Citrus Sinensis ID: 025059

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRHADECWSKSD
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHccccEEEEEEccHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHccccccEEEEccccccccccHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHHHcccccccccccccccccccEEEEccccccccccccEEEEEEEEccccccccccccHHHHHHHHHHcccEEEEEccHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHcccccccccEEEHHHHHHHHcccHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHcccHHccccccccccccccccccEEEEEEccccccccccccEEEEEHHHHHcccccEEEcHHHHHHHHHHcccEEEEEccHHHHHHHHcccHHHHcccc
Coil and Loop (DISEMBL)
msvlpiprselthhRLYEFAKTALIKiyshpyvtvcdlycgagvdvdKWETALIANYIgidvatsgigearDTWENQRKNFIAEffeadpcaenFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSllkpggyflgitpdsSTIWAKYQKNVEAyhnrsssmkpnlvpncirsesyvITFEveeekfplfgkKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLnefyddnrhadecwsksd
Flexible Loop (DISEMBL)
msvlpiprseltHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHnrsssmkpnlvpncIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLnefyddnrhadecwsksd
Low Complexity Region (SEG)
MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRHADECWSKSD
Disordered region (IsUnstruct)
**********LTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHN*******NLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRH*********
Disordered Region (DISOPRED)
**********LTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR**********
Disordered Region (DISEMBL)
MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRHADECWSKSD
Disordered Region (DISPRO)
*SVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVE**************PNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRHADEC***SD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRHADECWSKSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
Q5HZ60	354	mRNA cap guanine-N7 methy	yes	no	0.953	0.694	0.693	1e-102
Q6K833	339	mRNA cap guanine-N7 methy	yes	no	0.899	0.684	0.716	1e-99
Q9VJQ4	427	mRNA cap guanine-N7 methy	yes	no	0.786	0.475	0.292	5e-23
Q6Z9U7	369	mRNA cap guanine-N7 methy	no	no	0.817	0.571	0.322	2e-22
Q9LHQ7	370	mRNA cap guanine-N7 methy	no	no	0.817	0.570	0.316	4e-20
Q1MTD3	400	mRNA cap guanine-N7 methy	yes	no	0.763	0.492	0.271	5e-19
Q9I8S2	402	mRNA cap guanine-N7 methy	N/A	no	0.786	0.504	0.274	1e-18
Q28FT4	405	mRNA cap guanine-N7 methy	yes	no	0.786	0.501	0.269	4e-18
P32783	436	mRNA cap guanine-N7 methy	yes	no	0.837	0.495	0.311	1e-17
Q6CKI0	426	mRNA cap guanine-N7 methy	yes	no	0.825	0.5	0.324	2e-17

>sp|Q5HZ60|MCES2_ARATH mRNA cap guanine-N7 methyltransferase 2 OS=Arabidopsis thaliana GN=At3g52210 PE=2 SV=1

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/248 (69%), Positives = 206/248 (83%), Gaps = 2/248 (0%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS   + + E +HHRL++FAKTA+I I++HPY TVC+LYCG   + DKWE A I +YIGI
Sbjct: 1   MSGFVVSKPEQSHHRLFDFAKTAIINIFAHPYATVCELYCGGAPETDKWEAAPIGHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
           D  +SGI   R+ WE+QRKN+  EFFEADP  ++FE Q+Q+K  QADLV C++HLQ+CFE
Sbjct: 61  DT-SSGISSVREAWESQRKNYDVEFFEADPSKDDFEIQLQKKLEQADLVSCWRHLQLCFE 119

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE ARRLL NV+ LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS + KPN+ PN IR
Sbjct: 120 TEESARRLLTNVACLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGA-KPNVFPNYIR 178

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFE+EEEKFPLFGK+YQLKF+ D ++E  CLVHFPSLIRLAREAGLE+VEIQ+L
Sbjct: 179 SESYMITFELEEEKFPLFGKRYQLKFSGDNASEDHCLVHFPSLIRLAREAGLEFVEIQSL 238

Query: 241 NEFYDDNR 248
            +FYDDNR
Sbjct: 239 TDFYDDNR 246

mRNA capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 5EC: 6

>sp|Q6K833|MCES2_ORYSJ mRNA cap guanine-N7 methyltransferase 2 OS=Oryza sativa subsp. japonica GN=Os02g0780600 PE=2 SV=1

 Score =  362 bits (929), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 169/236 (71%), Positives = 192/236 (81%), Gaps = 4/236 (1%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
           HHRLYEFAKTALIKI++ PY TVCDLYC  GVD DKW  A I +YIGID + SG+ +AR+
Sbjct: 6   HHRLYEFAKTALIKIFAFPYATVCDLYCDGGVDTDKWGDAQIGHYIGIDASASGVNDARE 65

Query: 73  TWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNV 132
            WE+++K F +EF E DP A++FE QMQEK  QAD+VCC QHLQ+CFE+EE A++LL NV
Sbjct: 66  LWESRKKLFTSEFIELDPSADDFEAQMQEKGIQADIVCCMQHLQLCFESEEHAQKLLNNV 125

Query: 133 SSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE 192
           SSLLKPGGYF+GI PDSSTIW KYQKNVEA HN+        VPN IRSE+YVITFEVEE
Sbjct: 126 SSLLKPGGYFVGIIPDSSTIWTKYQKNVEASHNKGLKT----VPNSIRSENYVITFEVEE 181

Query: 193 EKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR 248
           EKFP FGKKYQLKFAN+   E  CLVHFPS +RLAREAGLEYVEIQNL EFYDDNR
Sbjct: 182 EKFPFFGKKYQLKFANESMFENHCLVHFPSFMRLAREAGLEYVEIQNLTEFYDDNR 237

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q9VJQ4|MCES_DROME mRNA cap guanine-N7 methyltransferase OS=Drosophila melanogaster GN=l(2)35Bd PE=1 SV=2

 Score =  108 bits (269), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 23/226 (10%)

Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN--QRK-------NFIA 83
           + V D+ CG G D+ KWE A I++ I  D+A   + + +  +++  QR         F A
Sbjct: 137 LRVLDMCCGKGGDLLKWEKAAISHLICTDIAEVSVEQCQRRYQDILQRSEKSKFANKFTA 196

Query: 84  EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
           EFF  D        + ++ + Q +LV C      CFE+  +A  +++N +  LKPGG+F+
Sbjct: 197 EFFACDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCMMRNAAECLKPGGFFI 256

Query: 144 GITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQ 203
              PD+  I  +          R++        N +    Y I F+ E +  PLFG KYQ
Sbjct: 257 ATMPDAYEIIRRL---------RAAGPDARRFGNDV----YSIEFDCETDPLPLFGAKYQ 303

Query: 204 LKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRH 249
                 +    + LVHFP+L++L R+ GL+ ++     ++Y +N H
Sbjct: 304 FHLEGVVDC-PEFLVHFPTLVKLGRKYGLQLLKRSTFADYYKENLH 348

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q6Z9U7|MCES1_ORYSJ mRNA cap guanine-N7 methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os08g0180000 PE=2 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 121/242 (50%), Gaps = 31/242 (12%)

Query: 15  RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR--- 71
           +L  + K+ LI++Y+HP   V DL CG G D+ KW+ A +  Y+G+D+A   I +     
Sbjct: 68  KLNNWIKSVLIQLYAHPGDCVLDLACGKGGDLIKWDKAKVGYYVGVDIAEGSIKDCMTRY 127

Query: 72  --DTWENQRKNFIAEFFEADPCAENFETQMQEKANQA---DLVCCFQHLQMCFETEERAR 126
             DT + +RK F   F     CA+ +E ++ E   +    D+  C   L   + TE RAR
Sbjct: 128 NGDTDQQRRKKF--SFPARLICADCYEARLDEHLYEDAPFDICSCQFALHYSWSTEARAR 185

Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI 186
           + L NVS+LL+PGG F+G  PD++ I  + ++        +  M+         +  Y I
Sbjct: 186 QALANVSALLRPGGVFIGTMPDANVIIKRLRE--------TDGME-------FGNGVYWI 230

Query: 187 TF--EVEEEKFPL---FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN 241
           +F  E  E+KFP    FG KY+    + +    + +V F     LA E  LE V  +N +
Sbjct: 231 SFGEEYAEKKFPASRPFGIKYKFHLEDAVDC-PEWVVPFHLFKLLAEEYDLELVLTKNFH 289

Query: 242 EF 243
           EF
Sbjct: 290 EF 291

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q9LHQ7|MCES1_ARATH mRNA cap guanine-N7 methyltransferase 1 OS=Arabidopsis thaliana GN=At3g20650 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 114/243 (46%), Gaps = 32/243 (13%)

Query: 15  RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW 74
           +L  + K+ LI++Y+ P   V DL CG G D+ KW+ A I  Y+GID+A   I + R  +
Sbjct: 68  KLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSIEDCRTRY 127

Query: 75  EN------QRKNFIAEFFEADPCAENFETQMQ---EKANQADLVCCFQHLQMCFETEERA 125
                   +RK F   F     C + FE ++    E+    D+  C   +   + TE RA
Sbjct: 128 NGDADHHQRRKKF--SFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWTTEARA 185

Query: 126 RRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV 185
           RR L NVS+LL+PGG F+G  PD++ I  K  +  E                 I +  Y 
Sbjct: 186 RRALANVSALLRPGGVFIGTMPDANVIIKKL-REAEGLE--------------IGNSVYW 230

Query: 186 ITF--EVEEEKFPL---FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           I F  E  ++KF     FG +Y     + +    + +V F     LA E  LE V ++N 
Sbjct: 231 IRFGEEYSQKKFKSSSPFGIEYVFHLEDAVDC-PEWIVPFNVFKSLAEEYDLELVFVKNS 289

Query: 241 NEF 243
           +EF
Sbjct: 290 HEF 292

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q1MTD3|MCES_DANRE mRNA cap guanine-N7 methyltransferase OS=Danio rerio GN=rnmt PE=2 SV=1

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 24/221 (10%)

Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-------NFIAEF 85
           VTV DL CG G D+ KW+   I   +  D+A   I + +  + + R+        F AEF
Sbjct: 122 VTVLDLGCGKGGDLLKWKKGRIDKLVCADIAAVSIEQCQQRYNDVRRRGHPNDRTFSAEF 181

Query: 86  FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145
             AD   E    ++Q+   Q D+  C       FE+E +A  +L+N    L+PGG+F+G 
Sbjct: 182 ITADCSRELLSEKLQDPELQFDVCSCQFVYHYSFESESQADTMLRNACERLRPGGFFIGT 241

Query: 146 TPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLK 205
           TPD+  +  + +++                 N   +E + +TF+ + E +PLFG +Y   
Sbjct: 242 TPDAYELVKRLEESDS---------------NSFGNEVFSVTFQKKGE-YPLFGCQYDFS 285

Query: 206 FANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
               ++   + LV+FP  + +A++  +  V  +   EF+++
Sbjct: 286 LEGVVNV-PEFLVYFPLFVEMAKKYNMRLVYKKTFKEFFEE 325

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q9I8S2|MCES_XENLA mRNA cap guanine-N7 methyltransferase OS=Xenopus laevis GN=rnmt PE=2 SV=1

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 23/226 (10%)

Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN------FIAEFF 86
           +TV DL CG G D+ KW    I+  +  D+A   + +    +++ ++       F AEF 
Sbjct: 125 ITVLDLGCGKGGDLLKWRKGGISKLVCTDIADVSVKQCEQRYKDMKRKSRNERIFEAEFL 184

Query: 87  EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
            +D   E    +  +   + D+  C       FET E+A  +L+N    L PGG+F+G T
Sbjct: 185 TSDSTKELLSEKYIDPEIKFDICSCQFVYHYSFETYEQADTMLRNACERLCPGGFFIGTT 244

Query: 147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKF 206
           PD   +     K +EA              N   ++ Y +TFE ++ K+PLFG KY    
Sbjct: 245 PDGFELV----KRLEASDT-----------NSFGNDVYTVTFE-KKGKYPLFGCKYDFSL 288

Query: 207 ANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRHADE 252
              ++   + LV+FP L+ +A++  ++ +  +   EF+++    DE
Sbjct: 289 EEVVNV-PEFLVYFPVLVEMAKKYQMKLIYKKTFREFFEEKVKNDE 333

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q28FT4|MCES_XENTR mRNA cap guanine-N7 methyltransferase OS=Xenopus tropicalis GN=rnmt PE=2 SV=1

 Score = 91.7 bits (226), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 23/226 (10%)

Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN------FIAEFF 86
           + V DL CG G D+ KW    I+  +  D+A   + +  + +++ ++       F AEF 
Sbjct: 128 IAVLDLGCGKGGDLLKWRKGGISKLVCTDIADVSVKQCEERYKDLKRKSRNERVFEAEFL 187

Query: 87  EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
            AD   E    +  +   + D+  C       FET E+A  +L+N    L PGG+F+G T
Sbjct: 188 TADSTKELLSEKYNDPEIKFDICSCQFVYHYSFETYEQADMMLRNACERLCPGGFFIGTT 247

Query: 147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKF 206
           PD   +     K +EA              N   ++ Y + FE ++ K+PLFG KY    
Sbjct: 248 PDGFELV----KRLEASDT-----------NSFGNDVYTVKFE-KKGKYPLFGCKYDFSL 291

Query: 207 ANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRHADE 252
              ++   + LV+FP L+ +A++  ++ +  +   EF+++    DE
Sbjct: 292 EEVVNV-PEFLVYFPVLVEMAKKYQMKLIYKKTFREFFEEKVKNDE 336

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|P32783|MCES_YEAST mRNA cap guanine-N7 methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ABD1 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 104/231 (45%), Gaps = 15/231 (6%)

Query: 21  KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK- 79
           K  LI  Y+ P   V +L CG G D+ K+  A I+ +IGID++ + I EA   + + R  
Sbjct: 154 KYMLIDKYTKPGDVVLELGCGKGGDLRKYGAAGISQFIGIDISNASIQEAHKRYRSMRNL 213

Query: 80  NFIAEFFEADPCAENFETQMQEKAN---QADLVCCFQHLQMCFETEERARRLLQNVSSLL 136
           ++       D   E+    ++   +     D+V     L   FETEE+ARR L NV+  L
Sbjct: 214 DYQVVLITGDCFGESLGVAVEPFPDCRFPCDIVSTQFCLHYAFETEEKARRALLNVAKSL 273

Query: 137 KPGGYFLGITPDSSTI---WAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEE 193
           K GG+F G  PDS  I     K+ K VE     +S  K     N  +   Y  T      
Sbjct: 274 KIGGHFFGTIPDSEFIRYKLNKFPKEVEKPSWGNSIYKVTFENNSYQKNDYEFT------ 327

Query: 194 KFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFY 244
               +G+ Y     + I    + +V F +L  LA E GLE V     N+F+
Sbjct: 328 --SPYGQMYTYWLEDAIDNVPEYVVPFETLRSLADEYGLELVSQMPFNKFF 376

Responsible for methylating the 5'-cap structure of mRNAs.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q6CKI0|MCES_KLULA mRNA cap guanine-N7 methyltransferase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ABD1 PE=3 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 107/234 (45%), Gaps = 21/234 (8%)

Query: 21  KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK- 79
           K  LI  ++     V +L CG G D+ K+  A I+ +IGID++ + I EA   + + +  
Sbjct: 151 KYILIDKFTRAGDVVLELACGKGGDLRKYGAAGISQFIGIDISNASITEALKRYHSMKNL 210

Query: 80  NFIAEFFEADPCAENFETQMQ---EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLL 136
            +       D   E+    ++   E     D+V C   L   FETEE+ARR+L NV   L
Sbjct: 211 EYQVILITGDCFGESLGVAVESFPECRFPCDIVSCQFALHYAFETEEKARRMLLNVVKSL 270

Query: 137 KPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE---- 192
           K GGYF G  PDS  I  K  K  E      S  KP+   N I    Y +TF   E    
Sbjct: 271 KIGGYFFGTIPDSEFIRYKMNKIPE------SVEKPSW-GNSI----YKVTFSNNEYQKN 319

Query: 193 -EKFPL-FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFY 244
             +FP  FG+ Y     + I    + ++ F S   LA E G+E    +  NEF+
Sbjct: 320 GNEFPSPFGQMYTFWLEDAIDNVPEYVIPFESFRSLADEYGMELELQKGFNEFF 373

Responsible for methylating the 5'-cap structure of mRNAs.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
224109904	287	predicted protein [Populus trichocarpa]	0.961	0.864	0.814	1e-123
449449401	354	PREDICTED: mRNA cap guanine-N7 methyltra	0.961	0.700	0.770	1e-114
225449657	359	PREDICTED: mRNA cap guanine-N7 methyltra	0.961	0.690	0.742	1e-110
296090379	319	unnamed protein product [Vitis vinifera]	0.961	0.777	0.742	1e-110
356516035	346	PREDICTED: mRNA cap guanine-N7 methyltra	0.926	0.690	0.766	1e-109
356507590	359	PREDICTED: mRNA cap guanine-N7 methyltra	0.926	0.665	0.762	1e-108
255586607	258	mRNA (guanine-7-)methyltransferase, puta	0.856	0.856	0.786	1e-105
357463871	359	mRNA cap guanine-N7 methyltransferase [M	0.914	0.657	0.742	1e-103
42565855	354	mRNA cap guanine-N7 methyltransferase 2	0.953	0.694	0.693	1e-100
79314795	355	mRNA cap guanine-N7 methyltransferase 2	0.957	0.695	0.689	1e-100

>gi|224109904|ref|XP_002315350.1| predicted protein [Populus trichocarpa] gi|222864390|gb|EEF01521.1| predicted protein [Populus trichocarpa]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 202/248 (81%), Positives = 228/248 (91%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS  PIPR+E  HHRLYEFAK+A+IKI++HPY TVCDLYCG GVD++KW+ A I +YIGI
Sbjct: 1   MSGFPIPRTESAHHRLYEFAKSAIIKIFAHPYATVCDLYCGGGVDIEKWDAAQITHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
           DVA+SGI E ++TWE+ +KN+ A+FF+ADPC+ENFETQ+QEKANQADLVCC Q+LQ+CFE
Sbjct: 61  DVASSGISEVKETWESLKKNYTADFFQADPCSENFETQLQEKANQADLVCCLQNLQLCFE 120

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE AR+LL NV+SLLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS SMKPN+VPNCIR
Sbjct: 121 TEESARKLLHNVASLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGSMKPNIVPNCIR 180

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFEVEEEKFPLFGKKYQLKFA+DISAET CLVHFPSLIRLAREAGLEYVEIQNL
Sbjct: 181 SESYMITFEVEEEKFPLFGKKYQLKFAHDISAETHCLVHFPSLIRLAREAGLEYVEIQNL 240

Query: 241 NEFYDDNR 248
            EFYDDNR
Sbjct: 241 TEFYDDNR 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449401|ref|XP_004142453.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Cucumis sativus] gi|449513235|ref|XP_004164269.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Cucumis sativus]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/248 (77%), Positives = 214/248 (86%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS L  PR E THHRL +FAKTALIKI+SHPYVTVCDLYC  G D +KW+   I++YIGI
Sbjct: 1   MSQLVPPRGEWTHHRLCDFAKTALIKIFSHPYVTVCDLYCARGADAEKWDETQISHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
           D +TSGIG+ R+ WE+Q+K + AEFFE DPC EN ETQ+++K    D VCC QHLQMCFE
Sbjct: 61  DESTSGIGQMREAWESQKKAYTAEFFEVDPCVENIETQLKDKTETVDRVCCLQHLQMCFE 120

