=60.3

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh----------------hHHHHHHHhhccCCCEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET----------------EAFAIYDVMGYVKPPIF  173 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~----------------aGlAIYDtm~~ik~~V~  173 (258)
                      ++.++...+.+.|..++.+   +++. |.|.+.|... .|-.+..+.                ....+++.|..++.||.
T Consensus        26 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  102 (255)
T PRK07260         26 FNIPMCQEILEALRLAEED---PSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVI  102 (255)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEE
Confidence            5777778888777766643   2333 3345555331 121111100                11235567778899999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      ..+-|.|.+.|..|+++++  -|++.++++|-+
T Consensus       103 aav~G~a~GgG~~lala~D--~ria~~~a~f~~  133 (255)
T PRK07260        103 MCVDGAVAGAAANMAVAAD--FCIASTKTKFIQ  133 (255)
T ss_pred             EEecCeeehhhHHHHHhCC--EEEEeCCCEEec
Confidence            9999999999999999995  699999998775

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=88.37  E-value=4  Score=36.85  Aligned_cols=90  Identities=13%  Similarity=0.100  Sum_probs=59.0

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH--------hh-HHHHHHHhhccCCCEEEEEeeee
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE--------TE-AFAIYDVMGYVKPPIFTLCVGNA  180 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v--------~a-GlAIYDtm~~ik~~V~Ti~~G~A  180 (258)
                      ++.++...+.+.|..++.++   ++. +.|-+.|... .|..++.+        .. ...+++.|...+.||...+-|.|
T Consensus        24 l~~~~~~~l~~~l~~~~~~~---~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  100 (251)
T TIGR03189        24 VDAAMIAALSAALGEHLEDS---ALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQC  100 (251)
T ss_pred             CCHHHHHHHHHHHHHHHcCC---CceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCee
Confidence            68888888888888776433   333 4444444321 22111110        00 12355667788999999999999


Q ss_pred             hhHHHHHHccCCCCCeeecCCceEeE
Q 025057          181 WGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       181 ASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      .+.|.-|.++++  -|++.++++|-+
T Consensus       101 ~GgG~~lal~cD--~~ia~~~a~f~~  124 (251)
T TIGR03189       101 LGGGLEVAAAGN--LMFAAPDAKLGQ  124 (251)
T ss_pred             eeHHHHHHHhCC--EEEEcCCCEEeC
Confidence            999999999984  588888877655

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK10949 protease 4; Provisional

Probab=88.10  E-value=1.5  Score=45.24  Aligned_cols=88  Identities=10%  Similarity=0.107  Sum_probs=63.3

Q ss_pred             hhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccC---CCEEEEEeeeehhHHHHHHcc
Q 025057          114 PSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVGNAWGEAALLLGA  190 (258)
Q Consensus       114 d~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik---~~V~Ti~~G~AASmAslILaA  190 (258)
                      +....+++..|-....++.-+-|.|.||||||       +.....-.|++.|+..+   .||..+  |-.++.+...+++
T Consensus        94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG-------~~~a~~~eI~~ai~~fk~sGKpVvA~--~~~~~s~~YyLAS  164 (618)
T PRK10949         94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAG-------ADQPSMQYIGKALREFRDSGKPVYAV--GDSYSQGQYYLAS  164 (618)
T ss_pred             cccHHHHHHHHHHHhcCCCceEEEEEeCCCCC-------ccHHHHHHHHHHHHHHHHhCCeEEEE--ecCccchhhhhhh
Confidence            45567889889888888888999999999983       22334467888887654   477664  5555666666655


Q ss_pred             CCCCCeeecCCceEeEecCCc
Q 025057          191 GAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       191 G~kgkR~alPnSriMIHQP~~  211 (258)
                      +. ++-++.|.+.+.++-...
T Consensus       165 aA-D~I~l~P~G~v~~~G~~~  184 (618)
T PRK10949        165 FA-NKIYLSPQGVVDLHGFAT  184 (618)
T ss_pred             hC-CEEEECCCceEEEeeeec
Confidence            43 568999999998876443

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=87.78  E-value=3.8  Score=36.73  Aligned_cols=89  Identities=15%  Similarity=0.151  Sum_probs=58.8

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCcccc-------HhhHHHHHHHhhccCCCEEEEEeeeehh
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY-------ETEAFAIYDVMGYVKPPIFTLCVGNAWG  182 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~-------v~aGlAIYDtm~~ik~~V~Ti~~G~AAS  182 (258)
                      ++.++..++...+..++. +   ++. +.|-+.|... .|-.+..       ......+++.|...+.||...+-|.|.+
T Consensus        24 l~~~~~~~l~~al~~~~~-~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~G   99 (243)
T PRK07854         24 LNAELCEELREAVRKAVD-E---SARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIG   99 (243)
T ss_pred             CCHHHHHHHHHHHHHHhc-C---CceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Confidence            678888888887776652 2   333 3444444221 1111110       0112345667778899999999999999


Q ss_pred             HHHHHHccCCCCCeeecCCceEeE
Q 025057          183 EAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       183 mAslILaAG~kgkR~alPnSriMI  206 (258)
                      .|.-|+++++  -|++.++++|-+
T Consensus       100 gG~~lal~cD--~~ia~~~a~f~~  121 (243)
T PRK07854        100 AGLQLAMACD--LRVVAPEAYFQF  121 (243)
T ss_pred             cHHHHHHhCC--EEEEcCCCEEec
Confidence            9999999994  588888888764

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=87.68  E-value=4.1  Score=36.87  Aligned_cols=93  Identities=13%  Similarity=0.158  Sum_probs=62.2

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh----------------------hHHHHHHHhhc
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET----------------------EAFAIYDVMGY  167 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~----------------------aGlAIYDtm~~  167 (258)
                      ++.++...+.+.|..++.+   .++. +.|-+.|... .|-.+..+.                      .....++.|..
T Consensus        30 l~~~~~~~L~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  106 (272)
T PRK06210         30 WTPVMEAEVYAAMDRAEAD---PAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTA  106 (272)
T ss_pred             CCHHHHHHHHHHHHHhccC---CCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHh
Confidence            6888888888888877643   2343 3334444221 221111100                      01223567788


Q ss_pred             cCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecC
Q 025057          168 VKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQA  209 (258)
Q Consensus       168 ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP  209 (258)
                      ++.||...+-|.|.+.|.-|+++++  .|++.++++|-+..+
T Consensus       107 ~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~  146 (272)
T PRK06210        107 LRKPVIAAINGACAGIGLTHALMCD--VRFAADGAKFTTAFA  146 (272)
T ss_pred             CCCCEEEEECCeeehHHHHHHHhCC--EEEEeCCCEEechHH
Confidence            8999999999999999999999994  699999999876544

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=87.65  E-value=5  Score=36.16  Aligned_cols=91  Identities=15%  Similarity=0.148  Sum_probs=60.9

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCC-CC-CCCccccH--------h----hHHHHHHHhhccCCCEEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE--------T----EAFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg-~~-~~~~~G~v--------~----aGlAIYDtm~~ik~~V~Ti~  176 (258)
                      ++.++...+.+.|..++.+   .++. +.|.+.|+ .. .|-.+..+        .    ....+++.|...+.||...+
T Consensus        28 l~~~~~~~l~~al~~~~~d---~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav  104 (260)
T PRK07657         28 LSLALLEELQNILTQINEE---ANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAI  104 (260)
T ss_pred             CCHHHHHHHHHHHHHHHhC---CCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            6778888888888776643   3344 44455453 21 22111111        0    01235667778899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      -|.|.+.|.-|.++++  -|++.++++|-+-
T Consensus       105 ~G~a~GgG~~lal~cD--~~ia~~~a~f~~p  133 (260)
T PRK07657        105 NGIALGGGLELALACD--FRIAAESASLGLT  133 (260)
T ss_pred             cCEeechHHHHHHhCC--EEEeeCCCEEcCc
Confidence            9999999999999994  6899988877653

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=87.38  E-value=5  Score=36.15  Aligned_cols=92  Identities=12%  Similarity=0.165  Sum_probs=60.8

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH----------h---h-HHHHHHHhhccCCCEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE----------T---E-AFAIYDVMGYVKPPIFTL  175 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v----------~---a-GlAIYDtm~~ik~~V~Ti  175 (258)
                      ++.++...+.+.|-.++.++   +|. +.|.+.|... .|-.+..+          .   . ...+++.|...+.||...
T Consensus        27 l~~~~~~~l~~al~~~~~d~---~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  103 (257)
T PRK06495         27 LSRELRDELIAVFDEISERP---DVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAA  103 (257)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            67888888888887776432   333 3334545321 22111111          0   0 123566777888999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       176 ~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      +-|.|.+.|.-|+++++  -|++.++++|-+-.
T Consensus       104 v~G~a~GgG~~lalacD--~~ia~~~a~f~~pe  134 (257)
T PRK06495        104 VNGPALGAGLGLVASCD--IIVASENAVFGLPE  134 (257)
T ss_pred             ECCeeehhHHHHHHhCC--EEEecCCCEeeChh
Confidence            99999999999999995  68998888876633

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=87.26  E-value=5.2  Score=36.36  Aligned_cols=87  Identities=10%  Similarity=-0.006  Sum_probs=60.3

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh-------------hHHHHHHHhhccCCCEEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET-------------EAFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~-------------aGlAIYDtm~~ik~~V~Ti~  176 (258)
                      ++.++.+++...|-.++.++   ++. +.|.+.|... .|   +|+.             ....+++.|...+.||...+
T Consensus        28 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV  101 (258)
T PRK06190         28 LSAALRRALFAALAEADADD---DVDVVVLTGADPAFCAG---LDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAI  101 (258)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCCccCC---cCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEE
Confidence            68888888888887776432   333 3344444221 12   1221             12346777888999999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      -|.|.+.|.-|+++++  .|++.++++|-+
T Consensus       102 ~G~a~GgG~~lalacD--~~ia~~~a~f~~  129 (258)
T PRK06190        102 NGAAVTGGLELALACD--ILIASERARFAD  129 (258)
T ss_pred             CCEeecHHHHHHHhCC--EEEEeCCCEEEC
Confidence            9999999999999994  688888888764

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=87.19  E-value=3.3  Score=37.19  Aligned_cols=92  Identities=13%  Similarity=0.038  Sum_probs=62.2

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEE-ecCCCCC-CCCccccH-----------hhHHHHHHHhhccCCCEEEEEee
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTK-GGEKLGYE-----------TEAFAIYDVMGYVKPPIFTLCVG  178 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyI-NSpGg~~-~~~~~G~v-----------~aGlAIYDtm~~ik~~V~Ti~~G  178 (258)
                      ++.++.+.+...|-.++.+   +++...| .+.|+.. .|-.+..+           .....++..|...+.||...+-|
T Consensus        30 l~~~~~~~L~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  106 (251)
T PRK06023         30 ITRAMYATMAKALKAADAD---DAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDG  106 (251)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            6888888888888777643   3344333 3333221 11111100           11224567888899999999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       179 ~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      .|.+.|..|.+++  +.|++.++++|-+..
T Consensus       107 ~a~GgG~~la~ac--D~ria~~~a~f~~pe  134 (251)
T PRK06023        107 LAIGIGTTIHLHC--DLTFASPRSLFRTPF  134 (251)
T ss_pred             ceecHHHHHHHhC--CEEEEeCCCEecCcc
Confidence            9999999999999  469999999987644

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=87.18  E-value=3.4  Score=37.35  Aligned_cols=90  Identities=12%  Similarity=0.218  Sum_probs=58.6

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh---------------hHHHHHHHhhccCCCEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET---------------EAFAIYDVMGYVKPPIFT  174 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~---------------aGlAIYDtm~~ik~~V~T  174 (258)
                      ++.++...+.+.|..++.+   .++. +.|.+.|... .|-.+..+.               ....+++.|+.++.||..
T Consensus        29 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  105 (262)
T PRK07468         29 LSARMIAELTTAARRLAAD---AAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIG  105 (262)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            6677777777777666532   3343 4445544321 111111100               012357788899999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      .+-|.|.+.|.-|+++++  -|++.++++|-+
T Consensus       106 av~G~a~GgG~~lala~D--~ria~~~a~f~~  135 (262)
T PRK07468        106 RIQGQAFGGGVGLISVCD--VAIAVSGARFGL  135 (262)
T ss_pred             EECCEEEhHHHHHHHhCC--EEEEeCCCEEeC
Confidence            999999999999999994  688888887655

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=86.90  E-value=4.5  Score=36.31  Aligned_cols=92  Identities=14%  Similarity=0.146  Sum_probs=61.0

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh-------hH------------HHHHHHhhccCC
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET-------EA------------FAIYDVMGYVKP  170 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~-------aG------------lAIYDtm~~ik~  170 (258)
                      ++.++.+.+...|..++.++   ++. +.|.+.|+.. .|-.+..+.       ..            ..+++.|+..+.
T Consensus        27 l~~~~~~~l~~al~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  103 (262)
T PRK07509         27 LDFAMFEELIATIKRLKKDR---GIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPV  103 (262)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCC
Confidence            67888888888888776433   333 3344444331 221111000       00            123455678899


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       171 ~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      ||...+-|.|.+.|.-|+++++  .|++.++++|-+..
T Consensus       104 pvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe  139 (262)
T PRK07509        104 PVIAALEGVCFGGGLQIALGAD--IRIAAPDTKLSIME  139 (262)
T ss_pred             CEEEEECCeeecchHHHHHhCC--EEEecCCCEeecch
Confidence            9999999999999999999995  69999999887755

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=86.79  E-value=4.9  Score=36.24  Aligned_cols=94  Identities=13%  Similarity=0.035  Sum_probs=62.1

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCcccc-----------------Hhh-HHHHHHHhhccCCC
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY-----------------ETE-AFAIYDVMGYVKPP  171 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~-----------------v~a-GlAIYDtm~~ik~~  171 (258)
                      ++.++...+...|..++.++  .++. |.|.+.|... .|-.+..                 +.. ...+++.|...+.|
T Consensus        28 l~~~~~~~l~~~l~~~~~d~--~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  105 (266)
T PRK05981         28 VSIDMLGGLAEALDAIEDGK--AEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCP  105 (266)
T ss_pred             CCHHHHHHHHHHHHHHhcCC--CceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence            67888888888887776432  2244 3334444221 1111110                 001 12356778888999


Q ss_pred             EEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecC
Q 025057          172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQA  209 (258)
Q Consensus       172 V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP  209 (258)
                      |.+.+-|.|.+.|.-|+++++  .|++.++++|-+..+
T Consensus       106 vIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~~e~  141 (266)
T PRK05981        106 IVTAVNGPAAGVGMSFALMGD--LILCARSAYFLQAFR  141 (266)
T ss_pred             EEEEECCEeehHHHHHHHhCC--EEEecCCCEEechHh
Confidence            999999999999999999994  699999999875544

>PLN02600 enoyl-CoA hydratase

Probab=86.66  E-value=5.3  Score=35.91  Aligned_cols=90  Identities=12%  Similarity=0.077  Sum_probs=58.8

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEE-ecCCC-CC-CCCcccc-----------Hhh-HHHHHHHhhccCCCEEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGT-TK-GGEKLGY-----------ETE-AFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyI-NSpGg-~~-~~~~~G~-----------v~a-GlAIYDtm~~ik~~V~Ti~  176 (258)
                      ++.++.+++.+.|-.++.+   .++...| -+.|| .. .|-.+..           ... ...+++.|...+.||...+
T Consensus        19 l~~~~~~~l~~~~~~~~~d---~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav   95 (251)
T PLN02600         19 IGKEMLRGLRSAFEKIQAD---ASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVV   95 (251)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence            5778888888877766643   2344333 34332 11 1211110           011 1234566778889999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      -|.|.+.|.-|.++++  -|++.++++|.+
T Consensus        96 ~G~a~GgG~~lala~D--~~ia~~~a~f~~  123 (251)
T PLN02600         96 EGAALGGGLELALSCD--LRICGEEAVFGL  123 (251)
T ss_pred             cCeecchhHHHHHhCC--EEEeeCCCEEeC
Confidence            9999999999999994  689999988866

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=86.56  E-value=5.2  Score=36.14  Aligned_cols=90  Identities=16%  Similarity=0.178  Sum_probs=60.7

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCC-CC-CCCccccH------------hhHHHHHHHhhccCCCEEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg-~~-~~~~~G~v------------~aGlAIYDtm~~ik~~V~Ti~  176 (258)
                      ++.++...+.+.|-.++.++   ++. +.|-+.|+ .. .|-.+..+            .....+++.|...+.||...+
T Consensus        31 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  107 (256)
T PRK06143         31 LGTPVILALTQALRWLAADP---DVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARI  107 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            67888888888888776432   343 44445442 21 22111111            111235677888899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      -|.|.+.|.-|.++++  -|++.++++|-+
T Consensus       108 ~G~a~GgG~~lalacD--~~ia~~~a~f~~  135 (256)
T PRK06143        108 PGWCLGGGLELAAACD--LRIAAHDAQFGM  135 (256)
T ss_pred             CCEEeehhHHHHHhCC--EEEecCCCEEeC
Confidence            9999999999999994  588888887765

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=86.53  E-value=5.8  Score=35.96  Aligned_cols=89  Identities=15%  Similarity=0.200  Sum_probs=57.9

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCC-C-C-CCCccccH-----------hhHHHHHHHhhccCCCEEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-T-K-GGEKLGYE-----------TEAFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg-~-~-~~~~~G~v-----------~aGlAIYDtm~~ik~~V~Ti~  176 (258)
                      ++.++.+.+.+.|-.++.+ +   +. +.|.+.|| . . .|-.+..+           ..-..+++.|...+.||...+
T Consensus        28 l~~~~~~~l~~al~~~~~d-~---v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav  103 (261)
T PRK11423         28 LSKVLIDDLMQALSDLNRP-E---IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMV  103 (261)
T ss_pred             CCHHHHHHHHHHHHHHhcC-C---ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            5778888888877766532 2   33 44454332 1 1 22111111           111245677888899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      -|.|.+.|.-|+++++  -|++.++++|.+
T Consensus       104 ~G~a~GgG~~lalacD--~~ia~~~a~f~~  131 (261)
T PRK11423        104 EGSVWGGAFELIMSCD--LIIAASTSTFAM  131 (261)
T ss_pred             ecEEechHHHHHHhCC--EEEecCCCEecC
Confidence            9999999999999884  688888887754

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=86.45  E-value=4.1  Score=36.68  Aligned_cols=92  Identities=12%  Similarity=0.074  Sum_probs=61.0

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH---------h-hHHHHHHHhhccCCCEEEEEeee
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------T-EAFAIYDVMGYVKPPIFTLCVGN  179 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v---------~-aGlAIYDtm~~ik~~V~Ti~~G~  179 (258)
                      ++.++.+++.+.+-.++.+   +++. +.|.+.|... .|-.+..+         . ....+++.|...+.||...+-|.
T Consensus        26 l~~~~~~~L~~~~~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  102 (255)
T PRK09674         26 LNNALLTQLVNELEAAATD---TSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGY  102 (255)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence            6778888888877766643   3343 3334444221 22111111         0 11345677888999999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          180 AWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       180 AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      |.+.|.-|+++++  .|++.++++|.+-.
T Consensus       103 a~GgG~~lalacD--~~ia~~~a~f~~pe  129 (255)
T PRK09674        103 ALGAGCELALLCD--IVIAGENARFGLPE  129 (255)
T ss_pred             eehHHHHHHHhCC--EEEecCCCEEeCch
Confidence            9999999999994  68999888876643

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=86.16  E-value=8.7  Score=34.57  Aligned_cols=90  Identities=16%  Similarity=0.232  Sum_probs=59.8

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH---------------hhHHHHHHHhhccCCCEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT  174 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v---------------~aGlAIYDtm~~ik~~V~T  174 (258)
                      ++.++..++...|..++.+   .++. +.|.+.|... .|-.+..+               .....++..|...+.||..
T Consensus        28 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  104 (262)
T PRK05995         28 FNETVIAELTAAFRALDAD---DSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIA  104 (262)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEE
Confidence            6778888888888776643   2343 4445555321 12111100               0112355667788899999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      .+-|.|.+.|.-|+++++  -|++.++++|-+
T Consensus       105 av~G~a~GgG~~lalacD--~ria~~~a~f~~  134 (262)
T PRK05995        105 RVHGDAYAGGMGLVAACD--IAVAADHAVFCL  134 (262)
T ss_pred             EECCEEEhhHHHHHHhCC--EEEeeCCCEEeC
Confidence            999999999999999994  688888888765

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=86.16  E-value=6.1  Score=36.02  Aligned_cols=45  Identities=20%  Similarity=0.171  Sum_probs=37.8

Q ss_pred             HHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          160 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       160 AIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      .+++.|..++.||...+-|.|.+.|.-|+++++  -|++.++++|.+
T Consensus       100 ~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD--~ria~~~a~f~~  144 (276)
T PRK05864        100 DVILALRRLHQPVIAAVNGPAIGGGLCLALAAD--IRVASSSAYFRA  144 (276)
T ss_pred             HHHHHHHhCCCCEEEEECCEeehhHHHHHHhCC--EEEeeCCCEecC
Confidence            345677788999999999999999999999994  688888887753

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=86.15  E-value=4.3  Score=36.50  Aligned_cols=87  Identities=13%  Similarity=0.102  Sum_probs=59.3

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHhh------------HHHHHHHhhccCCCEEEEEe
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYETE------------AFAIYDVMGYVKPPIFTLCV  177 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~a------------GlAIYDtm~~ik~~V~Ti~~  177 (258)
                      ++.++.+++.+.|-.++.+   +++. +.|-+.|... .|   +++.+            ...++..|...+.||...+-
T Consensus        29 l~~~~~~~L~~~l~~~~~d---~~vr~vvl~g~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  102 (249)
T PRK07110         29 FSDELCDQLHEAFDTIAQD---PRYKVVILTGYPNYFATG---GTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQ  102 (249)
T ss_pred             CCHHHHHHHHHHHHHHHhC---CCceEEEEECCCCCeeCC---cChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEec
Confidence            6777788888777766643   2333 3334444321 11   12111            13567778889999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          178 GNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       178 G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      |.|.+.|..|.++++  -|++.++++|-+
T Consensus       103 G~a~GgG~~lal~cD--~~ia~~~a~f~~  129 (249)
T PRK07110        103 GHAIGGGLVLGLYAD--IVVLSRESVYTA  129 (249)
T ss_pred             CceechHHHHHHhCC--EEEEeCCCEecC
Confidence            999999999999994  688888887755

>PLN02888 enoyl-CoA hydratase

Probab=86.04  E-value=8  Score=35.18  Aligned_cols=87  Identities=16%  Similarity=0.086  Sum_probs=59.9

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHhh------------HHHHHHHhhccCCCEEEEEe
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYETE------------AFAIYDVMGYVKPPIFTLCV  177 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~a------------GlAIYDtm~~ik~~V~Ti~~  177 (258)
                      ++.++...+...|-.++.++   ++. +.|.+.|... .|   +|+.+            ...++..|..++.||.+.+-
T Consensus        34 l~~~~~~~l~~al~~~~~d~---~vr~vVltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~  107 (265)
T PLN02888         34 LTRPMMVELAAAFKRLDEDD---SVKVIILTGSGRAFCSG---VDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAIN  107 (265)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCcccCC---CCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEEC
Confidence            67888888888887776432   333 4445544221 22   12211            12355667788899999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          178 GNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       178 G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      |.|.+.|..|+++++  .|++.++++|-+
T Consensus       108 G~a~GgG~~lal~cD--~ria~~~a~f~~  134 (265)
T PLN02888        108 GFAITAGFEIALACD--ILVASRGAKFID  134 (265)
T ss_pred             CeeechHHHHHHhCC--EEEecCCCEecC
Confidence            999999999999994  688888888765

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=85.72  E-value=1.4  Score=43.97  Aligned_cols=104  Identities=13%  Similarity=0.125  Sum_probs=68.9

Q ss_pred             EeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHH
Q 025057          107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA  184 (258)
Q Consensus       107 fLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmA  184 (258)
                      +.+|.++.+.+.....-+-..+.  -+-||-..+|.||=..  .-|.-|-+..|-.+.+.+...+.|+.||.+|.+.+.|
T Consensus       305 ~~~G~~~~~~a~K~arfi~lcd~--~~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga  382 (493)
T PF01039_consen  305 QRAGALDPDGARKAARFIRLCDA--FNIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGA  382 (493)
T ss_dssp             CGGGEB-HHHHHHHHHHHHHHHH--TT--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHH
T ss_pred             cccccCChHHHHHHHHHHHHHHh--hCCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcc
Confidence            45577888887776653333333  2469999999999332  1111244666888999999999999999999999988


Q ss_pred             HHHHccCC--CCCeeecCCceEeEecCCch
Q 025057          185 ALLLGAGA--KGNRAALPSSTIMIKQAGDT  212 (258)
Q Consensus       185 slILaAG~--kgkR~alPnSriMIHQP~~~  212 (258)
                      .+.+++..  ....++.|++++-+-.|.+.
T Consensus       383 ~~am~~~~~~~~~~~Awp~a~~~vm~~e~a  412 (493)
T PF01039_consen  383 YYAMCGRGYGPDFVFAWPTAEIGVMGPEGA  412 (493)
T ss_dssp             HHHTTGGGGTTSEEEEETT-EEESS-HHHH
T ss_pred             hhhhcccccchhhhhhhhcceeeecChhhh
Confidence            77666542  23578899999999888763

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=85.59  E-value=4  Score=37.55  Aligned_cols=91  Identities=8%  Similarity=-0.061  Sum_probs=58.8

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEE-EEecCC--CCC-CCCccccHh---------hH-----HHHHHHhhccCCCE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYL-YINSTG--TTK-GGEKLGYET---------EA-----FAIYDVMGYVKPPI  172 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~L-yINSpG--g~~-~~~~~G~v~---------aG-----lAIYDtm~~ik~~V  172 (258)
                      .++.++...+.+.|-.++.++   ++.+ .|-+.|  +.. .|-.+..+.         .-     ..+++.|...+.||
T Consensus        34 al~~~~~~eL~~al~~~~~d~---~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv  110 (278)
T PLN03214         34 SMTLAMWRSLDDALTALENDP---TVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLAT  110 (278)
T ss_pred             CCCHHHHHHHHHHHHHHHcCC---CceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCE
Confidence            367788888888887776433   3333 333433  121 221111100         00     12456677888999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       173 ~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      ...+-|.|.+.|..|+++++  .|++.++++|-+
T Consensus       111 IAaV~G~a~GgG~~lalacD--~ria~~~a~f~~  142 (278)
T PLN03214        111 VCAIRGACPAGGCAVSLCCD--YRLQTTEGTMGL  142 (278)
T ss_pred             EEEEcCcccchHHHHHHhCC--EEEecCCCEecC
Confidence            99999999999999999994  689888887765

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=85.50  E-value=7.2  Score=35.22  Aligned_cols=90  Identities=13%  Similarity=0.092  Sum_probs=57.5

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEE-EecCCCCC-CCCccccH----------hhHHHHHHHhhccCCCEEEEEeee
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTGTTK-GGEKLGYE----------TEAFAIYDVMGYVKPPIFTLCVGN  179 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~Ly-INSpGg~~-~~~~~G~v----------~aGlAIYDtm~~ik~~V~Ti~~G~  179 (258)
                      ++.++...+.+.|-.++.+   +++.+. |-+.|... .|-.+..+          .....+++.|...+.||...+-|.
T Consensus        32 l~~~~~~~l~~al~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~  108 (261)
T PRK08138         32 LNMEVRQQLAEHFTELSED---PDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGY  108 (261)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence            6778888888877766643   344433 33433221 22111110          011235667778899999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          180 AWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       180 AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      |.+.|.-|+++++  .|++.++++|-+
T Consensus       109 a~GgG~~lalacD--~ria~~~a~f~~  133 (261)
T PRK08138        109 ALGGGCELAMHAD--IIVAGESASFGQ  133 (261)
T ss_pred             EEcHHHHHHHhCC--EEEecCCCEeeC
Confidence            9999999999984  577777776654

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=85.39  E-value=5.4  Score=36.36  Aligned_cols=45  Identities=11%  Similarity=0.144  Sum_probs=39.3

Q ss_pred             HHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          160 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       160 AIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      .+++.|..++.||...+-|.|.+.|..|.++++  -|++.++++|.+
T Consensus       102 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~  146 (275)
T PLN02664        102 DAITAIEQCRKPVIAAIHGACIGGGVDIVTACD--IRYCSEDAFFSV  146 (275)
T ss_pred             HHHHHHHhCCCCEEEEECCccccchHHHHHhCC--EEEecCCCEecc
Confidence            356678888999999999999999999999995  689999988866

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=85.35  E-value=6.2  Score=35.58  Aligned_cols=90  Identities=16%  Similarity=0.146  Sum_probs=59.7

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCC-CC-CCCccccHh-----------h-HHHHHHHhhccCCCEEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYET-----------E-AFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg-~~-~~~~~G~v~-----------a-GlAIYDtm~~ik~~V~Ti~  176 (258)
                      ++.++...+...|-.++.++   ++. +.|.+.|+ .. .|-.+..+.           . ...+++.|..++.||...+
T Consensus        26 l~~~~~~~l~~al~~~~~d~---~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  102 (258)
T PRK09076         26 WTADSLQALKQLVLELNADK---DVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAI  102 (258)
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            67788888888777776432   344 34455452 11 221111110           0 1235667788899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      -|.|.+.|.-|+++++  -|++.++++|-+
T Consensus       103 ~G~a~GgG~~lalacD--~~ia~~~a~f~~  130 (258)
T PRK09076        103 NGYAMGGGLECALACD--IRIAEEQAQMAL  130 (258)
T ss_pred             CCEEecHHHHHHHhCC--EEEecCCCEeeC
Confidence            9999999999999994  688888888765

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=85.34  E-value=7.2  Score=35.04  Aligned_cols=90  Identities=17%  Similarity=0.157  Sum_probs=59.2

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH----------hhH-----HHHHHHhhccCCCEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE----------TEA-----FAIYDVMGYVKPPIFTL  175 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v----------~aG-----lAIYDtm~~ik~~V~Ti  175 (258)
                      ++.++..++...|-.++.++ .+  -+.|.+.|... .|-.+..+          ...     -.+++.|..++.||...
T Consensus        23 l~~~~~~~l~~~l~~~~~d~-v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa   99 (256)
T TIGR02280        23 FTAEMHLELREALERVERDD-AR--ALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCA   99 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcCC-cE--EEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            67788888888888776533 22  23334444221 11111100          011     12456778889999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       176 ~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      +-|.|.+.|..|+++++  .|++.++++|-+
T Consensus       100 v~G~a~GgG~~lala~D--~ria~~~a~f~~  128 (256)
T TIGR02280       100 VNGVAAGAGANLALACD--IVLAAESARFIQ  128 (256)
T ss_pred             ECCeeehHHHHHHHhCC--EEEecCCCEEeC
Confidence            99999999999999994  699999988764

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=85.11  E-value=4.8  Score=36.33  Aligned_cols=90  Identities=13%  Similarity=0.138  Sum_probs=59.0