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEERARRLL NVS+LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS+ MKPN+VPNCIR
Sbjct: 121 TEERARRLLHNVSALLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSAGMKPNIVPNCIR 180

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+I+FEVEEEKFPLFGKKYQLKFAND SAET CLVHFPS IRLAREAGLEY+EIQNL
Sbjct: 181 SESYMISFEVEEEKFPLFGKKYQLKFANDPSAETHCLVHFPSFIRLAREAGLEYIEIQNL 240

Query: 241 NEFYDDNR 248
            EF+DD+R
Sbjct: 241 TEFFDDHR 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449657|ref|XP_002263006.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Vitis vinifera]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/249 (74%), Positives = 212/249 (85%), Gaps = 1/249 (0%)

Query: 1   MSVLPIPRS-ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIG 59
           M+ +P PR+ E THHRL+EFAKTALIKI+  PY TVCDLY GAG D DKW+ A I +YIG
Sbjct: 1   MTSIPAPRTAESTHHRLFEFAKTALIKIFVSPYATVCDLYAGAGSDADKWDEAQIGHYIG 60

Query: 60  IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCF 119
           IDV++SGI   ++ WE+QRK++ A+F+E DP  EN E  +Q+K N AD+VCC QHLQ+ F
Sbjct: 61  IDVSSSGISHTKEVWESQRKSYNADFYELDPSMENLELNLQDKCNTADVVCCLQHLQLGF 120

Query: 120 ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCI 179
           E E++ RRLL NV+SLLKPGGYF GITPDSSTIWAKYQKNVEAYHNR SSMKPN+VPNCI
Sbjct: 121 ENEDKGRRLLHNVASLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRGSSMKPNIVPNCI 180

Query: 180 RSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN 239
           RSESY+ITFEVEEEKFP FGKKYQLKF+ND SAET CLVHFPSLIRLAREAGLEYVEIQN
Sbjct: 181 RSESYMITFEVEEEKFPFFGKKYQLKFSNDTSAETYCLVHFPSLIRLAREAGLEYVEIQN 240

Query: 240 LNEFYDDNR 248
           L +FYDDNR
Sbjct: 241 LTDFYDDNR 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090379|emb|CBI40198.3| unnamed protein product [Vitis vinifera]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/249 (74%), Positives = 212/249 (85%), Gaps = 1/249 (0%)

Query: 1   MSVLPIPRS-ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIG 59
           M+ +P PR+ E THHRL+EFAKTALIKI+  PY TVCDLY GAG D DKW+ A I +YIG
Sbjct: 1   MTSIPAPRTAESTHHRLFEFAKTALIKIFVSPYATVCDLYAGAGSDADKWDEAQIGHYIG 60

Query: 60  IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCF 119
           IDV++SGI   ++ WE+QRK++ A+F+E DP  EN E  +Q+K N AD+VCC QHLQ+ F
Sbjct: 61  IDVSSSGISHTKEVWESQRKSYNADFYELDPSMENLELNLQDKCNTADVVCCLQHLQLGF 120

Query: 120 ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCI 179
           E E++ RRLL NV+SLLKPGGYF GITPDSSTIWAKYQKNVEAYHNR SSMKPN+VPNCI
Sbjct: 121 ENEDKGRRLLHNVASLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRGSSMKPNIVPNCI 180

Query: 180 RSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN 239
           RSESY+ITFEVEEEKFP FGKKYQLKF+ND SAET CLVHFPSLIRLAREAGLEYVEIQN
Sbjct: 181 RSESYMITFEVEEEKFPFFGKKYQLKFSNDTSAETYCLVHFPSLIRLAREAGLEYVEIQN 240

Query: 240 LNEFYDDNR 248
           L +FYDDNR
Sbjct: 241 LTDFYDDNR 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516035|ref|XP_003526702.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Glycine max]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/240 (76%), Positives = 206/240 (85%), Gaps = 1/240 (0%)

Query: 9   SELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIG 68
           S+ T  RLY+FAK ALI I+ HPY TVCDLYCG   D DKW  A I +YIGID  +SGI 
Sbjct: 2   SQPTQQRLYDFAKMALINIFVHPYATVCDLYCG-DADADKWAHAQIGHYIGIDAPSSGID 60

Query: 69  EARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRL 128
           + R+TWE  RK++ AEFFE DPC EN ET ++EK N  D+VCC QHLQ+CFETEE+AR+L
Sbjct: 61  QMRETWETHRKSYTAEFFELDPCTENIETHLEEKTNMTDVVCCLQHLQLCFETEEKARKL 120

Query: 129 LQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188
           L NVSSLLKPGGYFLGITPDSSTIWAKYQ+NVEAYHN+SSSMKPN+VPNCIR+E+Y+ITF
Sbjct: 121 LHNVSSLLKPGGYFLGITPDSSTIWAKYQRNVEAYHNKSSSMKPNIVPNCIRTENYMITF 180

Query: 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR 248
           EVEEEKFPLFGKKYQLKFAND+SAET CLVHFPS IRLAREAGLEYVEIQNL EFYDDNR
Sbjct: 181 EVEEEKFPLFGKKYQLKFANDVSAETYCLVHFPSFIRLAREAGLEYVEIQNLTEFYDDNR 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507590|ref|XP_003522547.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Glycine max]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/240 (76%), Positives = 207/240 (86%), Gaps = 1/240 (0%)

Query: 9   SELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIG 68
           S+ T  RLY+FAK ALI I++HPY TVCDLYCG   D DKW  A I +YIGID  +SGI 
Sbjct: 2   SQSTQQRLYDFAKMALINIFAHPYATVCDLYCG-DADADKWVDAQIGHYIGIDAPSSGIE 60

Query: 69  EARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRL 128
           + R+ WE  RK++ AEFFE DPC +N ET ++EK N AD+VCC QHLQ+CFETEE+AR+L
Sbjct: 61  QMREAWEIHRKSYTAEFFELDPCTKNTETHLEEKTNVADVVCCLQHLQLCFETEEKARKL 120

Query: 129 LQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188
           L NVSSLLKPGGYFLGITPDSSTIWAKYQ+NVEAYHN+SSSMKPN+VPNCIR+E+Y+ITF
Sbjct: 121 LHNVSSLLKPGGYFLGITPDSSTIWAKYQRNVEAYHNKSSSMKPNIVPNCIRTENYMITF 180

Query: 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR 248
           EVEEEKFPLFGKKYQLKFAND+SAET CLVHFPS IRLAREAGLEYVEIQNL EFYDDNR
Sbjct: 181 EVEEEKFPLFGKKYQLKFANDVSAETHCLVHFPSFIRLAREAGLEYVEIQNLTEFYDDNR 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586607|ref|XP_002533936.1| mRNA (guanine-7-)methyltransferase, putative [Ricinus communis] gi|223526091|gb|EEF28443.1| mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/229 (78%), Positives = 201/229 (87%), Gaps = 8/229 (3%)

Query: 4   LPIPRSELTHHRLYEFAKTALIKIYSHPYVTV--------CDLYCGAGVDVDKWETALIA 55
            PIPR+E THHRLYEFAK+ALIKI+ HPYVTV        CDLYCG  VD +KW+ A I 
Sbjct: 8   FPIPRTESTHHRLYEFAKSALIKIFVHPYVTVSALSLNSVCDLYCGGVVDAEKWDIAQIG 67

Query: 56  NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHL 115
           +Y+GIDV++SG+ E R+ WE+QRKN+ AEFFEADPC+E FE Q+QEKANQADLVCC Q+L
Sbjct: 68  HYVGIDVSSSGVSELREAWESQRKNYTAEFFEADPCSEIFEKQLQEKANQADLVCCLQNL 127

Query: 116 QMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLV 175
           Q+CFETEE AR+LL NVSSLLKPGGYF GITPDSSTIWAKYQKNVEAYHNRSSSMKPN+V
Sbjct: 128 QLCFETEESARKLLHNVSSLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSSSMKPNIV 187

Query: 176 PNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLI 224
           PNCIRSESY+ITFEVEEEKFPLFGKKYQLKFA+DISAET CLVHFPSLI
Sbjct: 188 PNCIRSESYMITFEVEEEKFPLFGKKYQLKFAHDISAETHCLVHFPSLI 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463871|ref|XP_003602217.1| mRNA cap guanine-N7 methyltransferase [Medicago truncatula] gi|355491265|gb|AES72468.1| mRNA cap guanine-N7 methyltransferase [Medicago truncatula]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/237 (74%), Positives = 199/237 (83%), Gaps = 1/237 (0%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
           H RLY+FAK ALIKI++HPY TVC+LYCG   D  KW  + IANYIGIDV++S I + R 
Sbjct: 18  HQRLYDFAKMALIKIFAHPYATVCELYCGEASDAHKWLDSQIANYIGIDVSSSAIQQIRQ 77

Query: 73  TW-ENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQN 131
           +  +N  K+    FF  DP  E+ E ++++K N  D VCC QHLQ+CFETEE+ARRLLQN
Sbjct: 78  SLGDNNNKSCTTHFFHLDPSTESIEIRLEDKTNTVDFVCCLQHLQLCFETEEKARRLLQN 137

Query: 132 VSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191
           VSSLLKPGGYFLGITPDSSTIWAKYQKNVE+YHNRSSSMKPN+VPNCIR+E+Y I FEVE
Sbjct: 138 VSSLLKPGGYFLGITPDSSTIWAKYQKNVESYHNRSSSMKPNIVPNCIRTENYTIAFEVE 197

Query: 192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR 248
           EEKFPLFGKKYQLKFAND+SAET CLVHFPSLIRLAREAGLEYVEIQNL EFYDDNR
Sbjct: 198 EEKFPLFGKKYQLKFANDVSAETHCLVHFPSLIRLAREAGLEYVEIQNLTEFYDDNR 254

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565855|ref|NP_190789.3| mRNA cap guanine-N7 methyltransferase 2 [Arabidopsis thaliana] gi|75105185|sp|Q5HZ60.1|MCES2_ARATH RecName: Full=mRNA cap guanine-N7 methyltransferase 2; AltName: Full=mRNA (guanine-N(7)-)-methyltransferase 2; AltName: Full=mRNA cap methyltransferase 2 gi|57222116|gb|AAW38965.1| At3g52210 [Arabidopsis thaliana] gi|58531336|gb|AAW78590.1| At3g52210 [Arabidopsis thaliana] gi|332645393|gb|AEE78914.1| mRNA cap guanine-N7 methyltransferase 2 [Arabidopsis thaliana]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/248 (69%), Positives = 206/248 (83%), Gaps = 2/248 (0%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS   + + E +HHRL++FAKTA+I I++HPY TVC+LYCG   + DKWE A I +YIGI
Sbjct: 1   MSGFVVSKPEQSHHRLFDFAKTAIINIFAHPYATVCELYCGGAPETDKWEAAPIGHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
           D  +SGI   R+ WE+QRKN+  EFFEADP  ++FE Q+Q+K  QADLV C++HLQ+CFE
Sbjct: 61  DT-SSGISSVREAWESQRKNYDVEFFEADPSKDDFEIQLQKKLEQADLVSCWRHLQLCFE 119

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE ARRLL NV+ LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS + KPN+ PN IR
Sbjct: 120 TEESARRLLTNVACLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGA-KPNVFPNYIR 178

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFE+EEEKFPLFGK+YQLKF+ D ++E  CLVHFPSLIRLAREAGLE+VEIQ+L
Sbjct: 179 SESYMITFELEEEKFPLFGKRYQLKFSGDNASEDHCLVHFPSLIRLAREAGLEFVEIQSL 238

Query: 241 NEFYDDNR 248
            +FYDDNR
Sbjct: 239 TDFYDDNR 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79314795|ref|NP_001030844.1| mRNA cap guanine-N7 methyltransferase 2 [Arabidopsis thaliana] gi|332645395|gb|AEE78916.1| mRNA cap guanine-N7 methyltransferase 2 [Arabidopsis thaliana]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/248 (68%), Positives = 205/248 (82%), Gaps = 1/248 (0%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS   + + E +HHRL++FAKTA+I I++HPY TVC+LYCG   + DKWE A I +YIGI
Sbjct: 1   MSGFVVSKPEQSHHRLFDFAKTAIINIFAHPYATVCELYCGGAPETDKWEAAPIGHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
              +SGI   R+ WE+QRKN+  EFFEADP  ++FE Q+Q+K  QADLV C++HLQ+CFE
Sbjct: 61  VDTSSGISSVREAWESQRKNYDVEFFEADPSKDDFEIQLQKKLEQADLVSCWRHLQLCFE 120

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE ARRLL NV+ LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS + KPN+ PN IR
Sbjct: 121 TEESARRLLTNVACLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGA-KPNVFPNYIR 179

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFE+EEEKFPLFGK+YQLKF+ D ++E  CLVHFPSLIRLAREAGLE+VEIQ+L
Sbjct: 180 SESYMITFELEEEKFPLFGKRYQLKFSGDNASEDHCLVHFPSLIRLAREAGLEFVEIQSL 239

Query: 241 NEFYDDNR 248
            +FYDDNR
Sbjct: 240 TDFYDDNR 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
FB|FBgn0001974	427	l(2)35Bd "lethal (2) 35Bd" [Dr	0.779	0.470	0.294	1e-21
TAIR|locus:2083420	370	AT3G20650 "AT3G20650" [Arabido	0.841	0.586	0.312	2.8e-20
WB|WBGene00006447	380	tag-72 [Caenorhabditis elegans	0.755	0.513	0.319	1.4e-18
UNIPROTKB|Q9XVS1	380	tag-72 "mRNA cap guanine-N7 me	0.755	0.513	0.319	1.4e-18
UNIPROTKB|K7EP06	298	RNMT "mRNA cap guanine-N7 meth	0.596	0.516	0.301	5.3e-18
SGD|S000000440	436	ABD1 "Methyltransferase" [Sacc	0.837	0.495	0.316	1.9e-17
RGD|1309242	461	Rnmt "RNA (guanine-7-) methylt	0.596	0.334	0.301	3.1e-17
MGI|MGI:1915147	465	Rnmt "RNA (guanine-7-) methylt	0.596	0.331	0.295	6.5e-17
UNIPROTKB|O43148	476	RNMT "mRNA cap guanine-N7 meth	0.596	0.323	0.301	8.1e-17
UNIPROTKB|Q4R7K1	476	RNMT "mRNA cap guanine-N7 meth	0.596	0.323	0.306	1.1e-16

FB|FBgn0001974 l(2)35Bd "lethal (2) 35Bd" [Drosophila melanogaster (taxid:7227)]

 Score = 257 (95.5 bits), Expect = 1.0e-21, P = 1.0e-21
 Identities = 66/224 (29%), Positives = 109/224 (48%)

Query:    35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN--QRKN-------FIAEF 85
             V D+ CG G D+ KWE A I++ I  D+A   + + +  +++  QR         F AEF
Sbjct:   139 VLDMCCGKGGDLLKWEKAAISHLICTDIAEVSVEQCQRRYQDILQRSEKSKFANKFTAEF 198

Query:    86 FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145
             F  D        + ++ + Q +LV C      CFE+  +A  +++N +  LKPGG+F+  
Sbjct:   199 FACDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCMMRNAAECLKPGGFFIAT 258

Query:   146 TPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLK 205
              PD+  I  +          R++        N +    Y I F+ E +  PLFG KYQ  
Sbjct:   259 MPDAYEIIRRL---------RAAGPDARRFGNDV----YSIEFDCETDPLPLFGAKYQFH 305

Query:   206 FANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRH 249
                 +    + LVHFP+L++L R+ GL+ ++     ++Y +N H
Sbjct:   306 LEGVVDCP-EFLVHFPTLVKLGRKYGLQLLKRSTFADYYKENLH 348

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2083420 AT3G20650 "AT3G20650" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 78/250 (31%), Positives = 121/250 (48%)

Query:     9 SELTH-HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGI 67
             S + H  +L  + K+ LI++Y+ P   V DL CG G D+ KW+ A I  Y+GID+A   I
Sbjct:    61 SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120

Query:    68 GEARDTWEN------QRKNFIAEFFEADPCAENFETQMQ---EKANQADLVCCFQHLQMC 118
              + R  +        +RK F   F     C + FE ++    E+    D+  C   +   
Sbjct:   121 EDCRTRYNGDADHHQRRKKF--SFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYS 178

Query:   119 FETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNC 178
             + TE RARR L NVS+LL+PGG F+G  PD++ I  K ++        +  ++   + N 
Sbjct:   179 WTTEARARRALANVSALLRPGGVFIGTMPDANVIIKKLRE--------AEGLE---IGNS 227

Query:   179 IRSESYVITF--EVEEEKFPL---FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLE 233
             +    Y I F  E  ++KF     FG +Y     + +    + +V F     LA E  LE
Sbjct:   228 V----YWIRFGEEYSQKKFKSSSPFGIEYVFHLEDAVDCP-EWIVPFNVFKSLAEEYDLE 282

Query:   234 YVEIQNLNEF 243
              V ++N +EF
Sbjct:   283 LVFVKNSHEF 292

GO:0003824 "catalytic activity" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;ISS

GO:0015824 "proline transport" evidence=RCA

WB|WBGene00006447 tag-72 [Caenorhabditis elegans (taxid:6239)]

 Score = 227 (85.0 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 68/213 (31%), Positives = 99/213 (46%)

Query:    35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ---RKN--FIAEFFEAD 89
             V DL CG G D+ KW+ A   + +  DVA   I +A + ++     +KN  F  +F  AD
Sbjct:    58 VLDLACGKGGDLKKWDIAGAKDVVMADVADVSIQQAEERYKQMFGYKKNNIFTVQFIVAD 117

Query:    90 PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149
                EN E +++ K +  DLV C   L   F  E  AR  L+N   +LKPGG F+G  PD+
Sbjct:   118 CTKENLEDRIENK-DPFDLVSCQFALHYSFVDEASARIFLKNAVGMLKPGGVFIGTLPDA 176

Query:   150 STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFAND 209
               I       V +  N  +    N V  C    +Y    E+ E K PLFG K+       
Sbjct:   177 DRI-------VWSMRNGENGQFANEV--C--KITYENVEELAEGKVPLFGAKFHFSLDEQ 225

Query:   210 ISAETQCLVHFPSLIRLAREAGLEYVEIQNLNE 242
             ++   + L +FP +  L  E  +E + + N  E
Sbjct:   226 VNCP-EFLAYFPLVKHLLEELDMELLFVHNFAE 257

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA

UNIPROTKB|Q9XVS1 tag-72 "mRNA cap guanine-N7 methyltransferase" [Caenorhabditis elegans (taxid:6239)]

 Score = 227 (85.0 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 68/213 (31%), Positives = 99/213 (46%)

Query:    35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ---RKN--FIAEFFEAD 89
             V DL CG G D+ KW+ A   + +  DVA   I +A + ++     +KN  F  +F  AD
Sbjct:    58 VLDLACGKGGDLKKWDIAGAKDVVMADVADVSIQQAEERYKQMFGYKKNNIFTVQFIVAD 117

Query:    90 PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149
                EN E +++ K +  DLV C   L   F  E  AR  L+N   +LKPGG F+G  PD+
Sbjct:   118 CTKENLEDRIENK-DPFDLVSCQFALHYSFVDEASARIFLKNAVGMLKPGGVFIGTLPDA 176

Query:   150 STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFAND 209
               I       V +  N  +    N V  C    +Y    E+ E K PLFG K+       
Sbjct:   177 DRI-------VWSMRNGENGQFANEV--C--KITYENVEELAEGKVPLFGAKFHFSLDEQ 225