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEE-EecCCC-CC-CCCccccH----------hh-HHHHHHHhhccCCCEEEEEe
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTGT-TK-GGEKLGYE----------TE-AFAIYDVMGYVKPPIFTLCV  177 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~Ly-INSpGg-~~-~~~~~G~v----------~a-GlAIYDtm~~ik~~V~Ti~~  177 (258)
                      ++.++.+.+...|-.++.+   .+|.+. |.+.|+ .. .|-.+..+          .. ...+++.|..++.||...+-
T Consensus        26 l~~~~~~~l~~al~~~~~d---~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  102 (256)
T TIGR03210        26 FRGQTCDELIHALKDAGYD---RQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQ  102 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            5777788888777766643   345433 344442 11 12111111          00 12356778888999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          178 GNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       178 G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      |.|.+.|.-|+++++  -|++.++++|-+
T Consensus       103 G~a~GgG~~lal~cD--~~ia~~~a~f~~  129 (256)
T TIGR03210       103 GYAIGGGNVLVTICD--LTIASEKAQFGQ  129 (256)
T ss_pred             CEEehhhHHHHHhCC--EEEEeCCCEEec
Confidence            999999999999994  588888888765

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=84.99  E-value=6.3  Score=38.87  Aligned_cols=96  Identities=14%  Similarity=0.121  Sum_probs=61.5

Q ss_pred             CcEEEeCce-----eChhhHHHHHHHHHhccccCCCCcEEE-EEecCCCCC-CCCccccHhh------------HH----
Q 025057          103 NRIVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYL-YINSTGTTK-GGEKLGYETE------------AF----  159 (258)
Q Consensus       103 eRIIfLgg~-----Idd~~a~~iiaqLL~L~~ed~~k~I~L-yINSpGg~~-~~~~~G~v~a------------Gl----  159 (258)
                      -++|.|.-|     ++.++...+...|..++.++   +|.+ .|.+.|... -|   ||+.+            +.    
T Consensus        52 ~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~---~vrvVVL~G~GkaFcAG---gDl~~l~~~~~~~~~~~~~~~f~  125 (407)
T PLN02851         52 SRAAILNRPSSLNALTIPMVARLKRLYESWEENP---DIGFVLMKGSGRAFCSG---ADVVSLYHLINEGNVEECKLFFE  125 (407)
T ss_pred             EEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCCccCC---cCHHHHHhhccccchHHHHHHHH
Confidence            356677766     78899999999998887543   3443 344444221 11   22211            11    


Q ss_pred             HHH---HHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          160 AIY---DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       160 AIY---Dtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      ..|   ..|...+.||...+.|.|.+.|.-|.++++  .|++.++++|-+
T Consensus       126 ~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D--~rVate~a~fam  173 (407)
T PLN02851        126 NLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGM--FRVVTDKTVFAH  173 (407)
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCC--EEEEeCCceEec
Confidence            122   345567889999999999999999999884  466666655544

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=84.50  E-value=6.9  Score=36.12  Aligned_cols=46  Identities=17%  Similarity=0.000  Sum_probs=40.1

Q ss_pred             HHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       161 IYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      +++.|...+.||...+-|.|.+.|.-|+++++  -|++.++++|-+..
T Consensus       105 ~~~~l~~~pkPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe  150 (296)
T PRK08260        105 VTLRIFDSLKPVIAAVNGPAVGVGATMTLAMD--IRLASTAARFGFVF  150 (296)
T ss_pred             HHHHHHhCCCCEEEEECCeeehHhHHHHHhCC--EEEeeCCCEEecch
Confidence            56678888999999999999999999999995  69999999887654

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=83.61  E-value=7  Score=35.29  Aligned_cols=88  Identities=18%  Similarity=0.237  Sum_probs=57.5

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH------------hhHHHHHHHhhccCCCEEEEEe
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLCV  177 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v------------~aGlAIYDtm~~ik~~V~Ti~~  177 (258)
                      ++.++..++...|-.++  +   ++. +.|-+.|... .|-.+..+            .....+++.|...+.||...+-
T Consensus        26 l~~~~~~~l~~al~~~~--~---~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  100 (255)
T PRK08150         26 LNDGLIAALRAAFARLP--E---GVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALH  100 (255)
T ss_pred             CCHHHHHHHHHHHHHhh--c---CCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            57777788877777665  2   233 3334444211 11111110            1123456778888999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          178 GNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       178 G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      |.|.+.|.-|+++++  .|++.++++|.+
T Consensus       101 G~a~GgG~~lalacD--~~ia~~~a~f~~  127 (255)
T PRK08150        101 GAVVGGGLELASAAH--IRVADESTYFAL  127 (255)
T ss_pred             CEEEcHHHHHHHhCC--EEEEeCCCEEec
Confidence            999999999999994  688888887765

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=83.24  E-value=7.8  Score=34.75  Aligned_cols=92  Identities=14%  Similarity=0.122  Sum_probs=60.1

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEE-EecCCCCC-CCCcccc------------HhhHHHHHHHhhccCCCEEEEEe
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTGTTK-GGEKLGY------------ETEAFAIYDVMGYVKPPIFTLCV  177 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~Ly-INSpGg~~-~~~~~G~------------v~aGlAIYDtm~~ik~~V~Ti~~  177 (258)
                      ++.++..++...|-.++.+   +++... |.+.|... .|-.+..            .......+..|...+.||...+-
T Consensus        27 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  103 (249)
T PRK05870         27 VTAEMSAQLRAAVAAAEAD---PDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVN  103 (249)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            6788888888888777643   344433 34444221 1110000            01112344567778899999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       178 G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      |.|.+.|.-|.++++  -|++.++++|-+..
T Consensus       104 G~a~GgG~~lal~cD--~ria~~~a~f~~pe  132 (249)
T PRK05870        104 GAAVGAGLNLALAAD--VRIAGPKALFDARF  132 (249)
T ss_pred             CEeEchhHHHHHhCC--EEEEcCCCEEeCcc
Confidence            999999999999994  68998988886543

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=83.24  E-value=7.8  Score=35.13  Aligned_cols=91  Identities=15%  Similarity=0.179  Sum_probs=60.3

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEE-EEecCCCCC-CCCccccH-----------------------hhHHHHHHHhh
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYL-YINSTGTTK-GGEKLGYE-----------------------TEAFAIYDVMG  166 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~L-yINSpGg~~-~~~~~G~v-----------------------~aGlAIYDtm~  166 (258)
                      ++.++...+.+.|-.++.   +++|.+ .|.+.|... .|-.+..+                       .....+++.|.
T Consensus        30 l~~~~~~~l~~~l~~~~~---d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  106 (272)
T PRK06142         30 MNPAFWSELPEIFRWLDA---DPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVA  106 (272)
T ss_pred             CCHHHHHHHHHHHHHHhh---CCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            788888888887776664   234543 334444221 12111100                       01134566778


Q ss_pred             ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       167 ~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      .++.||...+-|.|.+.|.-|+++++  -|++.++++|-+.
T Consensus       107 ~~~kpvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~p  145 (272)
T PRK06142        107 DCRKPVIAAVQGWCIGGGVDLISACD--MRYASADAKFSVR  145 (272)
T ss_pred             hCCCCEEEEecCccccchHHHHHhCC--EEEecCCCeecch
Confidence            88999999999999999999999995  5899998877553

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=83.09  E-value=7.9  Score=34.78  Aligned_cols=90  Identities=12%  Similarity=0.131  Sum_probs=58.7

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEE-EEecCCC-CC-CCCccccH----------------hhHHHHHHHhhccCCCE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYL-YINSTGT-TK-GGEKLGYE----------------TEAFAIYDVMGYVKPPI  172 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~L-yINSpGg-~~-~~~~~G~v----------------~aGlAIYDtm~~ik~~V  172 (258)
                      ++.++.+++...|-.++.+   .++.+ .|-+.|+ .. .|-.+..+                .....+++.|...+.||
T Consensus        27 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv  103 (260)
T PRK05980         27 LNYALIDRLLARLDAIEVD---ESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPV  103 (260)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCE
Confidence            6778888888877766643   23433 3344442 21 22111100                00123566777889999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       173 ~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      ...+-|.|.+.|.-|+++++  -|++.++++|.+
T Consensus       104 Iaav~G~a~GgG~~lal~cD--~ria~~~a~f~~  135 (260)
T PRK05980        104 IAAVNGLAFGGGCEITEAVH--LAIASERALFAK  135 (260)
T ss_pred             EEEEcCEEEhhhhHHhHhCC--EEEecCCCEecC
Confidence            99999999999999999984  688888887765

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=82.96  E-value=9.3  Score=34.35  Aligned_cols=92  Identities=12%  Similarity=0.139  Sum_probs=60.3

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCC-CCC-CCCccccH------------hhHHHHHHHhhccCCCEEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTG-TTK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpG-g~~-~~~~~G~v------------~aGlAIYDtm~~ik~~V~Ti~  176 (258)
                      ++.++..++.+.+-.++.+   .++. +.|.+.| ... .|-.+..+            .....+++.|...+.||...+
T Consensus        28 l~~~~~~~l~~~~~~~~~d---~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav  104 (260)
T PRK05809         28 LNSETLKELDTVLDDIEND---DNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAI  104 (260)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            5777778888777666543   2344 3345545 221 22111111            011346677888899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      -|.|.+.|.-|+++++  -|++.++++|.+-.
T Consensus       105 ~G~a~GgG~~lal~cD--~~va~~~a~f~~pe  134 (260)
T PRK05809        105 NGFALGGGCELSMACD--IRIASEKAKFGQPE  134 (260)
T ss_pred             cCeeecHHHHHHHhCC--EEEeeCCCEEeCcc
Confidence            9999999999999994  68888888877633

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=82.74  E-value=10  Score=34.45  Aligned_cols=90  Identities=14%  Similarity=0.092  Sum_probs=58.2

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh--------------hHHHHHHHhhccCCCEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET--------------EAFAIYDVMGYVKPPIFTL  175 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~--------------aGlAIYDtm~~ik~~V~Ti  175 (258)
                      ++.++...+.+.|-.++.++   +|. +.|.+.|... .|-.+..+.              ....++..|..++.||...
T Consensus        36 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  112 (268)
T PRK07327         36 ADARMHRELADIWRDVDRDP---DVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSA  112 (268)
T ss_pred             CCHHHHHHHHHHHHHhhhCC---CceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            67788888888887776533   344 3334444221 121111110              0123445566778899999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       176 ~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      +-|.|.+.|.-|+++++  -|++.++++|-+
T Consensus       113 v~G~a~GgG~~lalacD--~ria~~~a~f~~  141 (268)
T PRK07327        113 IHGPAVGAGLVAALLAD--ISIAAKDARIID  141 (268)
T ss_pred             EcCeeeehhhHHHHhCC--EEEecCCCEEeC
Confidence            99999999999999984  688888887754

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=82.64  E-value=7.6  Score=34.93  Aligned_cols=90  Identities=17%  Similarity=0.160  Sum_probs=58.7

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH---------------hhH-HHHHHHhhccCCCEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE---------------TEA-FAIYDVMGYVKPPIFT  174 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v---------------~aG-lAIYDtm~~ik~~V~T  174 (258)
                      ++.++...+.+.+-.++ ++..+  -+.|-+.|... .|-.+..+               ... -.+++.|...+.||..
T Consensus        28 l~~~~~~~l~~~~~~~~-d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  104 (262)
T PRK08140         28 FTREMHRELREALDQVE-DDGAR--ALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIA  104 (262)
T ss_pred             CCHHHHHHHHHHHHHhc-CCCce--EEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            67788888888888777 33222  23333433221 11111110               000 1256677888999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      .+-|.|.+.|.-|++++  +-|++.++++|.+
T Consensus       105 av~G~a~GgG~~lalac--D~ria~~~a~f~~  134 (262)
T PRK08140        105 AVNGVAAGAGANLALAC--DIVLAARSASFIQ  134 (262)
T ss_pred             EECCeeehhHHHHHHhC--CEEEecCCCEEec
Confidence            99999999999999999  4699999988764

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=82.61  E-value=7.9  Score=35.06  Aligned_cols=90  Identities=14%  Similarity=0.142  Sum_probs=58.8

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEE-EEecCCC-CC-CCCccccH-------------hhHHHHHHHhhccCCCEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYL-YINSTGT-TK-GGEKLGYE-------------TEAFAIYDVMGYVKPPIFTL  175 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~L-yINSpGg-~~-~~~~~G~v-------------~aGlAIYDtm~~ik~~V~Ti  175 (258)
                      ++.++.+++...|-.++.+   +++.+ .|.+.|+ .. .|-.+..+             .....+++.|...+.||...
T Consensus        32 l~~~~~~~l~~~l~~~~~d---~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa  108 (262)
T PRK06144         32 MTWAMYEGLAEICEAIAAD---PSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAA  108 (262)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            5777788888877766642   33443 3344442 11 22111110             00123556677888999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       176 ~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      +-|.|.+.|.-|+++++  .|++.++++|-+
T Consensus       109 v~G~a~GgG~~lala~D--~~ia~~~a~f~~  137 (262)
T PRK06144        109 IAGACVGGGAAIAAACD--LRIATPSARFGF  137 (262)
T ss_pred             ECCeeeehHHHHHHhCC--EEEecCCCEeec
Confidence            99999999999999994  699999998865

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=82.46  E-value=12  Score=33.68  Aligned_cols=90  Identities=13%  Similarity=0.100  Sum_probs=59.0

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH------hh-------HHHHHHHhhccCCCEEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE------TE-------AFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v------~a-------GlAIYDtm~~ik~~V~Ti~  176 (258)
                      ++.++...+...|..++.++   ++. +.|.+.|... .|-.+..+      ..       ....++.|...+.||...+
T Consensus        25 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav  101 (249)
T PRK07938         25 LPSAGWFALADAITAAGADP---DTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAV  101 (249)
T ss_pred             CCHHHHHHHHHHHHHhhcCC---CeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            67778888888777666432   333 3344444221 12111111      00       1235567778899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      -|.|.+.|.-|+++++  -|++.++++|-+
T Consensus       102 ~G~a~GgG~~Lal~cD--~ria~~~a~f~~  129 (249)
T PRK07938        102 HGFCLGGGIGLVGNAD--VIVASDDATFGL  129 (249)
T ss_pred             cCEEeehHHHHHHhCC--EEEEeCCCEeeC
Confidence            9999999999999995  689998887765

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=82.06  E-value=9.3  Score=37.19  Aligned_cols=87  Identities=16%  Similarity=0.205  Sum_probs=57.5

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHhh-------------------HHHHHHHhhccCC
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYETE-------------------AFAIYDVMGYVKP  170 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~a-------------------GlAIYDtm~~ik~  170 (258)
                      ++.++...+.+.|..++.++   +|. +.|-+.|... .|   ||+.+                   .......|..++.
T Consensus        33 Ls~~m~~~L~~al~~~~~d~---~v~~VVl~G~G~~FcAG---gDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pK  106 (381)
T PLN02988         33 LSFHMISRLLQLFLAFEEDP---SVKLVILKGHGRAFCAG---GDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSK  106 (381)
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CeeEEEEECCCCCcccC---cCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCC
Confidence            67888899999888776432   343 3445555221 12   22221                   1112235667889


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       171 ~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      ||...+-|.|.+.|.-|.+++  +.|++.++++|-+
T Consensus       107 PvIa~v~G~a~GGG~~Lal~~--D~rvate~a~f~m  140 (381)
T PLN02988        107 AQVSILNGIVMGGGAGVSVHG--RFRIATENTVFAM  140 (381)
T ss_pred             CEEEEecCeEeehhhHHhhcC--CeEEEcCCcEEeC
Confidence            999999999999999999988  4577777776553

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=82.05  E-value=5.8  Score=37.84  Aligned_cols=93  Identities=16%  Similarity=0.177  Sum_probs=64.8

Q ss_pred             EeCceeChhhHHHHHHHHHhccccCC----CCcEEEEEecCCCCCCCCccccHhhHH-------HHHHHhhccC--CCEE
Q 025057          107 YLGMSFVPSVTELILAEFLYLQYEDV----EKPIYLYINSTGTTKGGEKLGYETEAF-------AIYDVMGYVK--PPIF  173 (258)
Q Consensus       107 fLgg~Idd~~a~~iiaqLL~L~~ed~----~k~I~LyINSpGg~~~~~~~G~v~aGl-------AIYDtm~~ik--~~V~  173 (258)
                      |++|.+.+...+.+.. ++.+..++.    -.|+-+.+.|.|+        .+.+|.       -|+..+...+  -|+.
T Consensus        79 f~GGS~G~~~g~Ki~r-~~e~A~~~~~~~~~~PvV~l~dSGGa--------RlqEg~~~L~~~a~i~~~~~~ls~~VP~I  149 (301)
T PRK07189         79 FMGGSVGEVHGAKLAG-ALELAAEDNRNGIPTAVLLLFETGGV--------RLQEANAGLAAIAEIMRAIVDLRAAVPVI  149 (301)
T ss_pred             ccCcCcCHHHHHHHHH-HHHHHHHhCCCCCCCCEEEEecCCCc--------CccchHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            6788998888888775 555554443    2689899999883        333222       2343333333  6999


Q ss_pred             EEEeee--ehhHHHHHHccCCCCCeeecCCceEeEecCC
Q 025057          174 TLCVGN--AWGEAALLLGAGAKGNRAALPSSTIMIKQAG  210 (258)
Q Consensus       174 Ti~~G~--AASmAslILaAG~kgkR~alPnSriMIHQP~  210 (258)
                      +++.|-  |++.++++.+.++  ..+|.+++++.+--|.
T Consensus       150 ~vv~G~~gc~GG~a~~a~l~D--~iIm~~~a~iglaGP~  186 (301)
T PRK07189        150 GLIGGRVGCFGGMGIAAALCS--YLIVSEEGRLGLSGPE  186 (301)
T ss_pred             EEEcCCCCCcHHHHHHHhcCC--EEEEECCcEEeccCHH
Confidence            999998  7888887777774  5789999999886664

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=82.00  E-value=11  Score=34.93  Aligned_cols=44  Identities=9%  Similarity=-0.067  Sum_probs=37.1

Q ss_pred             HHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       161 IYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      ++..|...+.||...+-|.|.+.|.-|+++++  -|++.++++|-+
T Consensus       119 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD--~~ias~~a~f~~  162 (302)
T PRK08272        119 GFMSLWHAHKPTVAKVHGYCVAGGTDIALHCD--QVIAADDAKIGY  162 (302)
T ss_pred             HHHHHHhCCCCEEEEEccEeehhhHHHHHhCC--EEEEeCCCEecC
Confidence            45667788899999999999999999999994  688888887643

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=81.96  E-value=6.9  Score=36.18  Aligned_cols=44  Identities=9%  Similarity=-0.043  Sum_probs=37.7

Q ss_pred             HHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       161 IYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      ++..|...+.||.+.+-|.|.+.|.-|+++++  -|++.++++|-+
T Consensus       110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD--~ria~e~a~f~~  153 (288)
T PRK08290        110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVCD--LIVASDDAFFSD  153 (288)
T ss_pred             HHHHHHhCCCCEEEEECCEeeHHHHHHHHhCC--EEEeeCCCEecC
Confidence            44567788999999999999999999999994  689999888764

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=81.89  E-value=17  Score=32.77  Aligned_cols=91  Identities=10%  Similarity=0.025  Sum_probs=59.5

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh------------h-HHHHHHHhhccCCCEEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET------------E-AFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~------------a-GlAIYDtm~~ik~~V~Ti~  176 (258)
                      ++.++...+...|..++  |  .++. +.|.+.|... .|-.+..+.            . ...++..|...+.||...+
T Consensus        30 l~~~~~~~l~~~l~~~~--d--~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav  105 (260)
T PRK07659         30 LDEPMLKELLQALKEVA--E--SSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAI  105 (260)
T ss_pred             CCHHHHHHHHHHHHHhc--C--CCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence            67788888888887773  3  2344 4445544321 221111110            0 1124455667788999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      -|.|.+.|.-|+++++  .|++.++++|-+..
T Consensus       106 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe  135 (260)
T PRK07659        106 HGPAAGLGLSIALTAD--YVIADISAKLAMNF  135 (260)
T ss_pred             cCceecHHHHHHHhCC--EEEEcCCCEEcCch
Confidence            9999999999999994  69999998876544

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=81.86  E-value=16  Score=32.72  Aligned_cols=91  Identities=11%  Similarity=0.030  Sum_probs=58.2

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccHh------------hHHH-HHHHhhccCCCEEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET------------EAFA-IYDVMGYVKPPIFTLC  176 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v~------------aGlA-IYDtm~~ik~~V~Ti~  176 (258)
                      ++.++.+++...|-.++.+   .++. +.|-+.|... .|-.+..+.            .... .+..|...+.||...+
T Consensus        23 l~~~~~~~l~~~l~~~~~d---~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav   99 (255)
T PRK06563         23 FDSAMLDDLALALGEYEAD---DELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAV   99 (255)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEE
Confidence            6777888888877766543   3344 4444444321 221111110            0111 1234677889999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      -|.|.+.|..|+++++  .|++.++++|-+.
T Consensus       100 ~G~a~GgG~~lal~cD--~ria~~~a~f~~p  128 (255)
T PRK06563        100 QGYCLTLGIELMLAAD--IVVAADNTRFAQL  128 (255)
T ss_pred             cCeeecHHHHHHHhCC--EEEecCCCEEeCh
Confidence            9999999999999994  6999998887664

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=81.45  E-value=12  Score=33.66  Aligned_cols=90  Identities=18%  Similarity=0.187  Sum_probs=58.3

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccccH---------------hhHHHHHHHhhccCCCEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT  174 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~v---------------~aGlAIYDtm~~ik~~V~T  174 (258)
                      ++.++...+...|..++.+   .++. +.|.+.|... .|-.+..+               .....+++.|..++.||..
T Consensus        30 l~~~~~~el~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  106 (260)
T PRK07827         30 LSARLVAQLHDGLRAAAAD---PAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIA  106 (260)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            5777788888777766542   3344 3345555331 11111100               0112345666778899999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      .+-|.|.+.|.-|+++++  -|++.++++|-+
T Consensus       107 av~G~a~GgG~~lalacD--~ria~~~a~f~~  136 (260)
T PRK07827        107 AIDGHVRAGGFGLVGACD--IVVAGPESTFAL  136 (260)
T ss_pred             EEcCeeecchhhHHHhCC--EEEEcCCCEEeC
Confidence            999999999999999995  688888887655

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=81.31  E-value=11  Score=33.92  Aligned_cols=90  Identities=10%  Similarity=0.108  Sum_probs=58.5

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEE-ecCCCCC-CCCcccc--------H--hhHHHHHHHhhccCCCEEEEEeee
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTK-GGEKLGY--------E--TEAFAIYDVMGYVKPPIFTLCVGN  179 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyI-NSpGg~~-~~~~~G~--------v--~aGlAIYDtm~~ik~~V~Ti~~G~  179 (258)
                      ++.++...+.+.|-.++.+   +++.+.| -+.|... .|-.+..        .  ......++.|...+.||...+-|.
T Consensus        28 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~  104 (257)
T PRK05862         28 LNDALMDELGAALAAFDAD---EGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGY  104 (257)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence            5777788888777766643   3344333 3434221 1211111        0  112245677888899999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          180 AWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       180 AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      |.+.|.-|.++++  .|++.++++|-+
T Consensus       105 a~GgG~~lalacD--~~ia~~~a~f~~  129 (257)
T PRK05862        105 ALGGGCELAMMCD--IIIAADTAKFGQ  129 (257)
T ss_pred             EeHHHHHHHHHCC--EEEEeCCCEEeC
Confidence            9999999999994  688888877765

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=80.82  E-value=12  Score=33.90  Aligned_cols=92  Identities=13%  Similarity=0.138  Sum_probs=59.7

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCC-CC-CCCccccH-------------hhHHHHHHHhhccCCCEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE-------------TEAFAIYDVMGYVKPPIFTL  175 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg-~~-~~~~~G~v-------------~aGlAIYDtm~~ik~~V~Ti  175 (258)
                      ++.++.+++.+.|-.++.+   +++. +.|-+.|+ .. .|-.+...             .....+++.|..++.||...
T Consensus        27 l~~~~~~el~~~l~~~~~d---~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  103 (259)
T TIGR01929        27 FRPLTVKEIIQALDDARED---PDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAM  103 (259)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence            5777888888777766542   3343 33444442 11 11111100             01123566788888999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       176 ~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      +-|.|.+.|.-|+++++  -|++.++++|.+-.
T Consensus       104 v~G~a~GgG~~lalacD--~~ia~~~a~f~~pe  134 (259)
T TIGR01929       104 VNGYAIGGGHVLHVVCD--LTIAAENARFGQTG  134 (259)
T ss_pred             EcCEEehHHHHHHHhCC--EEEecCCCEecCcc
Confidence            99999999999999995  58888888887743

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=80.74  E-value=8.8  Score=36.11  Aligned_cols=93  Identities=17%  Similarity=0.187  Sum_probs=63.4

Q ss_pred             EeCceeChhhHHHHHHHHHhccccC----CCCcEEEEEecCCCCCCCCccccHhhHH-------HHHHHhhccC--CCEE
Q 025057          107 YLGMSFVPSVTELILAEFLYLQYED----VEKPIYLYINSTGTTKGGEKLGYETEAF-------AIYDVMGYVK--PPIF  173 (258)
Q Consensus       107 fLgg~Idd~~a~~iiaqLL~L~~ed----~~k~I~LyINSpGg~~~~~~~G~v~aGl-------AIYDtm~~ik--~~V~  173 (258)
                      |.+|-+.+...+.++. ++.+..+|    ..-|+-+.+.|.|        +.+.+|.       -|+..+...+  .|+.
T Consensus        70 ~~GGS~G~~~g~Ki~r-~~e~A~~~~~~~~~~PvV~l~dSgG--------aRlqEg~~~L~~~a~i~~~~~~ls~~vP~I  140 (274)
T TIGR03133        70 FQGGSVGEVHGAKIVG-ALRLAIEDNRKGQPTAVVLLLDTGG--------VRLQEANAGLIAIAEIMRAILDARAAVPVI  140 (274)
T ss_pred             ccCcCCCHHHHHHHHH-HHHHHHhhhhccCCCCEEEEEcCCC--------cChhhhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            6788888877777765 55455441    1248888888888        3444433       1232322222  6999


Q ss_pred             EEEeee--ehhHHHHHHccCCCCCeeecCCceEeEecCC
Q 025057          174 TLCVGN--AWGEAALLLGAGAKGNRAALPSSTIMIKQAG  210 (258)
Q Consensus       174 Ti~~G~--AASmAslILaAG~kgkR~alPnSriMIHQP~  210 (258)
                      +++.|-  |++.++++.+.++  ..+|.|++++.+--|.
T Consensus       141 svv~Gp~gc~GG~a~~a~l~D--~vim~~~a~i~~aGP~  177 (274)
T TIGR03133       141 GVIGGRVGCFGGMGIAAGLCS--YLIMTEEGRLGLSGPE  177 (274)
T ss_pred             EEEeCCCCcchHHHHHHhcCC--EEEEeCCcEEeccCHH
Confidence            999999  7788887777774  5789999999887764

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=80.42  E-value=10  Score=35.98  Aligned_cols=90  Identities=12%  Similarity=0.176  Sum_probs=59.0

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEE-ecCCC-CC-CCCccccHh----------------hHHHHHHHhhccCCCE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGT-TK-GGEKLGYET----------------EAFAIYDVMGYVKPPI  172 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyI-NSpGg-~~-~~~~~G~v~----------------aGlAIYDtm~~ik~~V  172 (258)
                      ++.++...+.+.+-.++.   +.+|.+.| .+.|+ .. .|-.+..+.                ....++..|..++.||
T Consensus        27 l~~~m~~~L~~~l~~~~~---d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv  103 (342)
T PRK05617         27 LSLEMIRAIDAALDAWED---DDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPY  103 (342)
T ss_pred             CCHHHHHHHHHHHHHHhh---CCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCE
Confidence            677888888887776654   33455444 44441 11 121111110                0123456677888999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       173 ~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      ...+-|.|.+.|.-|.++++  -|++.++++|-+
T Consensus       104 IAaVnG~a~GgG~~LalacD--~ria~~~a~f~~  135 (342)
T PRK05617        104 IALMDGIVMGGGVGISAHGS--HRIVTERTKMAM  135 (342)
T ss_pred             EEEEcCEEEccHhHHhhhCC--EEEEcCCCEeeC
Confidence            99999999999999999994  689988888765

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=80.34  E-value=11  Score=34.10  Aligned_cols=45  Identities=18%  Similarity=0.103  Sum_probs=38.6

Q ss_pred             HHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       161 IYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      +++.|..++.||...+-|.|.+.|.-|++++  +-|++.++++|.+-
T Consensus        95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~p  139 (266)
T PRK09245         95 IPLALYNLEVPVIAAVNGPAIGAGCDLACMC--DIRIASETARFAES  139 (266)
T ss_pred             HHHHHHcCCCCEEEEECCEeecHHHHHHHhC--CEEEecCCCEEccc
Confidence            4567778889999999999999999999999  46899998887653

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=80.19  E-value=13  Score=33.68  Aligned_cols=90  Identities=14%  Similarity=0.223  Sum_probs=57.3

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEE-EecCCCCC-CCCccccH---------------hhHHHHHHHhhccCCCEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT  174 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~Ly-INSpGg~~-~~~~~G~v---------------~aGlAIYDtm~~ik~~V~T  174 (258)
                      ++.++...+.+.|..++.+   +++.+. |-+.|... .|-.+..+               .....++..|...+.||..
T Consensus        30 l~~~~~~el~~al~~~~~d---~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  106 (265)
T PRK05674         30 FNAQMIRELILALDQVQSD---ASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLA  106 (265)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEE
Confidence            5777777777777766643   344433 34434221 11111100               0012345566778899999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      .+-|.|.+.|.-|+++++  -|++.++++|-+
T Consensus       107 aV~G~a~GgG~~lal~~D--~~ia~~~a~f~~  136 (265)
T PRK05674        107 VVQGAAFGGALGLISCCD--MAIGADDAQFCL  136 (265)
T ss_pred             EEcCEEEechhhHhhhcC--EEEEeCCCEEeC
Confidence            999999999999999984  588888887766

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=80.04  E-value=14  Score=33.17  Aligned_cols=90  Identities=14%  Similarity=0.135  Sum_probs=58.9

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCcccc------------H-hhHHHHHHHhhccCCCEEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY------------E-TEAFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G~------------v-~aGlAIYDtm~~ik~~V~Ti~  176 (258)
                      ++.++.+.+.+.+..++.++   ++. +.|.+.|... .|-.+..            . .....++..|...+.||...+
T Consensus        25 l~~~~~~~l~~~l~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav  101 (257)
T PRK07658         25 LSSQVLHELSELLDQVEKDD---NVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAI  101 (257)
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            67778888887777666432   333 3344444221 1111110            0 112346677888899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      -|.|.+.|.-|+++++  -|++.++++|-+
T Consensus       102 ~G~a~GgG~~lalacD--~ria~~~a~f~~  129 (257)
T PRK07658        102 HGAALGGGLELAMSCH--IRFATESAKLGL  129 (257)
T ss_pred             cCeeeeHHHHHHHhCC--EEEecCCCcccC
Confidence            9999999999999994  688888887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
3st9_A	197	Crystal Structure Of Clpp In Heptameric Form From S		6e-14
3v5i_A	203	The Crystal Structure Of The Mutant Clpp S98a (Stap		6e-14
3qwd_A	203	Crystal Structure Of Clpp From Staphylococcus Aureu		7e-14
3mt6_R	207	Structure Of Clpp From Escherichia Coli In Complex		1e-12
3tt6_A	196	Structure Of Clpp From Bacillus Subtilis In Compres		2e-12
3tt7_A	197	Structure Of Clpp From Bacillus Subtilis In Complex		2e-12
1tg6_A	277	Crystallography And Mutagenesis Point To An Essenti		2e-12
3kti_A	199	Structure Of Clpp In Complex With Adep1 Length = 19		3e-12
3ktg_A	199	Structure Of Clpp From Bacillus Subtilis In Monocli		3e-12
2zl3_A	196	Crystal Structure Of H.Pylori Clpp S99a Length = 19		4e-12
2zl0_A	196	Crystal Structure Of H.Pylori Clpp Length = 196		4e-12
1yg8_A	193	The Structure Of A V6a Variant Of Clpp. Length = 19		5e-12
3hln_A	193	Crystal Structure Of Clpp A153c Mutant With Inter-H		5e-12
1tyf_A	193	The Structure Of Clpp At 2.3 Angstrom Resolution Su		5e-12
4gm2_A	205	The Crystal Structure Of A Peptidase From Plasmodiu		2e-11
4hnk_A	219	Crystal Structure Of An Enzyme Length = 219		2e-11
3q7h_A	195	Structure Of The Clpp Subunit Of The Atp-Dependent		3e-09
3p2l_A	201	Crystal Structure Of Atp-Dependent Clp Protease Sub		2e-08
1y7o_A	218	The Structure Of Streptococcus Pneumoniae A153p Clp		3e-05