Query:   210 ISAETQCLVHFPSLIRLAREAGLEYVEIQNLNE 242
             ++   + L +FP +  L  E  +E + + N  E
Sbjct:   226 VNCP-EFLAYFPLVKHLLEELDMELLFVHNFAE 257

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

UNIPROTKB|K7EP06 RNMT "mRNA cap guanine-N7 methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
 Identities = 53/176 (30%), Positives = 83/176 (47%)

Query:    33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE---NQRKN---FIAEFF 86
             +TV DL CG G D+ KW+   I   +  D+A   + + +  +E   N+R +   F AEF 
Sbjct:    21 ITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFI 80

Query:    87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
              AD   E    + ++     D+  C       FE+ E+A  +L+N    L PGGYF+G T
Sbjct:    81 TADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT 140

Query:   147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY 202
             P+S  +     + +EA    S             +E Y + F+ + + +PLFG KY
Sbjct:   141 PNSFELI----RRLEASETESFG-----------NEIYTVKFQKKGD-YPLFGCKY 180

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

SGD|S000000440 ABD1 "Methyltransferase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 219 (82.2 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 73/231 (31%), Positives = 105/231 (45%)

Query:    21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK- 79
             K  LI  Y+ P   V +L CG G D+ K+  A I+ +IGID++ + I EA   + + R  
Sbjct:   154 KYMLIDKYTKPGDVVLELGCGKGGDLRKYGAAGISQFIGIDISNASIQEAHKRYRSMRNL 213

Query:    80 NFIAEFFEADPCAENFETQMQEKAN---QADLVCCFQHLQMCFETEERARRLLQNVSSLL 136
             ++       D   E+    ++   +     D+V     L   FETEE+ARR L NV+  L
Sbjct:   214 DYQVVLITGDCFGESLGVAVEPFPDCRFPCDIVSTQFCLHYAFETEEKARRALLNVAKSL 273

Query:   137 KPGGYFLGITPDSSTI---WAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEE 193
             K GG+F G  PDS  I     K+ K VE     +S  K     N  +   Y  T      
Sbjct:   274 KIGGHFFGTIPDSEFIRYKLNKFPKEVEKPSWGNSIYKVTFENNSYQKNDYEFTS----- 328

Query:   194 KFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFY 244
               P +G+ Y     + I    + +V F +L  LA E GLE V     N+F+
Sbjct:   329 --P-YGQMYTYWLEDAIDNVPEYVVPFETLRSLADEYGLELVSQMPFNKFF 376

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA;ISS;IDA

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IPI

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=IPI

GO:0036265 "RNA (guanine-N7)-methylation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IMP

RGD|1309242 Rnmt "RNA (guanine-7-) methyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 177 (67.4 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
 Identities = 53/176 (30%), Positives = 82/176 (46%)

Query:    33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN---QRKN---FIAEFF 86
             +TV DL CG G D+ KW    I+  +  D+A   + + +  +E+   +R N   F AEF 
Sbjct:   184 ITVLDLGCGKGGDLLKWRKGRISRLVCADIADISMKQCQQRYEDMKCRRDNEYIFSAEFI 243

Query:    87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
              AD   E    +  +     D+  C       FE+ E+A  +L+N    L PGGYF+G T
Sbjct:   244 TADCSKELLVEKFHDPEMYFDICSCQFACHYSFESLEQADMMLRNACGRLNPGGYFIGTT 303

Query:   147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY 202
             P+S  +     + +EA    S             +E Y + F+ ++  +PLFG KY
Sbjct:   304 PNSFELI----RRLEASETESFG-----------NEIYTVKFQ-KKGNYPLFGCKY 343

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA;ISO;ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA;ISO;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005845 "mRNA cap binding complex" evidence=ISO;ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISO;ISS

GO:0008150 "biological_process" evidence=ND

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISO

MGI|MGI:1915147 Rnmt "RNA (guanine-7-) methyltransferase" [Mus musculus (taxid:10090)]

 Score = 175 (66.7 bits), Expect = 6.5e-17, Sum P(2) = 6.5e-17
 Identities = 52/176 (29%), Positives = 83/176 (47%)

Query:    33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN---QRKN---FIAEFF 86
             +TV DL CG G D+ KW    I+  +  D+A   + + +  +E+   +R N   F AEF 
Sbjct:   188 ITVLDLGCGKGGDLLKWRKGRISRLVCADIADISMKQCQQRYEDMRCRRDNEHIFSAEFI 247

Query:    87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
              AD   E    + ++     D+  C       FE++ +A  +L+N    L PGGYF+G T
Sbjct:   248 TADCSKELLVEKFRDPEMYFDVCSCQFACHYSFESQVQADTMLRNACGRLNPGGYFIGTT 307

Query:   147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY 202
             P+S  +     + +EA    S             +E Y + F+ ++  +PLFG KY
Sbjct:   308 PNSFELI----RRLEASETESFG-----------NEIYTVKFQ-KKGNYPLFGCKY 347

GO:0003723 "RNA binding" evidence=ISO

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005845 "mRNA cap binding complex" evidence=ISO

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISO

GO:0080009 "mRNA methylation" evidence=ISO

UNIPROTKB|O43148 RNMT "mRNA cap guanine-N7 methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
 Identities = 53/176 (30%), Positives = 83/176 (47%)

Query:    33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE---NQRKN---FIAEFF 86
             +TV DL CG G D+ KW+   I   +  D+A   + + +  +E   N+R +   F AEF 
Sbjct:   199 ITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFI 258

Query:    87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
              AD   E    + ++     D+  C       FE+ E+A  +L+N    L PGGYF+G T
Sbjct:   259 TADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT 318

Query:   147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY 202
             P+S  +     + +EA    S             +E Y + F+ + + +PLFG KY
Sbjct:   319 PNSFELI----RRLEASETESFG-----------NEIYTVKFQKKGD-YPLFGCKY 358

GO:0006370 "7-methylguanosine mRNA capping" evidence=IMP;TAS

GO:0003723 "RNA binding" evidence=IMP

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IDA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005845 "mRNA cap binding complex" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=IMP;IDA;TAS

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q4R7K1 RNMT "mRNA cap guanine-N7 methyltransferase" [Macaca fascicularis (taxid:9541)]

 Score = 175 (66.7 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
 Identities = 54/176 (30%), Positives = 83/176 (47%)

Query:    33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE---NQRKN---FIAEFF 86
             +TV DL CG G D+ KW+   I   +  D+A   I + +  +E   N+R +   F AEF 
Sbjct:   199 ITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSIKQCQQRYEDMKNRRDSEYIFSAEFI 258

Query:    87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
              AD   E    + ++     D+  C       FE+ E+A  +L+N    L PGGYF+G T
Sbjct:   259 TADCSKELLIEKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT 318

Query:   147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY 202
             P+S  +     + +EA    S             +E Y + F+ + + +PLFG KY
Sbjct:   319 PNSFELI----RRLEASETESFG-----------NEIYTVKFQKKGD-YPLFGCKY 358

GO:0003723 "RNA binding" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5HZ60	MCES2_ARATH	2, ., 1, ., 1, ., 5, 6	0.6935	0.9534	0.6949	yes	no
Q6K833	MCES2_ORYSJ	2, ., 1, ., 1, ., 5, 6	0.7161	0.8992	0.6843	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.921
4th Layer	2.1.1.56	0.914
4th Layer	2.1.1.145	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	258
pfam03291	327	pfam03291, Pox_MCEL, mRNA capping enzyme	2e-33
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	5e-08
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	6e-08
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	1e-07
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	3e-06
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	2e-05
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	3e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.001

>gnl|CDD|217477 pfam03291, Pox_MCEL, mRNA capping enzyme

 Score =  123 bits (310), Expect = 2e-33
 Identities = 70/247 (28%), Positives = 112/247 (45%), Gaps = 29/247 (11%)

Query: 21  KTALIKIY-SH-----PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW 74
           K+ LI +Y S      P   V DL CG G D++K+    I+  IG D+A   I +A++ +
Sbjct: 47  KSLLISLYASKTFQDKPKRKVLDLDCGKGGDLEKYFKGGISGLIGTDIAEVSIEQAQERY 106

Query: 75  E------NQRKN---FIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERA 125
                    +     FIAEF   D    +     +    + D+V     +   FE+EE+A
Sbjct: 107 NDLNSRSKSKYYKFDFIAEFITGDCFVSSVREVFEPGQRKFDIVSWQFAIHYSFESEEKA 166

Query: 126 RRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV 185
           R +L+N++ LL  GG F+G TPD   I  K           +     +   N I    Y 
Sbjct: 167 RTMLRNLAELLASGGKFIGTTPDGDFIIKKLT--------ATFVEHKSF-GNSI----YY 213

Query: 186 ITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD 245
           ++FE ++   P FG KY     + ++   + LV F +L+ LA E GLE V+ +  ++ Y+
Sbjct: 214 VSFE-KDPPRPPFGIKYVYNLEDMVTDVPEYLVPFETLVELAEEYGLELVDKKTFHDIYN 272

Query: 246 DNRHADE 252
           +      
Sbjct: 273 EEIKKYR 279

This family of enzymes are related to pfam03919. Length = 327

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 14/120 (11%)

Query: 33  VTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFI--AEFFEA 88
           + V DL CG G         L   A  +GID++   I +A+   EN +K      EF + 
Sbjct: 5   IKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAK---ENAKKLGYENVEFIQG 61

Query: 89  DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148
           D   E      Q + N  D+V   + L    + ++    +L+ +  +LKPGG  +   P 
Sbjct: 62  D--IEELPQL-QLEDNSFDVVISNEVLNHLPDPDK----VLEEIIRVLKPGGVLIVSDPV 114

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 49.4 bits (118), Expect = 6e-08
 Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 9/110 (8%)

Query: 34  TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93
            V DL CG G       +   A   G+D++   +  AR        + + E  + D    
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNV-EVLKGD---- 55

Query: 94  NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
             E    E     D++             E   R L+    LLKPGG  +
Sbjct: 56  -AEELPPEADESFDVIISD---PPLHHLVEDLARFLEEARRLLKPGGVLV 101

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 9/106 (8%)

Query: 35  VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN 94
           + DL CG G  +     A  ++  G+D++   +  A++    + K     F  AD     
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKER--LRDKGPKVRFVVADA---- 54

Query: 95  FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG 140
               +  +    DLV C          ++  R LL+  + LL+PGG
Sbjct: 55  --RDLPFEEGSFDLVICAGLSLDYLSPKQ-LRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 17/107 (15%)

Query: 37  DLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96
           D+ CG G+  +       A   G+D++   +  AR     +R     +F   D     F 
Sbjct: 2   DVGCGTGLLAEALARRGGARVTGVDLSPEMLALAR-----KRAPR--KFVVGDAEDLPFP 54

Query: 97  TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
                     D+V                 R L+ ++ +LKPGG  +
Sbjct: 55  ------DESFDVVVSSL----VLHHLPDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 27/126 (21%), Positives = 38/126 (30%), Gaps = 26/126 (20%)

Query: 34  TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93
            V D+ CG G+ +         +  G+D                     + F   DP   
Sbjct: 25  RVLDIGCGTGILLRLLRERG-FDVTGVD------------PSPAAVLIFSLFDAPDP--- 68

Query: 94  NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW 153
                    A + DL+  F       E       LLQ +  LLKPGG  L  TP +    
Sbjct: 69  ------AVLAGKYDLITAF----EVLEHLPDPPALLQQLRELLKPGGVLLISTPLADDDA 118

Query: 154 AKYQKN 159
             +   
Sbjct: 119 RLFANW 124

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 11/107 (10%)

Query: 37  DLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF 95
           D+ CG G  +     AL    Y G+D++ + +  A +          A     D      
Sbjct: 2   DIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAER-LAALGLLDAVRVRLDVLDAID 60

Query: 96  ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142
                      D+V     L          R +L+N+  LLKPGG  
Sbjct: 61  L-----DPGSFDVVVASNVLH-HLAD---PRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 29/118 (24%)

Query: 34  TVCDLYCGAGVDVDKWETALIA------NYIGIDVATSGIGEARDTWENQRKNFIA--EF 85
            V D+ CG G          +A         G+D++   +  AR   EN +        F
Sbjct: 4   RVLDIGCGTG-----SLAIELARLFPGARVTGVDLSPEMLELAR---ENAKLALGPRITF 55

Query: 86  FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
            + D  A +    ++      D V          E       LL  ++SLLKPGG  +
Sbjct: 56  VQGD--APDALDLLEG----FDAVFIGGGGGDLLE-------LLDALASLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	100.0
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	100.0
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.92
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.92
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.84
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.84
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.82
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.82
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.79
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.78
PLN02244	340	tocopherol O-methyltransferase	99.78
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.77
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.76
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.76
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.75
PRK05785	226	hypothetical protein; Provisional	99.74
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.73
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.73
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.72
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.72
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.71
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.71
KOG1271	227	consensus Methyltransferases [General function pre	99.69
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.69
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.69
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.69
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.69
PRK11207	197	tellurite resistance protein TehB; Provisional	99.69
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.69
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.68
PLN02336	475	phosphoethanolamine N-methyltransferase	99.68
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.66
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.66
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.65
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.65
PLN02490	340	MPBQ/MSBQ methyltransferase	99.65
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.65
TIGR03438	301	probable methyltransferase. This model represents	99.65
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.63
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.62
PRK12335	287	tellurite resistance protein TehB; Provisional	99.62
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.61
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.61
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.61
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.61
PRK06202	232	hypothetical protein; Provisional	99.61
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.61
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.6
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.6
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.59
KOG4300	252	consensus Predicted methyltransferase [General fun	99.59
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.58
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.58
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.57
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.56
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.56
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.56
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.56
PRK06922	677	hypothetical protein; Provisional	99.56
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.55
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.55
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.54
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.54
PRK08317	241	hypothetical protein; Provisional	99.54
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.52
KOG2361	264	consensus Predicted methyltransferase [General fun	99.52
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.52
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.51
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.51
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.5
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.49
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.49
PLN03075	296	nicotianamine synthase; Provisional	99.48
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.48
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.47
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.47
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.46
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.45
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.45
PLN02336	475	phosphoethanolamine N-methyltransferase	99.45
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.45
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.44
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.44
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.44
PRK14967	223	putative methyltransferase; Provisional	99.44
PRK04266	226	fibrillarin; Provisional	99.43
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.42
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.42
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.41
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.41
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.39
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.37
PRK14968	188	putative methyltransferase; Provisional	99.36
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.35
PTZ00146	293	fibrillarin; Provisional	99.35
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.34
KOG3010	261	consensus Methyltransferase [General function pred	99.33
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.33
COG4123	248	Predicted O-methyltransferase [General function pr	99.33
PRK07402	196	precorrin-6B methylase; Provisional	99.32
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.32
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.31
TIGR00438	188	rrmJ cell division protein FtsJ.	99.31
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.31
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.3
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.29
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.29
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.28
PRK04457	262	spermidine synthase; Provisional	99.28
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.27
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.25
PRK00811	283	spermidine synthase; Provisional	99.24
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.24
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.24
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.21
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.21
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.2
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.19
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.19
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.19
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.18
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.18
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.18
KOG2904	328	consensus Predicted methyltransferase [General fun	99.17
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.17
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.16
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.15
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.15
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.14
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.13
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	99.13
PHA03411	279	putative methyltransferase; Provisional	99.11
COG2890	280	HemK Methylase of polypeptide chain release factor	99.11
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.1
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.08
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.08
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.07
PRK01581	374	speE spermidine synthase; Validated	99.07
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.07
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.07
PLN02366	308	spermidine synthase	99.07
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.05
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.04
PHA03412	241	putative methyltransferase; Provisional	99.02
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.02
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.99
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.98
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.98
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.97
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.96
KOG2940	325	consensus Predicted methyltransferase [General fun	98.94
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.94
PLN02476	278	O-methyltransferase	98.94
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.94
PRK03612	521	spermidine synthase; Provisional	98.93
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.93
KOG2899	288	consensus Predicted methyltransferase [General fun	98.89
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.89
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.88
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.88
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.88
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.87
PLN02672	1082	methionine S-methyltransferase	98.87
COG4122	219	Predicted O-methyltransferase [General function pr	98.83
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.82
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.81
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.8
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.77
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.76
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.75
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.75
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.75
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.75
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.75
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.74
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.74
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.73
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.72
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.72
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.71
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.71
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.7
PRK04148	134	hypothetical protein; Provisional	98.69
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.66
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.62
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.61
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.6
PLN02823	336	spermine synthase	98.57
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.52
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.52
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.51
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.51
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.49
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.47
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.43
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.42
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.42
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.41
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.41
KOG1331	293	consensus Predicted methyltransferase [General fun	98.4
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.4
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.38
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.37
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.37
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.36
COG2520	341	Predicted methyltransferase [General function pred	98.36
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.36
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.34
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.34
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.33
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.33
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.31
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.29
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.28
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.28
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.28
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.26
COG2521	287	Predicted archaeal methyltransferase [General func	98.23
PRK00536	262	speE spermidine synthase; Provisional	98.2
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	98.19
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.17
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.16
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.16
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.08
PF13679	141	Methyltransf_32: Methyltransferase domain	98.07
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.07
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.99
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.98
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.96
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.96
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.92
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.86
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.85
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.85
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.83
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.83
COG3897	218	Predicted methyltransferase [General function pred	97.75
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.74
KOG2730	263	consensus Methylase [General function prediction o	97.73
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.69
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.69
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.65
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.65
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.63
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.61
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.6
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.54
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.54
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.51
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.47
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.43
COG4076	252	Predicted RNA methylase [General function predicti	97.36
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.31
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.29
COG4301	321	Uncharacterized conserved protein [Function unknow	97.24
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.23
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.23
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.21
COG0286	489	HsdM Type I restriction-modification system methyl	97.18
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.9
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	96.88
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.85
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	96.81
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.78
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.63
PRK11524	284	putative methyltransferase; Provisional	96.59
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.53
KOG3115	249	consensus Methyltransferase-like protein [General	96.49
PRK10742	250	putative methyltransferase; Provisional	96.45
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.36
PRK13699	227	putative methylase; Provisional	96.32
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.26
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.26
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.25
PLN02668	386	indole-3-acetate carboxyl methyltransferase	96.13
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.13
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.05
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.0
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.99
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.92
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	95.87
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.8
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	95.56
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	95.54
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	95.45
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.44
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.33
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.26
COG1565	370	Uncharacterized conserved protein [Function unknow	95.2
COG4798	238	Predicted methyltransferase [General function pred	95.18
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	95.14
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.12
PF03269	177	DUF268: Caenorhabditis protein of unknown function	95.06
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.03
KOG1227	351	consensus Putative methyltransferase [General func	95.01
PHA01634	156	hypothetical protein	94.88
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	94.79
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	94.7
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.66
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	94.56
KOG2671	421	consensus Putative RNA methylase [Replication, rec	94.29
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	94.29
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.03
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.92
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	93.85
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	93.83
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	93.72
TIGR00497	501	hsdM type I restriction system adenine methylase (	93.65
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	93.4
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	93.07
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	92.86
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	92.23
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	91.77
KOG2920	282	consensus Predicted methyltransferase [General fun	91.63
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	91.6
KOG2352	482	consensus Predicted spermine/spermidine synthase [	91.49
PTZ00357	1072	methyltransferase; Provisional	91.3
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	91.25
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	90.93
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	89.76
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	89.7
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	89.57
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	88.85
PRK03659	601	glutathione-regulated potassium-efflux system prot	88.54
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	88.1
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	87.96
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	87.72
PRK03562	621	glutathione-regulated potassium-efflux system prot	87.27
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	87.23
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	86.97
PRK10458	467	DNA cytosine methylase; Provisional	86.92
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	86.83
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	86.66
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	86.2
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	85.75
KOG2078	495	consensus tRNA modification enzyme [RNA processing	85.71
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	85.04
PRK10669	558	putative cation:proton antiport protein; Provision	84.93
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	84.8
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	84.6
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	84.59
PRK11524	284	putative methyltransferase; Provisional	84.25
COG0863	302	DNA modification methylase [DNA replication, recom	82.88
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	82.61
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	82.56
PF06016	1289	Reovirus_L2: Reovirus core-spike protein lambda-2	82.55
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	82.41
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	81.82
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	81.81
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	81.57
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	81.32
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	81.29
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	81.04
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	80.96
PRK08267	260	short chain dehydrogenase; Provisional	80.26