>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From Staphylococcus Aureus Length = 197

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G 
Sbjct: 21  DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 72
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
            T  FAIYD + ++KP + T+C+G                     P++ +MI Q
Sbjct: 73  VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 126

>pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a (Staphylococcus Aureus) Length = 203

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G 
Sbjct: 19  DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
            T  FAIYD + ++KP + T+C+G                     P++ +MI Q
Sbjct: 71  VTAGFAIYDTIQHIKPDVQTICIGMAAAMGSFLLAAGAKGKRFALPNAEVMIHQ 124

>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus Length = 203

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G 
Sbjct: 19  DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
            T  FAIYD + ++KP + T+C+G                     P++ +MI Q
Sbjct: 71  VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124

>pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With Adep1 Length = 207

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 14/144 (9%)
Query: 65  DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
           D+F    P   ++ MVI  TS     +   D+ S L K R+++L       +  LI+A+ 
Sbjct: 8   DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXX 184
           L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G      
Sbjct: 62  LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 XXXXXXXXXXXXXXXPSSTIMIKQ 208
                          P+S +MI Q
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQ 137

>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed State Length = 196

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG +   +V   I+++ L+L  ED EK I LYINS G        G 
Sbjct: 18  DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPG--------GS 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
            T   AIYD M ++KP + T+C+G                     P+S +MI Q
Sbjct: 70  ITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQ 123

>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With Dfp Length = 197

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG +   +V   I+++ L+L  ED EK I LYINS G        G 
Sbjct: 19  DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
            T   AIYD M ++KP + T+C+G                     P+S +MI Q
Sbjct: 71  ITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQ 124

>pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role For The N- Terminus Of Human Mitochondrial Clpp Length = 277

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L + RIV +      SV  L++A+ L+LQ E  +KPI++YINS G        G 
Sbjct: 74  DIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG--------GV 125
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
            T   AIYD M Y+  PI T CVG                     P+S IMI Q
Sbjct: 126 VTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQ 179

>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1 Length = 199

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG +   +V   I+++ L+L  ED EK I LYINS G        G 
Sbjct: 18  DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPG--------GS 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
            T   AIYD M ++KP + T+C+G                     P+S +MI Q
Sbjct: 70  ITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQ 123

>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic Crystal Form Length = 199

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG +   +V   I+++ L+L  ED EK I LYINS G        G 
Sbjct: 18  DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPG--------GS 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
            T   AIYD M ++KP + T+C+G                     P+S +MI Q
Sbjct: 70  ITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQ 123

>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a Length = 196

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 81  IPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLY 139
           IP+    T   +   D+ S L K+RIV L      SV   I+A+ L+L+ ED EK I LY
Sbjct: 5   IPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLY 64
Query: 140 INSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXX 199
           INS G        G  T   +IYD M +++P + T+C+G                     
Sbjct: 65  INSPG--------GVITSGLSIYDTMNFIRPDVSTICIGQAAAMGAFLLSCGAKGKRFSL 116
Query: 200 PSSTIMIKQ 208
           P S IMI Q
Sbjct: 117 PHSRIMIHQ 125

>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp Length = 196

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 81  IPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLY 139
           IP+    T   +   D+ S L K+RIV L      SV   I+A+ L+L+ ED EK I LY
Sbjct: 5   IPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLY 64
Query: 140 INSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXX 199
           INS G        G  T   +IYD M +++P + T+C+G                     
Sbjct: 65  INSPG--------GVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSL 116
Query: 200 PSSTIMIKQ 208
           P S IMI Q
Sbjct: 117 PHSRIMIHQ 125

>pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp. Length = 193

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G 
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GV 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
            T   +IYD M ++KP + T+C+G                     P+S +MI Q
Sbjct: 70  ITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQ 123

>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds Length = 193

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G 
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GV 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
            T   +IYD M ++KP + T+C+G                     P+S +MI Q
Sbjct: 70  ITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQ 123

>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis Length = 193

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G 
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GV 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
            T   +IYD M ++KP + T+C+G                     P+S +MI Q
Sbjct: 70  ITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQ 123

>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium Falciparum Length = 205

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 98  SYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE-- 155
           S L   RI++L     P ++E I+++ LYL+YE   KPI+LYINSTG     + +     
Sbjct: 23  SLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGI 82
Query: 156 TEAFAIYDVMGYVKPPIFTLCVG 178
           T+  +I DV+ Y+   ++T C+G
Sbjct: 83  TDVISIVDVINYISSDVYTYCLG 105

>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme Length = 219

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           ++ S L   RI++L     P ++E I+++ LYL+YE   KPI+LYINSTG     + +  
Sbjct: 34  NIPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINL 93
Query: 155 E--TEAFAIYDVMGYVKPPIFTLCVG 178
              T+  +I DV+ Y+   ++T C+G
Sbjct: 94  NGITDVISIVDVINYISSDVYTYCLG 119

>pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii Length = 195

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+R+++L          L +A+ L+L+ E+  K I LYINS G        G 
Sbjct: 20  DIYSRLLKDRVIFLVGQVEDHXANLAIAQXLFLESENPNKDINLYINSPG--------GA 71
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQ 208
            T A AIYD   +VKP + TLC+G                     P S++ I Q
Sbjct: 72  VTSAXAIYDTXQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVXIHQ 125

>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P From Francisella Tularensis Length = 201

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 87  TAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT 146
           TA  +   D+ S L K RIV+L          L++A+ L+L+ ED +K IY YINS G  
Sbjct: 14  TAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGX 73
Query: 147 KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMI 206
                  Y+T  F        +KP + T+C+G                     PSS I I
Sbjct: 74  VTAGXGVYDTXQF--------IKPDVSTICIGLAASXGSLLLAGGAKGKRYSLPSSQIXI 125
Query: 207 KQ 208
            Q
Sbjct: 126 HQ 127

>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp Length = 218

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 72  PR-SPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYE 130
           PR S +I +VI  TS     +   D+ S L K+RI+ L      +    ++A+ L+L  +
Sbjct: 16  PRGSHMIPVVIEQTS---RGERSYDIYSRLLKDRIIXLTGPVEDNXANSVIAQLLFLDAQ 72
Query: 131 DVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 178
           D  K IYLY+N+ G        G  +   AI D   ++K  + T+  G
Sbjct: 73  DSTKDIYLYVNTPG--------GSVSAGLAIVDTXNFIKADVQTIVXG 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	5e-36
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	8e-36
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	1e-35
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	2e-35
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	2e-34
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	2e-34
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	2e-33

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A Length = 193

 Score =  125 bits (317), Expect = 5e-36
 Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 8/114 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G 
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GV 69

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
            T   +IYD M ++KP + T+C+G A    A LL AGAKG R  LP+S +MI Q
Sbjct: 70  ITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQ 123

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Length = 218

 Score =  126 bits (318), Expect = 8e-36
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 13/140 (9%)

Query: 70  SKPRSPVITMVIPFTS-GTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQ 128
               S +I +VI  TS G        D+ S L K+RI+ L      ++   ++A+ L+L 
Sbjct: 15  VPRGSHMIPVVIEQTSRGERSY----DIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLD 70

Query: 129 YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL 188
            +D  K IYLY+N+ G        G  +   AI D M ++K  + T+ +G A     ++ 
Sbjct: 71  AQDSTKDIYLYVNTPG--------GSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIA 122

Query: 189 GAGAKGNRAALPSSTIMIKQ 208
            +GAKG R  LP++  MI Q
Sbjct: 123 SSGAKGKRFMLPNAEYMIHQ 142

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} Length = 201

 Score =  125 bits (316), Expect = 1e-35
 Identities = 49/114 (42%), Positives = 65/114 (57%), Gaps = 8/114 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K RIV+L          L++A+ L+L+ ED +K IY YINS G        G 
Sbjct: 22  DIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPG--------GM 73

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
            T    +YD M ++KP + T+C+G A    +LLL  GAKG R +LPSS IMI Q
Sbjct: 74  VTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQ 127

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A Length = 203

 Score =  124 bits (314), Expect = 2e-35
 Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 8/114 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G 
Sbjct: 19  DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
            T  FAIYD + ++KP + T+C+G A    + LL AGAKG R ALP++ +MI Q
Sbjct: 71  VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Length = 208

 Score =  121 bits (307), Expect = 2e-34
 Identities = 40/111 (36%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 98  SYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETE 157
             L   RI++LG      +   + A+ L L  ED  K I LYINS G        G  + 
Sbjct: 22  ERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG--------GSISA 73

Query: 158 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
             AIYD M      I T  +G A      LL AG KG R ALP + I++ Q
Sbjct: 74  GMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQ 124

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Length = 277

 Score =  124 bits (312), Expect = 2e-34
 Identities = 61/190 (32%), Positives = 81/190 (42%), Gaps = 28/190 (14%)

Query: 24  TSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPF 83
            S R       L+  F +                    L       +    P+I +V+  
Sbjct: 13  ASCRYPALGPRLAAHFPAQRP-------PQRTLQNGLALQRCLHATATRALPLIPIVV-- 63

Query: 84  TSGTAWEQPPP-----DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYL 138
                 EQ        D+ S L + RIV +      SV  L++A+ L+LQ E  +KPI++
Sbjct: 64  ------EQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHM 117

Query: 139 YINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAA 198
           YINS G        G  T   AIYD M Y+  PI T CVG A    +LLL AG  G R +
Sbjct: 118 YINSPG--------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHS 169

Query: 199 LPSSTIMIKQ 208
           LP+S IMI Q
Sbjct: 170 LPNSRIMIHQ 179

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 Length = 215

 Score =  120 bits (302), Expect = 2e-33
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+  + +K RI+YL         + ++++ LYL   +    I +YINS G        G 
Sbjct: 31  DVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNIN-HNDIKIYINSPG--------GS 81

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
             E  AI D+  Y+K  I T+  G     A+++L +G KG R +LP+  IMI Q
Sbjct: 82  INEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQ 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	100.0
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	100.0
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	100.0
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	100.0
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	100.0
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	100.0
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	100.0
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	99.97
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.68
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.34
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	98.61
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	98.46
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	96.89
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	96.66
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	94.54
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	94.44
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	94.39
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	94.37
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	93.98
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	93.91
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	93.91
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	93.6
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	93.23
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	92.95
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	92.84
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	92.79
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	92.76
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	92.69
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	92.56
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	92.48
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	92.31
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	92.21
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	92.2
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	91.92
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	91.67
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	91.42
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	91.19
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	91.09
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	91.05
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	90.78
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	90.65
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	90.57
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	90.43
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	90.24
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	89.93
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	89.72
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	89.66
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	89.63
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	89.33
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	89.14
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	89.02
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	88.96
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	88.9
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	88.66
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	88.51
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	88.09
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	88.09
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	88.0
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	87.95
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	87.84
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	87.83
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	87.47
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	87.26
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	87.21
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	87.14
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	86.92
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	86.72
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	86.66
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	86.59
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	86.54
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	86.27
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	86.26
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	86.17
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	85.66
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	85.49
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	85.12
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	84.17
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	84.12
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	83.85
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	83.49
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	83.27
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	82.07
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	81.15
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	80.62
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	80.46
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	80.19

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=100.00  E-value=2.3e-45  Score=323.01  Aligned_cols=163  Identities=28%  Similarity=0.443  Sum_probs=129.7

Q ss_pred             CCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhh
Q 025057           89 WEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMG  166 (258)
Q Consensus        89 ~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~  166 (258)
                      ..++++|||++||++|||||+++||++++++|++||+||+.+|+.++|+|||||||++.  +|+.+|+|++|++|||+|+
T Consensus        14 ~~~~~~di~s~Ll~~Riifl~~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~m~   93 (205)
T 4gm2_A           14 RENLYFQGPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVIN   93 (205)
T ss_dssp             --------CHHHHTTTEEEECSCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHHHH
T ss_pred             CCCCCcCHHHHHhcCCEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999663  5677899999999999999


Q ss_pred             ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCchh-h---HHHHHHHHHHHHHHHHHHhhcccccccc
Q 025057          167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTG-I---CLLKSSLTWLNSVKLNVLILSLPICSQL  242 (258)
Q Consensus       167 ~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~~-~---~~le~~l~~L~~~~~nvyil~~~~~s~l  242 (258)
                      +++++|+|+|+|+|||||++||+||+||+|+++|||++|||||+++. .   .+++...++|+..+..+... +...++.
T Consensus        94 ~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~i-ya~~TG~  172 (205)
T 4gm2_A           94 YISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEI-ISKNTEK  172 (205)
T ss_dssp             HSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHH-HHHHHTC
T ss_pred             hcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHH-HHHHhCC
Confidence            99999999999999999999999999999999999999999999743 2   26666666655444333222 1223444


Q ss_pred             CCcchhhhhc
Q 025057          243 GGLKVKQQMS  252 (258)
Q Consensus       243 ~~~~~~~~~~  252 (258)
                      .--+|.+.|+
T Consensus       173 ~~e~I~~~m~  182 (205)
T 4gm2_A          173 DTNVISNVLE  182 (205)
T ss_dssp             CHHHHHHHTT
T ss_pred             CHHHHHHHhc
Confidence            4345666554

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=100.00  E-value=7.7e-39  Score=279.54  Aligned_cols=166  Identities=34%  Similarity=0.480  Sum_probs=135.0

Q ss_pred             CeeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcccc
Q 025057           75 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY  154 (258)
Q Consensus        75 ~~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~  154 (258)
                      +++|+|++++   .++++.+|||++||++|||||+|+|++++++.+++||++|+.+++.++|.|||||||        |+
T Consensus         5 ~~~p~~~~~~---~~~~~~~d~~~~l~~~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~   73 (201)
T 3p2l_A            5 NLVPTVIEKT---AGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPG--------GM   73 (201)
T ss_dssp             CCSSEECCC--------CCEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BC
T ss_pred             CcCCeeeeeC---CCCCcccCHHHHhhCCCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC--------CC
Confidence            5789999865   334788999999999999999999999999999999999999999999999999999        89


Q ss_pred             HhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch--h-hHHHHHHHHHHHHHHHHH
Q 025057          155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT--G-ICLLKSSLTWLNSVKLNV  231 (258)
Q Consensus       155 v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~--~-~~~le~~l~~L~~~~~nv  231 (258)
                      |++|++|||+|++++.+|+|+|.|+|||+|++|+++|++|+|+++|||++|||||+++  | ..+++...++++..+..+
T Consensus        74 v~~~~~I~~~i~~~~~~v~t~~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~~G~a~di~~~a~~l~~~~~~~  153 (201)
T 3p2l_A           74 VTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRL  153 (201)
T ss_dssp             HHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEcCEehhHHHHHHHcCccCCEEEcCCCeEEEeccccccCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999973  2 336666666655443332


Q ss_pred             HhhccccccccCCcchhhhhc
Q 025057          232 LILSLPICSQLGGLKVKQQMS  252 (258)
Q Consensus       232 yil~~~~~s~l~~~~~~~~~~  252 (258)
                      .. .+...++..--+|.+.|+
T Consensus       154 ~~-~ya~~tG~~~e~i~~~~~  173 (201)
T 3p2l_A          154 NK-VLAHHTGQDLETIVKDTD  173 (201)
T ss_dssp             HH-HHHHHHCCCHHHHHHHTS
T ss_pred             HH-HHHHHhCcCHHHHHHHhh
Confidence            21 122233333335555554

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=100.00  E-value=1e-38  Score=279.15  Aligned_cols=144  Identities=39%  Similarity=0.585  Sum_probs=126.6

Q ss_pred             CeeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcccc
Q 025057           75 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY  154 (258)
Q Consensus        75 ~~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~  154 (258)
                      +++|+|++++   .++++.+|||++||++|||||+|+|++++++.+++||++|+.+++.++|.|||||||        |+
T Consensus         2 ~~~p~~~~~~---~~~~~~~d~~~~l~~~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG--------G~   70 (203)
T 3qwd_A            2 NLIPTVIETT---NRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS   70 (203)
T ss_dssp             -CCCEEECC--------CEEEHHHHHHHTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BC
T ss_pred             CCCCeeeeec---CCCCcccCHHHHHhcCCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCC--------CC
Confidence            4689999865   234788999999999999999999999999999999999999999999999999999        89


Q ss_pred             HhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch--h-hHHHHHHHHHHHHHHH
Q 025057          155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT--G-ICLLKSSLTWLNSVKL  229 (258)
Q Consensus       155 v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~--~-~~~le~~l~~L~~~~~  229 (258)
                      |++|++|||+|+++++||+|+|.|+|||+|++|+++|++|+|+++|||++|||||+++  | ..+++...++++..+.
T Consensus        71 v~~~~~I~~~i~~~~~~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~  148 (203)
T 3qwd_A           71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTRE  148 (203)
T ss_dssp             HHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999973  2 2367766666554433

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=100.00  E-value=2.4e-36  Score=276.01  Aligned_cols=143  Identities=39%  Similarity=0.571  Sum_probs=121.3

Q ss_pred             CCeeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccc
Q 025057           74 SPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLG  153 (258)
Q Consensus        74 ~~~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G  153 (258)
                      ++++|++++++.   .+++++|||++||++|||||+|+|++++++.+++||++|+.+++.++|.|||||||        |
T Consensus        56 ~~~~p~~~~~~~---~~~~~~di~s~ll~erII~l~G~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPG--------G  124 (277)
T 1tg6_A           56 LPLIPIVVEQTG---RGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG--------G  124 (277)
T ss_dssp             -CCCCBCC------------CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------B
T ss_pred             CCCCCeeeccCC---CCcccccHHHHhhcCcEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC--------C
Confidence            357899988652   23567999999999999999999999999999999999999998999999999999        8


Q ss_pred             cHhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch--h-hHHHHHHHHHHHHH
Q 025057          154 YETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT--G-ICLLKSSLTWLNSV  227 (258)
Q Consensus       154 ~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~--~-~~~le~~l~~L~~~  227 (258)
                      +|++|++|||+|+++++||+|+|.|+|||+|++|+++|++|||+++||+++|||||+++  | ..+++...++++..
T Consensus       125 sV~ag~aIyd~I~~~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~  201 (277)
T 1tg6_A          125 VVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKL  201 (277)
T ss_dssp             CHHHHHHHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999874  2 22555554454433

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=100.00  E-value=4.4e-34  Score=245.49  Aligned_cols=140  Identities=39%  Similarity=0.592  Sum_probs=122.2

Q ss_pred             eeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccH
Q 025057           76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE  155 (258)
Q Consensus        76 ~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v  155 (258)
                      ++|+|++.+   .++++++|+|++||++|||||+|+|++.+++.++++|++++.+++.++|.|||||||        |+|
T Consensus         2 ~~p~~~~~~---~~~~~~~d~~~~l~~~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG--------G~v   70 (193)
T 1yg6_A            2 LVPMVIEQT---SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVI   70 (193)
T ss_dssp             CSCBCCSSS---CSSCCCCBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BCH
T ss_pred             CCCeecccC---CCCcchhhHHHHHhcCCEEEEcCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC--------CCH
Confidence            367776643   223567899999999999999999999999999999999999888999999999999        899


Q ss_pred             hhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch--h-hHHHHHHHHHHHH
Q 025057          156 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT--G-ICLLKSSLTWLNS  226 (258)
Q Consensus       156 ~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~--~-~~~le~~l~~L~~  226 (258)
                      ++|++|||+|++++.||+|+|.|+|||+|++|+++|++++|++.||+++|+|||+++  | ..+++...++++.
T Consensus        71 ~a~~~I~~~i~~~~~pV~~~v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~  144 (193)
T 1yg6_A           71 TAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILK  144 (193)
T ss_dssp             HHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEEeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999963  2 2244444444443

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=100.00  E-value=7.7e-34  Score=249.26  Aligned_cols=129  Identities=33%  Similarity=0.511  Sum_probs=113.6

Q ss_pred             CCCeeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcc
Q 025057           73 RSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKL  152 (258)
Q Consensus        73 ~~~~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~  152 (258)
                      .+++||+|++++.   ++++++|||++||++|||||+|+|++++++.|+++|++|+.+++.++|.|||||||        
T Consensus        18 ~~~~~p~~~~~~~---~~~~~~d~~~~l~~~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPG--------   86 (218)
T 1y7o_A           18 GSHMIPVVIEQTS---RGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPG--------   86 (218)
T ss_dssp             ----CCEECC----------CEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECC--------
T ss_pred             CCCCCceeeecCC---CCcchhhHHHHhhcCCEEEEeCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC--------
Confidence            3457889887652   23567999999999999999999999999999999999999998999999999999        


Q ss_pred             ccHhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch
Q 025057          153 GYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT  212 (258)
Q Consensus       153 G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~  212 (258)
                      |++++|++|||+|++++.||.|+|.|+|||+|++|+++|++|+|++.||++||+|||+++
T Consensus        87 G~v~ag~~I~~~i~~~~~pV~t~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~~g  146 (218)
T 1y7o_A           87 GSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGG  146 (218)
T ss_dssp             BCHHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEccEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccccc
Confidence            899999999999999999999999999999999999999999999999999999999963

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=100.00  E-value=5e-33  Score=244.39  Aligned_cols=117  Identities=32%  Similarity=0.546  Sum_probs=111.8

Q ss_pred             CCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhh
Q 025057           87 TAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMG  166 (258)
Q Consensus        87 ~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~  166 (258)
                      ..+.++++|+|++||++|+|||+|+|++.+++.++++|++|+.+++ ++|.|||||||        |+|++|++|||+|+
T Consensus        23 ~~~~~~~~d~~~~l~~~riI~l~G~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPG--------Gsv~a~~~I~~~i~   93 (215)
T 2f6i_A           23 MDIKDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINH-NDIKIYINSPG--------GSINEGLAILDIFN   93 (215)
T ss_dssp             CCCSCSSHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECC--------BCHHHHHHHHHHHH
T ss_pred             CccccccccHHHHHhCceEEEEccEECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCC--------CCHHHHHHHHHHHH
Confidence            3445678999999999999999999999999999999999999888 99999999999        89999999999999


Q ss_pred             ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch
Q 025057          167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT  212 (258)
Q Consensus       167 ~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~  212 (258)
                      +++.||+|+|.|+|||+|++|+++|++|+|+|.||+++|||||+++
T Consensus        94 ~~~~pV~t~v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~  139 (215)
T 2f6i_A           94 YIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGN  139 (215)
T ss_dssp             HSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCS
T ss_pred             hcCCCEEEEEeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccc
Confidence            9999999999999999999999999999999999999999999974

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=99.97  E-value=2.9e-32  Score=237.16  Aligned_cols=126  Identities=33%  Similarity=0.418  Sum_probs=108.3

Q ss_pred             eeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccH
Q 025057           76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE  155 (258)
Q Consensus        76 ~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v  155 (258)
                      .+|++++.+   .++++++|+|++|+++|+|||+|+|++.+++.++++|++++.+++.++|.|||||||        |++
T Consensus         3 ~~p~~~~~~---~~~~~~~~~~~~l~~~rii~l~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPG--------G~v   71 (208)
T 2cby_A            3 QVTDMRSNS---QGLSLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG--------GSI   71 (208)
T ss_dssp             ---------------CHHHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BCH
T ss_pred             CCCeeeccC---CCCcchhhHHHHhhcCcEEEEcCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCC--------CCH
Confidence            467777654   223567899999999999999999999999999999999998888999999999999        899


Q ss_pred             hhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch
Q 025057          156 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT  212 (258)
Q Consensus       156 ~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~  212 (258)
                      ++|++|||+|+.++.||+|+|.|+|||+|++|+++|++++|++.||+++|+|||+++
T Consensus        72 ~a~~~I~~~i~~~~~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~  128 (208)
T 2cby_A           72 SAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGG  128 (208)
T ss_dssp             HHHHHHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC---
T ss_pred             HHHHHHHHHHHhcCCCEEEEECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEeccccc
Confidence            999999999999999999999999999999999999999999999999999999964

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.68  E-value=1e-16  Score=142.46  Aligned_cols=97  Identities=11%  Similarity=0.066  Sum_probs=90.6

Q ss_pred             cEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEEEEE---eeee
Q 025057          104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLC---VGNA  180 (258)
Q Consensus       104 RIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~---~G~A  180 (258)
                      .+|+|.+.|++.+++.+.++|..++. ++.+.|.|+|||||        |+++++.+|||+|++++.||.++|   .|.|
T Consensus        11 ~vI~i~g~I~~~~~~~l~~~l~~a~~-~~~~~Ivl~inspG--------G~v~~~~~i~~~i~~~~~PVia~v~p~~G~A   81 (230)
T 3viv_A           11 YVAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPG--------GRADAMMNIVQRIQQSKIPVIIYVYPPGASA   81 (230)
T ss_dssp             EEEEEESCBCHHHHHHHHHHHHHHHH-TTCSEEEEEEEBSC--------EEHHHHHHHHHHHHTCSSCEEEEECSTTCEE
T ss_pred             EEEEEeCEECHHHHHHHHHHHHHHhc-CCCCEEEEEEeCCC--------cCHHHHHHHHHHHHhCCCCEEEEEecCCCEE
Confidence            35789999999999999999998875 45889999999999        899999999999999999999999   9999


Q ss_pred             hhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057          181 WGEAALLLGAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       181 ASmAslILaAG~kgkR~alPnSriMIHQP~~  211 (258)
                      +|+|++|+++|+  +|+|.|+++|++|+|..
T Consensus        82 asaG~~ia~a~d--~~~a~p~a~ig~~~p~~  110 (230)
T 3viv_A           82 ASAGTYIALGSH--LIAMAPGTSIGACRPIL  110 (230)
T ss_dssp             ETHHHHHHHTSS--EEEECTTCEEECCCEEE
T ss_pred             hHHHHHHHHhcC--ceeECCCCEEEecccee
Confidence            999999999996  59999999999999983

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.34  E-value=3.3e-13  Score=133.04  Aligned_cols=107  Identities=13%  Similarity=0.061  Sum_probs=72.8

Q ss_pred             CChHHhhhcCcEEEeCcee---ChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCC
Q 025057           94 PDLASYLYKNRIVYLGMSF---VPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP  170 (258)
Q Consensus        94 ~Di~s~Ll~eRIIfLgg~I---dd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~  170 (258)
                      .|.+++|+++   |+++++   ++..++.|+++|..+..+++.+.|.|+||||||       |++.++.+|||+|+.++.
T Consensus        49 ~~~~~~ll~~---~~~~~~~~~~~~~~~~i~~~L~~a~~d~~ik~I~L~inspGg-------G~v~~~~~I~~~i~~~k~  118 (593)
T 3bf0_A           49 SQRFSKLSRQ---LLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAG-------GDQPSMQYIGKALKEFRD  118 (593)
T ss_dssp             ---------------------CCEEEHHHHHHHHHHHHHCTTCCCEEEECTEEEE-------CCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHhh---hccCCcccccccCHHHHHHHHHHHHhCCCceEEEEEeCCCCC-------CcHHHHHHHHHHHHHHHh
Confidence            5788889988   888775   467899999999999888888999999999995       689999999999999863


Q ss_pred             C-EEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057          171 P-IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       171 ~-V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~  211 (258)
                      . +.++|.|..+++|+.+++++. +++++.|++.+|+|+|..
T Consensus       119 ~gkpvva~~~~aas~~y~lAsaa-d~i~~~P~~~vg~~g~~~  159 (593)
T 3bf0_A          119 SGKPVYAVGENYSQGQYYLASFA-NKIWLSPQGVVDLHGFAT  159 (593)
T ss_dssp             TTCCEEEEESCEEHHHHHHHTTS-SEEEECTTCCEECCCCBC
T ss_pred             cCCeEEEEEccchhHHHHHHHhC-CEEEECCCceEEEecccc
Confidence            2 333444444445555554444 789999999999999986

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=98.61  E-value=1e-07  Score=83.91  Aligned_cols=83  Identities=20%  Similarity=0.127  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhcc----CCCEEEEEeeeehhHHHHHHccC
Q 025057          116 VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV----KPPIFTLCVGNAWGEAALLLGAG  191 (258)
Q Consensus       116 ~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~i----k~~V~Ti~~G~AASmAslILaAG  191 (258)
                      ..+.+..+|..++.++.-+-|.|.+||||        |++.++..|++.++.+    +.||.+.+-|.|+|.|..|.+++
T Consensus        30 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~G--------g~~~~~~~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~  101 (240)
T 3rst_A           30 NHRTFLKNLERAKDDKTVKGIVLKVNSPG--------GGVYESAEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAA  101 (240)
T ss_dssp             CHHHHHHHHHHHHHCTTEEEEEEEEEECC--------BCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHhCCCcEEEEEEecCCC--------CCHHHHHHHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhC
Confidence            35778888888877766788999999999        8899999999999874    66999999999999999999999


Q ss_pred             CCCCeeecCCceEeEec
Q 025057          192 AKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       192 ~kgkR~alPnSriMIHQ  208 (258)
                      +  .|++.|++++.++-
T Consensus       102 D--~i~a~~~a~~g~~G  116 (240)
T 3rst_A          102 D--KIFATPETLTGSLG  116 (240)
T ss_dssp             S--EEEECTTCEEECCC
T ss_pred             C--eeEECCCCeEeccc
Confidence            4  69999999999983

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=98.46  E-value=1.3e-07  Score=93.31  Aligned_cols=94  Identities=18%  Similarity=0.119  Sum_probs=80.4

Q ss_pred             EEEeCceeChh-------hHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhcc---CCCEEE
Q 025057          105 IVYLGMSFVPS-------VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFT  174 (258)
Q Consensus       105 IIfLgg~Idd~-------~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~i---k~~V~T  174 (258)
                      +|.+.++|.+.       ..+.+.+.|..++.++..+-|.|++||||        |++.++..|++.++.+   +.||.+
T Consensus       305 vI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~spG--------G~~~~~~~i~~~i~~l~~~~kPVia  376 (593)
T 3bf0_A          305 VVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVV  376 (593)
T ss_dssp             EEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEE--------ECHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecCCC--------CCHHHHHHHHHHHHHHHhCCCCEEE
Confidence            46778888554       37889999988887766789999999999        8999998999988764   479999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      .+-|.|+|.|..|+++++  +|+|.|++++....
T Consensus       377 ~v~g~AasgG~~iA~aaD--~iva~p~a~~Gsig  408 (593)
T 3bf0_A          377 SMGGMAASGGYWISTPAN--YIVANPSTLTGSIG  408 (593)
T ss_dssp             EEEEEEETHHHHTTTTCS--EEEECTTCEEECCC
T ss_pred             EECCChHHHHHHHHHhCC--EEEECCCCEeecce
Confidence            999999999999999995  69999999987543

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=96.89  E-value=0.00071  Score=63.11  Aligned_cols=105  Identities=20%  Similarity=0.199  Sum_probs=77.4