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=100.00  E-value=1e-47  Score=321.21  Aligned_cols=229  Identities=35%  Similarity=0.585  Sum_probs=199.7

Q ss_pred             CCCcch---HHhHHHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC-----
Q 025059            7 PRSELT---HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-----   78 (258)
Q Consensus         7 ~~~~~~---~~~~~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-----   78 (258)
                      .|+.||   +++++||||++||+.|.+++..++|||||.|+++.+|-..+++.++|+||++.+|++|++|+.+..     
T Consensus        90 ~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~  169 (389)
T KOG1975|consen   90 KRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKK  169 (389)
T ss_pred             hhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhc
Confidence            466666   445789999999999999999999999999999999999999999999999999999999997642     


Q ss_pred             CCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHH
Q 025059           79 KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (258)
Q Consensus        79 ~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~  158 (258)
                      ..+.+.|+.+|+....+...++.++.+||+|+|+|++||+|++.+.++.++.|++++|+|||+||+|+|+++.|.+++++
T Consensus       170 ~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~  249 (389)
T KOG1975|consen  170 FIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRA  249 (389)
T ss_pred             ccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHh
Confidence            23458999999988777666654555699999999999999999999999999999999999999999999999999986


Q ss_pred             hHHhhhcCCCCCCCCCCCCcccCeeEEEEecccC---CCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEE
Q 025059          159 NVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE---EKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYV  235 (258)
Q Consensus       159 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~~~~---~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~  235 (258)
                      .      .     ...|||+    +|+|+|+.+.   ...|+||.+|.|+|++++. ||||+|+++.|..+++++|++++
T Consensus       250 ~------e-----~~~~gNd----iykv~y~~~~~k~~~~p~fG~kY~F~LedaVd-cPEylV~F~~l~~lae~y~LeLv  313 (389)
T KOG1975|consen  250 G------E-----VERFGND----IYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVD-CPEYLVPFPTLVSLAEEYGLELV  313 (389)
T ss_pred             c------c-----chhhcce----eeeEeeeeecccccCCCCccceEEEEcccccC-CcceeeehHHHHHHHHhcCcEEE
Confidence            3      1     1356665    6777776432   2279999999999999875 99999999999999999999999


Q ss_pred             EeCChhHHHHhccCCC
Q 025059          236 EIQNLNEFYDDNRHAD  251 (258)
Q Consensus       236 ~~~~f~~~~~~~~~~~  251 (258)
                      ..++|.+||+++.++-
T Consensus       314 ~~k~F~df~~e~~~~~  329 (389)
T KOG1975|consen  314 FVKPFADFYEEELKKN  329 (389)
T ss_pred             EeccHHHHHHHhcccc
Confidence            9999999999998764

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=100.00  E-value=3.8e-47  Score=330.83  Aligned_cols=234  Identities=39%  Similarity=0.707  Sum_probs=187.6

Q ss_pred             CCCcch---HHhHHHHHHHHHHHHhcC------CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHh-
Q 025059            7 PRSELT---HHRLYEFAKTALIKIYSH------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN-   76 (258)
Q Consensus         7 ~~~~~~---~~~~~~~~k~~li~~~~~------~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-   76 (258)
                      .|..|+   +++++||||++||+.+++      ++.+|||||||.|+++.+|...+...++|+|||..+|++|++|+.. 
T Consensus        29 ~R~~S~i~~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~  108 (331)
T PF03291_consen   29 ERQESPIFHLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQL  108 (331)
T ss_dssp             -----TCHHHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHH
T ss_pred             hhhhChhHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            345553   455789999999999999      8999999999999999999999999999999999999999999932 


Q ss_pred             --------cCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059           77 --------QRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus        77 --------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                              ....+.+.|+.+|+....+...+..+..+||+|+|+|++||+|++.+.++.+|.++++.|+|||+||+|+|+
T Consensus       109 ~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  109 KKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             HTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             ccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence                    122467899999998877766664445799999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHH
Q 025059          149 SSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAR  228 (258)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~  228 (258)
                      ++.|.+++++...           ...+..+++++|+|+|+.+ +..|.||.+|.|+|++++++++||||+++.|+++|+
T Consensus       189 ~~~i~~~l~~~~~-----------~~~~~~~gN~~y~I~f~~~-~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~  256 (331)
T PF03291_consen  189 SDEIVKRLREKKS-----------NSEKKKFGNSVYSIEFDSD-DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAK  256 (331)
T ss_dssp             HHHHHCCHHC-EE-----------ECCCSCSETSSEEEEESCC-SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHH
T ss_pred             HHHHHHHHHhhcc-----------cccccccCCccEEEEeccc-CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHH
Confidence            9999887775211           0122334456799999976 577899999999999999999999999999999999


Q ss_pred             HcCcEEEEeCChhHHHHhccCCCc
Q 025059          229 EAGLEYVEIQNLNEFYDDNRHADE  252 (258)
Q Consensus       229 ~~Gf~~~~~~~f~~~~~~~~~~~~  252 (258)
                      ++||++++..+|.+||+++.+..+
T Consensus       257 eyGLeLV~~~~F~ef~~e~~~~~~  280 (331)
T PF03291_consen  257 EYGLELVEKKNFHEFYEEEKNKYE  280 (331)
T ss_dssp             HTTEEEEEEEEHHHHHHHHCCCCH
T ss_pred             HcCCEEEEeCChHHHHHHhccCch
Confidence            999999999999999998776654

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.92  E-value=6.3e-25  Score=183.40  Aligned_cols=180  Identities=22%  Similarity=0.305  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (258)
Q Consensus        18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (258)
                      -|.+..+-.....++.+|||+|||||..+..+++.  +.++++|+|+|+.|++.|+++....+.. +++++++|+.+.++
T Consensus        34 ~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~  112 (233)
T PF01209_consen   34 RWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF  112 (233)
T ss_dssp             ---SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S
T ss_pred             HHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC
Confidence            45443332223457899999999999988888775  3369999999999999999999876544 89999999999888


Q ss_pred             hhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE---EcCchHHHH---HHHHhHHhhhcCCCC
Q 025059           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWA---KYQKNVEAYHNRSSS  169 (258)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~---~~~~~~~~~---~~~~~~~~~~~~~~~  169 (258)
                            ++++||+|+|.+++|++    ++...+++++.|+|||||.+++.   .|....+..   .|.+.+.|..+    
T Consensus       113 ------~d~sfD~v~~~fglrn~----~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g----  178 (233)
T PF01209_consen  113 ------PDNSFDAVTCSFGLRNF----PDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIG----  178 (233)
T ss_dssp             -------TT-EEEEEEES-GGG-----SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH--------------
T ss_pred             ------CCCceeEEEHHhhHHhh----CCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccc----
Confidence                  78999999999999973    34778999999999999999877   444433322   22222222111    


Q ss_pred             CCCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCCh
Q 025059          170 MKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (258)
Q Consensus       170 ~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f  240 (258)
                             .-         +       ..-...|.| |.+|+..    +++++++.++++++||+.++..++
T Consensus       179 -------~l---------~-------~~~~~~Y~y-L~~Si~~----f~~~~~~~~~l~~~Gf~~v~~~~~  221 (233)
T PF01209_consen  179 -------RL---------L-------SGDREAYRY-LPESIRR----FPSPEELKELLEEAGFKNVEYRPL  221 (233)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             -------cc---------c-------ccccccccc-ccccccc----cccccccccccccccccccccccc
Confidence                   00         0       000014666 7777754    789999999999999998876554

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.92  E-value=2.2e-24  Score=178.74  Aligned_cols=177  Identities=21%  Similarity=0.304  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (258)
Q Consensus        18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (258)
                      .|-+.........||.+|||+|||||..+..+++. +.++++|+|+|+.||+.|+++....+.. .+.|+++|+.+.|+ 
T Consensus        38 ~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-~i~fv~~dAe~LPf-  115 (238)
T COG2226          38 LWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-NVEFVVGDAENLPF-  115 (238)
T ss_pred             HHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-ceEEEEechhhCCC-
Confidence            56554443334447999999999999999999887 5579999999999999999999876544 39999999999998 


Q ss_pred             hhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE---EcCchHHHHHHHH---h-HHhhhcCCCC
Q 025059           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQK---N-VEAYHNRSSS  169 (258)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~---~~~~~~~~~~~~~---~-~~~~~~~~~~  169 (258)
                           ++++||+|++.+++++    ..+.+.+|+++.|+|||||.+++.   .|....+...|..   + +.|.      
T Consensus       116 -----~D~sFD~vt~~fglrn----v~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~------  180 (238)
T COG2226         116 -----PDNSFDAVTISFGLRN----VTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPL------  180 (238)
T ss_pred             -----CCCccCEEEeeehhhc----CCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhh------
Confidence                 8999999999999998    446899999999999999998887   3333344333332   2 3332      


Q ss_pred             CCCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEe
Q 025059          170 MKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI  237 (258)
Q Consensus       170 ~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~  237 (258)
                           +|..+       ...         ...|.| |.+|+..    +++.+++.++++++||+.+..
T Consensus       181 -----~g~~~-------~~~---------~~~y~y-L~eSi~~----~p~~~~l~~~~~~~gf~~i~~  222 (238)
T COG2226         181 -----IGKLV-------AKD---------AEAYEY-LAESIRR----FPDQEELKQMIEKAGFEEVRY  222 (238)
T ss_pred             -----hceee-------ecC---------hHHHHH-HHHHHHh----CCCHHHHHHHHHhcCceEEee
Confidence                 12110       000         113555 7676644    789999999999999998863

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.84  E-value=2.4e-20  Score=152.55  Aligned_cols=170  Identities=17%  Similarity=0.245  Sum_probs=127.9

Q ss_pred             HHHHHHHhcC-CCCEEEEEcCCCCccHHHHHHc-C------CCeEEEEecChhHHHHHHHHHHhcCCCc--eeEEEEcCC
Q 025059           21 KTALIKIYSH-PYVTVCDLYCGAGVDVDKWETA-L------IANYIGIDVATSGIGEARDTWENQRKNF--IAEFFEADP   90 (258)
Q Consensus        21 k~~li~~~~~-~~~~VLDlGcG~G~~~~~~~~~-~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~~~~~~~d~   90 (258)
                      |..++...-+ ++++|||+|||||..+..+.+. +      .++|+++|+|++||+.+++|....++..  .+.++++|+
T Consensus        89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA  168 (296)
T KOG1540|consen   89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA  168 (296)
T ss_pred             HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence            4444444333 6799999999999999888776 1      2689999999999999999986654422  489999999


Q ss_pred             CCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc---hHHHHHHHHhHHhhhcCC
Q 025059           91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQKNVEAYHNRS  167 (258)
Q Consensus        91 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~---~~~~~~~~~~~~~~~~~~  167 (258)
                      .+.++      ++.+||..++.|++++    ..+..+.++++.|+|||||.|.+.-.+.   +.+...|..         
T Consensus       169 E~LpF------dd~s~D~yTiafGIRN----~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~---------  229 (296)
T KOG1540|consen  169 EDLPF------DDDSFDAYTIAFGIRN----VTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ---------  229 (296)
T ss_pred             ccCCC------CCCcceeEEEecceec----CCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh---------
Confidence            99998      7999999999999988    4457889999999999999998774433   233333322         


Q ss_pred             CCCCCCCCCCcccCeeEEEEecccCCCCCCcee-------ceEEEEccCccCCCccccchHHHHHHHHHcCcEEEE
Q 025059          168 SSMKPNLVPNCIRSESYVITFEVEEEKFPLFGK-------KYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVE  236 (258)
Q Consensus       168 ~~~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~-------~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~  236 (258)
                                      |+  |    +.+|..|.       .|+| |.+|++.    +.+.++|..+.+++||..+.
T Consensus       230 ----------------ys--f----~VlpvlG~~iagd~~sYqY-LveSI~r----fp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  230 ----------------YS--F----DVLPVLGEIIAGDRKSYQY-LVESIRR----FPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             ----------------hh--h----hhhchhhHhhhhhHhhhhh-HHhhhhc----CCCHHHHHHHHHHcCCcccc
Confidence                            10  1    12233332       4666 7777755    77899999999999999885

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.84  E-value=6.5e-20  Score=159.68  Aligned_cols=161  Identities=16%  Similarity=0.200  Sum_probs=115.7

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||||||+|.++..++..+. +|+|+|+|++|++.|+++........++.++++|+.+.++      .+++||+|+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~------~~~~FD~Vi  203 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD------EGRKFDAVL  203 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh------ccCCCCEEE
Confidence            467999999999999988877554 8999999999999999886544322368899999765443      467999999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEecc
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEV  190 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~~  190 (258)
                      |..++++    ..+...+++++.++|||||.+++++++.....  +....              .+.     .|-..   
T Consensus       204 ~~~vLeH----v~d~~~~L~~l~r~LkPGG~liist~nr~~~~--~~~~i--------------~~~-----eyi~~---  255 (322)
T PLN02396        204 SLEVIEH----VANPAEFCKSLSALTIPNGATVLSTINRTMRA--YASTI--------------VGA-----EYILR---  255 (322)
T ss_pred             EhhHHHh----cCCHHHHHHHHHHHcCCCcEEEEEECCcCHHH--HHHhh--------------hhH-----HHHHh---
Confidence            9998887    33467899999999999999999988864321  11000              000     00000   


Q ss_pred             cCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChh
Q 025059          191 EEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (258)
Q Consensus       191 ~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~  241 (258)
                         ..|. |           ......+++++++.++++++||++++...+.
T Consensus       256 ---~lp~-g-----------th~~~~f~tp~eL~~lL~~aGf~i~~~~G~~  291 (322)
T PLN02396        256 ---WLPK-G-----------THQWSSFVTPEELSMILQRASVDVKEMAGFV  291 (322)
T ss_pred             ---cCCC-C-----------CcCccCCCCHHHHHHHHHHcCCeEEEEeeeE
Confidence               0010 1           0111237899999999999999999887765

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.82  E-value=1.3e-19  Score=154.36  Aligned_cols=110  Identities=19%  Similarity=0.151  Sum_probs=89.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHh--cCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWEN--QRKNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      ..++.+|||+|||+|..+..++.. + ..+++|+|+|++|++.|+++...  .....++.++++|+.+.++      +++
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~------~~~  144 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF------DDC  144 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC------CCC
Confidence            347889999999999988877765 3 35899999999999999887642  1112268999999988776      678


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +||+|++.+++|+.    ++...+++++.++|||||.+++....
T Consensus       145 sfD~V~~~~~l~~~----~d~~~~l~ei~rvLkpGG~l~i~d~~  184 (261)
T PLN02233        145 YFDAITMGYGLRNV----VDRLKAMQEMYRVLKPGSRVSILDFN  184 (261)
T ss_pred             CEeEEEEecccccC----CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            99999999999873    35788999999999999999888544

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.82  E-value=1.1e-20  Score=154.51  Aligned_cols=180  Identities=18%  Similarity=0.221  Sum_probs=127.4

Q ss_pred             CcchHHhHH----HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeE
Q 025059            9 SELTHHRLY----EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAE   84 (258)
Q Consensus         9 ~~~~~~~~~----~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~   84 (258)
                      ...|.++++    +|++...-.++.-++.+|||+|||.|.++..+++.+. .|+|+|+++.+|+.|+.+....+.  .++
T Consensus        33 ~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv--~i~  109 (243)
T COG2227          33 EFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV--NID  109 (243)
T ss_pred             ceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc--ccc
Confidence            334445544    4666555444445899999999999999999999995 999999999999999999887743  455


Q ss_pred             EEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhh
Q 025059           85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYH  164 (258)
Q Consensus        85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~  164 (258)
                      +.+..+.+...      ..++||+|+|..++.+    .++...++.++.+++||||.+++++++.......+--....  
T Consensus       110 y~~~~~edl~~------~~~~FDvV~cmEVlEH----v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae--  177 (243)
T COG2227         110 YRQATVEDLAS------AGGQFDVVTCMEVLEH----VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAE--  177 (243)
T ss_pred             chhhhHHHHHh------cCCCccEEEEhhHHHc----cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHH--
Confidence            66665533221      3489999999997766    56677899999999999999999999964433222111000  


Q ss_pred             cCCCCCCCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCCh
Q 025059          165 NRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (258)
Q Consensus       165 ~~~~~~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f  240 (258)
                                                           |....-...++...-++.++++.+.+...|+++.....+
T Consensus       178 -------------------------------------~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~  216 (243)
T COG2227         178 -------------------------------------YVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL  216 (243)
T ss_pred             -------------------------------------HHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence                                                 000000011223344788999999999999999877654

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.79  E-value=1.1e-18  Score=129.54  Aligned_cols=109  Identities=27%  Similarity=0.337  Sum_probs=90.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCC-CCCchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP-CAENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~fD~  108 (258)
                      |+.+|||||||+|..+..+++. +..+++|+|+|+.+++.|+++........++.++++|+ ....       ..+.||+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~D~   73 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-------FLEPFDL   73 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-------TSSCEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-------cCCCCCE
Confidence            6789999999999999999883 55699999999999999999996555556899999998 2222       2467999


Q ss_pred             EEecc-ccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          109 VCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       109 V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |++.. .++.++. .+....+++++.+.|+|||+++++.+
T Consensus        74 v~~~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~lvi~~~  112 (112)
T PF12847_consen   74 VICSGFTLHFLLP-LDERRRVLERIRRLLKPGGRLVINTC  112 (112)
T ss_dssp             EEECSGSGGGCCH-HHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             EEECCCccccccc-hhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            99998 5664333 37789999999999999999998753

...