Q ss_pred             cCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCC--CCccccHhhHHHHHHHhhccCCCEEEEEeee
Q 025057          102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGN  179 (258)
Q Consensus       102 ~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~--~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~  179 (258)
                      ++++-|.+|.++++....+..-+ .+..+. .-||-.++||||....  -|..|....+..+...+...+.||.+++.|-
T Consensus       145 ~~~~~~~~G~~~~~~~~Ka~r~~-~~A~~~-~lPlI~lvDt~Ga~~g~~aE~~g~~~~~a~~l~al~~~~vPvIavV~G~  222 (339)
T 2f9y_A          145 KEKIRRNFGMPAPEGYRKALRLM-QMAERF-KMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGE  222 (339)
T ss_dssp             THHHHTGGGCCCHHHHHHHHHHH-HHHHHT-TCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEE
T ss_pred             hhhhhhhcCCCCHHHHHHHHHHH-HHHhhc-CCCEEEEEeCCCCccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            44666788999999888777544 444333 5799999999995431  1112333444556677888899999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCCceEeEecCC
Q 025057          180 AWGEAALLLGAGAKGNRAALPSSTIMIKQAG  210 (258)
Q Consensus       180 AASmAslILaAG~kgkR~alPnSriMIHQP~  210 (258)
                      |+|.|+.++++|  +.++|.|++++-+=.|.
T Consensus       223 a~GGGa~~~~~~--D~via~p~A~~~v~~Pe  251 (339)
T 2f9y_A          223 GGSGGALAIGVG--DKVNMLQYSTYSVISPE  251 (339)
T ss_dssp             EEHHHHHTTCCC--SEEEECTTCEEESSCHH
T ss_pred             cCcHHHHHHhcc--CeeeecCCCEEEeeccc
Confidence            999999988887  56999999998764443

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=96.66  E-value=0.0011  Score=61.54  Aligned_cols=105  Identities=20%  Similarity=0.228  Sum_probs=76.5

Q ss_pred             cCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCC--CccccHhhHHHHHHHhhccCCCEEEEEeee
Q 025057          102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGG--EKLGYETEAFAIYDVMGYVKPPIFTLCVGN  179 (258)
Q Consensus       102 ~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~--~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~  179 (258)
                      ++++-+.+|.++++....+.. ++.+..+. .-||-.++||||....-  |..|....+..+...|...+.||.+++.|-
T Consensus       131 ~~~~~~~~G~~~~~~~~Ka~r-~~~~A~~~-~~PlI~lvdt~Ga~~g~~ae~~g~~~~~a~~l~al~~~~vPvIavV~G~  208 (327)
T 2f9i_A          131 KDNIYRNFGMAHPEGYRKALR-LMKQAEKF-NRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGE  208 (327)
T ss_dssp             HHHHHTGGGCCCHHHHHHHHH-HHHHHHHT-TCCEEEEEEESCSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEE
T ss_pred             hhhhhhhcCCCCHHHHHHHHH-HHHHHhhc-CCCEEEEEeCCCCCcchhhhhhhhHHHHHHHHHHHHhCCCCEEEEEECC
Confidence            345556788999988877775 44444333 57999999999954311  112333444556677888899999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCCceEeEecCC
Q 025057          180 AWGEAALLLGAGAKGNRAALPSSTIMIKQAG  210 (258)
Q Consensus       180 AASmAslILaAG~kgkR~alPnSriMIHQP~  210 (258)
                      |+|.|+.++++|  +.++|.|++++-+=-|.
T Consensus       209 a~GGGa~~~~~~--D~via~~~A~~~v~~pe  237 (327)
T 2f9i_A          209 GGSGGALGIGIA--NKVLMLENSTYSVISPE  237 (327)
T ss_dssp             EBHHHHHTTCCC--SEEEEETTCBCBSSCHH
T ss_pred             cChHHHHHHHCC--CEEEEcCCceEeecCch
Confidence            999999998887  56999999998764443

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=94.54  E-value=0.049  Score=53.80  Aligned_cols=101  Identities=18%  Similarity=0.189  Sum_probs=76.0

Q ss_pred             CceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHHHH
Q 025057          109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAAL  186 (258)
Q Consensus       109 gg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAsl  186 (258)
                      +|.++.+.+..... ++.+-. ...-||-.++|+||-..  .-|.-|-+.+|-.+.+.+...+.|+.|+++|-|+|.|.+
T Consensus       360 ~G~l~~~~a~Kaar-~i~~a~-~~~iPlv~lvDt~Gf~~G~~~E~~Gi~~~ga~~l~a~~~~~VP~isvI~g~~~Ggg~~  437 (548)
T 2bzr_A          360 AGCLDINASEKAAR-FVRTCD-CFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYC  437 (548)
T ss_dssp             GGCBCHHHHHHHHH-HHHHHH-HTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             CCCCCHHHHHHHHH-HHHHHH-hcCCCEEEEeeccCCCCChHHHHhhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHH
Confidence            46788887776665 444432 34679999999999321  112225667888889999999999999999999999888


Q ss_pred             HHccCC--CCCeeecCCceEeEecCCc
Q 025057          187 LLGAGA--KGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       187 ILaAG~--kgkR~alPnSriMIHQP~~  211 (258)
                      .+++..  ....+|.||+++-+-.|.+
T Consensus       438 am~~~~~~~d~~~awp~a~i~Vmgpeg  464 (548)
T 2bzr_A          438 VMGSKDMGCDVNLAWPTAQIAVMGASG  464 (548)
T ss_dssp             HTTCGGGTCSEEEECTTCEEESSCHHH
T ss_pred             HhccccCCCCEEEEcCCCEEEecCHHH
Confidence            776511  3468999999999988886

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=94.44  E-value=0.21  Score=43.52  Aligned_cols=94  Identities=10%  Similarity=0.040  Sum_probs=63.5

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEe----cCCCCCCCCcccc---Hh-----hHHHHHHHhhccCCCEEEEEee
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYIN----STGTTKGGEKLGY---ET-----EAFAIYDVMGYVKPPIFTLCVG  178 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyIN----SpGg~~~~~~~G~---v~-----aGlAIYDtm~~ik~~V~Ti~~G  178 (258)
                      -++.++...+.+.|-.++.++..+-|-|.=+    |.|+.- .+ +..   ..     ....+++.|...+.||...+-|
T Consensus        26 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl-~~-~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  103 (257)
T 2ej5_A           26 AFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDL-SG-VTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNG  103 (257)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC---------CHHHHHHHTHHHHHHHHHHCCSCEEEEECS
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCH-HH-HhhccchhHHHHHHHHHHHHHHHhCCCCEEEEECc
Confidence            3788888889888888876544444444433    333211 00 000   00     1235567778889999999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       179 ~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      .|.+.|.-|+++++  .|++.++++|-+-.
T Consensus       104 ~a~GgG~~lalacD--~ria~~~a~f~~pe  131 (257)
T 2ej5_A          104 AAAGAGMSLALACD--FRLLSEKASFAPAF  131 (257)
T ss_dssp             EEETHHHHHHHHSS--EEEEETTCEEECCG
T ss_pred             cccchhHHHHHhCC--EEEEcCCCEEeCcc
Confidence            99999999999994  69999999877643

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=94.39  E-value=0.29  Score=42.70  Aligned_cols=88  Identities=19%  Similarity=0.168  Sum_probs=65.6

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEe----cCCCCCCCCccccHhh-------------HHHHHHHhhccCCCEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYIN----STGTTKGGEKLGYETE-------------AFAIYDVMGYVKPPIF  173 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyIN----SpGg~~~~~~~G~v~a-------------GlAIYDtm~~ik~~V~  173 (258)
                      -++.++...+...|-.++.++..+-|-|.=+    |.|        +|+.+             .+.+++.|...+.||.
T Consensus        28 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG--------~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI   99 (258)
T 2pbp_A           28 ALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAG--------ADIQEMAKDDPIRLEWLNQFADWDRLSIVKTPMI   99 (258)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECC--------CCHHHHHTCCHHHHHHHCTTHHHHHHHTCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCC--------cCHHHHhcccchhHHHHHHHHHHHHHHhCCCCEE
Confidence            3788888899988888876544444444433    445        34322             0156778888999999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      ..+-|.|.+.|.-|+++++  -|++.++++|-+-.
T Consensus       100 Aav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe  132 (258)
T 2pbp_A          100 AAVNGLALGGGFELALSCD--LIVASSAAEFGFPE  132 (258)
T ss_dssp             EEECSEEETHHHHHHHTSS--EEEEETTCEEECGG
T ss_pred             EEEcCEEEhHHHHHHHhCC--EEEEcCCCEEECcc
Confidence            9999999999999999994  69999999887644

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=94.37  E-value=0.19  Score=44.11  Aligned_cols=86  Identities=16%  Similarity=0.059  Sum_probs=64.1

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEe-----cCCCCCCCCccccHhh-------------------HHHHHHHhhc
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYIN-----STGTTKGGEKLGYETE-------------------AFAIYDVMGY  167 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyIN-----SpGg~~~~~~~G~v~a-------------------GlAIYDtm~~  167 (258)
                      ++.++...+...|-.++.++..+-|-|.=+     |.|        +|+.+                   ...++..|..
T Consensus        28 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG--------~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   99 (263)
T 3lke_A           28 LDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSG--------PRLEDLLICASDQSDVRLREVLHVLNHCVLEIFT   99 (263)
T ss_dssp             CCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECB--------SCHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecC--------cCHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHh
Confidence            788889999988888876554444444333     444        33322                   2346677888


Q ss_pred             cCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          168 VKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       168 ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      .+.||...+-|.|.+.|.-|++++  +-|++.++++|-+-
T Consensus       100 ~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~p  137 (263)
T 3lke_A          100 SPKVTVALINGYAYGGGFNMMLAC--DRRIALRRAKFLEN  137 (263)
T ss_dssp             CSSEEEEEECSEEETHHHHGGGGS--SEEEEETTCEEECC
T ss_pred             CCCCEEEEECCEeeHHHHHHHHHC--CEEEEcCCCEEeCc
Confidence            899999999999999999999999  46999999998653

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=93.98  E-value=0.096  Score=47.88  Aligned_cols=91  Identities=16%  Similarity=0.142  Sum_probs=66.0

Q ss_pred             EeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhH-------HHHHHHhhc---cCCCEEEEE
Q 025057          107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA-------FAIYDVMGY---VKPPIFTLC  176 (258)
Q Consensus       107 fLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aG-------lAIYDtm~~---ik~~V~Ti~  176 (258)
                      |+++.+.....+.+...+-..+. + .-|+-+..+|+|        +++-++       -.|+..+..   .+.|+.+++
T Consensus       129 ~~ggslg~~~~~Ki~r~~e~A~~-~-~~PvI~l~~sGG--------arlqeg~~~l~~~~~i~~al~~~~~~~vP~IavV  198 (304)
T 2f9y_B          129 FMGGSMGSVVGARFVRAVEQALE-D-NCPLICFSASGG--------ARMQEALMSLMQMAKTSAALAKMQERGLPYISVL  198 (304)
T ss_dssp             STTTCBCTHHHHHHHHHHHHHHH-H-TCCEEEEEEESS--------BCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cccCCCCHHHHHHHHHHHHHHHh-C-CCCEEEEECCCC--------cCHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            57888888888888875554433 3 578988999988        444333       234555544   378999999


Q ss_pred             eeeehhHHHHHH-ccCCCCCeeecCCceEeEecC
Q 025057          177 VGNAWGEAALLL-GAGAKGNRAALPSSTIMIKQA  209 (258)
Q Consensus       177 ~G~AASmAslIL-aAG~kgkR~alPnSriMIHQP  209 (258)
                      .|-|++.|+..+ ++|  +.++|.|+|+|-+=-|
T Consensus       199 ~G~~~GGg~a~~a~~~--D~via~~~A~i~v~Gp  230 (304)
T 2f9y_B          199 TDPTMGGVSASFAMLG--DLNIAEPKALIGFAGP  230 (304)
T ss_dssp             EEEEEHHHHTTGGGCC--SEEEECTTCBEESSCH
T ss_pred             ECCCccHHHHHHHhcC--CEEEEeCCcEEEeecH
Confidence            999999986664 567  4689999999887544

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=93.91  E-value=0.38  Score=41.67  Aligned_cols=92  Identities=12%  Similarity=0.165  Sum_probs=63.7

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEec-CCCCC-CCCccccHh----------------hHHHHHHHhhccCCCE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINS-TGTTK-GGEKLGYET----------------EAFAIYDVMGYVKPPI  172 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINS-pGg~~-~~~~~G~v~----------------aGlAIYDtm~~ik~~V  172 (258)
                      .++.++...+.+.|-.++.++..+-|-  |.+ .|+.. .|   +|+.                ....+++.|...+.||
T Consensus        23 al~~~~~~~l~~al~~~~~d~~vr~vV--ltg~~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv   97 (250)
T 2a7k_A           23 PFSRTLETSVKDALARANADDSVRAVV--VYGGAERSFSAG---GDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPT   97 (250)
T ss_dssp             BCCHHHHHHHHHHHHHHHHCTTCCEEE--EECCTTSCSBCB---SCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCcEEEE--EECCCCCCccCC---cCHHHHhhcCchhhHHHHHHHHHHHHHHHHcCCCCE
Confidence            367888888988888877654333332  233 33211 11   2321                1234566778889999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecC
Q 025057          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQA  209 (258)
Q Consensus       173 ~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP  209 (258)
                      ...+-|.|.+.|.-|.++++  -|++.++++|-+-..
T Consensus        98 IAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  132 (250)
T 2a7k_A           98 IAAVDGYAIGMGFQFALMFD--QRLMASTANFVMPEL  132 (250)
T ss_dssp             EEEECSEEETHHHHHHTTSS--EEEEETTCEEECCGG
T ss_pred             EEEECCeEeHHHHHHHHhCC--EEEEcCCCEEeCccc
Confidence            99999999999999999995  799999998876443

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=93.91  E-value=0.27  Score=42.66  Aligned_cols=90  Identities=13%  Similarity=0.039  Sum_probs=62.3

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhh------------------HHHHHHHhhccCCC
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE------------------AFAIYDVMGYVKPP  171 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~a------------------GlAIYDtm~~ik~~  171 (258)
                      -++.++...+.+.|-.++.++..+-|-|.=+  |... .|   +|+.+                  ...+++.|...+.|
T Consensus        22 al~~~~~~~L~~al~~~~~d~~vr~vVltg~--g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP   96 (253)
T 1uiy_A           22 PLSPEMALSLLQALDDLEADPGVRAVVLTGR--GKAFSAG---ADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKP   96 (253)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCTTCCEEEEEES--SSCSBCC---CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEECC--CCCcccC---cChHHHHhcccCCchhHHHHHHHHHHHHHHHHhCCCC
Confidence            3678888888888888876544443433332  2111 11   33311                  22345667778899


Q ss_pred             EEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       172 V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      |...+-|.|.+.|.-|+++++  .|++.++++|-+-
T Consensus        97 vIAav~G~a~GgG~~lal~cD--~~ia~~~a~f~~p  130 (253)
T 1uiy_A           97 TVAAVNGPAVAGGAGLALACD--LVVMDEEARLGYT  130 (253)
T ss_dssp             EEEEECSCEETHHHHHHHTSS--EEEEETTCEEECC
T ss_pred             EEEEECCeeeHHHHHHHHhCC--EEEEcCCcEEeCc
Confidence            999999999999999999995  7999999988663

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=93.60  E-value=0.35  Score=42.27  Aligned_cols=87  Identities=13%  Similarity=0.040  Sum_probs=62.5

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEe-----cCCCCCCCCccccHh---------------hHHHHHHHhhccCC
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYIN-----STGTTKGGEKLGYET---------------EAFAIYDVMGYVKP  170 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyIN-----SpGg~~~~~~~G~v~---------------aGlAIYDtm~~ik~  170 (258)
                      .++.++...+...|-.++.++..+-|-|.-+     |.|        +|+.               ....+++.|...+.
T Consensus        27 al~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG--------~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k   98 (260)
T 1sg4_A           27 SLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAG--------LDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNL   98 (260)
T ss_dssp             EECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCE--------ECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcC--------cCHHHHhccCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4788888888888887776544444444333     223        2221               12345677788889


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeec--CCceEeEe
Q 025057          171 PIFTLCVGNAWGEAALLLGAGAKGNRAAL--PSSTIMIK  207 (258)
Q Consensus       171 ~V~Ti~~G~AASmAslILaAG~kgkR~al--PnSriMIH  207 (258)
                      ||...+-|.|.+.|.-|+++++  .|++.  ++++|-+-
T Consensus        99 PvIAav~G~a~GgG~~lalacD--~~ia~~~~~a~f~~p  135 (260)
T 1sg4_A           99 VLVSAINGACPAGGCLVALTCD--YRILADNPRYCIGLN  135 (260)
T ss_dssp             EEEEEECEEBCHHHHHHHTTSS--EEEEECCTTCCBSCC
T ss_pred             CEEEEECCeeehHHHHHHHhCC--EEEEecCCCCEEeCc
Confidence            9999999999999999999994  69999  88887653

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=93.23  E-value=0.21  Score=49.08  Aligned_cols=101  Identities=15%  Similarity=0.168  Sum_probs=73.6

Q ss_pred             CceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHHHH
Q 025057          109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAAL  186 (258)
Q Consensus       109 gg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAsl  186 (258)
                      +|.++++.+.....-+ .+-. ...-||-..+|+||-..  .-|..|-.-++-.+++.+...+.|+.|+++|.++|.|.+
T Consensus       343 ~G~~~~~~~~Kaar~i-~~a~-~~~~Plv~lvDtpG~~~G~~~E~~g~~~~~A~~~~a~~~~~vP~isvI~g~~~gGg~~  420 (527)
T 1vrg_A          343 AGVLDIDSSDKAARFI-RFLD-AFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYI  420 (527)
T ss_dssp             GGCBCHHHHHHHHHHH-HHHH-HTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             CCCCCHHHHHHHHHHH-HHHh-hcCCCeEEEecCCCCcCchhhHHhHHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHH
Confidence            4678887766655433 3332 34689999999999542  113345666777788888889999999999999998887


Q ss_pred             HHccC--CCCCeeecCCceEeEecCCc
Q 025057          187 LLGAG--AKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       187 ILaAG--~kgkR~alPnSriMIHQP~~  211 (258)
                      -+++.  .....+|.|||++-+=.|.+
T Consensus       421 am~~~~~~~d~~~a~p~a~~~Vm~peg  447 (527)
T 1vrg_A          421 AMGSKHLGADMVLAWPSAEIAVMGPEG  447 (527)
T ss_dssp             HTTCGGGTCSEEEECTTCEEESSCHHH
T ss_pred             HhcCCCCCCCEEEEcCCCeEEecCHHH
Confidence            77651  12467999999998877765

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=92.95  E-value=0.42  Score=42.66  Aligned_cols=95  Identities=15%  Similarity=0.099  Sum_probs=63.9

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEe----cCCCCCCCCccccH----------hhHHHHHHHhhccCCCEEEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYIN----STGTTKGGEKLGYE----------TEAFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyIN----SpGg~~~~~~~G~v----------~aGlAIYDtm~~ik~~V~Ti~  176 (258)
                      -++.++...+...|-.++.++..+-|-|.=+    |.|+.- ++ +...          .....+++.|...+.||...+
T Consensus        56 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  133 (287)
T 2vx2_A           56 TLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDL-KE-LTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMV  133 (287)
T ss_dssp             CCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCC-C--CCGGGCHHHHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCH-HH-HhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            3778888999888887776443333333222    233211 01 1100          112356777888899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeEecC
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQA  209 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMIHQP  209 (258)
                      -|.|.+.|.-|+++++  -|++.++++|-+-..
T Consensus       134 ~G~a~GgG~~LalacD--~ria~~~a~f~~pe~  164 (287)
T 2vx2_A          134 NGLATAAGCQLVASCD--IAVASDKSSFATPGV  164 (287)
T ss_dssp             CSEEETHHHHHHHHSS--EEEEETTCEEECCGG
T ss_pred             CCEEEcHHHHHHHhCC--EEEEcCCCEEECchh
Confidence            9999999999999995  699999999876443

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=92.84  E-value=0.27  Score=48.41  Aligned_cols=100  Identities=15%  Similarity=0.176  Sum_probs=70.8

Q ss_pred             CceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHHHH
Q 025057          109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAAL  186 (258)
Q Consensus       109 gg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAsl  186 (258)
                      +|.++.+.+..... ++.|-.. ..-||-..+|+||-..  .-|.-|-+-.+-.+.+.+...+.|+.|+++|.+.|.|. 
T Consensus       345 ~G~l~~~~a~Kaar-fi~~c~~-~~iPlv~lvDtpGf~~G~~~E~~gi~~~~Ak~l~a~a~a~vP~itvI~g~~~GGa~-  421 (530)
T 3iav_A          345 AGCLDITASEKAAR-FVRTCDA-FNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAY-  421 (530)
T ss_dssp             GGCBCHHHHHHHHH-HHHHHHH-TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH-
T ss_pred             CCCCCHHHHHHHHH-HHHHHHh-cCCCEEEEeeCCCCCccHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEeCCcchHHH-
Confidence            47788877655443 4333332 3579999999999442  11223556667778889999999999999999999555 


Q ss_pred             HHccC---CCCCeeecCCceEeEecCCc
Q 025057          187 LLGAG---AKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       187 ILaAG---~kgkR~alPnSriMIHQP~~  211 (258)
                      +.++|   .....+|.||+++-+=.|.+
T Consensus       422 ~am~~~~~~~d~~~awp~a~~~Vm~~eg  449 (530)
T 3iav_A          422 VVMGSKHLGADLNLAWPTAQIAVMGAQG  449 (530)
T ss_dssp             HHTTCGGGTCSEEEECTTCEEESSCHHH
T ss_pred             HHhcCCCCCCCEEEEcCCceEecCCHHH
Confidence            55544   23578999999998877765

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=92.79  E-value=0.49  Score=41.73  Aligned_cols=92  Identities=16%  Similarity=0.116  Sum_probs=64.5

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCC-CC-CCCccccHh---------------hHHHHHHHhhccCCCEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-TK-GGEKLGYET---------------EAFAIYDVMGYVKPPIF  173 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg-~~-~~~~~G~v~---------------aGlAIYDtm~~ik~~V~  173 (258)
                      .++.++...+...|-.++.++..+-|-|.  +.|+ .. .|   +|+.               ....+++.|...+.||.
T Consensus        35 al~~~~~~~L~~al~~~~~d~~vr~vVlt--g~g~~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  109 (272)
T 1hzd_A           35 SLSKNLIKMLSKAVDALKSDKKVRTIIIR--SEVPGIFCAG---ADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTI  109 (272)
T ss_dssp             CBCTTHHHHHHHHHHHHHHCSSCSEEEEE--ESBTEEEECC---BCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCeEEEEEe--cCCCCCCcCC---CChhhhhccChHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            46788888888888887765444434333  3231 10 11   3332               12355677888899999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeEecC
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQA  209 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP  209 (258)
                      ..+-|.|.+.|.-|+++++  .|++.++++|-+-..
T Consensus       110 Aav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  143 (272)
T 1hzd_A          110 AAIDGLALGGGLELALACD--IRVAASSAKMGLVET  143 (272)
T ss_dssp             EEESEEEETHHHHHHHHSS--EEEEETTCEEECCGG
T ss_pred             EEeCceEEecHHHHHHhCC--EEEEcCCCEEeCchh
Confidence            9999999999999999994  799999999876544

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=92.76  E-value=0.43  Score=41.79  Aligned_cols=92  Identities=11%  Similarity=-0.026  Sum_probs=63.7

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhh--------------H-HHHHHHhhccCCCEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE--------------A-FAIYDVMGYVKPPIFT  174 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~a--------------G-lAIYDtm~~ik~~V~T  174 (258)
                      -++.++...+.+.|-.++.++..+-|-|.-+ .|... .|   +|+.+              . ..+++.|...+.||..
T Consensus        31 al~~~~~~~L~~al~~~~~d~~vr~vVltg~-~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  106 (265)
T 2ppy_A           31 SYDLEFYKEFNAAIDDIRFDPDIKVVIVMSD-VPKFFSAG---ADINFLRSADPRFKTQFCLFCNETLDKIARSPQVYIA  106 (265)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCEEEEEEC-STTEEECC---BCHHHHTTSCHHHHHHHHHHHHHHHHHHHHSSSEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCcEEEEEEcC-CCCeeeeC---cCHHHHhccchhHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            4678888888888888776544343433331 22110 11   33321              1 3567788888999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCc-eEeEec
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSS-TIMIKQ  208 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnS-riMIHQ  208 (258)
                      .+-|.|.+.|.-|+++++  .|++.+++ +|-+-.
T Consensus       107 av~G~a~GgG~~lalacD--~ria~~~ag~f~~pe  139 (265)
T 2ppy_A          107 CLEGHTVGGGLEMALACD--LRFMGDEAGKIGLPE  139 (265)
T ss_dssp             EECSEEETHHHHHHHTSS--EEEEETTCCCEECCG
T ss_pred             EECCEEeeHHHHHHHhCC--EEEEeCCCCEEECcc
Confidence            999999999999999994  69999999 876643

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=92.69  E-value=0.75  Score=39.85  Aligned_cols=86  Identities=19%  Similarity=0.140  Sum_probs=62.5

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEe----cCCCCCCCCccccHhhH----------HHHHHHhhccCCCEEEEEe
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYIN----STGTTKGGEKLGYETEA----------FAIYDVMGYVKPPIFTLCV  177 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyIN----SpGg~~~~~~~G~v~aG----------lAIYDtm~~ik~~V~Ti~~  177 (258)
                      ++.++...+.+.|..++.++..+-|-|.=+    |.|        +|+.+-          ..+++.|...+.||...+-
T Consensus        27 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG--------~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~   98 (243)
T 2q35_A           27 FSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSG--------ASKEFLIRKTRGEVEVLDLSGLILDCEIPIIAAMQ   98 (243)
T ss_dssp             SCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECB--------SCHHHHHHHHTTCCCCCCCHHHHHTCCSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCC--------CChHHHhhccchhhHHHHHHHHHHhCCCCEEEEEc
Confidence            678888888888888776543343333222    334        454332          1346678888999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       178 G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      |.|.+.|.-|.++++  .|++.++++|-+-
T Consensus        99 G~a~GgG~~lalacD--~ria~~~a~f~~p  126 (243)
T 2q35_A           99 GHSFGGGLLLGLYAD--FVVFSQESVYATN  126 (243)
T ss_dssp             SEEETHHHHHHHTSS--EEEEESSSEEECC
T ss_pred             CccccchHHHHHhCC--EEEEeCCCEEECC
Confidence            999999999999994  6999999987653

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=92.56  E-value=0.28  Score=48.41  Aligned_cols=101  Identities=16%  Similarity=0.177  Sum_probs=73.4

Q ss_pred             CceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHHHH
Q 025057          109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAAL  186 (258)
Q Consensus       109 gg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAsl  186 (258)
                      +|.++.+.+.... +++.|-.. ..-||-..+|.||-..  .-|.-|-+-.+-.+.+.+...+.|+.|+++|.++|.|.+
T Consensus       351 ~G~l~~~~a~Kaa-rfi~lcd~-~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~  428 (531)
T 3n6r_B          351 AGCLDIDSSRKAA-RFVRFCDA-FEIPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYV  428 (531)
T ss_dssp             GGCBCHHHHHHHH-HHHHHHHH-TTCCEEEEEEECSBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             CCCCCHHHHHHHH-HHHHHhhc-cCCCEEEEeCCCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEcCCccchhhh
Confidence            3678887765544 34444332 3579999999999442  112235567778888999999999999999999999887


Q ss_pred             HHcc--CCCCCeeecCCceEeEecCCc
Q 025057          187 LLGA--GAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       187 ILaA--G~kgkR~alPnSriMIHQP~~  211 (258)
                      .+++  -.....+|.||+++-+=.|.+
T Consensus       429 am~~~~~~~d~~~awp~A~i~Vm~peg  455 (531)
T 3n6r_B          429 VMSSKHLRADFNYAWPTAEVAVMGAKG  455 (531)
T ss_dssp             HTTCGGGTCSEEEECTTCEEESSCHHH
T ss_pred             hccCccCCCCeEEEcCCceEecCCHHH
Confidence            7775  123567999999998877765

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=92.48  E-value=0.74  Score=40.40  Aligned_cols=91  Identities=12%  Similarity=0.150  Sum_probs=62.3

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhh--------------------------HHHHHH
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE--------------------------AFAIYD  163 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~a--------------------------GlAIYD  163 (258)
                      -++.++...+...|-.++.++..+-|  .|-+-|... .|   +|+.+                          ...+++
T Consensus        27 al~~~~~~~L~~al~~~~~d~~vr~v--Vltg~g~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (275)
T 1dci_A           27 AMNRAFWRELVECFQKISKDSDCRAV--VVSGAGKMFTSG---IDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFT  101 (275)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCEE--EEEESTTCSBCC---BCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEE--EEECCCCCccCC---cChHHHhhcccccccchhhhhhHHHHHHHHHHHHHHH
Confidence            36888888888888877754433322  233323221 12   33311                          123456


Q ss_pred             HhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          164 VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       164 tm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      .|...+.||...+-|.|.+.|.-|+++++  -|++.++++|-+-.
T Consensus       102 ~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe  144 (275)
T 1dci_A          102 VIEKCPKPVIAAIHGGCIGGGVDLISACD--IRYCTQDAFFQVKE  144 (275)
T ss_dssp             HHHHSSSCEEEEECSEEETHHHHHHTTSS--EEEEETTCEEECCG
T ss_pred             HHHhCCCCEEEEECCeeeHHHHHHHHhCC--EEEEeCCCEEeCcc
Confidence            67788999999999999999999999995  69999999887644

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=92.31  E-value=0.26  Score=48.33  Aligned_cols=102  Identities=15%  Similarity=0.175  Sum_probs=74.1

Q ss_pred             eCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHHH
Q 025057          108 LGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA  185 (258)
Q Consensus       108 Lgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAs  185 (258)
                      .+|.++.+.+..... ++.+- +...-||-..+|.||-..  .-|.-|-+-++-.+.+.+...+.|+.|+++|.++|.|.
T Consensus       338 ~~G~~~~~~a~Kaar-~i~~~-~~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~~A~~l~a~a~~~vP~itvI~g~~~Ggg~  415 (523)
T 1on3_A          338 MSGCLDINASDKAAE-FVNFC-DSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSY  415 (523)
T ss_dssp             GGGCBCHHHHHHHHH-HHHHH-HHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH
T ss_pred             cCCCCCHHHHHHHHH-HHHHH-HhcCCCeEEEEeCCCcCcchHHHHhhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHH
Confidence            346788877665554 33332 234689999999999443  11233666777888888999999999999999999888


Q ss_pred             HHHccC--CCCCeeecCCceEeEecCCc
Q 025057          186 LLLGAG--AKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       186 lILaAG--~kgkR~alPnSriMIHQP~~  211 (258)
                      +.+++.  .....+|.||+++-+=.|.+
T Consensus       416 ~am~~~~~~~d~~~a~p~a~~~Vm~peg  443 (523)
T 1on3_A          416 LAMCNRDLGADAVYAWPSAEIAVMGAEG  443 (523)
T ss_dssp             HTTTCGGGTCSEEEECTTCEEESSCHHH
T ss_pred             HHhcccCCCCCEEEEcCCCeEEecCHHH
Confidence            777661  12467999999998877765

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=92.21  E-value=0.79  Score=40.40  Aligned_cols=93  Identities=14%  Similarity=0.162  Sum_probs=63.5

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecC-----CCCCCCCcccc--------H--hhHHHHHHHhhccCCCEEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINST-----GTTKGGEKLGY--------E--TEAFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSp-----Gg~~~~~~~G~--------v--~aGlAIYDtm~~ik~~V~Ti~  176 (258)
                      ++.++...+.+.|..++.++..+-|-|.=+.+     |+.-. + +..        +  .....+++.|...+.||...+
T Consensus        37 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  114 (273)
T 2uzf_A           37 FTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQK-K-RGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMV  114 (273)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC----------CCSSSCCCTHHHHHHHHHHSSSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcH-h-hhccccchhhhHHHhhHHHHHHHHHhCCCCEEEEE
Confidence            77888888888888887654444444433222     32110 0 000        0  012356778888999999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      -|.|.+.|.-|+++++  .|++.++++|-+..
T Consensus       115 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe  144 (273)
T 2uzf_A          115 KGYAVGGGNVLNVVCD--LTIAADNAIFGQTG  144 (273)
T ss_dssp             CEEEETHHHHHHHHSS--EEEEETTCEEECCG
T ss_pred             CCEEeehhHHHHHhCC--EEEEcCCCEEECch
Confidence            9999999999999994  69999999877644

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=92.20  E-value=0.42  Score=46.83  Aligned_cols=100  Identities=14%  Similarity=0.162  Sum_probs=74.1

Q ss_pred             eCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHHH
Q 025057          108 LGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA  185 (258)
Q Consensus       108 Lgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAs  185 (258)
                      .+|.++.+.++.+..-+. +.. ...-||-..+||||-..  .-|.-|-+.++--+.+.+...+.|+.|+.+|-++|.|+
T Consensus       337 ~gG~l~~~~~~K~ar~i~-~a~-~~~~Plv~l~ds~G~~~G~~~E~~G~~~~~Ak~l~~~~~~~vP~Isvi~g~~~GGg~  414 (522)
T 1x0u_A          337 FGGSIDIDAADKAARFIR-FCD-AFNIPLISLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAH  414 (522)
T ss_dssp             GGGCBCHHHHHHHHHHHH-HHH-HTTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH
T ss_pred             cCCCcCHHHHHHHHHHHH-HHh-hCCCCEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcccHHH
Confidence            457788888887775443 332 23679999999999221  11112445666777888888899999999999999999


Q ss_pred             HHHcc----CCCCCeeecCCceEeEecCCc
Q 025057          186 LLLGA----GAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       186 lILaA----G~kgkR~alPnSriMIHQP~~  211 (258)
                      +.+++    +  +..+|.|+|++-+=.|.+
T Consensus       415 ~~~a~~a~~~--D~v~a~p~A~i~v~gpeg  442 (522)
T 1x0u_A          415 IAMSIKSLGA--DLVYAWPTAEIAVTGPEG  442 (522)
T ss_dssp             HHTCCGGGTC--SEEEECTTCEEESSCHHH
T ss_pred             HHhcccccCC--CEEEEeCCCEEEecCHHH
Confidence            88877    5  457899999998877774

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=91.92  E-value=0.23  Score=49.46  Aligned_cols=107  Identities=15%  Similarity=0.115  Sum_probs=78.1

Q ss_pred             CcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeee
Q 025057          103 NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNA  180 (258)
Q Consensus       103 eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~A  180 (258)
                      +++...+|.++.+.+..... ++.+-. ..+-||-.++|.||-..  .-|.-|-.-.|-.+.+.+...+.|+.||++|-+
T Consensus       378 ~~~~~~~G~l~~~~a~Kaar-fi~~c~-~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gA~~~~a~a~a~vP~itvI~g~~  455 (587)
T 1pix_A          378 AGSVGIGGKLYRQGLVKMNE-FVTLCA-RDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKG  455 (587)
T ss_dssp             TTCCEETTEECHHHHHHHHH-HHHHHH-HTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEE
T ss_pred             ccccccCCCcCHHHHHHHHH-HHHHhh-cCCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            35667889999987665543 333322 34679999999999432  112235566778888999999999999999999


Q ss_pred             hhHHHHHHccCC--C--CCeeecCCceEeEecCCc
Q 025057          181 WGEAALLLGAGA--K--GNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       181 ASmAslILaAG~--k--gkR~alPnSriMIHQP~~  211 (258)
                      .|.|.+.+++..  .  ...+|.||+++-+=.|.+
T Consensus       456 ~Ggg~~am~~~~~~~~~d~~~a~p~A~~~Vm~peg  490 (587)
T 1pix_A          456 TAAAHYVLGGPQGNDTNAFSIGTAATEIAVMNGET  490 (587)
T ss_dssp             ETTHHHHTTCTTCTTTEEEEEECTTCEEESSCHHH
T ss_pred             ccHHHHHhcCcccCcccceeeeccCCeEecCCHHH
Confidence            999988777521  1  346899999998876665

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=91.67  E-value=0.39  Score=42.20  Aligned_cols=90  Identities=14%  Similarity=0.100  Sum_probs=62.6

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhh-------------HHHHHHHhhccCCCEEEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE-------------AFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~a-------------GlAIYDtm~~ik~~V~Ti~  176 (258)
                      .++.++...+.+.|-.++.++..+-|  .|-+.|... .|   +|+.+             ...+++.|...+.||...+
T Consensus        33 al~~~~~~~l~~al~~~~~d~~vr~v--Vltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  107 (263)
T 3moy_A           33 ALNQTLEAEVLDAARDFDADLEIGAI--VVTGSERAFAAG---ADIAEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAV  107 (263)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEE--EEECCSSEEEES---BCHHHHTTCCHHHHHHTTTTHHHHHHTTCCSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEE--EEECCCCCeeCC---cChHHHhccCchhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            36788888888888877764433322  233322111 11   33322             1246788889999999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      -|.|.+.|.-|+++++  -|++.++++|-+-
T Consensus       108 ~G~a~GgG~~lalacD--~~ia~~~a~f~~p  136 (263)
T 3moy_A          108 AGYALGGGCELAMLCD--LVIAADTARFGQP  136 (263)
T ss_dssp             CBEEETHHHHHHHHSS--EEEEETTCEEECG
T ss_pred             CCEeehHHHHHHHHCC--EEEecCCCEEeCc
Confidence            9999999999999995  6999999987754

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=91.19  E-value=1.1  Score=39.30  Aligned_cols=93  Identities=13%  Similarity=0.119  Sum_probs=63.0

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CC-Cc--cccH----------hhHHHHHHHhhccCCCEEEEEe
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GG-EK--LGYE----------TEAFAIYDVMGYVKPPIFTLCV  177 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~-~~--~G~v----------~aGlAIYDtm~~ik~~V~Ti~~  177 (258)
                      ++.++...+...|..++.++..+-|  .|-+.|... .| .+  +...          .....+++.|...+.||...+-
T Consensus        29 l~~~~~~~L~~al~~~~~d~~vr~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  106 (261)
T 3pea_A           29 MSSQVMHDVTELIDQVEKDDNIRVV--VIHGEGRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIH  106 (261)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEE--EEEESTTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEE--EEECCCCceeCCcCHHHHhhcCchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            7788888888888877764433332  233333221 11 11  0000          0123467788899999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       178 G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      |.|.+.|.-|+++++  -|++.++++|-+-.
T Consensus       107 G~a~GgG~~lalacD--~ria~~~a~f~~pe  135 (261)
T 3pea_A          107 GAALGGGLEFAMSCH--MRFATESAKLGLPE  135 (261)
T ss_dssp             SEEETHHHHHHHHSS--EEEEETTCEEECCG
T ss_pred             CeeehHHHHHHHhCC--EEEEcCCCEEECcc
Confidence            999999999999994  69999999977543

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=91.09  E-value=1  Score=39.43  Aligned_cols=93  Identities=12%  Similarity=0.066  Sum_probs=61.6

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEe----cCCCCCCCCccccH-----h-h--------HHHHHHHhhccCCCE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYIN----STGTTKGGEKLGYE-----T-E--------AFAIYDVMGYVKPPI  172 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyIN----SpGg~~~~~~~G~v-----~-a--------GlAIYDtm~~ik~~V  172 (258)
                      -++.++...+...|-.++.++..+-|-|.=+    |.|+.- ++ +...     . +        ...+++.|...+.||
T Consensus        26 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv  103 (269)
T 1nzy_A           26 ALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYL-RE-IPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPV  103 (269)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCG-GG-SCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCH-HH-HhhcccccChHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            3678888888888887776543333333222    233110 00 1100     0 1        234556777889999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       173 ~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      ...+-|.|.+.|.-|+++++  -|++.++++|-+-
T Consensus       104 IAav~G~a~GgG~~lal~cD--~ria~~~a~f~~p  136 (269)
T 1nzy_A          104 LAAINGVAAGGGLGISLASD--MAICADSAKFVCA  136 (269)
T ss_dssp             EEEECSEEETHHHHHHHHSS--EEEEETTCEEECC
T ss_pred             EEEECCeeecHHHHHHHhCC--EEEecCCCEEeCc
Confidence            99999999999999999994  6999999988653

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=91.05  E-value=0.87  Score=39.70  Aligned_cols=91  Identities=18%  Similarity=0.293  Sum_probs=61.7

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEec-CC-CCC-CC-Cc--cc--------cHhhHHHHHHHhhccCCCEEEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINS-TG-TTK-GG-EK--LG--------YETEAFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINS-pG-g~~-~~-~~--~G--------~v~aGlAIYDtm~~ik~~V~Ti~  176 (258)
                      -++.++...+...|..++.++ .+-|  .|.+ .| ... .| .+  +.        .......+++.|...+.||...+
T Consensus        27 al~~~~~~~L~~al~~~~~d~-vr~v--Vltg~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  103 (261)
T 1ef8_A           27 ALSKVFIDDLMQALSDLNRPE-IRCI--ILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMV  103 (261)
T ss_dssp             CCCHHHHHHHHHHHHHTCSTT-CCEE--EEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhhCC-ceEE--EEECCCCCCeeecCcChHhhhccCchhHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            467788888888888777544 3333  3333 23 110 11 11  00        01123466778888999999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      -|.|.+.|.-|+++++  .|++.++++|-+
T Consensus       104 ~G~a~GgG~~lalacD--~ria~~~a~f~~  131 (261)
T 1ef8_A          104 EGSVWGGAFEMIMSSD--LIIAASTSTFSM  131 (261)
T ss_dssp             CSEEETHHHHHHHHSS--EEEEETTCEEEC
T ss_pred             CCEEEeHhHHHHHhCC--EEEecCCCEEeC
Confidence            9999999999999995  699999998765

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=90.78  E-value=0.33  Score=42.46  Aligned_cols=89  Identities=15%  Similarity=0.097  Sum_probs=62.3

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEe----cCCCCCCCCccccHhhH-------------HHHHHHhhccCCCEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYIN----STGTTKGGEKLGYETEA-------------FAIYDVMGYVKPPIF  173 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyIN----SpGg~~~~~~~G~v~aG-------------lAIYDtm~~ik~~V~  173 (258)
                      -++.++...+...|-.++.++..+-|-|.=+    |.|        +|+.+-             ...++.|...+.||.
T Consensus        30 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG--------~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  101 (260)
T 1mj3_A           30 ALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAG--------ADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVI  101 (260)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECC--------BCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCC--------cChHhhhcccchHHHHHHHHHHHHHHHhCCCCEE
Confidence            3788888999988888876543343333222    233        343220             112456677788999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeEecC
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQA  209 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP  209 (258)
                      ..+-|.|.+.|.-|+++++  .|++.++++|-+...
T Consensus       102 Aav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  135 (260)
T 1mj3_A          102 AAVNGYALGGGCELAMMCD--IIYAGEKAQFGQPEI  135 (260)
T ss_dssp             EEECSEEETHHHHHHHHSS--EEEEETTCEEECGGG
T ss_pred             EEECCEEEeHHHHHHHhCC--EEEEcCCCEEeCccc
Confidence            9999999999999999994  699999999876543

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=90.65  E-value=1.4  Score=38.54  Aligned_cols=90  Identities=14%  Similarity=0.052  Sum_probs=62.1

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHh-----------------hHHHHHHHhhccCCCE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET-----------------EAFAIYDVMGYVKPPI  172 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~-----------------aGlAIYDtm~~ik~~V  172 (258)
                      -++.++...+.+.|..++.++..+-|-|.  +-|... .|   +|+.                 ....+++.|...+.||
T Consensus        33 al~~~~~~~L~~al~~~~~d~~vr~vVlt--g~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv  107 (264)
T 1wz8_A           33 AMPPALHRGLARVWRDLEAVEGVRAVLLR--GEGGVFSAG---GSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPV  107 (264)
T ss_dssp             CBCHHHHHHHHHHHHHHTTCTTCSEEEEE--EGGGCCBCC---BCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCE
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCeeEEEEE--CCCCCCccc---CccccccccccchHHHHHHHHHHHHHHHHHHcCCCCE
Confidence            37888888898888888765433433333  222111 11   3331                 1124456677888999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       173 ~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      ...+-|.|.+.|.-|+++++  -|++.++++|-+-
T Consensus       108 IAav~G~a~GgG~~lalacD--~ria~~~a~f~~p  140 (264)
T 1wz8_A          108 VAAVEKVAVGAGLALALAAD--IAVVGKGTRLLDG  140 (264)
T ss_dssp             EEEECSEEETHHHHHHHHSS--EEEEETTCEEECC
T ss_pred             EEEECCeeechhHHHHHhCC--EEEecCCCEEeCc
Confidence            99999999999999999994  7999999987763

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=90.57  E-value=0.83  Score=39.72  Aligned_cols=92  Identities=11%  Similarity=0.094  Sum_probs=64.4

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHh----------------hHHHHHHHhhccCCCEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET----------------EAFAIYDVMGYVKPPIF  173 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~----------------aGlAIYDtm~~ik~~V~  173 (258)
                      .++.++...+.+.|-.++.++..+-|-  |.+.|... .|   +|+.                ....++..|...+.||.
T Consensus        29 al~~~~~~~L~~al~~~~~d~~vr~vV--ltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  103 (256)
T 3qmj_A           29 AFNEALYDATAQALLDAADDPQVAVVL--LTGSGRGFSAG---TDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLI  103 (256)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEE--EEESTTEEECC---BCHHHHHHHHHSSSCCCCSSHHHHHHHHHHHCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEE--EECCCCCcccC---cCHHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence            477888888888888887654333332  23333111 11   2322                22456778888999999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeEecC
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQA  209 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP  209 (258)
                      ..+-|.|.+.|.-|+++++  -|++.++++|-+...
T Consensus       104 Aav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~  137 (256)
T 3qmj_A          104 CAVNGLGVGIGATILGYAD--LAFMSSTARLKCPFT  137 (256)
T ss_dssp             EEECSEEETHHHHGGGGCS--EEEEETTCEEECCGG
T ss_pred             EEECCeehhHHHHHHHhCC--EEEEeCCCEEECccc
Confidence            9999999999999999994  699999998876443

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=90.43  E-value=1  Score=39.83  Aligned_cols=90  Identities=14%  Similarity=0.161  Sum_probs=61.1

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CC-Ccc------ccHhhHHHHHHHhhccCCCEEEEEeeeehhH
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GG-EKL------GYETEAFAIYDVMGYVKPPIFTLCVGNAWGE  183 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~-~~~------G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASm  183 (258)
                      ++.++...+...|-.++.+ ..+-  +.|-+.|... .| .+-      ........++..|...+.||...+-|.|.+.
T Consensus        45 l~~~~~~~L~~al~~~~~d-~vr~--vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  121 (264)
T 3he2_A           45 LNSQLVEELTQAIRKAGDG-SARA--IVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAINGPAIGA  121 (264)
T ss_dssp             BCHHHHHHHHHHHHCC----CCSE--EEEEESSSCSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCEEEEECSCEETH
T ss_pred             CCHHHHHHHHHHHHHHhhC-CceE--EEEECCCCCccCCcCCccchhhHHHHHHHHHHHHHHHhCCCCEEEEECCcEEcc
Confidence            6788888898888877643 2232  2333333221 11 110      0122345677888889999999999999999


Q ss_pred             HHHHHccCCCCCeeecCCceEeE
Q 025057          184 AALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       184 AslILaAG~kgkR~alPnSriMI  206 (258)
                      |.-|+++++  -|++.++++|-+
T Consensus       122 G~~lalacD--~ria~~~a~f~~  142 (264)
T 3he2_A          122 GLQLAMQCD--LRVVAPDAFFQF  142 (264)
T ss_dssp             HHHHHHHSS--EEEECTTCEEEC
T ss_pred             hhHHHHhCC--EEEEcCCCEEEC
Confidence            999999994  699999998765

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=90.24  E-value=1.3  Score=38.86  Aligned_cols=90  Identities=11%  Similarity=0.045  Sum_probs=64.4

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH-----------------hhHHHHHHHhhccCCCEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE-----------------TEAFAIYDVMGYVKPPIF  173 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v-----------------~aGlAIYDtm~~ik~~V~  173 (258)
                      ++.++...+.+.|..++.++..+-  +.|.+.|... .|   +|+                 .....++..|...+.||.
T Consensus        29 l~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  103 (266)
T 3fdu_A           29 LYGELYLWIAKALDEADQNKDVRV--VVLRGAEHDFTAG---NDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLI  103 (266)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCE--EEEEESSSCSBCC---BCHHHHHHHHHSCCCSCGGGSHHHHHHHHHHHCCSCEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEE--EEEECCCCCeECC---cCHHHHhhhccccchhhHHHHHHHHHHHHHHhCCCCEE
Confidence            678888888888888776543333  2334434221 22   122                 123456778889999999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      ..+-|.|.+.|.-|+++++  -|++.++++|-+-.
T Consensus       104 Aav~G~a~GgG~~lalacD--~ria~~~a~f~~pe  136 (266)
T 3fdu_A          104 IAVKGVAIGIGVTILLQAD--LVFADNTALFQIPF  136 (266)
T ss_dssp             EEECSEEETHHHHGGGGCS--EEEECTTCEEECCT
T ss_pred             EEECCEEehHHHHHHHhCC--EEEEcCCCEEECch
Confidence            9999999999999999994  69999999987644

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=89.93  E-value=0.66  Score=40.49  Aligned_cols=91  Identities=15%  Similarity=0.136  Sum_probs=64.9

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH---------hhHHHHHHHhhccCCCEEEEEeeee
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE---------TEAFAIYDVMGYVKPPIFTLCVGNA  180 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v---------~aGlAIYDtm~~ik~~V~Ti~~G~A  180 (258)
                      .++.++...+...|-.++.++..+-  +.|.+.|... .|   +|+         .....++..|...+.||...+-|.|
T Consensus        29 al~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  103 (255)
T 3p5m_A           29 AVDTPMLEELSVHIRDAEADESVRA--VLLTGAGRAFCSG---GDLTGGDTAGAADAANRVVRAITSLPKPVIAGVHGAA  103 (255)
T ss_dssp             EECHHHHHHHHHHHHHHHHCTTCCE--EEEEESSSCSBCE---ECC---CHHHHHHHHHHHHHHHHHCSSCEEEEECSEE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCeEE--EEEECCCCCccCC---CChhhhcchHHHHHHHHHHHHHHhCCCCEEEEeCCee
Confidence            3788888899988888876443333  2334444221 12   222         1234678888999999999999999


Q ss_pred             hhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          181 WGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       181 ASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      .+.|.-|+++++  -|++.++++|-+-.
T Consensus       104 ~GgG~~lalacD--~~ia~~~a~f~~pe  129 (255)
T 3p5m_A          104 VGFGCSLALACD--LVVAAPASYFQLAF  129 (255)
T ss_dssp             ETHHHHHHHHSS--EEEECTTCEEECGG
T ss_pred             hhhHHHHHHHCC--EEEEcCCcEEeCcc
Confidence            999999999994  69999999876643

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=89.72  E-value=1.7  Score=38.03  Aligned_cols=91  Identities=15%  Similarity=0.143  Sum_probs=63.5

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCC-CCC-CCCccccHh---------------hHHHHHHHhhccCCCEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TTK-GGEKLGYET---------------EAFAIYDVMGYVKPPIF  173 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpG-g~~-~~~~~G~v~---------------aGlAIYDtm~~ik~~V~  173 (258)
                      -++.++...+...|-.++.++..+-  +.|.+.| +.. .|   +|+.               ....+++.|...+.||.
T Consensus        32 al~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  106 (265)
T 3kqf_A           32 SLSLALLEELQNILTQINEEANTRV--VILTGAGEKAFCAG---ADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVI  106 (265)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCE--EEEEESSSSEEECC---BCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCceE--EEEecCCCCeeeeC---cChHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            3677888888888887775433332  2233333 111 22   2321               23456777888999999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      ..+-|.|.+.|.-|++++  +-|++.++++|-+-.
T Consensus       107 Aav~G~a~GgG~~lalac--D~ria~~~a~f~~pe  139 (265)
T 3kqf_A          107 AAINGIALGGGTELSLAC--DFRIAAESASLGLTE  139 (265)
T ss_dssp             EEECSEEETHHHHHHHHS--SEEEEETTCEEECCG
T ss_pred             EEECCeeehHHHHHHHhC--CEEEEcCCcEEECcc
Confidence            999999999999999999  469999999987644

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=89.66  E-value=1  Score=39.84  Aligned_cols=92  Identities=12%  Similarity=0.138  Sum_probs=62.6

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEec-----CCC-CC-CCCccccH-------------hhHHHHHHHhhccCC
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINS-----TGT-TK-GGEKLGYE-------------TEAFAIYDVMGYVKP  170 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINS-----pGg-~~-~~~~~G~v-------------~aGlAIYDtm~~ik~  170 (258)
                      -++.++...+...|-.++.++..+-|-  |-+     -|+ .. .|-.+...             .....+++.|...+.
T Consensus        33 al~~~~~~~L~~al~~~~~d~~vr~vV--ltg~~~~~~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  110 (275)
T 4eml_A           33 AFRPQTVFELYDAFCNAREDNRIGVVL--LTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPK  110 (275)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEE--EEECCCCTTSCCEEECCBCCC--------------CCCHHHHHHHHHHSSS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEE--EeCCCcCcCCCCceeCCcChhhhhcccccchhhHHHHHHHHHHHHHHhCCC
Confidence            467888888888888777644333322  333     231 11 11111111             113456778889999


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       171 ~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      ||...+-|.|.+.|.-|+++++  -|++.++++|-+
T Consensus       111 PvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~  144 (275)
T 4eml_A          111 VVIALVAGYAIGGGHVLHLVCD--LTIAADNAIFGQ  144 (275)
T ss_dssp             EEEEEECSEEETHHHHHHHHSS--EEEEETTCEEEC
T ss_pred             CEEEEECCeeehHHHHHHHhCC--EEEEcCCCEEEC
Confidence            9999999999999999999994  699999999876

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=89.63  E-value=1.2  Score=39.52  Aligned_cols=93  Identities=16%  Similarity=0.105  Sum_probs=62.5

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH----------------hhHHHHHHHhhccCCCEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE----------------TEAFAIYDVMGYVKPPIF  173 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v----------------~aGlAIYDtm~~ik~~V~  173 (258)
                      -++.++...+.+.|-.++.++ +  +-+.|-+-|... .|-.+...                .....++..|...+.||.
T Consensus        49 al~~~~~~~L~~al~~~~~d~-~--v~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  125 (280)
T 2f6q_A           49 AINTEMYHEIMRALKAASKDD-S--IITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLI  125 (280)
T ss_dssp             CBCHHHHHHHHHHHHHHHHSS-C--SEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHHhhCC-C--EEEEEeCCCCCcccCCCHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence            367888888888888776543 2  245555433221 11111110                011245677888899999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      ..+-|.|.+.|.-|+++++  .|++.++++|-+-.
T Consensus       126 Aav~G~a~GgG~~LalacD--~ria~~~a~f~~pe  158 (280)
T 2f6q_A          126 AVVNGPAVGISVTLLGLFD--AVYASDRATFHTPF  158 (280)
T ss_dssp             EEECSCEETHHHHGGGGCS--EEEEETTCEEECCT
T ss_pred             EEECCeeehHHHHHHHhCC--EEEECCCcEEECch
Confidence            9999999999999999995  69999999877643

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=89.33  E-value=1.3  Score=39.50  Aligned_cols=93  Identities=14%  Similarity=0.210  Sum_probs=63.1

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCC-CC-CC-Cc--ccc-----------HhhHHHHHHHhhccCCCEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-TK-GG-EK--LGY-----------ETEAFAIYDVMGYVKPPIFT  174 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg-~~-~~-~~--~G~-----------v~aGlAIYDtm~~ik~~V~T  174 (258)
                      -++.++...+...|-.++.++..+-|-  |-+.|+ .. .| .+  ++.           ......++..|...+.||..
T Consensus        51 al~~~~~~~L~~al~~~~~d~~vr~vV--ltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  128 (289)
T 3t89_A           51 AFRPLTVKEMIQALADARYDDNIGVII--LTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVA  128 (289)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEE--EEESSSSEEECCBCCC----------------CTHHHHHHHHHHCSSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEE--EEcCCCCCccCCCChhhhhccccchhhhHHHHHHHHHHHHHHHcCCCCEEE
Confidence            367888888888888777654333333  333331 11 11 11  110           01234577788899999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      .+-|.|.+.|.-|+++++  -|++.++++|-+-
T Consensus       129 aV~G~a~GgG~~lalacD--~ria~~~a~f~~p  159 (289)
T 3t89_A          129 MVAGYSIGGGHVLHMMCD--LTIAADNAIFGQT  159 (289)
T ss_dssp             EECSEEETHHHHHHHHSS--EEEEETTCEEECC
T ss_pred             EECCEeehHHHHHHHhCC--EEEEeCCCEEecc
Confidence            999999999999999994  6999999998763

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=89.14  E-value=1.1  Score=39.82  Aligned_cols=90  Identities=17%  Similarity=0.079  Sum_probs=63.5

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhh---------------HHHHHHHhhccCCCEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE---------------AFAIYDVMGYVKPPIFTL  175 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~a---------------GlAIYDtm~~ik~~V~Ti  175 (258)
                      ++.++...+...|..++.++..+-  +.|.+.|... .|   +|+.+               ...++..|...+.||...
T Consensus        47 l~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  121 (277)
T 4di1_A           47 MTRQVYREIVAAADELGRRDDIGA--VVLFGGHEIFSAG---DDMPELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAA  121 (277)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCE--EEEECCSSCSBCC---BCHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEE--EEEECCCCCEecC---cCcccccccChHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            788888888888887776443332  2233334221 22   23221               235677788899999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       176 ~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      +-|.|.+.|.-|+++++  -|++.++++|-+-.
T Consensus       122 v~G~a~GgG~~LalacD--~ria~~~a~f~~pe  152 (277)
T 4di1_A          122 VTGYALGAGLTLALAAD--WRVSGDNVKFGATE  152 (277)
T ss_dssp             ECSEEETHHHHHHHHSS--EEEEETTCEEECGG
T ss_pred             ECCeEehhHHHHHHhCC--EEEEcCCCEEECcc
Confidence            99999999999999994  69999999987643

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=89.02  E-value=1.2  Score=39.49  Aligned_cols=88  Identities=14%  Similarity=0.075  Sum_probs=62.5

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHh-----------------hHHHHHHHhhccCCCEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET-----------------EAFAIYDVMGYVKPPIF  173 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~-----------------aGlAIYDtm~~ik~~V~  173 (258)
                      ++.++...+.+.|-.++.++..+-  +.|-+.|... .|   +|+.                 ....++..|...+.||.
T Consensus        52 l~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  126 (276)
T 3rrv_A           52 VNDDLHVGLARLWQRLTDDPTARA--AVITGAGRAFSAG---GDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVV  126 (276)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCE--EEEEESTTCSBCC---BCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceE--EEEECCCCcccCC---cCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            678888899988888876543332  2333434221 22   2322                 12346677888999999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      ..+-|.|.+.|.-|+++++  -|++.++++|-+
T Consensus       127 Aav~G~a~GgG~~LalacD--~ria~~~a~f~~  157 (276)
T 3rrv_A          127 AAVNGPAVGLGCSLVALSD--IVYIAENAYLAD  157 (276)
T ss_dssp             EEECSCEETHHHHHHHTSS--EEEEETTCEEEC
T ss_pred             EEECceeeHHHHHHHHHCC--EEEEeCCCEEEC
Confidence            9999999999999999995  699999998764

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=88.96  E-value=1.5  Score=38.15  Aligned_cols=90  Identities=18%  Similarity=0.080  Sum_probs=62.4

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhh-------------------HHHHHHHhhccCC
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE-------------------AFAIYDVMGYVKP  170 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~a-------------------GlAIYDtm~~ik~  170 (258)
                      -++.++...+...|-.++.++ .+-  +.|-+.|... .|   +|+.+                   ...+++.|...+.
T Consensus        29 al~~~~~~~L~~al~~~~~d~-~r~--vvltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  102 (261)
T 2gtr_A           29 SLNPEVMREVQSALSTAAADD-SKL--VLLSAVGSVFCCG---LDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKK  102 (261)
T ss_dssp             EECHHHHHHHHHHHHHHHHSS-CSC--EEEEESSSCSBCE---ECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHHHHHHHHHHHhcCC-CEE--EEEecCCCccccc---cCchhhhhccccchhhHHHHHHHHHHHHHHHHHhCCC
Confidence            467888888888888777643 333  3344333221 12   23321                   1234566778889


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       171 ~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      ||...+-|.|.+.|.-|+++++  -|++.++++|-+-.
T Consensus       103 PvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe  138 (261)
T 2gtr_A          103 PIIVAVNGPAIGLGASILPLCD--VVWANEKAWFQTPY  138 (261)
T ss_dssp             CEEEEECSCEETHHHHTGGGSS--EEEEETTCEEECCT
T ss_pred             CEEEEECCeEeeHHHHHHHhCC--EEEEcCCCEEeCch
Confidence            9999999999999999999995  69999999887644

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=88.90  E-value=1.2  Score=40.44  Aligned_cols=92  Identities=14%  Similarity=0.079  Sum_probs=62.6

Q ss_pred             EeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHH-------HHHHhh---ccCCCEEEEE
Q 025057          107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFA-------IYDVMG---YVKPPIFTLC  176 (258)
Q Consensus       107 fLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlA-------IYDtm~---~ik~~V~Ti~  176 (258)
                      |++|.+..+.++.+.. +..+..+. .-|+-.+++|+|        ..+-+|+.       |...+.   ...-|+.++.
T Consensus       132 ~~gGs~g~~~~~K~~r-~ie~A~~~-~lPlI~l~dsgG--------ar~qEGi~sl~q~aki~~~l~~~s~~~vP~Isvv  201 (285)
T 2f9i_B          132 FRMGSMGSVIGEKICR-IIDYCTEN-RLPFILFSASGG--------ARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYL  201 (285)
T ss_dssp             TGGGCCCHHHHHHHHH-HHHHHHHT-TCCEEEEEEECS--------CCGGGHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cccCcCCHHHHHHHHH-HHHHHHHc-CCCEEEEEeCCC--------cchhhhhhhHhHHHHHHHHHHHHHcCCCCEEEEE
Confidence            3578888888888876 44444333 579999999998        44444433       222333   3467999999


Q ss_pred             eeeehhHHHHHHc-cCCCCCeeecCCceEeEecCC
Q 025057          177 VGNAWGEAALLLG-AGAKGNRAALPSSTIMIKQAG  210 (258)
Q Consensus       177 ~G~AASmAslILa-AG~kgkR~alPnSriMIHQP~  210 (258)
                      +|-+++.++..++ .|  ..-++.|+|++-+=-|.
T Consensus       202 ~g~~~GG~~as~a~~~--D~i~a~p~A~i~~aGP~  234 (285)
T 2f9i_B          202 THPTTGGVSASFASVG--DINLSEPKALIGFAGRR  234 (285)
T ss_dssp             EEEEEHHHHTTGGGCC--SEEEECTTCBEESSCHH
T ss_pred             eCCccHHHHHHhhhCC--CEEEEeCCcEEEEcCHH
Confidence            9999877765543 44  35678899988875554