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.78  E-value=5.5e-18  Score=144.48  Aligned_cols=108  Identities=19%  Similarity=0.201  Sum_probs=90.1

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++....   .++.+.++|+...++      ++++||+
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---~~i~~~~~D~~~~~~------~~~~FD~  120 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---NKIEFEANDILKKDF------PENTFDM  120 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC---CceEEEECCcccCCC------CCCCeEE
Confidence            4688999999999999888886654459999999999999999887542   278999999877665      5789999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |++..++++  .+.++...+++++.++|+|||.++++.+
T Consensus       121 V~s~~~l~h--~~~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        121 IYSRDAILH--LSYADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             EEEhhhHHh--CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            999877665  2445788999999999999999999854

>PLN02244 tocopherol O-methyltransferase

Probab=99.78  E-value=3e-17  Score=144.88  Aligned_cols=109  Identities=22%  Similarity=0.239  Sum_probs=92.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||||||+|..+..++.....+++|+|+|+.|++.|+++....+...++.++++|+.+.++      ++++||+|
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~------~~~~FD~V  190 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF------EDGQFDLV  190 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC------CCCCccEE
Confidence            467899999999999999888764459999999999999999988766554478999999987776      67899999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ++..+++++    .+...+++++.++|||||.++++...
T Consensus       191 ~s~~~~~h~----~d~~~~l~e~~rvLkpGG~lvi~~~~  225 (340)
T PLN02244        191 WSMESGEHM----PDKRKFVQELARVAAPGGRIIIVTWC  225 (340)
T ss_pred             EECCchhcc----CCHHHHHHHHHHHcCCCcEEEEEEec
Confidence            999988763    34678999999999999999987543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.77  E-value=8.6e-18  Score=142.79  Aligned_cols=118  Identities=19%  Similarity=0.157  Sum_probs=95.0

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (258)
                      +++....++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|+++....+...++.++++|+.+...     ..+
T Consensus        37 ~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-----~~~  110 (255)
T PRK11036         37 LLAELPPRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-----HLE  110 (255)
T ss_pred             HHHhcCCCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-----hcC
Confidence            4444445678999999999999999988765 8999999999999999998776544478899999755321     146


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~  151 (258)
                      ++||+|++..+++++    ++...++.++.++|+|||.+++...+...
T Consensus       111 ~~fD~V~~~~vl~~~----~~~~~~l~~~~~~LkpgG~l~i~~~n~~~  154 (255)
T PRK11036        111 TPVDLILFHAVLEWV----ADPKSVLQTLWSVLRPGGALSLMFYNANG  154 (255)
T ss_pred             CCCCEEEehhHHHhh----CCHHHHHHHHHHHcCCCeEEEEEEECccH
Confidence            799999999988873    34568999999999999999998777654

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.76  E-value=2.6e-17  Score=139.03  Aligned_cols=161  Identities=20%  Similarity=0.247  Sum_probs=127.5

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .+.||.+|||||||.|+++..++.....+|+|+++|+++.+.+++++...+...++++...|..+         ..+.||
T Consensus        69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd---------~~e~fD  139 (283)
T COG2230          69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD---------FEEPFD  139 (283)
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc---------cccccc
Confidence            35699999999999999999998886559999999999999999999988776678888888754         245699


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVIT  187 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~  187 (258)
                      .|++..++.+  .+.+....+++.+.++|+|||.+++.+.....-.                              +   
T Consensus       140 rIvSvgmfEh--vg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~------------------------------~---  184 (283)
T COG2230         140 RIVSVGMFEH--VGKENYDDFFKKVYALLKPGGRMLLHSITGPDQE------------------------------F---  184 (283)
T ss_pred             eeeehhhHHH--hCcccHHHHHHHHHhhcCCCceEEEEEecCCCcc------------------------------c---
Confidence            9999998877  4567799999999999999999988744331100                              0   


Q ss_pred             ecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChhHHHH
Q 025059          188 FEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD  245 (258)
Q Consensus       188 f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~~~~  245 (258)
                           ...+.|-.+|.|        +..++++...+.+.++++||.+....+|-..|.
T Consensus       185 -----~~~~~~i~~yiF--------PgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa  229 (283)
T COG2230         185 -----RRFPDFIDKYIF--------PGGELPSISEILELASEAGFVVLDVESLRPHYA  229 (283)
T ss_pred             -----ccchHHHHHhCC--------CCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHH
Confidence                 011234445655        234678889999999999999999888877665

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.76  E-value=5.5e-18  Score=121.40  Aligned_cols=95  Identities=26%  Similarity=0.339  Sum_probs=82.3

Q ss_pred             EEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEecccc
Q 025059           36 CDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHL  115 (258)
Q Consensus        36 LDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l  115 (258)
                      ||+|||+|..+..++..+..+++|+|+++.+++.++++....    ...+.++|+.+.++      ++++||+|++..++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~------~~~sfD~v~~~~~~   70 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPF------PDNSFDVVFSNSVL   70 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-------TT-EEEEEEESHG
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCcc------ccccccccccccce
Confidence            899999999999998885669999999999999999988765    55699999988887      78999999999999


Q ss_pred             ccccCCHHHHHHHHHHHHhcccCCcEEEE
Q 025059          116 QMCFETEERARRLLQNVSSLLKPGGYFLG  144 (258)
Q Consensus       116 ~~~~~~~~~~~~~l~~i~~~LkpgG~~i~  144 (258)
                      ++.    ++...+++++.|+|||||++++
T Consensus        71 ~~~----~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   71 HHL----EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             GGS----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eec----cCHHHHHHHHHHHcCcCeEEeC
Confidence            983    7789999999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.75  E-value=5.9e-18  Score=141.63  Aligned_cols=120  Identities=17%  Similarity=0.225  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (258)
Q Consensus        18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (258)
                      .|....+-....+++.+|||+|||+|..+..++.. + ..+++|+|+|+.+++.|+++...... .++.++++|+...++
T Consensus        32 ~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~  110 (231)
T TIGR02752        32 KWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPF  110 (231)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCC
Confidence            44433332223447889999999999999888775 2 35899999999999999998876543 268999999876554


Q ss_pred             hhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                            ++++||+|++.+++++    .++...+++++.++|+|||.+++..+.
T Consensus       111 ------~~~~fD~V~~~~~l~~----~~~~~~~l~~~~~~Lk~gG~l~~~~~~  153 (231)
T TIGR02752       111 ------DDNSFDYVTIGFGLRN----VPDYMQVLREMYRVVKPGGKVVCLETS  153 (231)
T ss_pred             ------CCCCccEEEEeccccc----CCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence                  5689999999988876    234568999999999999999887443

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK05785 hypothetical protein; Provisional

Probab=99.74  E-value=7.8e-18  Score=140.42  Aligned_cols=159  Identities=11%  Similarity=0.070  Sum_probs=110.6

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||||..+..+......+++|+|+|++|++.|+++.         .++++|+.+.++      ++++||+
T Consensus        49 ~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~------~d~sfD~  113 (226)
T PRK05785         49 CGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPF------RDKSFDV  113 (226)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCC------CCCCEEE
Confidence            3467899999999999988887763348999999999999997641         357888877776      6899999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCc-EEEEEEcCch---HHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDSS---TIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESY  184 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG-~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  184 (258)
                      |++.+++|+    ..+...+++++.++|||.+ ++-+..|+..   .+...|.+.+.|.+..       .++..      
T Consensus       114 v~~~~~l~~----~~d~~~~l~e~~RvLkp~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~-------~~~~~------  176 (226)
T PRK05785        114 VMSSFALHA----SDNIEKVIAEFTRVSRKQVGFIAMGKPDNVIKRKYLSFYLRYIMPYIAC-------LAGAK------  176 (226)
T ss_pred             EEecChhhc----cCCHHHHHHHHHHHhcCceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHH-------HhcCC------
Confidence            999999986    3457889999999999953 3333345443   3334444444443221       11110      


Q ss_pred             EEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCC
Q 025059          185 VITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN  239 (258)
Q Consensus       185 ~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~  239 (258)
                                    ...|.| |.+|+..    +++++++.++++++| ..+....
T Consensus       177 --------------~~~Y~y-l~~si~~----f~~~~~~~~~~~~~~-~~~~~~~  211 (226)
T PRK05785        177 --------------CRDYKY-IYYIYER----LPTNSFHREIFEKYA-DIKVYEE  211 (226)
T ss_pred             --------------hHHHHH-HHHHHHH----CCCHHHHHHHHHHHh-CceEEEE
Confidence                          012444 6666644    789999999999974 4454443

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.73  E-value=4.3e-17  Score=128.28  Aligned_cols=100  Identities=26%  Similarity=0.418  Sum_probs=80.2

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|.++..+...+. +++|+|+++.+++.       .    .......+......      ++++||+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-------~----~~~~~~~~~~~~~~------~~~~fD~   81 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-------R----NVVFDNFDAQDPPF------PDGSFDL   81 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-------T----TSEEEEEECHTHHC------HSSSEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-------h----hhhhhhhhhhhhhc------cccchhh
Confidence            46789999999999999999977777 99999999999987       1    22333332222112      5789999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      |+|..+++++    ++...+++++.++|+|||++++++++..
T Consensus        82 i~~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   82 IICNDVLEHL----PDPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             EEEESSGGGS----SHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             HhhHHHHhhc----ccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            9999999983    3588999999999999999999998864

...

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.73  E-value=9.6e-18  Score=138.19  Aligned_cols=170  Identities=17%  Similarity=0.233  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHh--cCCC------CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC-----CCceeE
Q 025059           18 EFAKTALIKIY--SHPY------VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-----KNFIAE   84 (258)
Q Consensus        18 ~~~k~~li~~~--~~~~------~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-----~~~~~~   84 (258)
                      -|+++-+....  +.|+      .+|||+|||+|-++..+++.+. +|+|+|+++.|++.|+++.....     ..+++.
T Consensus        68 ~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~  146 (282)
T KOG1270|consen   68 PFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLE  146 (282)
T ss_pred             hHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeee
Confidence            45666555555  2344      7899999999999999999886 99999999999999999844332     123466


Q ss_pred             EEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhh
Q 025059           85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYH  164 (258)
Q Consensus        85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~  164 (258)
                      +.+.|+..         ..+.||.|+|+.++++    ..++..++..+.++|+|||.+++++.+...+...         
T Consensus       147 ~~~~~~E~---------~~~~fDaVvcsevleH----V~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~---------  204 (282)
T KOG1270|consen  147 YEDTDVEG---------LTGKFDAVVCSEVLEH----VKDPQEFLNCLSALLKPNGRLFITTINRTILSFA---------  204 (282)
T ss_pred             hhhcchhh---------cccccceeeeHHHHHH----HhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhh---------
Confidence            67776643         2456999999998776    7779999999999999999999998886544321         


Q ss_pred             cCCCCCCCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCCh
Q 025059          165 NRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (258)
Q Consensus       165 ~~~~~~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f  240 (258)
                                 ++        |.+.           .|.-.+..-+.+..|-+++|..+..++++.|+++.....+
T Consensus       205 -----------~~--------i~~~-----------E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~G~  250 (282)
T KOG1270|consen  205 -----------GT--------IFLA-----------EIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVGE  250 (282)
T ss_pred             -----------cc--------ccHH-----------HHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhhcc
Confidence                       11        0000           0000001112344566899999999999999887766554

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.72  E-value=9.4e-17  Score=135.79  Aligned_cols=112  Identities=21%  Similarity=0.236  Sum_probs=92.3

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (258)
                      ++....+++.+|||+|||+|..+..++..   +..+++|+|+|+.|++.|+++....+...++.++++|+.+.++     
T Consensus        49 ~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----  123 (247)
T PRK15451         49 LAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----  123 (247)
T ss_pred             HHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----
Confidence            44555678899999999999988887662   3459999999999999999999765544478999999866443     


Q ss_pred             hcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                         ..+|+|++.+++|+  .+......+++++.++|+|||.++++
T Consensus       124 ---~~~D~vv~~~~l~~--l~~~~~~~~l~~i~~~LkpGG~l~l~  163 (247)
T PRK15451        124 ---ENASMVVLNFTLQF--LEPSERQALLDKIYQGLNPGGALVLS  163 (247)
T ss_pred             ---CCCCEEehhhHHHh--CCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence               45899999999987  34566789999999999999999987

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.72  E-value=7.3e-17  Score=137.76  Aligned_cols=166  Identities=21%  Similarity=0.221  Sum_probs=111.5

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      -++||.+|||||||.|+.+..++.....+|+|+.+|++..+.++++....++..++++...|..+  +       +.+||
T Consensus        59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~--~-------~~~fD  129 (273)
T PF02353_consen   59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD--L-------PGKFD  129 (273)
T ss_dssp             T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------S-S
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc--c-------CCCCC
Confidence            45699999999999999999998883349999999999999999999988776678999998643  2       34999


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVIT  187 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~  187 (258)
                      .|++..++.++  ..+....+++.+.++|+|||.+++.......-.....        ..                    
T Consensus       130 ~IvSi~~~Ehv--g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~--------~~--------------------  179 (273)
T PF02353_consen  130 RIVSIEMFEHV--GRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAE--------RR--------------------  179 (273)
T ss_dssp             EEEEESEGGGT--CGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHC--------TT--------------------
T ss_pred             EEEEEechhhc--ChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhh--------cC--------------------
Confidence            99999877652  3477899999999999999999977444322111000        00                    


Q ss_pred             ecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChhHHHHh
Q 025059          188 FEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD  246 (258)
Q Consensus       188 f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~~~~~  246 (258)
                            ....|-.+|.|        +..++++..++...+++.||++....++...|..
T Consensus       180 ------~~~~~i~kyiF--------Pgg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~  224 (273)
T PF02353_consen  180 ------SSSDFIRKYIF--------PGGYLPSLSEILRAAEDAGLEVEDVENLGRHYAR  224 (273)
T ss_dssp             ------CCCHHHHHHTS--------TTS---BHHHHHHHHHHTT-EEEEEEE-HHHHHH
T ss_pred             ------CCceEEEEeeC--------CCCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHHH
Confidence                  00011122322        2235778899999999999999999888877753

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.71  E-value=1.5e-16  Score=124.69  Aligned_cols=109  Identities=23%  Similarity=0.321  Sum_probs=90.2

Q ss_pred             CCCCEEEEEcCCCCccHHHHHH-c-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWET-A-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~-~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      +++.+|||+|||+|..+..++. . +..+++|+|+|+.|++.|+++.+..+.. +++|+++|+.+.+-  .+  + ++||
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~--~~--~-~~~D   75 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQ--EL--E-EKFD   75 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCG--CS--S-TTEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhcccc--cc--C-CCee
Confidence            3578999999999999999984 3 3469999999999999999998877655 79999999977431  01  2 7999


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +|++..++++    ..+...+++++.++|++||.+++..+.
T Consensus        76 ~I~~~~~l~~----~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   76 IIISNGVLHH----FPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEEEESTGGG----TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEEcCchhh----ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            9999988876    345678999999999999999999777

...

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.71  E-value=2.5e-16  Score=137.78  Aligned_cols=105  Identities=19%  Similarity=0.107  Sum_probs=84.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||||||+|.++..++..+...|+|+|+|+.++..++......+...++.+..+|+.+.++       .++||+|+
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~~~FD~V~  194 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------LKAFDTVF  194 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------cCCcCEEE
Confidence            67899999999999999998887778999999999998654432221112268899999866543       57899999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |..++++    ..+...+++++.++|+|||.+++.+
T Consensus       195 s~~vl~H----~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        195 SMGVLYH----RRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             ECChhhc----cCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            9998886    3456789999999999999999874

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.69  E-value=2.6e-16  Score=122.86  Aligned_cols=141  Identities=20%  Similarity=0.207  Sum_probs=102.1

Q ss_pred             chHHhHHHHHHHHHHHHhcCCCC-EEEEEcCCCCccHHHHHHcCCC-eEEEEecChhHHHHHHHHHHhcCCCceeEEEEc
Q 025059           11 LTHHRLYEFAKTALIKIYSHPYV-TVCDLYCGAGVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEA   88 (258)
Q Consensus        11 ~~~~~~~~~~k~~li~~~~~~~~-~VLDlGcG~G~~~~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~   88 (258)
                      ...-|+-.|.+......-+.+.+ +|||||||+|.++..++..++. .++|+|.|+.+++.|+...+..+....+.|.++
T Consensus        46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~  125 (227)
T KOG1271|consen   46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL  125 (227)
T ss_pred             cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence            44556677876554311133344 9999999999999999998764 599999999999999998887765545999999


Q ss_pred             CCCCCchhhhhhhcCCceeEEEeccccccc----cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc--hHHHHHHH
Q 025059           89 DPCAENFETQMQEKANQADLVCCFQHLQMC----FETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ  157 (258)
Q Consensus        89 d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~----~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~--~~~~~~~~  157 (258)
                      |+.+..+      ..++||+|.--..+..+    -.....+...+..+.++|+|||+|+|+.+|.  +++.+.+.
T Consensus       126 DI~~~~~------~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~  194 (227)
T KOG1271|consen  126 DITDPDF------LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFE  194 (227)
T ss_pred             eccCCcc------cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHh
Confidence            9988655      45677777543322111    0112334678899999999999999998876  45555443

>TIGR00740 methyltransferase, putative

Probab=99.69  E-value=7.2e-16  Score=129.75  Aligned_cols=114  Identities=21%  Similarity=0.215  Sum_probs=93.6

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (258)
                      +......++.+|||+|||+|..+..++..   +..+++|+|+|+.|++.|++++.......++.++++|+.+.++     
T Consensus        46 l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----  120 (239)
T TIGR00740        46 LAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----  120 (239)
T ss_pred             HHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----
Confidence            44455668889999999999998888764   3458999999999999999998765444478999999876543     


Q ss_pred             hcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                         ..+|+|++.+++|+  .+.++...+++++.++|+|||.+++..+
T Consensus       121 ---~~~d~v~~~~~l~~--~~~~~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740       121 ---KNASMVILNFTLQF--LPPEDRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             ---CCCCEEeeecchhh--CCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence               35899999999997  3456788999999999999999999843

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.69  E-value=5.7e-16  Score=123.33  Aligned_cols=165  Identities=19%  Similarity=0.216  Sum_probs=118.9

Q ss_pred             HHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      .+|....+|+.+|||||||.|.++..+.........|+|++++.+..+.++        .+..+++|+.+. + ..+  +
T Consensus         5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~g-L-~~f--~   72 (193)
T PF07021_consen    5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEG-L-ADF--P   72 (193)
T ss_pred             HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHh-H-hhC--C
Confidence            456778889999999999999999998887666999999999999988766        567899998552 1 112  6


Q ss_pred             CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCe
Q 025059          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSE  182 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  182 (258)
                      +++||.|+++.++..    ....+.++.++.|   -|...|+++||......++.=     .-+|. ++     .     
T Consensus        73 d~sFD~VIlsqtLQ~----~~~P~~vL~EmlR---Vgr~~IVsFPNFg~W~~R~~l-----~~~Gr-mP-----v-----  129 (193)
T PF07021_consen   73 DQSFDYVILSQTLQA----VRRPDEVLEEMLR---VGRRAIVSFPNFGHWRNRLQL-----LLRGR-MP-----V-----  129 (193)
T ss_pred             CCCccEEehHhHHHh----HhHHHHHHHHHHH---hcCeEEEEecChHHHHHHHHH-----HhcCC-CC-----C-----
Confidence            899999999997765    5567777777754   477899999998655444331     11111 00     0     


Q ss_pred             eEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChh
Q 025059          183 SYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (258)
Q Consensus       183 ~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~  241 (258)
                               .+..|     |.|+- .    +.-.+.+...|+++|++.|+++++..-+.
T Consensus       130 ---------t~~lP-----y~WYd-T----PNih~~Ti~DFe~lc~~~~i~I~~~~~~~  169 (193)
T PF07021_consen  130 ---------TKALP-----YEWYD-T----PNIHLCTIKDFEDLCRELGIRIEERVFLD  169 (193)
T ss_pred             ---------CCCCC-----CcccC-C----CCcccccHHHHHHHHHHCCCEEEEEEEEc
Confidence                     01112     55532 1    22348899999999999999999876554

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR00452 methyltransferase, putative

Probab=99.69  E-value=3.9e-16  Score=135.48  Aligned_cols=106  Identities=15%  Similarity=0.019  Sum_probs=81.8