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=88.66  E-value=1.2  Score=38.89  Aligned_cols=92  Identities=15%  Similarity=0.140  Sum_probs=62.1

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CC-Cc--ccc---------------HhhHHHHHHHhhccCCCE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GG-EK--LGY---------------ETEAFAIYDVMGYVKPPI  172 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~-~~--~G~---------------v~aGlAIYDtm~~ik~~V  172 (258)
                      ++.++...+...|-.++.++..+-|  .|-+.|... .| .+  +..               ......+++.|...+.||
T Consensus        30 l~~~~~~~L~~al~~~~~d~~vr~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv  107 (263)
T 3l3s_A           30 LSRAMIAALHDALRRAMGDDHVHVL--VIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPT  107 (263)
T ss_dssp             CCHHHHHHHHHHHHHHHTCTTCCEE--EEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEE--EEECCCCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            7788888888888877754433322  233333211 11 11  111               111245677788899999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       173 ~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      ...+-|.|.+.|.-|+++++  -|++.++++|-+-
T Consensus       108 IAav~G~a~GgG~~lalacD--~ria~~~a~f~~p  140 (263)
T 3l3s_A          108 IALVEGIATAAGLQLMAACD--LAYASPAARFCLP  140 (263)
T ss_dssp             EEEESSEEETHHHHHHHHSS--EEEECTTCEEECC
T ss_pred             EEEECCEEEHHHHHHHHHCC--EEEecCCCEEeCc
Confidence            99999999999999999994  6999999887653

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=88.51  E-value=2.2  Score=37.60  Aligned_cols=89  Identities=16%  Similarity=0.108  Sum_probs=62.7

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHh------------------hHHHHHHHhhccCCC
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET------------------EAFAIYDVMGYVKPP  171 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~------------------aGlAIYDtm~~ik~~  171 (258)
                      -++.++...+.+.|..++.++..+-|  .|-+.|... .|   +|+.                  ....++..|...+.|
T Consensus        27 al~~~~~~~L~~al~~~~~d~~vr~v--Vltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP  101 (268)
T 3i47_A           27 AFDNQLLTEMRIRLDSAINDTNVRVI--VLKANGKHFSAG---ADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKP  101 (268)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCSEE--EEEECSSCSBCS---BCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCeEEE--EEECCCCCeeCC---CChhhhhccccccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            37888888898888877765433332  333434221 22   2322                  123456678888999


Q ss_pred             EEEEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       172 V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      |...+-|.|.+.|.-|+++++  -|++.++++|-+
T Consensus       102 vIAav~G~a~GgG~~lalacD--~ria~~~a~f~~  134 (268)
T 3i47_A          102 TIAMVQGAAFGGGAGLAAACD--IAIASTSARFCF  134 (268)
T ss_dssp             EEEEECSEEETHHHHHHHHSS--EEEEETTCEEEC
T ss_pred             EEEEECCEEEhHhHHHHHhCC--EEEEcCCCEEEC
Confidence            999999999999999999994  699999998765

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=88.09  E-value=2  Score=37.78  Aligned_cols=92  Identities=15%  Similarity=0.087  Sum_probs=62.9

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH----------------hhHHHHHHHhhccCCCEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE----------------TEAFAIYDVMGYVKPPIFT  174 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v----------------~aGlAIYDtm~~ik~~V~T  174 (258)
                      ++.++...+...|..++.++..+-|  .|.+.|... .|-.+...                .....+++.|...+.||..
T Consensus        41 l~~~~~~~L~~al~~~~~d~~vr~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  118 (279)
T 3g64_A           41 LTFEAYADLRDLLAELSRRRAVRAL--VLAGEGRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIA  118 (279)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCCSEE--EEEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSSCEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEE--EEECCCCceecCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            7788889999888888765433333  333444221 12111111                0113566778889999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      .+-|.|.+.|.-|+++++  -|++.++++|-+-
T Consensus       119 av~G~a~GgG~~lalacD--~~ia~~~a~f~~p  149 (279)
T 3g64_A          119 ALHGVAAGAGAVLALAAD--FRVADPSTRFAFL  149 (279)
T ss_dssp             EECSEEETHHHHHHHHSS--EEEECTTCEEECC
T ss_pred             EEcCeeccccHHHHHhCC--EEEEeCCCEEeCc
Confidence            999999999999999994  6999999988653

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=88.09  E-value=1.5  Score=39.09  Aligned_cols=90  Identities=10%  Similarity=0.120  Sum_probs=62.8

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHh----------------hHHHHHHHhhccCCCEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET----------------EAFAIYDVMGYVKPPIF  173 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~----------------aGlAIYDtm~~ik~~V~  173 (258)
                      .++.++...+...|-.++.++..+-  +.|.+.|... .|   +|+.                ....++..|..++.||.
T Consensus        49 al~~~~~~~L~~al~~~~~d~~vr~--vVltg~G~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  123 (286)
T 3myb_A           49 ALSEAMLAALGEAFGTLAEDESVRA--VVLAASGKAFCAG---HDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVI  123 (286)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCE--EEEEECSSCSBCC---BCHHHHHSSCCHHHHHHHHHHHHHHHHHHHHSSSCEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCeEE--EEEECCCCCccCC---cChhhhhccccHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence            4678888888888887775443332  2333434221 22   2221                12356677888899999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      ..+-|.|.+.|.-|+++++  -|++.++++|-+-
T Consensus       124 Aav~G~a~GgG~~lalacD--~ria~~~a~f~~p  155 (286)
T 3myb_A          124 ARVHGIATAAGCQLVAMCD--LAVATRDARFAVS  155 (286)
T ss_dssp             EEECSCEETHHHHHHHHSS--EEEEETTCEEECG
T ss_pred             EEECCeehHHHHHHHHhCC--EEEEcCCCEEECc
Confidence            9999999999999999995  6999999988653

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=88.00  E-value=1.9  Score=37.72  Aligned_cols=92  Identities=17%  Similarity=0.180  Sum_probs=62.1

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCcccc-----------------HhhHHHHHHHhhccCCCEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGY-----------------ETEAFAIYDVMGYVKPPIF  173 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~-----------------v~aGlAIYDtm~~ik~~V~  173 (258)
                      ++.++...+.+.|-.++.++..+-|-|  .+-|... .|-.+..                 ......++..|...+.||.
T Consensus        35 l~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  112 (267)
T 3oc7_A           35 LSTALVSQLHQGLRDASSDPAVRVVVL--AHTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVI  112 (267)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEE--EECSSEEECCBC-----------CHHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCceeCCcCchhhhhccCchhhhhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence            778888999988888876543343333  2322111 1100010                 1123346677788899999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      ..+-|.|.+.|.-|+++++  -|++.++++|-+-
T Consensus       113 Aav~G~a~GgG~~lalacD--~~ia~~~a~f~~p  144 (267)
T 3oc7_A          113 AAIDGHVRAGGFGLVGACD--IAVAGPRSSFALT  144 (267)
T ss_dssp             EEECSEEETTHHHHHHHSS--EEEECTTCEEECC
T ss_pred             EEEcCeecccchHHHHHCC--EEEEcCCCEEeCc
Confidence            9999999999999999995  6999999998753

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=87.95  E-value=2.3  Score=42.19  Aligned_cols=100  Identities=15%  Similarity=0.171  Sum_probs=71.4

Q ss_pred             ceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHHHHH
Q 025057          110 MSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALL  187 (258)
Q Consensus       110 g~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslI  187 (258)
                      |.++.+.+.... +++.+-.. ..-||-.++|+||-..  .-|.-|-+-.+--+.+.+...+.|+.||++|-+.+.|++.
T Consensus       366 G~l~~~~a~Kaa-rfi~~c~~-~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~~~a~~~a~vP~itvi~g~~~Ggg~~a  443 (555)
T 3u9r_B          366 GILFAEAAQKGA-HFIELACQ-RGIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAGNYG  443 (555)
T ss_dssp             SSBCHHHHHHHH-HHHHHHHH-HTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEETTHHHH
T ss_pred             CccCHHHHHHHH-HHHHHHhc-CCCCEEEEecCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCccchhhHh
Confidence            667887766543 44444332 2579999999999332  1122255666777888899999999999999999998877


Q ss_pred             HccC--CCCCeeecCCceEeEecCCc
Q 025057          188 LGAG--AKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       188 LaAG--~kgkR~alPnSriMIHQP~~  211 (258)
                      +++.  .....+|.||+++-+=-|.+
T Consensus       444 m~~~~~~~d~~~a~p~A~i~Vmgpeg  469 (555)
T 3u9r_B          444 MCGRAYDPRFLWMWPNARIGVMGGEQ  469 (555)
T ss_dssp             TTCGGGCCSEEEECTTCEEESSCHHH
T ss_pred             hcCccCCCCeEEEcCCcEEEcCCHHH
Confidence            7631  23567899999998766655

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=87.84  E-value=1.2  Score=44.48  Aligned_cols=108  Identities=15%  Similarity=0.102  Sum_probs=77.2

Q ss_pred             cCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeee
Q 025057          102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGN  179 (258)
Q Consensus       102 ~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~  179 (258)
                      ++++..++|.++.+.+..... ++.|-.. -+-||-..+|.||-..  .-|.-|-+-.|--+...+...+.|+.||++|.
T Consensus       379 ~~~~~~~~G~l~~~~a~Kaar-fi~lcd~-f~iPlv~lvDtpGf~~G~~aE~~Gi~~~gAk~l~a~a~a~VP~itvI~g~  456 (588)
T 3gf3_A          379 KQNSVGIGGKLYRQGLIKMNE-FVTLCAR-DRIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEITIRK  456 (588)
T ss_dssp             SSSCEEETTEECHHHHHHHHH-HHHHHHH-TTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEEEESSE
T ss_pred             hhhhhccCCCcCHHHHHHHHH-HHHHhhh-cCCCeEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            567778899999987665553 3333322 2579999999998332  11112456677788899999999999999999


Q ss_pred             ehhHHHHHHccCCCC----CeeecCCceEeEecCCc
Q 025057          180 AWGEAALLLGAGAKG----NRAALPSSTIMIKQAGD  211 (258)
Q Consensus       180 AASmAslILaAG~kg----kR~alPnSriMIHQP~~  211 (258)
                      +.|.|.+.+++=.-+    ..+|.|||++-+=.|.+
T Consensus       457 ~~Ggg~~am~~~~~~~~~~~~~awp~A~~sVm~pEg  492 (588)
T 3gf3_A          457 ASAAAHYVLGGPQGNNTNVFSIGTGACEYYVMPGET  492 (588)
T ss_dssp             EETTHHHHTTCTTCTTTEEEEEECTTCEEESSCHHH
T ss_pred             ccHHHHHHhcccccCCccceEEECCCceEEeCCHHH
Confidence            999877666541112    45789999999877766

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=87.83  E-value=2.7  Score=38.71  Aligned_cols=90  Identities=12%  Similarity=0.239  Sum_probs=63.8

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCC-CC-CCCccccHh------------------hHHHHHHHhhccCC
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-TK-GGEKLGYET------------------EAFAIYDVMGYVKP  170 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg-~~-~~~~~G~v~------------------aGlAIYDtm~~ik~  170 (258)
                      -++.++...+...|-.++.++..+-  +.|-+-|+ .. -|   ||+.                  ....++..|..++.
T Consensus        32 Al~~~m~~~l~~al~~~~~d~~vr~--vvltg~G~~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~k  106 (353)
T 4hdt_A           32 SLTHGMVTTMAERLAAWENDDSVRA--VLLTGAGERGLCAG---GDVVAIYHSAKADGAEARRFWFDEYRLNAHIGRYPK  106 (353)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCE--EEEEESSSSBSBCC---BCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceE--EEEEeCCCCCEecC---cCHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCC
Confidence            3788888999988888776443222  33444442 11 22   2322                  22346677888899


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       171 ~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      ||...+-|.|.+.|.-|.++++  -|++.++++|-+-
T Consensus       107 PvIAav~G~a~GgG~~lal~cD--~ria~~~a~f~~p  141 (353)
T 4hdt_A          107 PYVSIMDGIVMGGGVGVGAHGN--VRVVTDTTKMAMP  141 (353)
T ss_dssp             CEEEEECBEEETHHHHHHTTSS--EEEECTTCEEECC
T ss_pred             CEEEEeECceeecCccccCCcC--eeccchhccccCc
Confidence            9999999999999999999994  6999999988764

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=87.47  E-value=1.3  Score=38.69  Aligned_cols=88  Identities=14%  Similarity=0.078  Sum_probs=59.1

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHh---------------hHHHHHHHhhccCCCEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET---------------EAFAIYDVMGYVKPPIFT  174 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~---------------aGlAIYDtm~~ik~~V~T  174 (258)
                      .++.++...+.+.|-.++.++..+-|-  |-+-|... .|   +|+.               ....+++.|...+.||..
T Consensus        39 al~~~~~~~L~~al~~~~~d~~vr~vV--ltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  113 (257)
T 1szo_A           39 VWTSTAHDELAYCFHDIACDRENKVVI--LTGTGPSFCNE---IDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIA  113 (257)
T ss_dssp             EECHHHHHHHHHHHHHHHHCTTCCEEE--EECBTTBSBCE---ECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEE--EEcCCCccccC---cCchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence            367888888888888777654333332  23323211 11   2221               123466777888999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      .+-|.|.+ |.-|++++  +.|++.++++|-+
T Consensus       114 av~G~a~G-G~~Lalac--D~ria~~~a~f~~  142 (257)
T 1szo_A          114 AVNGPVTN-APEIPVMS--DIVLAAESATFQD  142 (257)
T ss_dssp             EECSCBCS-STHHHHTS--SEEEEETTCEEEC
T ss_pred             EECCchHH-HHHHHHHC--CEEEEeCCCEEec
Confidence            99999995 88888888  4799999998866

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=87.26  E-value=1.9  Score=39.54  Aligned_cols=93  Identities=13%  Similarity=0.075  Sum_probs=63.1

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecC-----------CCCCCCCcccc--------------------HhhHHH
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINST-----------GTTKGGEKLGY--------------------ETEAFA  160 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSp-----------Gg~~~~~~~G~--------------------v~aGlA  160 (258)
                      ++.++...+.+.|-.++.++..+-|-|.=+.+           |+.- .+ ++.                    ......
T Consensus        81 l~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (334)
T 3t8b_A           81 FRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQ-RI-RGRSGYQYASGDTADTVDVARAGRLHILE  158 (334)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCT-TT-TC----------------------CCHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCH-HH-hhcccccccccccchhhhHHHHHHHHHHH
Confidence            67888899998888887654444333332221           2110 00 000                    011234


Q ss_pred             HHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeec-CCceEeEec
Q 025057          161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL-PSSTIMIKQ  208 (258)
Q Consensus       161 IYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~al-PnSriMIHQ  208 (258)
                      ++..|..++.||...+-|.|.+.|.-|.++++  -|++. ++++|.+-.
T Consensus       159 ~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD--~riAs~~~A~f~~pe  205 (334)
T 3t8b_A          159 VQRLIRFMPKVVICLVNGWAAGGGHSLHVVCD--LTLASREYARFKQTD  205 (334)
T ss_dssp             HHHHHHHSSSEEEEEECSEEETHHHHHHHHSS--EEEEETTTCEEECCC
T ss_pred             HHHHHHhCCCCEEEEECCccccCcchhHhhCC--EEEEeCCCcEEECcc
Confidence            67788899999999999999999999999994  69999 999987644

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=87.21  E-value=2.5  Score=37.79  Aligned_cols=89  Identities=17%  Similarity=0.068  Sum_probs=62.4

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhh-------------------HHHHHHHhhccCC
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE-------------------AFAIYDVMGYVKP  170 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~a-------------------GlAIYDtm~~ik~  170 (258)
                      -++.++...+.+.|-.++.++ .+ . +.|-+.|... .|   +|+.+                   ...++..|...+.
T Consensus        47 al~~~m~~~L~~al~~~~~d~-~r-~-vVltg~G~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  120 (291)
T 2fbm_A           47 ALNTEVIKEIVNALNSAAADD-SK-L-VLFSAAGSVFCCG---LDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKK  120 (291)
T ss_dssp             CBCHHHHHHHHHHHHHHHHSS-CS-E-EEEEECSSCSBCC---BCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHHHHHHHHHHHhcCC-Ce-E-EEEECCCCCccCC---cCHHHHHhcccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence            367888888888888777643 32 2 4444444221 22   33321                   1234566778899


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       171 ~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      ||...+-|.|.+.|.-|+++++  -|++.++++|-+-
T Consensus       121 PvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~p  155 (291)
T 2fbm_A          121 PIVVSVNGPAIGLGASILPLCD--LVWANEKAWFQTP  155 (291)
T ss_dssp             CEEEEECSCEETHHHHTGGGSS--EEEEETTCEEECC
T ss_pred             CEEEEECCeeecHHHHHHHhCC--EEEEeCCCEEECc
Confidence            9999999999999999999995  6999999988753

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=87.14  E-value=2.1  Score=36.75  Aligned_cols=89  Identities=18%  Similarity=0.198  Sum_probs=62.4

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH---------------hhHHHHHHHhhccCCCEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT  174 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v---------------~aGlAIYDtm~~ik~~V~T  174 (258)
                      .++.++...+...|-.++.+ +.+  -+.|.+-|... .|   +|+               .....++..|...+.||..
T Consensus        27 al~~~~~~~L~~al~~~~~d-~vr--~vvltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  100 (233)
T 3r6h_A           27 VLGPTMQQALNEAIDAADRD-NVG--ALVIAGNHRVFSGG---FDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVI  100 (233)
T ss_dssp             CCSHHHHHHHHHHHHHHHHH-TCS--EEEEECCSSEEECC---SCHHHHC---CHHHHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhC-CCe--EEEEECCCCCccCC---cChHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            46788888888888877753 222  23333333211 11   222               1224567788889999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      .+-|.|.+.|.-|.+++  +-|++.++++|-+-
T Consensus       101 av~G~a~GgG~~lalac--D~~ia~~~a~f~~p  131 (233)
T 3r6h_A          101 ACTGHAIAMGAFLLCSG--DHRVAAHAYNVQAN  131 (233)
T ss_dssp             EECSEEETHHHHHHTTS--SEEEECTTCCEECC
T ss_pred             EECCcchHHHHHHHHhC--CEEEEeCCcEEECc
Confidence            99999999999999999  46999999988753

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=86.92  E-value=1.8  Score=38.17  Aligned_cols=90  Identities=13%  Similarity=0.117  Sum_probs=63.4

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhh-----------------HHHHHHHhhccCCCE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE-----------------AFAIYDVMGYVKPPI  172 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~a-----------------GlAIYDtm~~ik~~V  172 (258)
                      .++.++...+...|-.++.++..+-  +.|-+.|... .|   +|+.+                 ...++..|...+.||
T Consensus        36 al~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv  110 (272)
T 3qk8_A           36 SVGPQMHRDLADVWPVIDRDPDVRV--VLVRGEGKAFSSG---GSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPV  110 (272)
T ss_dssp             EECHHHHHHHHHHHHHHHHCTTCSE--EEEEESSSCSBCE---ECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTCCSCE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCceE--EEEECCCCCeeCC---cCHHHHhccccchHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            3788888899988888876543332  3334444221 22   23221                 124566788889999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       173 ~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      ...+-|.|.+.|.-|+++++  -|++.++++|-+-
T Consensus       111 IAav~G~a~GgG~~lalacD--~ria~~~a~f~~p  143 (272)
T 3qk8_A          111 VSAIRGPAVGAGLVVALLAD--ISVASATAKIIDG  143 (272)
T ss_dssp             EEEECSEEEHHHHHHHHHSS--EEEEETTCEEECC
T ss_pred             EEEECCeeehHHHHHHHhCC--EEEEcCCCEEECc
Confidence            99999999999999999994  6999999998753

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=86.72  E-value=1.3  Score=39.43  Aligned_cols=91  Identities=15%  Similarity=0.129  Sum_probs=61.3

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhh-------------HHHHHHHhhccCCCEEEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE-------------AFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~a-------------GlAIYDtm~~ik~~V~Ti~  176 (258)
                      .++.++...+.+.|-.++.++..+-  +.|.+.|... .|   +|+.+             .+..++.|...+.||...+
T Consensus        48 al~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  122 (278)
T 3h81_A           48 ALNSQVMNEVTSAATELDDDPDIGA--IIITGSAKAFAAG---ADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAV  122 (278)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCE--EEEECCSSEEECC---BCSHHHHTCCHHHHHHHTTTGGGHHHHTCCSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCeEE--EEEECCCCCeecC---cCHHHHhccChhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            3678888888888887775433332  2333322111 22   22211             1112566788899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      -|.|.+.|.-|+++++  -|++.++++|-+-.
T Consensus       123 ~G~a~GgG~~LalacD--~ria~~~a~f~~pe  152 (278)
T 3h81_A          123 AGYALGGGCELAMMCD--VLIAADTAKFGQPE  152 (278)
T ss_dssp             CBEEETHHHHHHHHSS--EEEEETTCEEECGG
T ss_pred             CCeeehHHHHHHHHCC--EEEEcCCCEEECch
Confidence            9999999999999995  69999999987643

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=86.66  E-value=1.9  Score=38.43  Aligned_cols=93  Identities=14%  Similarity=0.106  Sum_probs=62.6

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CC-Cc--cc----------------cHhhHHHHHHHhhccCC
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GG-EK--LG----------------YETEAFAIYDVMGYVKP  170 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~-~~--~G----------------~v~aGlAIYDtm~~ik~  170 (258)
                      -++.++...+.+.|..++.++..+-  +.|.+.|... .| .+  +.                .......+++.|...+.
T Consensus        47 al~~~~~~~L~~al~~~~~d~~vr~--vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  124 (290)
T 3sll_A           47 AMAFDVMLPFKQMLVDISHDNDVRA--VVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQ  124 (290)
T ss_dssp             CCCHHHHHHHHHHHHHHHTCTTCCE--EEEEESTTCSBCC------CCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCeeE--EEEECCCCCeeCCcChHHHhcccccccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence            3677888888888877775443332  3334444221 11 11  00                01223456778888999


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       171 ~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      ||...+-|.|.+.|.-|+++++  -|++.++++|-+-
T Consensus       125 PvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~p  159 (290)
T 3sll_A          125 PVIAAINGAAIGGGLCLALACD--VRVASQDAYFRAA  159 (290)
T ss_dssp             CEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECT
T ss_pred             CEEEEECCeehHHHHHHHHHCC--EEEEeCCCEEECc
Confidence            9999999999999999999994  6999999987653

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=86.59  E-value=1.1  Score=39.55  Aligned_cols=90  Identities=12%  Similarity=0.164  Sum_probs=59.5

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEE-ecCCCCC-CCCccccHhhH--------------H-----H-HHHHhhcc
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTK-GGEKLGYETEA--------------F-----A-IYDVMGYV  168 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyI-NSpGg~~-~~~~~G~v~aG--------------l-----A-IYDtm~~i  168 (258)
                      -++.++...+...|..++.++   ++...| -+-|... .|   +|+.+-              +     . +++.|...
T Consensus        32 al~~~~~~~L~~al~~~~~d~---~vr~vVltg~g~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  105 (276)
T 2j5i_A           32 AMSPTLNREMIDVLETLEQDP---AAGVLVLTGAGEAWTAG---MDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMY  105 (276)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCT---TEEEEEEEESTTCSBCC---BCHHHHHHHHHHSCTTHHHHHHHHHHHHHTTTTTTC
T ss_pred             CCCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCCCcCC---cChhhHhhccccchhHHHHHHHHHHHHHHHHHHHhC
Confidence            367788888888887776533   344333 3333221 22   333220              0     1 13445667


Q ss_pred             CCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          169 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       169 k~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      +.||...+-|.|.+.|.-|+++++  -|++.++++|-+-.
T Consensus       106 ~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe  143 (276)
T 2j5i_A          106 AKPTIAMVNGWCFGGGFSPLVACD--LAICADEATFGLSE  143 (276)
T ss_dssp             SSCEEEEECSCEEGGGHHHHHHSS--EEEEETTCEEECGG
T ss_pred             CCCEEEEECCeeehhHHHHHHhCC--EEEEcCCCEEeCcc
Confidence            789999999999999999999994  69999999887643

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=86.54  E-value=3  Score=37.17  Aligned_cols=89  Identities=13%  Similarity=0.039  Sum_probs=62.8

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccH------------------hhHHHHHHHhhccCC
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYE------------------TEAFAIYDVMGYVKP  170 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v------------------~aGlAIYDtm~~ik~  170 (258)
                      .++.++...+...|..++.++..+-|-|  -+-|...  .|   +|+                  .....++..|...+.
T Consensus        30 al~~~~~~~L~~al~~~~~d~~vr~vVl--tg~G~~ff~~G---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  104 (289)
T 3h0u_A           30 LIGPEVVRDLVALLEELAHPTAPRVVIF--DSADADFFFPH---VDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPA  104 (289)
T ss_dssp             CBCHHHHHHHHHHHHHTTSTTSCSEEEE--EECSSSEEECS---BCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSS
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCceeCC---cCHHHHhhcCcchhhhHHHHHHHHHHHHHHHHhCCC
Confidence            3788889999988888876543333333  3333110  12   122                  122456777888999


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCC-ceEeE
Q 025057          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPS-STIMI  206 (258)
Q Consensus       171 ~V~Ti~~G~AASmAslILaAG~kgkR~alPn-SriMI  206 (258)
                      ||...+-|.|.+.|.-|+++++  -|++.++ ++|-+
T Consensus       105 PvIAaV~G~a~GgG~~LalacD--~ria~~~~a~f~~  139 (289)
T 3h0u_A          105 VTIAKLRGRARGAGSEFLLACD--MRFASRENAILGQ  139 (289)
T ss_dssp             EEEEEECSEEETHHHHHHHHSS--EEEEETTTCEEEC
T ss_pred             CEEEEECCEeehhhHHHHHhCC--EEEEeCCCcEEeC
Confidence            9999999999999999999994  6999998 88765

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=86.27  E-value=1.4  Score=45.52  Aligned_cols=110  Identities=11%  Similarity=0.064  Sum_probs=76.4

Q ss_pred             hhhcCcEEE-eCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEE
Q 025057           99 YLYKNRIVY-LGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTL  175 (258)
Q Consensus        99 ~Ll~eRIIf-Lgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti  175 (258)
                      .=.++++.- .+|.++++.+.....-+..-+  ..+-||-..+|.||-..  .-|.-|-+-.|-.+.+.+...+.|+.||
T Consensus       450 ~~~~e~~~~~~gG~l~~~~a~KaarfI~~cd--~f~iPlv~LvDtpGf~~G~~aE~~Gi~~~gAkll~A~a~a~VP~itv  527 (793)
T 2x24_A          450 LDSEAKIIQQAGQVWFPDSAYKTAQAIKDFN--REKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLIY  527 (793)
T ss_dssp             TTCCCEEEEECTTEECHHHHHHHHHHHHHHH--TTTCCEEEECCBCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             cchhhhhhhhcCCcccHHHHHHHHHHHHHhc--cCCCCEEEEecCCCCCCCHHHHHhhHHHHHHHHHHHHHhcCCCEEEE
Confidence            334566664 479999988766554333333  34689999999999442  1122355667888899999999999999


Q ss_pred             E--eeeehhHHHHHHccCCCCC----eeecCCceEeEecCCc
Q 025057          176 C--VGNAWGEAALLLGAGAKGN----RAALPSSTIMIKQAGD  211 (258)
Q Consensus       176 ~--~G~AASmAslILaAG~kgk----R~alPnSriMIHQP~~  211 (258)
                      +  .|-+.+ |+..+++..-+-    .+|.|+|++-+=.|.+
T Consensus       528 I~r~Ge~~G-Ga~~~~~~~~~~d~~ev~Awp~A~~~VM~pEg  568 (793)
T 2x24_A          528 IPPYAEVRG-GSWAVMDTSINPLCIEMYADRESRASVLEPEG  568 (793)
T ss_dssp             ECTTCEEEH-HHHHTTCGGGSTTTEEEEEETTCEEESSCHHH
T ss_pred             EecCCcccc-hhHHhhhcccCccHHHHhhhccCEEEecCHHH
Confidence            9  898866 666666533332    3899999998876665

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=86.26  E-value=3  Score=36.77  Aligned_cols=95  Identities=17%  Similarity=0.172  Sum_probs=64.4

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH---------h-------hHHHHHHHhhccCCCEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE---------T-------EAFAIYDVMGYVKPPIF  173 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v---------~-------aGlAIYDtm~~ik~~V~  173 (258)
                      -++.++...+.+.|..++.++..+-  +.|-+-|... .|-.+.+.         .       ....++..|...+.||.
T Consensus        38 Al~~~m~~~L~~al~~~~~d~~vr~--vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI  115 (274)
T 4fzw_C           38 SFNDEMHAQLAECLKQVERDDTIRC--LLLTGAGRGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVI  115 (274)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCE--EEEEESSSCSBCCBCCC---------CCCHHHHHHHTHHHHHHHHHHCSSCEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceE--EEEECCCCceeCCcChHhhhccccccchHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence            4788888889888888876543332  3334444221 12111110         0       12246677888999999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeEecC
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQA  209 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP  209 (258)
                      ..+-|.|.+.|.-|+++++  -|++.++++|-+-..
T Consensus       116 Aav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  149 (274)
T 4fzw_C          116 CAVNGVAAGAGATLALGGD--IVIAARSAKFVMAFS  149 (274)
T ss_dssp             EEECSCEETHHHHHHHTSS--EEEEETTCEEECCGG
T ss_pred             EEECCceeecCceeeeccc--eEEECCCCEEECccc
Confidence            9999999999999999995  699999999876443

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=86.17  E-value=4.5  Score=34.89  Aligned_cols=93  Identities=14%  Similarity=0.145  Sum_probs=64.7

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CC-Cc--cc--------cHhhHHHHHHHhhccCCCEEEEEeee
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GG-EK--LG--------YETEAFAIYDVMGYVKPPIFTLCVGN  179 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~-~~--~G--------~v~aGlAIYDtm~~ik~~V~Ti~~G~  179 (258)
                      ++.++...+...|-.++.++..+-  +.|.+.|... .| .+  ++        .......+++.|...+.||...+-|.
T Consensus        24 l~~~m~~~L~~al~~~~~d~~vr~--vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  101 (254)
T 3hrx_A           24 ITGELLDALYAALKEGEEDREVRA--LLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGV  101 (254)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCE--EEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeEE--EEEeCCCCCcccCccHHHhcccchhhHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence            788888999988888876543332  2333434221 22 11  01        11233457788889999999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          180 AWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       180 AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      |.+.|.-|++++  +-|++.++++|-+-.
T Consensus       102 a~GgG~~lalac--D~ria~~~a~f~~pe  128 (254)
T 3hrx_A          102 AAGAGMSLALWG--DLRLAAVGASFTTAF  128 (254)
T ss_dssp             EETHHHHHHTTC--SEEEEETTCEEECCG
T ss_pred             eeehhhhhhhcc--ceeeEcCCCEEEchh
Confidence            999999999999  469999999986543

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=85.66  E-value=2.1  Score=37.42  Aligned_cols=90  Identities=14%  Similarity=0.146  Sum_probs=62.1

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHh------------hHHH-HHHHh-h--ccCCCEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET------------EAFA-IYDVM-G--YVKPPIFT  174 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~------------aGlA-IYDtm-~--~ik~~V~T  174 (258)
                      ++.++...+...|-.++.++..+-  +.|.+.|... .|   +|+.            .... +++.| .  ..+.||..
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIA  107 (265)
T 3rsi_A           33 LSTNMVSQFAAAWDEIDHDDGIRA--AILTGAGSAYCVG---GDLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIA  107 (265)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCE--EEEEESTTCSEEC---C--------------CCCHHHHHHHTTSSCCCSSCEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceE--EEEECCCCCcccC---cCCCcccccchHHHHHHhHHHHHHHHHHhcCCCCCEEE
Confidence            788889999988888776443332  2334444221 11   1221            1123 77788 7  78899999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      .+-|.|.+.|.-|+++++  -|++.++++|-+-.
T Consensus       108 av~G~a~GgG~~lalacD--~~ia~~~a~f~~pe  139 (265)
T 3rsi_A          108 AVNGACLGGGCEMLQQTD--IRVSDEHATFGLPE  139 (265)
T ss_dssp             EECSCEETHHHHHHTTCS--EEEEETTCEEECGG
T ss_pred             EECCeeeHHHHHHHHHCC--EEEecCCCEEECch
Confidence            999999999999999994  69999999986533

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=85.49  E-value=1.7  Score=44.70  Aligned_cols=115  Identities=13%  Similarity=0.039  Sum_probs=79.9

Q ss_pred             ChHHhhhcCcEEEe-CceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCC
Q 025057           95 DLASYLYKNRIVYL-GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPP  171 (258)
Q Consensus        95 Di~s~Ll~eRIIfL-gg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~  171 (258)
                      |-.+...++++..- +|.++++.+.... +++.+-....+-||-..+|.||-..  .-|.-|-.-.|-.+.+.+...+.|
T Consensus       431 dP~~p~~~e~~~~~~gG~l~pe~a~KaA-rfI~lcd~~f~iPLv~LvDtpGf~~G~~aE~~Gi~k~gAkll~A~a~a~VP  509 (758)
T 3k8x_A          431 DPANPNSAETLIQEPGQVWHPNSAFKTA-QAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQP  509 (758)
T ss_dssp             CTTSTTCCCEEEEECTTEECHHHHHHHH-HHHHHHHHTSCCCEEECCCCCEECCSHHHHHTTHHHHHHHHHHHHHTCCSC
T ss_pred             cccCcchhhhHHhhcCCCCCHHHHHHHH-HHHHHhhhccCCCEEEEecCCCCCCCHHHHHccHHHHHHHHHHHHHhCCCC
Confidence            33334456676654 5899998877665 4544433323679999999998443  112235566788899999999999


Q ss_pred             EEEEEe--eeehhHHHHHHccCC--CCC--eeecCCceEeEecCCc
Q 025057          172 IFTLCV--GNAWGEAALLLGAGA--KGN--RAALPSSTIMIKQAGD  211 (258)
Q Consensus       172 V~Ti~~--G~AASmAslILaAG~--kgk--R~alPnSriMIHQP~~  211 (258)
                      +.||++  |-+.+ |+.+.+++.  .+.  .+|.|||++-+=.|.+
T Consensus       510 ~itVI~RkGe~~G-GA~~am~~~~~ad~~~v~Awp~A~isVM~pEg  554 (758)
T 3k8x_A          510 IIIYIPPTGELRG-GSWVVVDPTINADQMEMYADVNARAGVLEPQG  554 (758)
T ss_dssp             EEEEECTTCEEET-HHHHTTCGGGSTTTEEEEEETTCEEESSCHHH
T ss_pred             EEEEEecCCccch-HHHHHhCcccCCCHHHHhcCCCCEEEccCHHH
Confidence            999999  99887 555555421  234  7899999998877776

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=85.12  E-value=3.1  Score=36.65  Aligned_cols=89  Identities=11%  Similarity=-0.048  Sum_probs=60.7

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhh--------------------------HHHHHHH
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE--------------------------AFAIYDV  164 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~a--------------------------GlAIYDt  164 (258)
                      ++.++...+...|-.++.++..+-  +.|-+-|... .|   +|+.+                          ...+++.
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (280)
T 1pjh_A           33 LEGEDYIYLGELLELADRNRDVYF--TIIQSSGRFFSSG---ADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDA  107 (280)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCE--EEEECBTTBSBCC---BCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceE--EEEECCCCCccCC---cCHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence            678888888888887775443332  2233333221 11   22211                          0245567


Q ss_pred             hhccCCCEEEEEeeeehhHHHHHHccCCCCCeeec-CCceEeEe
Q 025057          165 MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL-PSSTIMIK  207 (258)
Q Consensus       165 m~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~al-PnSriMIH  207 (258)
                      |...+.||...+-|.|.+.|.-|+++++  -|++. ++++|-+-
T Consensus       108 l~~~~kPvIAav~G~a~GgG~~LalacD--~~ia~~~~a~f~~p  149 (280)
T 1pjh_A          108 FIKHSKVLICCLNGPAIGLSAALVALCD--IVYSINDKVYLLYP  149 (280)
T ss_dssp             HHHCCSEEEEEECSCEEHHHHHHHHHSS--EEEESSTTCEEECC
T ss_pred             HHhCCCCEEEEECCeeeeHHHHHHHHCC--EEEEeCCCCEEeCc
Confidence            7888999999999999999999999995  69999 99987753

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=84.17  E-value=0.67  Score=40.68  Aligned_cols=90  Identities=16%  Similarity=0.132  Sum_probs=61.8

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhh--------------HHHHHHHhhccCCCEEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE--------------AFAIYDVMGYVKPPIFTL  175 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~a--------------GlAIYDtm~~ik~~V~Ti  175 (258)
                      -++.++...+.+.|-.++.++..+-|-  |.+.|... .|   +|+.+              ...++..|...+.||...
T Consensus        30 al~~~~~~~L~~al~~~~~d~~vr~vV--ltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  104 (265)
T 3qxz_A           30 SFTVELGRQLGAAYQRLDDDPAVRVIV--LTGAPPAFCSG---AQISAAAETFAAPRNPDFSASPVQPAAFELRTPVIAA  104 (265)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEE--EEESTTEEECC---BCSTTCTTCCCCCCSSCCCSCCSSSCGGGSSSCEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCceEEE--EECCCCccccC---cChHHHhhccchhHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            378888899998888887654333333  33333211 11   11111              033456678888999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       176 ~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      +-|.|.+.|.-|+++++  -|++.++++|-+-
T Consensus       105 v~G~a~GgG~~lalacD--~~ia~~~a~f~~p  134 (265)
T 3qxz_A          105 VNGHAIGIGMTLALHAD--IRILAEEGRYAIP  134 (265)
T ss_dssp             ECSEEETHHHHHHTTSS--EEEEETTCCEECC
T ss_pred             ECCEEehHhHHHHHHCC--EEEEcCCCEEECc
Confidence            99999999999999994  6999999987753

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=84.12  E-value=5.2  Score=36.28  Aligned_cols=46  Identities=9%  Similarity=-0.035  Sum_probs=39.1

Q ss_pred             HHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       161 IYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      ++..|...+.||...+-|.|.+.|.-|+++++  -|++.++++|-+-.
T Consensus       149 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD--~rias~~a~f~~pe  194 (333)
T 3njd_A          149 GFASLMHCDKPTVVKIHGYCVAGGTDIALHAD--QVIAAADAKIGYPP  194 (333)
T ss_dssp             HHTHHHHSSSCEEEEECSEEETHHHHHHTTSS--EEEECTTCEEECGG
T ss_pred             HHHHHHhCCCCEEEEECCEEeHHHHHHHHhCC--EEEECCCCeeechh
Confidence            34567778999999999999999999999994  69999999877644

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=83.85  E-value=1.8  Score=38.20  Aligned_cols=91  Identities=11%  Similarity=0.029  Sum_probs=59.1

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEe----cCCCCCCCCccc---cH-------hhHHHHHHHhhccCCCEEEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYIN----STGTTKGGEKLG---YE-------TEAFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyIN----SpGg~~~~~~~G---~v-------~aGlAIYDtm~~ik~~V~Ti~  176 (258)
                      .++.++...+.+.|-.++.++..+-|-|.=+    |.|+.- .+ +.   +-       .....+++.|...+.||...+
T Consensus        47 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  124 (263)
T 2j5g_A           47 VFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDF-PS-LGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAV  124 (263)
T ss_dssp             EECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECS-GG-GCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCH-HH-HhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            4678888889888888876543343333211    333210 00 11   00       011345677788899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      -|.|.+ |.-|++++  +.|++.++++|-+
T Consensus       125 ~G~a~G-G~~Lalac--D~ria~~~a~f~~  151 (263)
T 2j5g_A          125 NGAALL-HSEYILTT--DIILASENTVFQD  151 (263)
T ss_dssp             CSEECS-CGGGGGGC--SEEEEETTCEECC
T ss_pred             CCcchH-HHHHHHhC--CEEEEcCCCEEec
Confidence            999995 77777888  4799999999865

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=83.49  E-value=4  Score=35.62  Aligned_cols=91  Identities=10%  Similarity=0.034  Sum_probs=63.5

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHh-------------hHHHHHHHhhccCCCEEEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET-------------EAFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~-------------aGlAIYDtm~~ik~~V~Ti~  176 (258)
                      -++.++...+.+.|-.++.++..+-  +.|.+.|... .|   +|+.             ....++..|..++.||...+
T Consensus        28 al~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  102 (258)
T 4fzw_A           28 ALNNALLMQLVNELEAAATDTSISV--CVITGNARFFAAG---ADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAV  102 (258)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCE--EEEECCSSEEEEC---BCHHHHHTCCHHHHHTCSHHHHHHHHHTCCSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCeEE--EEEeCCCCceeCC---CchhhhccchhhhHHHhHHHHHHHHHHHCCCCEEEEE
Confidence            3677888888888877775443222  2233333211 11   2221             22457888899999999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      -|.|.+.|.-|+++++  -|++.++++|-+-.
T Consensus       103 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe  132 (258)
T 4fzw_A          103 NGYALGAGCELALLCD--VVVAGENARFGLPE  132 (258)
T ss_dssp             CSEEETHHHHHHHHSS--EEEEETTCEEECCG
T ss_pred             cCcceeeeeEeecccc--eEEECCCCEEECcc
Confidence            9999999999999995  69999999987643

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=83.27  E-value=0.75  Score=40.57  Aligned_cols=89  Identities=13%  Similarity=0.116  Sum_probs=58.4

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhh---------------HHHHHHHhh---ccCCCE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE---------------AFAIYDVMG---YVKPPI  172 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~a---------------GlAIYDtm~---~ik~~V  172 (258)
                      ++.++...+.+.|..++.++..+-  +.|.+.|... .|   +|+.+               ...+++.|.   ..+.||
T Consensus        44 l~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPv  118 (278)
T 4f47_A           44 LSGEMMQIMVEAWDRVDNDPDIRC--CILTGAGGYFCAG---MDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPL  118 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCE--EEEEESTTCCC-------------------------CTTCBTTTTBSCCCSSCE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeeE--EEEECCCCcccCC---cChHhhhccchhhhHHHHHHHHHHHHHHHHhcCCCCCE
Confidence            678888889888887776443332  2334444221 12   12211               112334455   677899


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       173 ~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      ...+-|.|.+.|.-|+++++  .|++.++++|-+-
T Consensus       119 IAav~G~a~GgG~~lalacD--~ria~~~a~f~~p  151 (278)
T 4f47_A          119 IAAVEGPAIAGGTEILQGTD--IRVAAESAKFGIS  151 (278)
T ss_dssp             EEEECSEEETHHHHHHTTCS--EEEEETTCEEECC
T ss_pred             EEEECCEEehHHHHHHHhCC--EEEEcCCCEEECc
Confidence            99999999999999999994  6999999998653

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=82.07  E-value=2.4  Score=37.06  Aligned_cols=89  Identities=11%  Similarity=-0.031  Sum_probs=59.5

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhh------HHHHHHHhhccCCCEEEEEeeeehhHH
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE------AFAIYDVMGYVKPPIFTLCVGNAWGEA  184 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~a------GlAIYDtm~~ik~~V~Ti~~G~AASmA  184 (258)
                      ++.++...+...|-.++.++..+-|  .|.+.|... .|   +|+.+      ...++..+...+.||...+-|.|.+.|
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~v--vltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG  107 (256)
T 3pe8_A           33 LSAELRSTFFRALSDAQNDDDVDVV--IVTGADPVFCAG---LDLKELGDTTELPDISPKWPDMTKPVIGAINGAAVTGG  107 (256)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCSEE--EEEESTTCSBCC---BCTTTC---------CCCCCCCSSCEEEEECSEEETHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeEEE--EEECCCCCccCC---cCHHHHhhhHHHHHHHHHHHhCCCCEEEEECCeeechH
Confidence            7888888999888888764433322  233333221 22   22221      112234466778899999999999999


Q ss_pred             HHHHccCCCCCeeecCCceEeEe
Q 025057          185 ALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       185 slILaAG~kgkR~alPnSriMIH  207 (258)
                      .-|+++++  -|++.++++|-+.
T Consensus       108 ~~lalacD--~~ia~~~a~f~~p  128 (256)
T 3pe8_A          108 LELALYCD--ILIASENAKFADT  128 (256)
T ss_dssp             HHHHHHSS--EEEEETTCEEECC
T ss_pred             HHHHHhCC--EEEEcCCCEEECc
Confidence            99999994  6999999998753

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=81.15  E-value=5.6  Score=35.04  Aligned_cols=91  Identities=12%  Similarity=0.021  Sum_probs=61.2

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHh-----------------hHHHHHHHhhccCCCEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET-----------------EAFAIYDVMGYVKPPIF  173 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~-----------------aGlAIYDtm~~ik~~V~  173 (258)
                      ++.++...+.+.|-.++.++..+-  +.|.+-|... .|-.+..+.                 ....++..|...+.||.
T Consensus        44 l~~~~~~~L~~al~~~~~d~~vr~--vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  121 (279)
T 3t3w_A           44 QNPELLDELDAAWTRAAEDNDVSV--IVLRANGKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSI  121 (279)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCE--EEEEECSSCSBCCBCCC--------CCHHHHHHHHHHHTHHHHHHHHHCSSCEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeEE--EEEECCCCceeeccChHhhhhcccccchHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            678888899988888776443332  3334444322 221111110                 11235567788899999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      ..+-|.|.+.|.-|++++  +-|++.++++|-+
T Consensus       122 Aav~G~a~GgG~~Lalac--D~ria~~~a~f~~  152 (279)
T 3t3w_A          122 AAVQGRCISGGLLLCWPC--DLIIAAEDALFSD  152 (279)
T ss_dssp             EEECSEEEGGGHHHHTTS--SEEEEETTCEEEC
T ss_pred             EEECCeEhHHHHHHHHhC--CEEEecCCCEEeC
Confidence            999999999999999999  4699999998765

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=80.62  E-value=7.3  Score=33.29  Aligned_cols=88  Identities=19%  Similarity=0.165  Sum_probs=62.0

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhh--------------HHHHHHHhhccCCCEEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE--------------AFAIYDVMGYVKPPIFTL  175 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~a--------------GlAIYDtm~~ik~~V~Ti  175 (258)
                      -++.++...+...|..++. |+ +  -+.|-+.|... .|   +|+.+              ...++..|...+.||...
T Consensus        28 al~~~~~~~L~~al~~~~~-d~-~--~vvltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  100 (232)
T 3ot6_A           28 AISPDVIIAFNAALDQAEK-DR-A--IVIVTGQPGILSGG---YDLKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVA  100 (232)
T ss_dssp             CBCHHHHHHHHHHHHHHHH-TT-C--EEEEECBTEEEECC---BCHHHHHHCHHHHHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhc-CC-C--EEEEECCCCCccCC---cCHHHHhhChHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4678888888888877774 32 2  24444433221 22   33322              245677888899999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCC-ceEeEe
Q 025057          176 CVGNAWGEAALLLGAGAKGNRAALPS-STIMIK  207 (258)
Q Consensus       176 ~~G~AASmAslILaAG~kgkR~alPn-SriMIH  207 (258)
                      +-|.|.+.|.-|+++++  -|++.++ ++|-+-
T Consensus       101 v~G~a~GgG~~lalacD--~ria~~~~a~f~~p  131 (232)
T 3ot6_A          101 CPGHAVAKGAFLLLSAD--YRIGVAGPFSIGLN  131 (232)
T ss_dssp             CCEEEETHHHHHHTTSS--EEEEECSSCCEECC
T ss_pred             ECCEeehHHHHHHHHCC--EEEEeCCCcEEECc
Confidence            99999999999999994  6899997 677653

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=80.46  E-value=2.2  Score=37.12  Aligned_cols=91  Identities=11%  Similarity=0.095  Sum_probs=61.3

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhh---------------HHHHHHHh-hccCCCEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE---------------AFAIYDVM-GYVKPPIF  173 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~a---------------GlAIYDtm-~~ik~~V~  173 (258)
                      -++.++...+...|-.++.++..+-|  .|-+-|... .|   +|+.+               ....++.| ...+.||.
T Consensus        35 al~~~~~~~l~~al~~~~~d~~vr~v--Vltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvI  109 (258)
T 3lao_A           35 AFDSAMLADLALAMGEYERSEESRCA--VLFAHGEHFTAG---LDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLV  109 (258)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEE--EEEESSSCSBCC---BCHHHHGGGCBTTBCCCCTTCCCTTSCSSSCCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCcEEE--EEECCCCCeecC---cCHHHHhhccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence            46788888888888877764433333  333333211 11   22211               12335556 77788999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      ..+-|.|.+.|.-|+++++  -|++.++++|-+-.
T Consensus       110 Aav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe  142 (258)
T 3lao_A          110 VAVQGTCWTAGIELMLNAD--IAVAARGTRFAHLE  142 (258)
T ss_dssp             EEECSEEETHHHHHHHTSS--EEEEETTCEEECGG
T ss_pred             EEECCEeEhHHHHHHHhCC--EEEEcCCCEEeCcc
Confidence            9999999999999999994  69999999887643

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=80.19  E-value=6.6  Score=34.46  Aligned_cols=93  Identities=6%  Similarity=-0.005  Sum_probs=62.9

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCcccc--------------HhhHHHHHHHhhccCCCEEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGY--------------ETEAFAIYDVMGYVKPPIFTL  175 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~--------------v~aGlAIYDtm~~ik~~V~Ti  175 (258)
                      -++.++...+.+.|..++. |+.+  -+.|-+-|... .|-.+..              ......++..|...+.||...
T Consensus        30 al~~~~~~~L~~al~~~~~-d~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  106 (267)
T 3hp0_A           30 TINDTLIEECLQVLNQCET-STVT--VVVLEGLPEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISH  106 (267)
T ss_dssp             CBCSHHHHHHHHHHHHHHH-SSCC--EEEEECCSSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhc-CCCE--EEEEECCCCceecCcCHHHHHhcccChHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4677888888888887775 3222  23344444221 2211111              112345677788889999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       176 ~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      +-|.|.+.|.-|+++++  -|++.++++|-+-.
T Consensus       107 v~G~a~GgG~~lalacD--~ria~~~a~f~~pe  137 (267)
T 3hp0_A          107 VRGKVNAGGLGFVSATD--IAIADQTASFSLSE  137 (267)
T ss_dssp             ECSEEETTHHHHHHHSS--EEEECTTCEEECCG
T ss_pred             ECCEEeehHHHHHHhCC--EEEEcCCCEEECch
Confidence            99999999999999994  69999999986643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d1yg6a1	183	c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Es	5e-32
d2cbya1	179	c.14.1.1 (A:15-193) Clp protease, ClpP subunit {My	7e-28
d1tg6a1	193	c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Hum	9e-26
d1y7oa1	192	c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Str	2e-23
d2f6ia1	190	c.14.1.1 (A:177-366) Clp protease, ClpP subunit {P	7e-21

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

 Score =  113 bits (285), Expect = 5e-32
 Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 8/114 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G 
Sbjct: 8   DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GV 59

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
            T   +IYD M ++KP + T+C+G A    A LL AGAKG R  LP+S +MI Q
Sbjct: 60  ITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQ 113

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  103 bits (257), Expect = 7e-28
 Identities = 40/111 (36%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 98  SYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETE 157
             L   RI++LG      +   + A+ L L  ED  K I LYINS G        G  + 
Sbjct: 8   ERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG--------GSISA 59

Query: 158 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
             AIYD M      I T  +G A      LL AG KG R ALP + I++ Q
Sbjct: 60  GMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQ 110

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 98.1 bits (244), Expect = 9e-26
 Identities = 54/134 (40%), Positives = 71/134 (52%), Gaps = 11/134 (8%)

Query: 75  PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEK 134
           P+I +V+  T          D+ S L + RIV +      SV  L++A+ L+LQ E  +K
Sbjct: 1   PLIPIVVEQTGRGERAY---DIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKK 57

Query: 135 PIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKG 194
           PI++YINS G           T   AIYD M Y+  PI T CVG A    +LLL AG  G
Sbjct: 58  PIHMYINSPGG--------VVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPG 109

Query: 195 NRAALPSSTIMIKQ 208
            R +LP+S IMI Q
Sbjct: 110 MRHSLPNSRIMIHQ 123

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} Length = 192

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 92.0 bits (228), Expect = 2e-23
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 11/132 (8%)

Query: 77  ITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPI 136
           I +VI  TS         D+ S L K+RI+ L      ++   ++A+ L+L  +D  K I
Sbjct: 1   IPVVIEQTSRGERSY---DIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDI 57

Query: 137 YLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNR 196
           YLY+N+ G        G  +   AI D M ++K  + T+ +G A     ++  +GAKG R
Sbjct: 58  YLYVNTPG--------GSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKR 109

Query: 197 AALPSSTIMIKQ 208
             LP++  MI Q
Sbjct: 110 FMLPNAEYMIHQ 121

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} Length = 190

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

 Score = 84.8 bits (209), Expect = 7e-21
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 9/117 (7%)

Query: 92  PPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEK 151
              D+  + +K RI+YL         + ++++ LYL   +    I +YINS G       
Sbjct: 7   MKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNIN-HNDIKIYINSPGG------ 59

Query: 152 LGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208
                E  AI D+  Y+K  I T+  G     A+++L +G KG R +LP+  IMI Q
Sbjct: 60  --SINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQ 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	100.0
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	100.0
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	100.0
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	100.0
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	94.6
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	94.35
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	94.0
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	93.98
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	93.31
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	92.53
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	90.21
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	90.08
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	89.97
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	89.71
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	89.4
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	89.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	88.51
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	88.2
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	86.53
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	86.18
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	86.12
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	84.15
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	82.05

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=3.3e-44  Score=308.57  Aligned_cols=166  Identities=34%  Similarity=0.487  Sum_probs=133.5

Q ss_pred             CeeeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCcccc
Q 025057           75 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY  154 (258)
Q Consensus        75 ~~v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~  154 (258)
                      |+||+++|.+.   .+++++||||+||++|||||+|+|+++++++++++|+||+.+++++||+|||||||        |+
T Consensus         1 p~~p~~~~~~~---~~~~~~Di~s~l~~~Riifl~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G--------G~   69 (193)
T d1tg6a1           1 PLIPIVVEQTG---RGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG--------GV   69 (193)
T ss_dssp             CCCCBCC------------CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BC
T ss_pred             CCCCEEEeecC---CCchhhhHhHHHhccCEEEECCEEchHHHHHHHHHHHHhcccCCCcEEEEEeecCc--------cc
Confidence            46888888652   23567899999999999999999999999999999999999999999999999999        89


Q ss_pred             HhhHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHHHHHHH
Q 025057          155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNSVKLNV  231 (258)
Q Consensus       155 v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~~~~nv  231 (258)
                      |++|++|||+|++++++|+|+|.|+|||||++|++||++|+|+++|||++|||||+++.   ..+++...++++.....+
T Consensus        70 v~~g~~i~d~i~~~~~~V~tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~di~~~~~el~~~~~~i  149 (193)
T d1tg6a1          70 VTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQL  149 (193)
T ss_dssp             HHHHHHHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCceEEEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999842   346776666655444333


Q ss_pred             HhhccccccccCCcchhhhhc
Q 025057          232 LILSLPICSQLGGLKVKQQMS  252 (258)
Q Consensus       232 yil~~~~~s~l~~~~~~~~~~  252 (258)
                      .-+... +++..--+|++.|+
T Consensus       150 ~~i~a~-~Tg~~~~~i~~~~~  169 (193)
T d1tg6a1         150 YNIYAK-HTKQSLQVIESAME  169 (193)
T ss_dssp             HHHHHH-HHCCCHHHHHHHHS
T ss_pred             HHHHHH-HcCCCHHHHHHHhc
Confidence            322222 33333346666664

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=1.8e-43  Score=302.70  Aligned_cols=162  Identities=29%  Similarity=0.384  Sum_probs=127.4

Q ss_pred             eeEEeeecCCCCCCCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHh
Q 025057           77 ITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET  156 (258)
Q Consensus        77 v~~~i~~~~~~~~~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~  156 (258)
                      ||+|++++.   .+++..|||++||++|||||+|+|+++++++++++|+||+.+++++||+|||||||        |+|+
T Consensus         1 ~p~v~~~~~---~~~~~~di~s~Ll~~rii~l~g~I~~~~~~~~~~~l~~l~~~~~~~~I~l~InS~G--------G~v~   69 (192)
T d1y7oa1           1 IPVVIEQTS---RGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPG--------GSVS   69 (192)
T ss_dssp             CCEECC----------CEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECC--------BCHH
T ss_pred             CCEEEEeCC---CCcchhhhhhHHhccCEEEECCEEchHHHHHHHHHHHHhhhhcccCceeeeecCCC--------CCHH
Confidence            688887653   23667899999999999999999999999999999999999999999999999999        8999


Q ss_pred             hHHHHHHHhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCchhhH-----HHHHH---HHHHHHHH
Q 025057          157 EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTGIC-----LLKSS---LTWLNSVK  228 (258)
Q Consensus       157 aGlAIYDtm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~~~~-----~le~~---l~~L~~~~  228 (258)
                      +|++|||+|++++++|+|+|.|+|||||++|++||++|+|+++|||++|||||+++..+     +++..   +.++++..
T Consensus        70 ~glai~d~i~~~~~~v~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i  149 (192)
T d1y7oa1          70 AGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTL  149 (192)
T ss_dssp             HHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcceEEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999985333     22222   33333444


Q ss_pred             HHHHhhccccccccCCcchhhhhcc
Q 025057          229 LNVLILSLPICSQLGGLKVKQQMSK  253 (258)
Q Consensus       229 ~nvyil~~~~~s~l~~~~~~~~~~~  253 (258)
                      ..+|..    +++..--+|++.|++
T Consensus       150 ~~i~~~----~tg~~~~~i~~~~~r  170 (192)
T d1y7oa1         150 EKILAE----NSGQSMEKVHADAER  170 (192)
T ss_dssp             HHHHHH----HHTCCHHHHHHHHHS
T ss_pred             HHHHHH----HhCCCHHHHHHhhcC
Confidence            444432    344444467766653

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.6e-39  Score=274.81  Aligned_cols=151  Identities=28%  Similarity=0.357  Sum_probs=123.3

Q ss_pred             CChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCEE
Q 025057           94 PDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIF  173 (258)
Q Consensus        94 ~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V~  173 (258)
                      .+||++||++|||||+|+||++++++++++|++|+.+++.+||+|||||||        |+|++|++|||+|++++++|+
T Consensus         4 ~~i~~~l~~~rii~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G--------G~v~~gl~i~d~i~~~~~~v~   75 (179)
T d2cbya1           4 DSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG--------GSISAGMAIYDTMVLAPCDIA   75 (179)
T ss_dssp             HHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BCHHHHHHHHHHHHHCSSCEE
T ss_pred             cHHHHHHHhCCEEEECCEECHHHHHHHHHHHHHHhccCCCCeEEEEeeCCC--------CCHHHHHHHHHHHHhhcccee
Confidence            369999999999999999999999999999999999999999999999999        899999999999999999999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHHHHHHHHhhccccccccCCcchhhh
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNSVKLNVLILSLPICSQLGGLKVKQQ  250 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~~~~nvyil~~~~~s~l~~~~~~~~  250 (258)
                      |+|.|.|+|||++|+++|+||+|+++|||++|||||+++.   ..+++...++++.....+..+ +..+++..--+|++.
T Consensus        76 t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i-~a~~tg~~~~~i~~~  154 (179)
T d2cbya1          76 TYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRL-NAEFTGQPIERIEAD  154 (179)
T ss_dssp             EEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHH
T ss_pred             eehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHh
Confidence            9999999999999999999999999999999999998742   235555555544333333222 233444444567766


Q ss_pred             hcc
Q 025057          251 MSK  253 (258)
Q Consensus       251 ~~~  253 (258)
                      |++
T Consensus       155 ~~~  157 (179)
T d2cbya1         155 SDR  157 (179)
T ss_dssp             HHT
T ss_pred             hcC
Confidence            653

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-39  Score=271.55  Aligned_cols=130  Identities=38%  Similarity=0.587  Sum_probs=119.8

Q ss_pred             CCCCCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccC
Q 025057           90 EQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK  169 (258)
Q Consensus        90 ~~~~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik  169 (258)
                      ++|.+||||+|+++|||||+|+|++++++.++++|++|+.+++++||+|||||||        |+|++|++|||+|++++
T Consensus         3 ~~~~~di~s~L~~~riI~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G--------G~v~~g~~i~d~i~~~~   74 (183)
T d1yg6a1           3 GERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIK   74 (183)
T ss_dssp             SCCCCBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BCHHHHHHHHHHHHHSS
T ss_pred             ccchhhHhHHHhccCEEEECCEECHHHHHHHHHHHHHhhhhccCCceEEEEeCCC--------ccHHHHHHHHHHHHhCC
Confidence            4789999999999999999999999999999999999999999999999999999        89999999999999999


Q ss_pred             CCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCch---hhHHHHHHHHHHHHH
Q 025057          170 PPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDT---GICLLKSSLTWLNSV  227 (258)
Q Consensus       170 ~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~---~~~~le~~l~~L~~~  227 (258)
                      ++|+|+|.|.|||||++|++||+||+|++.|||++|||||+++   ...+++...++++..
T Consensus        75 ~~v~tv~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~  135 (183)
T d1yg6a1          75 PDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKV  135 (183)
T ss_dssp             SCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999974   234666665554433

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=6.5e-37  Score=261.49  Aligned_cols=150  Identities=25%  Similarity=0.395  Sum_probs=122.2

Q ss_pred             CCChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCCCCccccHhhHHHHHHHhhccCCCE
Q 025057           93 PPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPI  172 (258)
Q Consensus        93 ~~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~~~~~G~v~aGlAIYDtm~~ik~~V  172 (258)
                      ..|++++||++|||||+|+||+++++++++||++|+.++ .+||+|||||||        |+|++|++|||+|++++++|
T Consensus         8 ~~d~~~~l~~~rii~l~g~Id~~~~~~~i~~l~~l~~~~-~~~I~l~INS~G--------G~v~~g~ai~d~i~~~~~~v   78 (190)
T d2f6ia1           8 KKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNIN-HNDIKIYINSPG--------GSINEGLAILDIFNYIKSDI   78 (190)
T ss_dssp             SHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHC-CSCEEEEEEECC--------BCHHHHHHHHHHHHHSSSCE
T ss_pred             hhhHHHHHHcCcEEEECCeeCHHHHHHHHHHHHHHhccC-CCCeEEEEeCch--------hhhhHHHHHHHHHHhhCCce
Confidence            579999999999999999999999999999999999877 578999999999        89999999999999999999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCchh---hHHHHHHHHHHHHHHHHHHhhccccccccCCcchhh
Q 025057          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGDTG---ICLLKSSLTWLNSVKLNVLILSLPICSQLGGLKVKQ  249 (258)
Q Consensus       173 ~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~~~---~~~le~~l~~L~~~~~nvyil~~~~~s~l~~~~~~~  249 (258)
                      +|+|.|.|+|||++|+++|++|+|+++||+++|+|||+++.   ..+++...++++.....+..+..+ .++..--+|.+
T Consensus        79 ~tv~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~-~tg~~~~~i~~  157 (190)
T d2f6ia1          79 QTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSS-FTNQTVETIEK  157 (190)
T ss_dssp             EEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHH-HHCCCHHHHHH
T ss_pred             EEEEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHH
Confidence            99999999999999999999999999999999999999843   236665556655544444332222 33333345655