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|.++..++..+...++|+|+|+.|+.+++..-.......++.+..+++.+.+.       ..+||+|+
T Consensus       121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-------~~~FD~V~  193 (314)
T TIGR00452       121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-------LYAFDTVF  193 (314)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-------CCCcCEEE
Confidence            67899999999999988888777768999999999998654322111111267788888755442       35899999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |..++++    ..+...++++++++|+|||.+++.+.
T Consensus       194 s~gvL~H----~~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       194 SMGVLYH----RKSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             Ecchhhc----cCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence            9998877    34567899999999999999998743

Known examples to date are restricted to the proteobacteria.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.69  E-value=4.4e-16  Score=129.65  Aligned_cols=150  Identities=19%  Similarity=0.192  Sum_probs=113.7

Q ss_pred             CEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      .+|||||||+|..+..++... ..+++|+|+|+.+++.|+++....+...++.+...|+...++       .++||+|++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-------~~~fD~I~~   73 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-------PDTYDLVFG   73 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------CCCCCEeeh
Confidence            379999999999998887763 358999999999999999998876655578999999865543       458999999


Q ss_pred             ccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEeccc
Q 025059          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE  191 (258)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~~~  191 (258)
                      ..++++.    .+...+++++.++|+|||.+++..+.....                       ..              
T Consensus        74 ~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-----------------------~~--------------  112 (224)
T smart00828       74 FEVIHHI----KDKMDLFSNISRHLKDGGHLVLADFIANLL-----------------------SA--------------  112 (224)
T ss_pred             HHHHHhC----CCHHHHHHHHHHHcCCCCEEEEEEcccccC-----------------------cc--------------
Confidence            8888763    346799999999999999999874421100                       00              


Q ss_pred             CCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChhHHHHh
Q 025059          192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD  246 (258)
Q Consensus       192 ~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~~~~~  246 (258)
                            .+          ......|+.+.+.+.++++++||++++..++..-|..
T Consensus       113 ------~~----------~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~  151 (224)
T smart00828      113 ------IE----------HEETTSYLVTREEWAELLARNNLRVVEGVDASLEIAN  151 (224)
T ss_pred             ------cc----------ccccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhh
Confidence                  00          0001124677888999999999999988887766543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.69  E-value=3.4e-16  Score=127.95  Aligned_cols=104  Identities=18%  Similarity=0.165  Sum_probs=87.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++....+.. ++.+.++|+.+.++       +++||+|+
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~-------~~~fD~I~  100 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTF-------DGEYDFIL  100 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCc-------CCCcCEEE
Confidence            568999999999999999988765 9999999999999999888765432 47888888865443       46799999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +..++|+  .+.+....+++++.++|+|||++++.
T Consensus       101 ~~~~~~~--~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        101 STVVLMF--LEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             Eecchhh--CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            9998886  45677899999999999999997654

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.69  E-value=6.1e-16  Score=131.44  Aligned_cols=100  Identities=21%  Similarity=0.178  Sum_probs=83.1

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||||||+|..+..++... ..+++|+|+|+.|++.|+++        ++.+.++|+.+..       +.++||+
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-------~~~~fD~   92 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-------PKPDTDV   92 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-------CCCCceE
Confidence            477899999999999998887763 35899999999999999753        4678899975432       3578999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++..++|++    .+...+++++.++|+|||.++++.+.
T Consensus        93 v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103         93 VVSNAALQWV----PEHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             EEEehhhhhC----CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            9999999973    24678999999999999999998664

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.68  E-value=2e-16  Score=115.37  Aligned_cols=96  Identities=27%  Similarity=0.472  Sum_probs=78.9

Q ss_pred             EEEEcCCCCccHHHHHHcC----CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           35 VCDLYCGAGVDVDKWETAL----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        35 VLDlGcG~G~~~~~~~~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      |||+|||+|..+..+....    ..+++|+|+|++|++.++++....+.  +++++++|+.+.+.      ..++||+|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~------~~~~~D~v~   72 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF------SDGKFDLVV   72 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH------HSSSEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc------cCCCeeEEE
Confidence            7999999999999998762    25999999999999999999876543  78999999977543      578999999


Q ss_pred             eccc-cccccCCHHHHHHHHHHHHhcccCCc
Q 025059          111 CFQH-LQMCFETEERARRLLQNVSSLLKPGG  140 (258)
Q Consensus       111 ~~~~-l~~~~~~~~~~~~~l~~i~~~LkpgG  140 (258)
                      +... +++  .+.++...+++++.++|+|||
T Consensus        73 ~~~~~~~~--~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   73 CSGLSLHH--LSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             E-TTGGGG--SSHHHHHHHHHHHHHTEEEEE
T ss_pred             EcCCccCC--CCHHHHHHHHHHHHHHhCCCC
Confidence            9655 777  568889999999999999998

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.68  E-value=1.9e-15  Score=139.34  Aligned_cols=106  Identities=23%  Similarity=0.251  Sum_probs=88.5

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||||||+|..+..++.....+++|+|+|+.+++.|+++.....  .++.|.++|+...++      ++++||+|
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~--~~v~~~~~d~~~~~~------~~~~fD~I  336 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK--CSVEFEVADCTKKTY------PDNSFDVI  336 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC--CceEEEEcCcccCCC------CCCCEEEE
Confidence            4678999999999998888877644589999999999999988765432  368999999877665      56799999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      +|..++++.    .+...+++++.++|+|||.++++.+
T Consensus       337 ~s~~~l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~  370 (475)
T PLN02336        337 YSRDTILHI----QDKPALFRSFFKWLKPGGKVLISDY  370 (475)
T ss_pred             EECCccccc----CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            999888763    3467899999999999999998854

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.66  E-value=8.1e-15  Score=131.11  Aligned_cols=155  Identities=19%  Similarity=0.198  Sum_probs=113.6

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .+++.+|||||||+|..+..++.....+++|+|+|+++++.|+++....    .+.+...|...  +       +++||.
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----~v~~~~~D~~~--l-------~~~fD~  231 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----PVEIRLQDYRD--L-------NGQFDR  231 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----eEEEEECchhh--c-------CCCCCE
Confidence            4688999999999999998887764459999999999999999988532    57788887633  1       468999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEe
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF  188 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f  188 (258)
                      |++..++++  .+......+++++.++|+|||.+++.........                                   
T Consensus       232 Ivs~~~~eh--vg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~-----------------------------------  274 (383)
T PRK11705        232 IVSVGMFEH--VGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTD-----------------------------------  274 (383)
T ss_pred             EEEeCchhh--CChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC-----------------------------------
Confidence            999887776  2456678999999999999999998754321100                                   


Q ss_pred             cccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChhHHHHh
Q 025059          189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD  246 (258)
Q Consensus       189 ~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~~~~~  246 (258)
                          .....|-.+|.|        +..++.+.+.+.+.++ .||++.+..+|...|..
T Consensus       275 ----~~~~~~i~~yif--------p~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~  319 (383)
T PRK11705        275 ----TNVDPWINKYIF--------PNGCLPSVRQIAQASE-GLFVMEDWHNFGADYDR  319 (383)
T ss_pred             ----CCCCCCceeeec--------CCCcCCCHHHHHHHHH-CCcEEEEEecChhhHHH
Confidence                000112223433        1134677888888665 69999998888888753

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.66  E-value=1.7e-15  Score=123.61  Aligned_cols=103  Identities=18%  Similarity=0.184  Sum_probs=84.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++....+.  ++.+...|+...++       +++||+|+
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~~fD~I~   99 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAAL-------NEDYDFIF   99 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccc-------cCCCCEEE
Confidence            457999999999999999988765 899999999999999988766543  46777777654333       35799999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +..++|+  .+.+....+++++.++|+|||++++.
T Consensus       100 ~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       100 STVVFMF--LQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             Eeccccc--CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            9988876  34567889999999999999996554

Part of a tellurite-reducing operon tehA and tehB

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.65  E-value=1.1e-15  Score=129.41  Aligned_cols=103  Identities=17%  Similarity=0.237  Sum_probs=86.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|..+..+...+ .+++|+|+|+.|++.|+++..      ...++++|+...++      ++++||+|+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~------~~~~fD~V~  108 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPL------ATATFDLAW  108 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcC------CCCcEEEEE
Confidence            46789999999999888887655 499999999999999988753      24678899877665      567999999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      +..++++    ..+...++.++.++|+|||.++++++...
T Consensus       109 s~~~l~~----~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~  144 (251)
T PRK10258        109 SNLAVQW----CGNLSTALRELYRVVRPGGVVAFTTLVQG  144 (251)
T ss_pred             ECchhhh----cCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence            9998886    33477899999999999999999977653

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.65  E-value=1.1e-14  Score=120.88  Aligned_cols=102  Identities=20%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|.++..++..+. +++|+|+|+.|++.|+++........++.+.++|+.+.         .++||+|+
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~fD~ii  124 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---------CGEFDIVV  124 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------CCCcCEEE
Confidence            578999999999999999987654 89999999999999999987654333688999997542         26899999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~  144 (258)
                      +...+++  .+.+....++.++.+++++++++.+
T Consensus       125 ~~~~l~~--~~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       125 CMDVLIH--YPASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             EhhHHHh--CCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            9888765  2456688899999999987665544

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.65  E-value=9.5e-16  Score=134.16  Aligned_cols=104  Identities=18%  Similarity=0.161  Sum_probs=85.2

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||||||+|..+..++.. +..+++++|+|+.|++.|+++....    ++.++++|+.+.++      ++++||+
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~----~i~~i~gD~e~lp~------~~~sFDv  181 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKIIEGDAEDLPF------PTDYADR  181 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc----CCeEEeccHHhCCC------CCCceeE
Confidence            36789999999999988877665 3458999999999999999876533    57889999877665      5679999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |++..++++.    .+...+++++.++|+|||.+++..+
T Consensus       182 VIs~~~L~~~----~d~~~~L~e~~rvLkPGG~LvIi~~  216 (340)
T PLN02490        182 YVSAGSIEYW----PDPQRGIKEAYRVLKIGGKACLIGP  216 (340)
T ss_pred             EEEcChhhhC----CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9999888862    2345789999999999999987643

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.65  E-value=4.3e-15  Score=120.09  Aligned_cols=129  Identities=17%  Similarity=0.094  Sum_probs=98.6

Q ss_pred             CCCCCcchHHhHH-HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCce
Q 025059            5 PIPRSELTHHRLY-EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFI   82 (258)
Q Consensus         5 ~~~~~~~~~~~~~-~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~   82 (258)
                      ..++.++...... .++.+..+..+++++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++.+..+.. +
T Consensus        18 ~~~~~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~   96 (187)
T PRK00107         18 NLTAIRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-N   96 (187)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-C
Confidence            3344444444433 44466666777888899999999999988888764 4469999999999999999998887654 4


Q ss_pred             eEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059           83 AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus        83 ~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +.+.++|+.+..       ..++||+|++...        .....+++.+.++|+|||.+++..+..
T Consensus        97 i~~~~~d~~~~~-------~~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~~  148 (187)
T PRK00107         97 VTVVHGRAEEFG-------QEEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGRD  148 (187)
T ss_pred             EEEEeccHhhCC-------CCCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            899999986533       2468999998641        236789999999999999999885553

>TIGR03438 probable methyltransferase

Probab=99.65  E-value=2.3e-14  Score=124.58  Aligned_cols=112  Identities=20%  Similarity=0.148  Sum_probs=82.2

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC-chhhhhhhcCCce
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEKANQA  106 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~f  106 (258)
                      +++.+|||+|||+|..+..++...  ..+|+++|+|++|++.|++++.......++.++++|+.+. ++....  .....
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~~  139 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGRR  139 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCCe
Confidence            567899999999999999888774  3589999999999999999887643334678899998652 221000  00122


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .++++...+++  .+.++...++++++++|+|||.|++.
T Consensus       140 ~~~~~gs~~~~--~~~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       140 LGFFPGSTIGN--FTPEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             EEEEecccccC--CCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            23333344554  34778899999999999999999876

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.63  E-value=2.7e-15  Score=120.79  Aligned_cols=103  Identities=18%  Similarity=0.235  Sum_probs=84.3

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.++||||||.|+++..++..|. .|+++|+|+.+++.+++..+..+.  .+...+.|+.+..+       ++.||+|+
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~~-------~~~yD~I~   99 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFDF-------PEEYDFIV   99 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS--------TTTEEEEE
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhccc-------cCCcCEEE
Confidence            567999999999999999999999 899999999999999887766644  68889999877554       46899999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +..++++  ...+....++.+|.+.++|||++++.
T Consensus       100 st~v~~f--L~~~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen  100 STVVFMF--LQRELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             EESSGGG--S-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEecc--CCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence            8777776  45677899999999999999998875

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.62  E-value=2.4e-15  Score=127.98  Aligned_cols=104  Identities=29%  Similarity=0.346  Sum_probs=85.9

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      ..++.+|||||||+|.++..++.. +..+++|+|+|+.|++.|+++..      ++.+..+|+....       +.++||
T Consensus        29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~------~~~~~~~d~~~~~-------~~~~fD   95 (258)
T PRK01683         29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP------DCQFVEADIASWQ-------PPQALD   95 (258)
T ss_pred             CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC------CCeEEECchhccC-------CCCCcc
Confidence            347789999999999999888776 34699999999999999988753      5678889975432       346899


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +|++..++|++    .+...+++++.++|+|||.+++++++.
T Consensus        96 ~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~~~~~~~~~  133 (258)
T PRK01683         96 LIFANASLQWL----PDHLELFPRLVSLLAPGGVLAVQMPDN  133 (258)
T ss_pred             EEEEccChhhC----CCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence            99999999873    235789999999999999999987654

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.62  E-value=5.8e-15  Score=127.52  Aligned_cols=104  Identities=17%  Similarity=0.204  Sum_probs=87.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++++....+.  ++.+...|+....+       +++||+|+
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-------~~~fD~I~  189 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-------QEEYDFIL  189 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-------cCCccEEE
Confidence            345999999999999999988765 999999999999999998877654  67888888755433       57899999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +..++|+  .+.+....+++++.++|+|||++++..
T Consensus       190 ~~~vl~~--l~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        190 STVVLMF--LNRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             Ecchhhh--CCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9998886  356778899999999999999977653

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.61  E-value=1.5e-14  Score=119.96  Aligned_cols=104  Identities=24%  Similarity=0.293  Sum_probs=86.7

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCC--CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++.+|||+|||+|..+..++....  .+++++|+++.+++.++++...   ..++.+..+|+.+.++      ..++||
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~~~------~~~~~D  108 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL---PLNIEFIQADAEALPF------EDNSFD  108 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc---CCCceEEecchhcCCC------CCCcEE
Confidence            3788999999999999998887754  4899999999999999988751   2268899999876554      457899


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +|++.+++|+    ..+...+++++.+.|+|||.+++..
T Consensus       109 ~i~~~~~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       109 AVTIAFGLRN----VTDIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             EEEEeeeeCC----cccHHHHHHHHHHHcCCCcEEEEEE
Confidence            9999888776    3457789999999999999998864

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.61  E-value=4.3e-15  Score=118.56  Aligned_cols=106  Identities=19%  Similarity=0.281  Sum_probs=84.5

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      .-.++||+|||.|.++..++.... +++++|+|+.+++.|++|.....   ++.+.++|+....       ++++||+|+
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~Al~~Ar~Rl~~~~---~V~~~~~dvp~~~-------P~~~FDLIV  111 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRCD-RLLAVDISPRALARARERLAGLP---HVEWIQADVPEFW-------PEGRFDLIV  111 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHHHHHHHHHTTT-S---SEEEEES-TTT----------SS-EEEEE
T ss_pred             ccceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHHHHHHHHhcCCCC---CeEEEECcCCCCC-------CCCCeeEEE
Confidence            347899999999999999988764 89999999999999999998754   7999999986532       579999999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +..+++| +.+.+++..++..+...|+|||.+++-...
T Consensus       112 ~SEVlYY-L~~~~~L~~~l~~l~~~L~pgG~LV~g~~r  148 (201)
T PF05401_consen  112 LSEVLYY-LDDAEDLRAALDRLVAALAPGGHLVFGHAR  148 (201)
T ss_dssp             EES-GGG-SSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             EehHhHc-CCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            9998887 555788999999999999999999987543

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.61  E-value=1.8e-14  Score=120.64  Aligned_cols=108  Identities=21%  Similarity=0.258  Sum_probs=85.3

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||||||+|..+..+...+. +++++|+++.+++.|+++......  .+.+...|+...+.     ...++||+|
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~fD~I  118 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAA-----EHPGQFDVV  118 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhh-----hcCCCccEE
Confidence            3678999999999999888877654 899999999999999988765433  56777777643221     135799999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ++...+++    ..+...+++++.+.|+|||.++++.++.
T Consensus       119 i~~~~l~~----~~~~~~~l~~~~~~L~~gG~l~v~~~~~  154 (233)
T PRK05134        119 TCMEMLEH----VPDPASFVRACAKLVKPGGLVFFSTLNR  154 (233)
T ss_pred             EEhhHhhc----cCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence            99887765    3346788999999999999999987764

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.61  E-value=2.5e-14  Score=115.29  Aligned_cols=124  Identities=19%  Similarity=0.124  Sum_probs=90.3

Q ss_pred             CCCcchHHhHHHHHHHH-HHHHhcCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeE
Q 025059            7 PRSELTHHRLYEFAKTA-LIKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAE   84 (258)
Q Consensus         7 ~~~~~~~~~~~~~~k~~-li~~~~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~   84 (258)
                      .|..+|.....+.+... .....+ ++.+|||+|||+|..+..++... ..+++|+|+|+.|++.++++.+..+.. ++.
T Consensus        18 ~~~~~~~~~~~~~~~d~i~~~~~~-~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~   95 (181)
T TIGR00138        18 TSLKTPEEIWERHILDSLKLLEYL-DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVE   95 (181)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeE
Confidence            45555555444333322 222333 47899999999999888876553 458999999999999999888766543 589


Q ss_pred             EEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059           85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus        85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ++++|+.+..       ..++||+|++.. +++       ...+++.+.++|+|||.+++...
T Consensus        96 ~i~~d~~~~~-------~~~~fD~I~s~~-~~~-------~~~~~~~~~~~LkpgG~lvi~~~  143 (181)
T TIGR00138        96 IVNGRAEDFQ-------HEEQFDVITSRA-LAS-------LNVLLELTLNLLKVGGYFLAYKG  143 (181)
T ss_pred             EEecchhhcc-------ccCCccEEEehh-hhC-------HHHHHHHHHHhcCCCCEEEEEcC
Confidence            9999986532       357899998865 332       55678889999999999998743

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK06202 hypothetical protein; Provisional

Probab=99.61  E-value=1.8e-14  Score=120.75  Aligned_cols=103  Identities=18%  Similarity=0.122  Sum_probs=77.2

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc----C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA----L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      ++.+|||+|||+|..+..++..    + ..+++|+|+|+.|++.|+++....    ++.+.+.+....+.      .+++
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~------~~~~  129 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVA------EGER  129 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccc------cCCC
Confidence            5679999999999988777542    2 248999999999999998876543    35565665544333      4679


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ||+|++++++|+.  +.+....+++++.++++  |.+++...
T Consensus       130 fD~V~~~~~lhh~--~d~~~~~~l~~~~r~~~--~~~~i~dl  167 (232)
T PRK06202        130 FDVVTSNHFLHHL--DDAEVVRLLADSAALAR--RLVLHNDL  167 (232)
T ss_pred             ccEEEECCeeecC--ChHHHHHHHHHHHHhcC--eeEEEecc
Confidence            9999999999983  34557789999999998  44444433