Q ss_pred             hhc
Q 025057          250 QMS  252 (258)
Q Consensus       250 ~~~  252 (258)
                      .|+
T Consensus       158 ~~~  160 (190)
T d2f6ia1         158 DSD  160 (190)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            553

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.024  Score=50.38  Aligned_cols=109  Identities=18%  Similarity=0.228  Sum_probs=81.2

Q ss_pred             CChHHhhhcCcEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCC
Q 025057           94 PDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPP  171 (258)
Q Consensus        94 ~Di~s~Ll~eRIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~  171 (258)
                      -|..+++.++     +|-++++....-.. ++.|... -.-||-.+|++||-..  .-|..|...++-...-.|-..+.|
T Consensus       119 ~~~~~~~~~n-----~G~~~p~~~rKa~r-~~~~a~~-~~~Pii~~vDtpG~~~g~~~E~~g~~~~~a~~~~~~~~~~vP  191 (316)
T d2f9ya1         119 RETKEKIRRN-----FGMPAPEGYRKALR-LMQMAER-FKMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVP  191 (316)
T ss_dssp             SSTTHHHHTG-----GGCCCHHHHHHHHH-HHHHHHH-TTCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSC
T ss_pred             CCcccccccc-----cccccHHHHHHHHH-HHHHHHH-cCcceEEEEecCcccCCcccccccHHHHHHHHHHHHHhCCCc
Confidence            3555555553     67778876555443 3333322 2579999999999543  334456677777777888889999


Q ss_pred             EEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057          172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       172 V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~~  211 (258)
                      +.+|++|.+.|-|++.++.++  +..|++||.+-+=.|.+
T Consensus       192 ~i~vv~g~g~~gga~a~~~~d--~v~m~~~a~~svispEg  229 (316)
T d2f9ya1         192 VVCTVIGEGGSGGALAIGVGD--KVNMLQYSTYSVISPEG  229 (316)
T ss_dssp             EEEEEEEEEEHHHHHTTCCCS--EEEECTTCEEESSCHHH
T ss_pred             eEEEEEhhhhchhhhhhhhhh--HHHHHhhhHHhhccchh
Confidence            999999999999999998884  68999999999877776

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.35  E-value=0.047  Score=46.95  Aligned_cols=102  Identities=16%  Similarity=0.184  Sum_probs=74.9

Q ss_pred             eCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHHH
Q 025057          108 LGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA  185 (258)
Q Consensus       108 Lgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAs  185 (258)
                      ++|.++.+.+..... ++.|-... +-||-..+|+||-..  ..|.-|-+-.|-.+..++...+.|..||++|-+.+.|.
T Consensus        77 ~~G~~~~~~a~Ka~~-fi~lc~~~-~iPli~l~d~pGf~~G~~~E~~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~  154 (263)
T d1xnya2          77 FAGCLDITASEKAAR-FVRTCDAF-NVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAY  154 (263)
T ss_dssp             GGGCBCHHHHHHHHH-HHHHHHHT-TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH
T ss_pred             ecCCcchhhHHHHHH-HHHHHHHh-CCceEEeecccccccchhHHHHhHHHHHHHHHHHHHccCCCeEEEEecCccccce
Confidence            568999988877665 44333222 579999999999332  22334667788899999999999999999999999666


Q ss_pred             HHHccC--CCCCeeecCCceEeEecCCc
Q 025057          186 LLLGAG--AKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       186 lILaAG--~kgkR~alPnSriMIHQP~~  211 (258)
                      ..+++.  .....++.|++++-+=.|.+
T Consensus       155 ~~m~~~~~~~d~~~awP~a~~gvm~pe~  182 (263)
T d1xnya2         155 DVMGSKHLGADLNLAWPTAQIAVMGAQG  182 (263)
T ss_dssp             HHTTCGGGTCSEEEECTTCEEESSCHHH
T ss_pred             eccCCcccCCcEEEEcchhhhhccCHHH
Confidence            554432  23578899999998876665

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.00  E-value=0.045  Score=47.13  Aligned_cols=103  Identities=17%  Similarity=0.177  Sum_probs=74.9

Q ss_pred             EeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHH
Q 025057          107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA  184 (258)
Q Consensus       107 fLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmA  184 (258)
                      |.+|.++.+.+.... +++.|-... +-||-..+|+||-..  .-|.-|-+-.|-.+..++...+.|..||.+|-+.+.|
T Consensus        81 ~~~G~~~~~~~~Ka~-rfi~lc~~~-~iPlv~l~dtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~  158 (271)
T d2a7sa2          81 HFAGCLDINASEKAA-RFVRTCDCF-NIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGA  158 (271)
T ss_dssp             TGGGCBCHHHHHHHH-HHHHHHHHT-TCCEEEEEEECCBCCCHHHHHHCHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHH
T ss_pred             ccCCCcCHHHHHHHH-HHHHHHHHh-CCceEEeechhhhhhhccHHHhhHHHHHHHHHHHHHhCCCCeEEEEeCCccchh
Confidence            457899999888755 455554333 579999999999432  1222345777889999999999999999999999977


Q ss_pred             HHHHccC--CCCCeeecCCceEeEecCCc
Q 025057          185 ALLLGAG--AKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       185 slILaAG--~kgkR~alPnSriMIHQP~~  211 (258)
                      ...+++.  .....++.|++++-+=.|.+
T Consensus       159 ~~am~~~~~~~d~~~AwP~A~igvMgpeg  187 (271)
T d2a7sa2         159 YCVMGSKDMGCDVNLAWPTAQIAVMGASG  187 (271)
T ss_dssp             HHHTTCGGGTCSEEEECTTCEEESSCHHH
T ss_pred             hhhhcccccccceEEEecceeEeecCHHH
Confidence            6665542  23567888999887655543

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=93.98  E-value=0.053  Score=46.57  Aligned_cols=102  Identities=17%  Similarity=0.199  Sum_probs=75.4

Q ss_pred             eCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHHH
Q 025057          108 LGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA  185 (258)
Q Consensus       108 Lgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmAs  185 (258)
                      .+|.++.+.+.....-+-..+..  +-||-..+|+||-..  .-|.-|-+-.|-.+..++...+.|..||++|.+++.|.
T Consensus        79 ~~G~~~~~~a~Kaa~fi~lc~~~--~iPli~l~DtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~  156 (264)
T d1vrga2          79 LAGVLDIDSSDKAARFIRFLDAF--NIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAY  156 (264)
T ss_dssp             GGGCBCHHHHHHHHHHHHHHHHT--TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH
T ss_pred             cccchhhhhHHHHHHHHHHHHHh--CCceEEEeecccccccHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHh
Confidence            46889998877766433333332  578999999999432  11223667788899999999999999999999999888


Q ss_pred             HHHccC--CCCCeeecCCceEeEecCCc
Q 025057          186 LLLGAG--AKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       186 lILaAG--~kgkR~alPnSriMIHQP~~  211 (258)
                      +-+++.  .....++.|++++-.=.|.+
T Consensus       157 ~am~~~~~~~d~~~awP~a~~~vm~pe~  184 (264)
T d1vrga2         157 IAMGSKHLGADMVLAWPSAEIAVMGPEG  184 (264)
T ss_dssp             HHTTCGGGTCSEEEECTTCEEESSCHHH
T ss_pred             hhccCCccCCCeeeeccceeEEecCHHH
Confidence            666642  23567888999988877765

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=93.31  E-value=0.07  Score=45.84  Aligned_cols=103  Identities=16%  Similarity=0.173  Sum_probs=75.5

Q ss_pred             EeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCCC--CCccccHhhHHHHHHHhhccCCCEEEEEeeeehhHH
Q 025057          107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA  184 (258)
Q Consensus       107 fLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~~--~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AASmA  184 (258)
                      +++|.++.+.+..... ++.|-.. -+-||-..+|+||=..+  -|.-|-+-.|-.+++++...+.|..||.+|.|++.|
T Consensus        78 ~~~G~~~~~~a~Kaar-fi~lc~~-~~iPlv~l~D~pGf~~G~~~E~~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~g  155 (264)
T d1on3a2          78 VMSGCLDINASDKAAE-FVNFCDS-FNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGS  155 (264)
T ss_dssp             SGGGCBCHHHHHHHHH-HHHHHHH-TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHH
T ss_pred             hcccccChHHHHHHHH-HHHHHHh-cCCceEEEeccccccccHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeccccCcc
Confidence            3477888887766554 4444333 25799999999994321  122456777889999999999999999999999988


Q ss_pred             HHHHccCC--CCCeeecCCceEeEecCCc
Q 025057          185 ALLLGAGA--KGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       185 slILaAG~--kgkR~alPnSriMIHQP~~  211 (258)
                      .+-++++.  ....++.|++++-.=.|.+
T Consensus       156 ~~am~g~~~~~d~~~aWP~A~~~vMg~Eg  184 (264)
T d1on3a2         156 YLAMCNRDLGADAVYAWPSAEIAVMGAEG  184 (264)
T ss_dssp             HHTTTCGGGTCSEEEECTTCEEESSCHHH
T ss_pred             ccccccccCChhheeeHHhhHhhhccHHH
Confidence            77776542  3457888999888876665

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.53  E-value=0.34  Score=39.88  Aligned_cols=90  Identities=12%  Similarity=0.120  Sum_probs=65.3

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHhh--------------------------HHHHHH
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE--------------------------AFAIYD  163 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~a--------------------------GlAIYD  163 (258)
                      .++.++..++...|..++.++.. . -|.|.+.|... .|   +++.+                          .-.+++
T Consensus        27 als~~m~~el~~~l~~~~~d~~v-~-~vvltg~~~~F~aG---~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (275)
T d1dcia_          27 AMNRAFWRELVECFQKISKDSDC-R-AVVVSGAGKMFTSG---IDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFT  101 (275)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTC-C-EEEEEESTTCSBCC---BCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCc-e-EEEEeccccccccC---ccHHHhhhcccccccccccchhhhhccchhhhHHHHH
Confidence            47888999999988888754322 2 24455554321 22   33322                          124778


Q ss_pred             HhhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          164 VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       164 tm~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      .|...+.||.+.+-|.|.+.|.-|++++  +-|++.++++|-+.
T Consensus       102 ~i~~~~kPvIaav~G~a~GgG~~lal~~--D~ria~~~a~f~~p  143 (275)
T d1dcia_         102 VIEKCPKPVIAAIHGGCIGGGVDLISAC--DIRYCTQDAFFQVK  143 (275)
T ss_dssp             HHHHSSSCEEEEECSEEETHHHHHHTTS--SEEEEETTCEEECC
T ss_pred             HHHhcCCCEEEEEeeEeehhhHHHHhhc--CchhhccCccccch
Confidence            8999999999999999999999999999  46999999987764

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=90.21  E-value=0.64  Score=37.46  Aligned_cols=96  Identities=11%  Similarity=0.062  Sum_probs=65.8

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CC-Cc--------------cccHhhHHHHHHHhhccCCCEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GG-EK--------------LGYETEAFAIYDVMGYVKPPIFT  174 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~-~~--------------~G~v~aGlAIYDtm~~ik~~V~T  174 (258)
                      -++.++..++...|..++.++..+  -+.|-+.|... .| .+              .........++..|...+.||.+
T Consensus        22 al~~~~~~el~~~l~~~~~d~~v~--~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa   99 (253)
T d1uiya_          22 PLSPEMALSLLQALDDLEADPGVR--AVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVA   99 (253)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCTTCC--EEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCce--EEEEecccccccccchhHHhhhccccCcccccchhhhhhhhhhHHhcCCCCEEE
Confidence            477888888888888776543222  23444544321 11 10              00112234456778889999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeEecCC
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQAG  210 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMIHQP~  210 (258)
                      .+-|.|.+.|..|+++++  -|++.+++++-++...
T Consensus       100 av~G~a~GgG~~lal~~D--~ria~~~a~~~~~e~~  133 (253)
T d1uiya_         100 AVNGPAVAGGAGLALACD--LVVMDEEARLGYTEVK  133 (253)
T ss_dssp             EECSCEETHHHHHHHTSS--EEEEETTCEEECCHHH
T ss_pred             EeCeEEehhhHHHHhhhh--hhhhhhhhHHhhhhcc
Confidence            999999999999999995  7999999999876643

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=90.08  E-value=0.22  Score=41.06  Aligned_cols=96  Identities=10%  Similarity=0.032  Sum_probs=66.5

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCC-C-CC----Cc--------cccHhhHHHHHHHhhccCCCEEEEEe
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-K-GG----EK--------LGYETEAFAIYDVMGYVKPPIFTLCV  177 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~-~-~~----~~--------~G~v~aGlAIYDtm~~ik~~V~Ti~~  177 (258)
                      ++.++...+...|..++.++..+  .+.|.|.|+. . .|    +.        .+.......++..|...+.||.+.+-
T Consensus        27 l~~~~~~~l~~~l~~~~~d~~v~--~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~  104 (249)
T d1sg4a1          27 LSLEFLTELVISLEKLENDKSFR--GVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAIN  104 (249)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCC--EEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcc--EEEEEeccceeEecccccccccccccccccccchhhHHHHHhhhcCccccchhhc
Confidence            67788888888887776433222  2444554431 1 11    00        11122334577778888999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCceEeEecCCc
Q 025057          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQAGD  211 (258)
Q Consensus       178 G~AASmAslILaAG~kgkR~alPnSriMIHQP~~  211 (258)
                      |.|.+.|.-|++++  +.|++.+++++.+..|..
T Consensus       105 G~a~GgG~~lal~~--D~~ia~~~a~f~~~~pe~  136 (249)
T d1sg4a1         105 GACPAGGCLVALTC--DYRILADNPRYCIGLNET  136 (249)
T ss_dssp             EEBCHHHHHHHTTS--SEEEEECCTTCCBSCCGG
T ss_pred             cccccccccccccc--ccceeecccccccccccc
Confidence            99999999999999  579999999998877764

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=89.97  E-value=0.34  Score=40.09  Aligned_cols=95  Identities=13%  Similarity=0.001  Sum_probs=65.6

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH-----------------hhHHHHHHHhhccCCCE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE-----------------TEAFAIYDVMGYVKPPI  172 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v-----------------~aGlAIYDtm~~ik~~V  172 (258)
                      -++.++..++...|..++.++..+  -+.|.+.|... .|-.+.++                 .....+++.|..++.||
T Consensus        26 al~~~~~~el~~~l~~~~~d~~i~--~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv  103 (269)
T d1nzya_          26 ALSVKAMQEVTDALNRAEEDDSVG--AVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPV  103 (269)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCC--EEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCce--EEEEeCCcccccchhhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhcchh
Confidence            468888888888888877543222  33445555332 22111111                 11234666778899999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCceEeEecC
Q 025057          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQA  209 (258)
Q Consensus       173 ~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQP  209 (258)
                      ...+-|.|.+.|..|++++  +.|++.+++++.+...
T Consensus       104 Iaav~G~a~GgG~~lal~~--D~ria~~~a~~~~~~~  138 (269)
T d1nzya_         104 LAAINGVAAGGGLGISLAS--DMAICADSAKFVCAWH  138 (269)
T ss_dssp             EEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHH
T ss_pred             ehhhhhhcCCCceeeeecc--cHhhhhhhhhhccccc
Confidence            9999999999999999999  4799999998887553

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=89.71  E-value=0.46  Score=38.56  Aligned_cols=90  Identities=11%  Similarity=0.175  Sum_probs=63.4

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCC-C-CCCccc-------------cHhhHHHHHHHhhccCCCEEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTT-K-GGEKLG-------------YETEAFAIYDVMGYVKPPIFTL  175 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~-~-~~~~~G-------------~v~aGlAIYDtm~~ik~~V~Ti  175 (258)
                      ++.++...+...+..++.++   +|. +.|-|.|+. . .|-.+.             .......++..|..++.||...
T Consensus        24 l~~~~~~~l~~~l~~~~~d~---~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaa  100 (230)
T d2a7ka1          24 FSRTLETSVKDALARANADD---SVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAA  100 (230)
T ss_dssp             CCHHHHHHHHHHHHHHHHCT---TCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCC---cccccceeccchhhhhhhcccccccccccccccccchhhhhhhhhcccchhcceeee
Confidence            67888888888887776533   343 444554532 1 221100             0123455678888999999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       176 ~~G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      +-|.|.+.|.-|++++  +.|++.++++|-+
T Consensus       101 v~G~a~GgG~~lal~~--D~~ia~~~a~f~~  129 (230)
T d2a7ka1         101 VDGYAIGMGFQFALMF--DQRLMASTANFVM  129 (230)
T ss_dssp             ECSEEETHHHHHHTTS--SEEEEETTCEEEC
T ss_pred             cccccccccccchhcc--chhhccccchhhh
Confidence            9999999999999999  5799999998765

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=89.40  E-value=0.53  Score=40.84  Aligned_cols=86  Identities=19%  Similarity=0.159  Sum_probs=63.4

Q ss_pred             cEEEeCceeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CCCccccHhhHHHHHHHhhccCCCEEEEEeeeeh
Q 025057          104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAW  181 (258)
Q Consensus       104 RIIfLgg~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~~~~G~v~aGlAIYDtm~~ik~~V~Ti~~G~AA  181 (258)
                      .....+|.|+.+.+..... ++.|-... +-||-..+|+||-..  .-|.-|-+-.|-.+..++...+.|..||++|.++
T Consensus        91 ~~~~~~G~l~~~~a~K~~r-fi~lc~~~-~iPlv~l~D~pGf~~g~~~E~~g~~r~ga~~~~a~~~~~VP~isvi~r~~~  168 (299)
T d1pixa3          91 GSVGIGGKLYRQGLVKMNE-FVTLCARD-RLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGT  168 (299)
T ss_dssp             TCCEETTEECHHHHHHHHH-HHHHHHHT-TCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEE
T ss_pred             CCcCCCCccCHHHHHHHHH-HHHHHHHc-CCeEEEEEeCCCcccchHHHhhhHHHHHHHHHHHHHhhcceeEEEEecccc
Confidence            3346799999998877765 33333322 468999999999221  1133467778888899999999999999999999


Q ss_pred             hHHHHHHccC
Q 025057          182 GEAALLLGAG  191 (258)
Q Consensus       182 SmAslILaAG  191 (258)
                      +.|.+.+++.
T Consensus       169 G~a~~am~g~  178 (299)
T d1pixa3         169 AAAHYVLGGP  178 (299)
T ss_dssp             TTHHHHTTCT
T ss_pred             cccccccccC
Confidence            9887765543

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.00  E-value=0.92  Score=37.32  Aligned_cols=93  Identities=16%  Similarity=0.136  Sum_probs=64.9

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCC-C-CCCc---cc---------cHhhHHHHHHHhhccCCCEEEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-K-GGEK---LG---------YETEAFAIYDVMGYVKPPIFTLC  176 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~-~-~~~~---~G---------~v~aGlAIYDtm~~ik~~V~Ti~  176 (258)
                      .++.++.+.+...|..++.++..+  -+.|-+.|+. . .|-.   ++         .......++..|..++.||...+
T Consensus        29 al~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav  106 (266)
T d1hzda_          29 SLSKNLIKMLSKAVDALKSDKKVR--TIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAI  106 (266)
T ss_dssp             CBCTTHHHHHHHHHHHHHHCSSCS--EEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCcc--eEEEeccccccccccccccccccccchhhhhhhhHHHHHHHHHhcCCccccccc
Confidence            478888999998888887654333  2333443321 1 1111   00         12344567888889999999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       177 ~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      -|.|.+.|.-|+++++  .|++.++++|-+-
T Consensus       107 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~p  135 (266)
T d1hzda_         107 DGLALGGGLELALACD--IRVAASSAKMGLV  135 (266)
T ss_dssp             SEEEETHHHHHHHHSS--EEEEETTCEEECC
T ss_pred             ccccccccceeccccc--eeeecCCcEEeec
Confidence            9999999999999994  6999999998653

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.51  E-value=0.25  Score=40.17  Aligned_cols=93  Identities=11%  Similarity=0.075  Sum_probs=62.0

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCcccc----------HhhHHHHHHHhhccCCCEEEEEeee
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGY----------ETEAFAIYDVMGYVKPPIFTLCVGN  179 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~----------v~aGlAIYDtm~~ik~~V~Ti~~G~  179 (258)
                      -++.++..++...|-.++.++..+  -+.|.+.|+.. -|-.+..          ......+++.|...+.||...+-|.
T Consensus        30 al~~~~~~~l~~~l~~~~~d~~v~--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~  107 (260)
T d1mj3a_          30 ALCNGLIEELNQALETFEEDPAVG--AIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGY  107 (260)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCC--EEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEEECSE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCcc--eEEEecccccccccchhhhhhccchhhhhHHHHHHHHHHhccCCCeEEEEEcCe
Confidence            367888888888887777644332  23445544321 2211010          1112234567778888999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          180 AWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       180 AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      |.+.|..|.++++  -|++.++++|.+-
T Consensus       108 a~GgG~~lal~~D--~~ia~~~a~f~~p  133 (260)
T d1mj3a_         108 ALGGGCELAMMCD--IIYAGEKAQFGQP  133 (260)
T ss_dssp             EETHHHHHHHHSS--EEEEETTCEEECG
T ss_pred             EeHHHHHHHHHCC--EEEEcCCCEEECc
Confidence            9999999999995  6999999998773

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.20  E-value=0.58  Score=38.24  Aligned_cols=92  Identities=17%  Similarity=0.114  Sum_probs=64.8

Q ss_pred             eChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccHh----------------hHHHHHHHhhccCCCEEE
Q 025057          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET----------------EAFAIYDVMGYVKPPIFT  174 (258)
Q Consensus       112 Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v~----------------aGlAIYDtm~~ik~~V~T  174 (258)
                      ++.++...+...|..++.++   .+.+.+.+.|... .|-.+..+.                ....++..|...+.||.+
T Consensus        27 ls~~~~~~l~~~l~~~~~d~---~v~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa  103 (245)
T d2f6qa1          27 INTEMYHEIMRALKAASKDD---SIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIA  103 (245)
T ss_dssp             BCHHHHHHHHHHHHHHHHSS---CSEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCC---ceEEeecCCCccccCCccchhhhcccccccccccchhhhHHHHHHhhhhhcCCceEE
Confidence            77788888888888776533   2457776666432 221111111                012466778889999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      .+-|.|.+.|.-|++++  +.|++.++++|.+-.
T Consensus       104 ~v~G~a~GgG~~la~~~--D~~ia~~~a~f~~pe  135 (245)
T d2f6qa1         104 VVNGPAVGISVTLLGLF--DAVYASDRATFHTPF  135 (245)
T ss_dssp             EECSCEETHHHHGGGGC--SEEEEETTCEEECCT
T ss_pred             EECCccccccccchhhh--hhhhhhccCeEeccc
Confidence            99999999999999999  479999999987744

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=86.53  E-value=1.8  Score=35.33  Aligned_cols=92  Identities=18%  Similarity=0.290  Sum_probs=63.6

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC--CC----C-------ccccHhhHHHHHHHhhccCCCEEEEEe
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GG----E-------KLGYETEAFAIYDVMGYVKPPIFTLCV  177 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~--~~----~-------~~G~v~aGlAIYDtm~~ik~~V~Ti~~  177 (258)
                      -++.++...+...|..++. + +-..-+..-+.||..  .|    +       ..........+++.|..++.||...+-
T Consensus        27 al~~~~~~~l~~al~~~~~-~-~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~  104 (261)
T d1ef8a_          27 ALSKVFIDDLMQALSDLNR-P-EIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVE  104 (261)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-T-TCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHhC-C-CCEEEEEeccccchhhcccccccccccCCccccccccchhhhHHHHHhCchhhhhccc
Confidence            3677888888888887752 3 222333333334310  11    0       111233456889999999999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCceEeE
Q 025057          178 GNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (258)
Q Consensus       178 G~AASmAslILaAG~kgkR~alPnSriMI  206 (258)
                      |.|.+.|..|++++  +.|++.++++|-+
T Consensus       105 G~a~GgG~~lal~c--D~ria~~~a~~~~  131 (261)
T d1ef8a_         105 GSVWGGAFEMIMSS--DLIIAASTSTFSM  131 (261)
T ss_dssp             SEEETHHHHHHHHS--SEEEEETTCEEEC
T ss_pred             ccccchhhhhhhhh--hhhhhhHhHHHhh
Confidence            99999999999999  4799999998754

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.18  E-value=1.4  Score=36.09  Aligned_cols=92  Identities=16%  Similarity=0.113  Sum_probs=63.7

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH----------------hhHHHHHHHhhccCCCEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE----------------TEAFAIYDVMGYVKPPIF  173 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v----------------~aGlAIYDtm~~ik~~V~  173 (258)
                      .++.++...+...|-.++.+ +.+  -+.|.+.|... .|-.++.+                .....++..|...+.||.
T Consensus        26 als~~~~~el~~al~~~~~d-~~~--~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~I  102 (258)
T d2fw2a1          26 ALNTEVIKEMVNALNSAAAD-DSK--LVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIV  102 (258)
T ss_dssp             CBCHHHHHHHHHHHHHHHHS-SCS--EEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHHHcC-CCE--EEEEecCccccccccccchhhhcccccccchhhHHHHHHHHHHHhhhccceeee
Confidence            46778888888888777653 333  35566666432 22111111                112345667888899999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCceEeEe
Q 025057          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (258)
Q Consensus       174 Ti~~G~AASmAslILaAG~kgkR~alPnSriMIH  207 (258)
                      ..+-|.|.+.|..|+++++  -|++.++++|-+.
T Consensus       103 aav~G~a~GgG~~lal~~D--~~ia~~~a~f~~p  134 (258)
T d2fw2a1         103 VSVNGPAIGLGASILPLCD--LVWANEKAWFQTP  134 (258)
T ss_dssp             EEECSCEETHHHHTGGGSS--EEEEETTCEEECC
T ss_pred             eeccccccccccccccccc--ccceecccceeec
Confidence            9999999999999999994  6999999987653

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=86.12  E-value=2.1  Score=35.07  Aligned_cols=91  Identities=13%  Similarity=0.037  Sum_probs=65.1

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH-----------------hhHHHHHHHhhccCCCE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE-----------------TEAFAIYDVMGYVKPPI  172 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v-----------------~aGlAIYDtm~~ik~~V  172 (258)
                      .++.++.+++...|..++.++..+  -+.|.+.|... .|   +|+                 .....++..|...+.||
T Consensus        32 al~~~m~~el~~~~~~~~~d~~vr--~vvl~g~g~~FsaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv  106 (263)
T d1wz8a1          32 AMPPALHRGLARVWRDLEAVEGVR--AVLLRGEGGVFSAG---GSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPV  106 (263)
T ss_dssp             CBCHHHHHHHHHHHHHHTTCTTCS--EEEEEEGGGCCBCC---BCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCCe--EEEEeccccccccc---chhhhhhhhcccccccccchhhhhHHHHHhhhhhcce
Confidence            467788888998888777544333  23345555332 22   222                 12345666788889999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       173 ~Ti~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      ...+-|.|.+.|.-|+++++  -|++.++++|-+..
T Consensus       107 Ia~v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe  140 (263)
T d1wz8a1         107 VAAVEKVAVGAGLALALAAD--IAVVGKGTRLLDGH  140 (263)
T ss_dssp             EEEECSEEETHHHHHHHHSS--EEEEETTCEEECCH
T ss_pred             eeeccccccccccccccccc--cccccccccccccc
Confidence            99999999999999999994  69999999986644

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=84.15  E-value=1.9  Score=36.48  Aligned_cols=94  Identities=16%  Similarity=0.070  Sum_probs=63.7

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEEEEEecCCCCC-CCCccccH---------------hhHHHHHHHhhccCCCEEE
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT  174 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~LyINSpGg~~-~~~~~G~v---------------~aGlAIYDtm~~ik~~V~T  174 (258)
                      .++.++...+...|..++.++..+  -+.|.+.|... .|-.+..+               .....++..|...+.||.+
T Consensus        31 al~~~~~~el~~al~~~~~d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  108 (310)
T d1wdka4          31 KFNRLTLNELRQAVDAIKADASVK--GVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVA  108 (310)
T ss_dssp             BCCHHHHHHHHHHHHHHHHCTTCC--EEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCCccchhhhhhhhhcccccchhhhhhhhHHHHHHHHhhcCCcccee
Confidence            467788888888888777543222  23444444221 12111111               0123567888899999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCceEeEec
Q 025057          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (258)
Q Consensus       175 i~~G~AASmAslILaAG~kgkR~alPnSriMIHQ  208 (258)
                      .+-|.|.+.|.-|++++  +.|++.++++|-+..
T Consensus       109 av~G~a~GgG~elal~c--D~ria~~~a~f~~pe  140 (310)
T d1wdka4         109 AINGIALGGGLEMCLAA--DFRVMADSAKIGLPE  140 (310)
T ss_dssp             EECSCEETHHHHHHHTS--SEEEEETTCEEECGG
T ss_pred             eccccccccccccchhh--hhhhccccceecccc
Confidence            99999999999999999  579999999876644

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.05  E-value=1.8  Score=35.36  Aligned_cols=91  Identities=12%  Similarity=0.082  Sum_probs=60.2

Q ss_pred             eeChhhHHHHHHHHHhccccCCCCcEE-EEEecCCCCC-CCCccc-----------------------cHhhHHHHHHHh
Q 025057          111 SFVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLG-----------------------YETEAFAIYDVM  165 (258)
Q Consensus       111 ~Idd~~a~~iiaqLL~L~~ed~~k~I~-LyINSpGg~~-~~~~~G-----------------------~v~aGlAIYDtm  165 (258)
                      -++.++..++...|..++.++   +|. +.|.+.|... .|--+.                       .+.....+++.|
T Consensus        28 a~~~~~~~el~~al~~~~~d~---~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  104 (266)
T d1pjha_          28 ALEGEDYIYLGELLELADRNR---DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAF  104 (266)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCT---TCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCC---CceEEEEeccccccccchhHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            467788888888888777543   343 3345544221 110000                       122333477888


Q ss_pred             hccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCC-ceEeE
Q 025057          166 GYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS-STIMI  206 (258)
Q Consensus       166 ~~ik~~V~Ti~~G~AASmAslILaAG~kgkR~alPn-SriMI  206 (258)
                      ...+.||...+-|.|.+.|..|+++++  -|++.+. +.+.+
T Consensus       105 ~~~~kP~IAav~G~a~GgG~~lal~~D--~~ia~~~~~~~~~  144 (266)
T d1pjha_         105 IKHSKVLICCLNGPAIGLSAALVALCD--IVYSINDKVYLLY  144 (266)
T ss_dssp             HHCCSEEEEEECSCEEHHHHHHHHHSS--EEEESSTTCEEEC
T ss_pred             Hhcchhhhhhhhcccccccccchhccc--hhhhhhccccccc
Confidence            999999999999999999999999994  6888654 56553