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.61  E-value=1.4e-14  Score=118.98  Aligned_cols=100  Identities=13%  Similarity=0.149  Sum_probs=82.1

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .+++.+|||+|||+|..+..+... +..+++|+|+|+.|++.|+++.+      ++.+.++|+.+ ++      ++++||
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~------~~~sfD  107 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PF------KDNFFD  107 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CC------CCCCEE
Confidence            456789999999999999988776 45699999999999999987653      45678888766 44      578999


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|++..++++.  +.+.+..+++++.+++  ++.+++.
T Consensus       108 ~V~~~~vL~hl--~p~~~~~~l~el~r~~--~~~v~i~  141 (204)
T TIGR03587       108 LVLTKGVLIHI--NPDNLPTAYRELYRCS--NRYILIA  141 (204)
T ss_pred             EEEECChhhhC--CHHHHHHHHHHHHhhc--CcEEEEE
Confidence            99999999873  5678899999999998  4566665

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.60  E-value=2.9e-14  Score=118.64  Aligned_cols=122  Identities=20%  Similarity=0.250  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHh-cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059           18 EFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (258)
Q Consensus        18 ~~~k~~li~~~-~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (258)
                      .|++..+...- ..++.+|||+|||+|..+..++..+. .++++|+++.+++.+++++...+.. ++.+.+.|+.+.+..
T Consensus        31 ~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~  108 (224)
T TIGR01983        31 DYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEK  108 (224)
T ss_pred             HHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcC
Confidence            55555543220 12478999999999998888877655 7999999999999999988765321 477888886443221


Q ss_pred             hhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                           ..++||+|++...+++    ..+...+++++.++|+|||.+++..++..
T Consensus       109 -----~~~~~D~i~~~~~l~~----~~~~~~~l~~~~~~L~~gG~l~i~~~~~~  153 (224)
T TIGR01983       109 -----GAKSFDVVTCMEVLEH----VPDPQAFIRACAQLLKPGGILFFSTINRT  153 (224)
T ss_pred             -----CCCCccEEEehhHHHh----CCCHHHHHHHHHHhcCCCcEEEEEecCCC
Confidence                 2378999999887776    34467899999999999999998876643

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.60  E-value=4.5e-16  Score=113.00  Aligned_cols=98  Identities=27%  Similarity=0.311  Sum_probs=63.0

Q ss_pred             EEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccc
Q 025059           36 CDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQH  114 (258)
Q Consensus        36 LDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~  114 (258)
                      ||+|||+|.++..+... +..+++|+|+|+.|++.|++++...... .......+..+...  ..  ..++||+|++..+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~--~~--~~~~fD~V~~~~v   75 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFD--YD--PPESFDLVVASNV   75 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS-----CC--C----SEEEEE-T
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhh--cc--cccccceehhhhh
Confidence            79999999999999887 4459999999999999999888775421 22333333222111  00  2359999999999


Q ss_pred             cccccCCHHHHHHHHHHHHhcccCCcEE
Q 025059          115 LQMCFETEERARRLLQNVSSLLKPGGYF  142 (258)
Q Consensus       115 l~~~~~~~~~~~~~l~~i~~~LkpgG~~  142 (258)
                      +|++    ++...+++++.++|+|||+|
T Consensus        76 l~~l----~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   76 LHHL----EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             TS------S-HHHHHHHHTTT-TSS-EE
T ss_pred             Hhhh----hhHHHHHHHHHHHcCCCCCC
Confidence            9984    67889999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.59  E-value=2e-13  Score=118.81  Aligned_cols=105  Identities=20%  Similarity=0.286  Sum_probs=78.3

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC----CCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ++.+|||+|||+|.++..++..+. +++|+|+|+.|++.|+++.+...    ...++.|.+.|+..         .+++|
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~---------l~~~f  213 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES---------LSGKY  213 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh---------cCCCc
Confidence            578999999999999999988765 89999999999999999886531    11256888888632         24789


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |+|+|..++++  ...+....++..+.+ +.+||.++...|.
T Consensus       214 D~Vv~~~vL~H--~p~~~~~~ll~~l~~-l~~g~liIs~~p~  252 (315)
T PLN02585        214 DTVTCLDVLIH--YPQDKADGMIAHLAS-LAEKRLIISFAPK  252 (315)
T ss_pred             CEEEEcCEEEe--cCHHHHHHHHHHHHh-hcCCEEEEEeCCc
Confidence            99999998865  234455677777775 4566665543343

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.59  E-value=1e-14  Score=116.25  Aligned_cols=104  Identities=23%  Similarity=0.262  Sum_probs=87.4

Q ss_pred             CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeE-EEEcCCCCCc-hhhhhhhcCCceeEEE
Q 025059           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAE-FFEADPCAEN-FETQMQEKANQADLVC  110 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~~~~~~fD~V~  110 (258)
                      ..|||+|||||.+...+-..+...|+++|+++.|-+.|.+++...... ++. |+.++..+.+ +      +++++|+|+
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~l------~d~s~DtVV  150 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQL------ADGSYDTVV  150 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCccc------ccCCeeeEE
Confidence            457999999999877775556679999999999999999988776443 555 9999987766 3      689999999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |.+++-    +.++..+.|.++.++|||||.+++.-.
T Consensus       151 ~TlvLC----Sve~~~k~L~e~~rlLRpgG~iifiEH  183 (252)
T KOG4300|consen  151 CTLVLC----SVEDPVKQLNEVRRLLRPGGRIIFIEH  183 (252)
T ss_pred             EEEEEe----ccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            999654    577899999999999999999999843

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.58  E-value=1.8e-14  Score=122.79  Aligned_cols=122  Identities=23%  Similarity=0.244  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHh-cCCCCEEEEEcCCCCcc----HHHHHHcC------CCeEEEEecChhHHHHHHHHHHh------c-
Q 025059           16 LYEFAKTALIKIY-SHPYVTVCDLYCGAGVD----VDKWETAL------IANYIGIDVATSGIGEARDTWEN------Q-   77 (258)
Q Consensus        16 ~~~~~k~~li~~~-~~~~~~VLDlGcG~G~~----~~~~~~~~------~~~v~gvD~s~~~l~~a~~~~~~------~-   77 (258)
                      +.+.+...++... ..++.+|||+|||+|..    +..+....      ..+++|+|+|+.||+.|++..-.      . 
T Consensus        83 l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~  162 (264)
T smart00138       83 LEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLP  162 (264)
T ss_pred             HHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCC
Confidence            4455444444332 22457999999999973    33333321      24899999999999999885310      0 


Q ss_pred             -------------------CCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccC
Q 025059           78 -------------------RKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP  138 (258)
Q Consensus        78 -------------------~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp  138 (258)
                                         ....++.|.++|+.+.++      +.++||+|+|..+++|  -+.+....++++++++|+|
T Consensus       163 ~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~------~~~~fD~I~crnvl~y--f~~~~~~~~l~~l~~~L~p  234 (264)
T smart00138      163 KALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP------PLGDFDLIFCRNVLIY--FDEPTQRKLLNRFAEALKP  234 (264)
T ss_pred             HHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC------ccCCCCEEEechhHHh--CCHHHHHHHHHHHHHHhCC
Confidence                               001257899999977654      4689999999999987  3567788999999999999


Q ss_pred             CcEEEEE
Q 025059          139 GGYFLGI  145 (258)
Q Consensus       139 gG~~i~~  145 (258)
                      ||++++.
T Consensus       235 GG~L~lg  241 (264)
T smart00138      235 GGYLFLG  241 (264)
T ss_pred             CeEEEEE
Confidence            9999885

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.58  E-value=3.3e-13  Score=112.66  Aligned_cols=99  Identities=20%  Similarity=0.176  Sum_probs=79.0

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||+|||+|..+..++..+. .++|+|+|+.|++.|+++....+...++.+..+|+..         .+++||+|
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---------~~~~fD~v  131 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---------LLGRFDTV  131 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---------ccCCcCEE
Confidence            4678999999999999999887765 7999999999999999988765433368888888421         35789999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGG  140 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG  140 (258)
                      ++..++++  ...+....+++++.+.+++++
T Consensus       132 ~~~~~l~~--~~~~~~~~~l~~l~~~~~~~~  160 (230)
T PRK07580        132 VCLDVLIH--YPQEDAARMLAHLASLTRGSL  160 (230)
T ss_pred             EEcchhhc--CCHHHHHHHHHHHHhhcCCeE
Confidence            99988865  246678889999998775444

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.57  E-value=2.5e-14  Score=117.33  Aligned_cols=122  Identities=17%  Similarity=0.091  Sum_probs=90.4

Q ss_pred             HhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCC-CCCchhhhhhhcCC
Q 025059           27 IYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP-CAENFETQMQEKAN  104 (258)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~  104 (258)
                      .+..++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+. .++.++++|+ ...+  ..+  +++
T Consensus        36 ~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~--~~~--~~~  110 (202)
T PRK00121         36 LFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLL--DMF--PDG  110 (202)
T ss_pred             HcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHH--HHc--Ccc
Confidence            34446789999999999999988775 345899999999999999998876543 2689999997 3322  111  467


Q ss_pred             ceeEEEeccccccccC-C---HHHHHHHHHHHHhcccCCcEEEEEEcCchHHH
Q 025059          105 QADLVCCFQHLQMCFE-T---EERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~-~---~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~  153 (258)
                      +||+|++.+...+... +   ......+++++.++|+|||.+++.+++.....
T Consensus       111 ~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~  163 (202)
T PRK00121        111 SLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAE  163 (202)
T ss_pred             ccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHH
Confidence            8999998775432110 0   01246789999999999999999887765443

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.56  E-value=4.1e-14  Score=118.43  Aligned_cols=106  Identities=22%  Similarity=0.308  Sum_probs=88.3

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|||+|||+|.++..++... ..+++|+|+|+.+++.++++...     ++.++.+|+.+.++      ++++||+|
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~------~~~~fD~v  102 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-----NVQFICGDAEKLPL------EDSSFDLI  102 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-----CCeEEecchhhCCC------CCCceeEE
Confidence            34789999999999998887764 34799999999999999887652     57889999877655      56789999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~  151 (258)
                      ++..++|+    ..+...++.++.++|+|||.+++..+....
T Consensus       103 i~~~~l~~----~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~  140 (240)
T TIGR02072       103 VSNLALQW----CDDLSQALSELARVLKPGGLLAFSTFGPGT  140 (240)
T ss_pred             EEhhhhhh----ccCHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence            99998887    344678999999999999999999776644

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.56  E-value=1.4e-13  Score=103.47  Aligned_cols=106  Identities=13%  Similarity=0.028  Sum_probs=82.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      ..++.+|||+|||+|..+..+++. +..+++++|+|+.+++.++++....+.. ++.++..|+....-  .   ...+||
T Consensus        17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~--~---~~~~~D   90 (124)
T TIGR02469        17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALE--D---SLPEPD   90 (124)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccCh--h---hcCCCC
Confidence            346789999999999999999886 3468999999999999999887765433 67888888653110  0   246899


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      +|++....+       ....+++++.+.|+|||.++++..
T Consensus        91 ~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        91 RVFIGGSGG-------LLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             EEEECCcch-------hHHHHHHHHHHHcCCCCEEEEEec
Confidence            998865332       356899999999999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.56  E-value=4.7e-14  Score=120.96  Aligned_cols=101  Identities=20%  Similarity=0.351  Sum_probs=81.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC----CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      +..+|||+|||+|..+..++...    ...++|+|+|+.|++.|+++..      ++.+.++|+.+.++      ++++|
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~------~~~~~~~d~~~lp~------~~~sf  152 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP------QVTFCVASSHRLPF------ADQSL  152 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC------CCeEEEeecccCCC------cCCce
Confidence            55789999999999988887642    2379999999999999987642      57889999887776      57899


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHH
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~  154 (258)
                      |+|++.++.           ..+.++.++|+|||.+++..|....+..
T Consensus       153 D~I~~~~~~-----------~~~~e~~rvLkpgG~li~~~p~~~~l~e  189 (272)
T PRK11088        153 DAIIRIYAP-----------CKAEELARVVKPGGIVITVTPGPRHLFE  189 (272)
T ss_pred             eEEEEecCC-----------CCHHHHHhhccCCCEEEEEeCCCcchHH
Confidence            999986632           2357899999999999999988765543

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.56  E-value=1.7e-13  Score=109.44  Aligned_cols=111  Identities=18%  Similarity=0.198  Sum_probs=88.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCC-eEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|||+|||+|..+..++..... +++++|+++.+++.++++.+.++... +.+.+.|+.+..       ++++||+|
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~-------~~~~fD~I  102 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL-------PDGKFDLI  102 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC-------CTTCEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc-------cccceeEE
Confidence            6789999999999999988887654 79999999999999999998886543 899999985532       36899999


Q ss_pred             EeccccccccC-CHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +++-.++.... .......++....++|+|||.+++.....
T Consensus       103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~  143 (170)
T PF05175_consen  103 VSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH  143 (170)
T ss_dssp             EE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             EEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence            99877664221 22467899999999999999998775554

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK06922 hypothetical protein; Provisional

Probab=99.56  E-value=3.3e-14  Score=132.01  Aligned_cols=108  Identities=23%  Similarity=0.277  Sum_probs=88.3

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc--hhhhhhhcCCcee
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN--FETQMQEKANQAD  107 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~fD  107 (258)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+  .++.++++|+.+.+  +      ++++||
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f------edeSFD  489 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF------EKESVD  489 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc------CCCCEE
Confidence            5789999999999988877764 44699999999999999998875443  26788899986644  3      567999


Q ss_pred             EEEeccccccccC---------CHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          108 LVCCFQHLQMCFE---------TEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       108 ~V~~~~~l~~~~~---------~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +|++...+|+.+.         +.+....+++++.++|||||.+++..
T Consensus       490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9999988886432         24678999999999999999999973

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.55  E-value=3.7e-14  Score=121.60  Aligned_cols=107  Identities=23%  Similarity=0.245  Sum_probs=86.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      +.++.+|||+|||+|..+..++.. +. .+++|+|+++.|++.|+++....+.. ++.+.++|+...++      ++++|
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~------~~~~f  147 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPV------ADNSV  147 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCC------CCCce
Confidence            347899999999999877666554 33 47999999999999999987765433 68899999876555      56799


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+|++..++|+    ..+...+++++.++|+|||.+++..
T Consensus       148 D~Vi~~~v~~~----~~d~~~~l~~~~r~LkpGG~l~i~~  183 (272)
T PRK11873        148 DVIISNCVINL----SPDKERVFKEAFRVLKPGGRFAISD  183 (272)
T ss_pred             eEEEEcCcccC----CCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            99999988775    2345679999999999999999873

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.55  E-value=1.2e-13  Score=114.11  Aligned_cols=108  Identities=19%  Similarity=0.135  Sum_probs=84.0

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc-----------CCCceeEEEEcCCCCCchhhh
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFETQ   98 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~~~   98 (258)
                      +++.+|||+|||.|.++..++.++. +|+|+|+|+.+++.+.+.....           ....++++.++|+.+.+..  
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--  109 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA--  109 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc--
Confidence            5678999999999999999999888 8999999999999864422100           0123689999999764421  


Q ss_pred             hhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                         ..++||.|....++++  .+.+....+++.+.++|+|||.+++.
T Consensus       110 ---~~~~fD~i~D~~~~~~--l~~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       110 ---DLGPVDAVYDRAALIA--LPEEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             ---cCCCcCEEEechhhcc--CCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence               1357999988776664  35777889999999999999986655

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.54  E-value=8.2e-14  Score=116.67  Aligned_cols=107  Identities=24%  Similarity=0.311  Sum_probs=88.0

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++.+|||+|||+|..+..++...  ..+++++|+++.+++.++++........++.+..+|+.+.++      ..++||
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~D  123 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNSFD  123 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCCcc
Confidence            367899999999999999888775  369999999999999999988654333368899999876554      457899


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +|++..++|+    ..+...+++++.++|+|||.+++..
T Consensus       124 ~I~~~~~l~~----~~~~~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        124 AVTIAFGLRN----VPDIDKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             EEEEeccccc----CCCHHHHHHHHHHhccCCcEEEEEE
Confidence            9999888876    3347788999999999999998763

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.54  E-value=2.3e-13  Score=110.91  Aligned_cols=160  Identities=15%  Similarity=0.190  Sum_probs=104.2

Q ss_pred             HHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC--chhhhhhhcC
Q 025059           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQEKA  103 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  103 (258)
                      ...++++.+|||+|||+|.++..++......++|+|+|+++++.++++        ++.++++|+.+.  ++      ++
T Consensus         8 ~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~------~~   73 (194)
T TIGR02081         8 LNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAF------PD   73 (194)
T ss_pred             HHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhccccc------CC
Confidence            344567889999999999998888665545789999999999988642        457888887541  12      46


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCee
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES  183 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  183 (258)
                      ++||+|++..++|++    .+...+++++.+++   |..++++|+.........     ++.++.      .+       
T Consensus        74 ~sfD~Vi~~~~l~~~----~d~~~~l~e~~r~~---~~~ii~~p~~~~~~~~~~-----~~~~~~------~~-------  128 (194)
T TIGR02081        74 KSFDYVILSQTLQAT----RNPEEILDEMLRVG---RHAIVSFPNFGYWRVRWS-----ILTKGR------MP-------  128 (194)
T ss_pred             CCcCEEEEhhHhHcC----cCHHHHHHHHHHhC---CeEEEEcCChhHHHHHHH-----HHhCCc------cc-------
Confidence            789999999988873    34666777777654   456677776533322111     011110      00       


Q ss_pred             EEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChh
Q 025059          184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (258)
Q Consensus       184 ~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~  241 (258)
                          +.   ...     .|.+ +..    ....+.+.+.+.++++++||++++...+.
T Consensus       129 ----~~---~~~-----~~~~-~~~----~~~~~~s~~~~~~ll~~~Gf~v~~~~~~~  169 (194)
T TIGR02081       129 ----VT---GEL-----PYDW-YNT----PNIHFCTIADFEDLCGELNLRILDRAAFD  169 (194)
T ss_pred             ----cC---CCC-----Cccc-cCC----CCcccCcHHHHHHHHHHCCCEEEEEEEec
Confidence                00   000     0112 111    11246799999999999999999877664

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK08317 hypothetical protein; Provisional

Probab=99.54  E-value=1.3e-13  Score=115.32  Aligned_cols=108  Identities=25%  Similarity=0.338  Sum_probs=88.1

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..++.+|||+|||+|..+..++...  ..+++|+|+|+.+++.|+++....  ..++.+..+|+...++      .+++|
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~~~~   88 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPF------PDGSF   88 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCC------CCCCc
Confidence            4578899999999999998887753  468999999999999998884332  2268899999876555      46799


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |+|++..++++    ..+...+++++.++|+|||.+++..++
T Consensus        89 D~v~~~~~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         89 DAVRSDRVLQH----LEDPARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             eEEEEechhhc----cCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence            99999987776    344678999999999999999988654

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.52  E-value=1.6e-13  Score=118.58  Aligned_cols=110  Identities=20%  Similarity=0.164  Sum_probs=85.9

Q ss_pred             HHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      +..+..++.+|||+|||+|.++..++..+..+++|+|+|+.+++.|+++...++...++.+...+..  ..      ..+
T Consensus       153 l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~------~~~  224 (288)
T TIGR00406       153 LEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QP------IEG  224 (288)
T ss_pred             HHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cc------cCC
Confidence            3445567899999999999998888777777999999999999999999887655445566665531  11      356


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +||+|+++..       ...+..++.++.++|+|||.++++....
T Consensus       225 ~fDlVvan~~-------~~~l~~ll~~~~~~LkpgG~li~sgi~~  262 (288)
T TIGR00406       225 KADVIVANIL-------AEVIKELYPQFSRLVKPGGWLILSGILE  262 (288)
T ss_pred             CceEEEEecC-------HHHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence            8999998753       2346788999999999999999985543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.52  E-value=1.7e-13  Score=111.77  Aligned_cols=175  Identities=17%  Similarity=0.185  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHhcC---CCCEEEEEcCCCCccHHHHHHcCC---CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCC
Q 025059           17 YEFAKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALI---ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP   90 (258)
Q Consensus        17 ~~~~k~~li~~~~~---~~~~VLDlGcG~G~~~~~~~~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~   90 (258)
                      ++|+....-..+..   +..+|||+|||.|..+..+.+...   -.++++|.|+.+++..+++......  ++.-.+.|+
T Consensus        54 R~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~--~~~afv~Dl  131 (264)
T KOG2361|consen   54 RNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES--RVEAFVWDL  131 (264)
T ss_pred             hHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh--hhcccceec
Confidence            36765544332222   223799999999999999888633   2799999999999998887654322  556666777


Q ss_pred             CCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCC
Q 025059           91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSM  170 (258)
Q Consensus        91 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (258)
                      ....+...+  ..+++|+|++.|++-.  .+.+....+++++.++|||||.+++.......+.                 
T Consensus       132 t~~~~~~~~--~~~svD~it~IFvLSA--i~pek~~~a~~nl~~llKPGG~llfrDYg~~Dla-----------------  190 (264)
T KOG2361|consen  132 TSPSLKEPP--EEGSVDIITLIFVLSA--IHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLA-----------------  190 (264)
T ss_pred             cchhccCCC--CcCccceEEEEEEEec--cChHHHHHHHHHHHHHhCCCcEEEEeecccchHH-----------------
Confidence            665532222  5789999999998875  5688899999999999999999998754443221                 


Q ss_pred             CCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEE
Q 025059          171 KPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVE  236 (258)
Q Consensus       171 ~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~  236 (258)
                                    +++|..+    ..+  .-+|+..++++  .-|+.+.+.|.+++.++||..++
T Consensus       191 --------------qlRF~~~----~~i--~~nfYVRgDGT--~~YfF~~eeL~~~f~~agf~~~~  234 (264)
T KOG2361|consen  191 --------------QLRFKKG----QCI--SENFYVRGDGT--RAYFFTEEELDELFTKAGFEEVQ  234 (264)
T ss_pred             --------------HHhccCC----cee--ecceEEccCCc--eeeeccHHHHHHHHHhcccchhc
Confidence                          1122100    000  12233333332  34788999999999999998774

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.52  E-value=3.5e-13  Score=117.49  Aligned_cols=105  Identities=13%  Similarity=0.095  Sum_probs=87.4

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||||||+|..+..+++.. ..+++++|. +.+++.++++....+...+++++.+|+.+.++      +  .+|+
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~------~--~~D~  218 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY------P--EADA  218 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC------C--CCCE
Confidence            467899999999999999888874 358999997 78999999988877665579999999876443      2  3699


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |++...+|.  .+.+....+++++.++|+|||.+++.
T Consensus       219 v~~~~~lh~--~~~~~~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       219 VLFCRILYS--ANEQLSTIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             EEeEhhhhc--CChHHHHHHHHHHHHhcCCCCEEEEE
Confidence            998888886  34566789999999999999999887

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.51  E-value=5.5e-14  Score=104.95  Aligned_cols=113  Identities=22%  Similarity=0.214  Sum_probs=86.9

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      |.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+.++...+...+++++++|+....  +..  ..++||+|++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~--~~~~~D~Iv~   76 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPL--PDGKFDLIVT   76 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTC--TTT-EEEEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhc--cCceeEEEEE
Confidence            568999999999999999888756999999999999999999988765557999999974422  111  5689999999


Q ss_pred             ccccccccCCH----HHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          112 FQHLQMCFETE----ERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       112 ~~~l~~~~~~~----~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +-.........    .....+++.+.++|+|||.+++.+|+
T Consensus        77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  117 (117)
T PF13659_consen   77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA  117 (117)
T ss_dssp             --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            76544321111    24578999999999999999998764

...

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.51  E-value=3.3e-14  Score=114.10  Aligned_cols=102  Identities=28%  Similarity=0.294  Sum_probs=87.9

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      +..+|.|||||+|..+..+.++ +...++|+|.|++|++.|+++..      ++.|..+|+.+-.       +....|++
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp------~~~f~~aDl~~w~-------p~~~~dll   96 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP------DATFEEADLRTWK-------PEQPTDLL   96 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC------CCceecccHhhcC-------CCCccchh
Confidence            5689999999999998888887 56799999999999999998876      6789999986532       56789999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .++.++|++    ++-..++..+...|.|||.+.+..|+.
T Consensus        97 faNAvlqWl----pdH~~ll~rL~~~L~Pgg~LAVQmPdN  132 (257)
T COG4106          97 FANAVLQWL----PDHPELLPRLVSQLAPGGVLAVQMPDN  132 (257)
T ss_pred             hhhhhhhhc----cccHHHHHHHHHhhCCCceEEEECCCc
Confidence            999999994    445678888889999999999999987

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.50  E-value=8.9e-13  Score=117.10  Aligned_cols=119  Identities=16%  Similarity=0.122  Sum_probs=89.3

Q ss_pred             HHHHhcC--CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCC--ceeEEEEcCCCCCchhhh
Q 025059           24 LIKIYSH--PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQ   98 (258)
Q Consensus        24 li~~~~~--~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~   98 (258)
                      ++...++  .+.+|||+|||+|..+..++... ..+++++|+|+.|++.|+++++.+...  .++.+...|+... +   
T Consensus       219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~---  294 (378)
T PRK15001        219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V---  294 (378)
T ss_pred             HHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-C---
Confidence            3344444  24689999999999998887764 459999999999999999988765421  2678888887432 1   


Q ss_pred             hhhcCCceeEEEecccccccc-CCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059           99 MQEKANQADLVCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~-~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                         ...+||+|+|+-.+|... .+.....+++..+.++|+|||.+++.....
T Consensus       295 ---~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~  343 (378)
T PRK15001        295 ---EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH  343 (378)
T ss_pred             ---CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecC
Confidence               346899999987666421 233456789999999999999999885443

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.49  E-value=2.7e-14  Score=112.88  Aligned_cols=81  Identities=19%  Similarity=0.186  Sum_probs=66.4

Q ss_pred             EEEecChhHHHHHHHHHHhcC--CCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhc
Q 025059           58 IGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL  135 (258)
Q Consensus        58 ~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~  135 (258)
                      +|+|+|++|++.|+++.+...  ...+++++++|+.+.++      ++++||+|++.+++|+.    ++...++++++++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~------~~~~fD~v~~~~~l~~~----~d~~~~l~ei~rv   70 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF------DDCEFDAVTMGYGLRNV----VDRLRAMKEMYRV   70 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC------CCCCeeEEEecchhhcC----CCHHHHHHHHHHH
Confidence            589999999999988765322  12268999999988776      67899999999999873    4578999999999


Q ss_pred             ccCCcEEEEEEcC
Q 025059          136 LKPGGYFLGITPD  148 (258)
Q Consensus       136 LkpgG~~i~~~~~  148 (258)
                      |||||.+++....
T Consensus        71 LkpGG~l~i~d~~   83 (160)
T PLN02232         71 LKPGSRVSILDFN   83 (160)
T ss_pred             cCcCeEEEEEECC
Confidence            9999999887443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.49  E-value=4.9e-13  Score=113.48  Aligned_cols=103  Identities=17%  Similarity=0.056  Sum_probs=77.6

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHH--HHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR--DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .|.+|||||||+|..+..++..+...|+|+|.+...+.+.+  +++.+..  ..+.+....+.+.+       ..+.||+
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~--~~~~~lplgvE~Lp-------~~~~FDt  185 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD--PPVFELPLGVEDLP-------NLGAFDT  185 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC--ccEEEcCcchhhcc-------ccCCcCE
Confidence            68999999999999999999999989999999988776632  3333221  12222223333322       2578999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |.|..++.|    ..+.-..|.++++.|+|||.+++.+
T Consensus       186 VF~MGVLYH----rr~Pl~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  186 VFSMGVLYH----RRSPLDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             EEEeeehhc----cCCHHHHHHHHHHhhCCCCEEEEEE
Confidence            999998776    5667889999999999999999874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PLN03075 nicotianamine synthase; Provisional

Probab=99.48  E-value=7.5e-13  Score=113.26  Aligned_cols=108  Identities=14%  Similarity=0.062  Sum_probs=86.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHH--c-CCCeEEEEecChhHHHHHHHHHHh-cCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           31 PYVTVCDLYCGAGVDVDKWET--A-LIANYIGIDVATSGIGEARDTWEN-QRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~--~-~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ++.+|+|||||.|..+.-+..  . +.++++|+|+++++++.|++.+.. .+...++.|..+|+.+...      ..+.|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~------~l~~F  196 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE------SLKEY  196 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc------ccCCc
Confidence            678999999999866555443  2 446899999999999999998854 4444479999999866321      24689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |+|++. ++++  ...++...+++++.+.|+|||.+++-..
T Consensus       197 DlVF~~-ALi~--~dk~~k~~vL~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        197 DVVFLA-ALVG--MDKEEKVKVIEHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             CEEEEe-cccc--cccccHHHHHHHHHHhcCCCcEEEEecc
Confidence            999999 8887  2346788999999999999999998864

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.48  E-value=6.5e-13  Score=110.05  Aligned_cols=109  Identities=17%  Similarity=0.074  Sum_probs=84.0

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc-----------CCCceeEEEEcCCCCCchhh
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFET   97 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~~   97 (258)
                      .+++.+|||+|||.|.++..++..+. +|+|+|+|+.+++.+.+.....           ....++++.++|+.+.... 
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~-  112 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA-  112 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc-
Confidence            35678999999999999999999888 8999999999999874321100           0123688999999765321 


Q ss_pred             hhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                          ..+.||.|....+++.  .+.+....++..+.++|+|||.+++.
T Consensus       113 ----~~~~fd~v~D~~~~~~--l~~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        113 ----DLADVDAVYDRAALIA--LPEEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             ----cCCCeeEEEehHhHhh--CCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence                1358999988777764  36788999999999999999975543

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.47  E-value=8.1e-13  Score=106.34  Aligned_cols=107  Identities=14%  Similarity=0.107  Sum_probs=83.9

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|..+..++..+. +++++|+|+.+++.++++....+.  ++.+.++|+.+.        ..++||+|+
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~--------~~~~fD~Vi   87 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKG--------VRGKFDVIL   87 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccc--------cCCcccEEE
Confidence            457899999999999999888766 899999999999999998876543  678888997542        235899999


Q ss_pred             eccccccccC-----------------CHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          111 CFQHLQMCFE-----------------TEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       111 ~~~~l~~~~~-----------------~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ++...+..-.                 .......++.++.++|+|||.+++..+.
T Consensus        88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~  142 (179)
T TIGR00537        88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS  142 (179)
T ss_pred             ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence            9865543211                 1122577899999999999999887544

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.47  E-value=1.3e-12  Score=107.47  Aligned_cols=102  Identities=14%  Similarity=0.096  Sum_probs=79.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..++.+|||+|||+|..+..++...  .++++++|+++.+++.|++++...+...++.++.+|+.+...      ...+|
T Consensus        70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~------~~~~f  143 (205)
T PRK13944         70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE------KHAPF  143 (205)
T ss_pred             CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc------cCCCc
Confidence            3578899999999999887776642  358999999999999999988776543358899999865322      34689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+|++..+++.          +..++.+.|+|||.+++..
T Consensus       144 D~Ii~~~~~~~----------~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        144 DAIIVTAAAST----------IPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             cEEEEccCcch----------hhHHHHHhcCcCcEEEEEE
Confidence            99998876543          2246788999999998864

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.46  E-value=2.7e-12  Score=103.98  Aligned_cols=103  Identities=11%  Similarity=0.065  Sum_probs=81.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      ..++.+|||+|||+|..+..+++.. ..+++++|+|+.+++.|+++....+.. ++.+.++|+.. .+       .++||
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~-------~~~~D   99 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-EL-------PGKAD   99 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hc-------CcCCC
Confidence            3478899999999999998887763 358999999999999999888765432 68888888631 22       35799


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      +|++....++       +..++..+.++|+|||.+++..+
T Consensus       100 ~v~~~~~~~~-------~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287        100 AIFIGGSGGN-------LTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             EEEECCCccC-------HHHHHHHHHHhcCCCeEEEEEEe
Confidence            9998764432       46688999999999999988754

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.45  E-value=2.5e-12  Score=113.40  Aligned_cols=108  Identities=19%  Similarity=0.205  Sum_probs=87.3

Q ss_pred             CCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           32 YVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ..+|||+|||+|.++..++... ..+++++|+|+.|++.|+++++.++.  ...+...|+...        ..++||+|+
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~--------~~~~fDlIv  266 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD--------IKGRFDMII  266 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc--------cCCCccEEE
Confidence            4689999999999988887764 35899999999999999999887654  456777887431        247899999


Q ss_pred             eccccccccCC-HHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          111 CFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       111 ~~~~l~~~~~~-~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |+..+|..... ......++.++.++|+|||.+++.....
T Consensus       267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~  306 (342)
T PRK09489        267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (342)
T ss_pred             ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence            99888864332 4567899999999999999999886554

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.45  E-value=6.8e-13  Score=108.21  Aligned_cols=117  Identities=14%  Similarity=0.065  Sum_probs=87.0

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .+..+|||||||+|..+..++.. +...++|+|+++.+++.|+++....+.. ++.++++|+....  ... .+++++|.
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~--~~~-~~~~~~d~   90 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELL--DKF-FPDGSLSK   90 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHH--Hhh-CCCCceeE
Confidence            35578999999999999888876 3458999999999999999988776554 7899999985421  111 03568999


Q ss_pred             EEeccccccccCC----HHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          109 VCCFQHLQMCFET----EERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       109 V~~~~~l~~~~~~----~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      |++.+.-.+.-..    .-....++++++++|+|||.+++.+.+..
T Consensus        91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~  136 (194)
T TIGR00091        91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP  136 (194)
T ss_pred             EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence            9988754431000    00125789999999999999998876654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.45  E-value=7.3e-13  Score=122.25  Aligned_cols=105  Identities=19%  Similarity=0.215  Sum_probs=84.5

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||||||+|.++..++... .+++|+|+|+.|++.+++.....   .++.++++|+....+.  +  ++++||+|+
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~---~~i~~~~~d~~~~~~~--~--~~~~fD~I~  108 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHY---KNVKFMCADVTSPDLN--I--SDGSVDLIF  108 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccC---CceEEEEecccccccC--C--CCCCEEEEe
Confidence            56799999999999999988764 48999999999999876543221   2688999998642210  1  567999999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +.++++++  +.+....+++++.++|+|||++++.
T Consensus       109 ~~~~l~~l--~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        109 SNWLLMYL--SDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             hhhhHHhC--CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            99999873  4566889999999999999999886

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=6.6e-13  Score=113.32  Aligned_cols=109  Identities=18%  Similarity=0.203  Sum_probs=83.4

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (258)
                      ++.++..++.+|||+|||+|.++...++.+..+++|+|++|.+++.|+++...++....+.....+....+       ..
T Consensus       155 ~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-------~~  227 (300)
T COG2264         155 ALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-------EN  227 (300)
T ss_pred             HHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-------cc
Confidence            34555668999999999999999999999998999999999999999999988753211111112111111       34


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ++||+|+++- +      .+-+..+...+.++|+|||+++++-
T Consensus       228 ~~~DvIVANI-L------A~vl~~La~~~~~~lkpgg~lIlSG  263 (300)
T COG2264         228 GPFDVIVANI-L------AEVLVELAPDIKRLLKPGGRLILSG  263 (300)
T ss_pred             CcccEEEehh-h------HHHHHHHHHHHHHHcCCCceEEEEe
Confidence            6999999876 2      3346789999999999999999984

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.44  E-value=6.2e-13  Score=114.34  Aligned_cols=106  Identities=25%  Similarity=0.316  Sum_probs=83.4

Q ss_pred             HHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      .++..+..++.+|||+|||+|.++...++.+..+++|+|+++.+++.|+++...++...++.+.  ..  ...      .
T Consensus       153 ~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~--~~~------~  222 (295)
T PF06325_consen  153 ELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LS--EDL------V  222 (295)
T ss_dssp             HHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CT--SCT------C
T ss_pred             HHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Ee--ccc------c
Confidence            4456677889999999999999999999999989999999999999999999888765444432  11  112      3


Q ss_pred             CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+||+|+++-.       ..-+..++..+.++|+|||.++++
T Consensus       223 ~~~~dlvvANI~-------~~vL~~l~~~~~~~l~~~G~lIlS  258 (295)
T PF06325_consen  223 EGKFDLVVANIL-------ADVLLELAPDIASLLKPGGYLILS  258 (295)
T ss_dssp             CS-EEEEEEES--------HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred             cccCCEEEECCC-------HHHHHHHHHHHHHhhCCCCEEEEc
Confidence            589999998762       344778899999999999999998

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.44  E-value=1.1e-12  Score=111.15  Aligned_cols=101  Identities=20%  Similarity=0.212  Sum_probs=76.8

Q ss_pred             HhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ....++.+|||+|||+|.++..+...+..+++|+|+|+.+++.|+++...++....+.+..+              +.+|
T Consensus       115 ~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~--------------~~~f  180 (250)
T PRK00517        115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG--------------DLKA  180 (250)
T ss_pred             hhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------------CCCc
Confidence            34567899999999999888877776766799999999999999999876643212222111              2279


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |+|+++..       ......++.++.++|+|||.++++...
T Consensus       181 D~Vvani~-------~~~~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        181 DVIVANIL-------ANPLLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             CEEEEcCc-------HHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence            99988652       234678899999999999999998543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.44  E-value=4.2e-12  Score=103.88  Aligned_cols=111  Identities=13%  Similarity=0.055  Sum_probs=85.0

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..++.+|||+|||+|.++..++..  +..+++++|+++.+++.|+++....+...++.++++|+.+.     ++...+.|
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~-----l~~~~~~~  112 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI-----LFTINEKF  112 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-----HhhcCCCC
Confidence            447899999999999998887664  33589999999999999999887765333688888887432     11124689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~  151 (258)
                      |.|++...       ......+++.+.++|+|||.+++..+....
T Consensus       113 D~V~~~~~-------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~  150 (198)
T PRK00377        113 DRIFIGGG-------SEKLKEIISASWEIIKKGGRIVIDAILLET  150 (198)
T ss_pred             CEEEECCC-------cccHHHHHHHHHHHcCCCcEEEEEeecHHH
Confidence            99988542       234678899999999999999987665543

>PRK14967 putative methyltransferase; Provisional

Probab=99.44  E-value=2.8e-12  Score=106.84  Aligned_cols=112  Identities=19%  Similarity=0.140  Sum_probs=84.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|..+..++..+..+++++|+|+.+++.++++....+.  ++.++++|+... +      +.++||+
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~------~~~~fD~  104 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-V------EFRPFDV  104 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-c------cCCCeeE
Confidence            457889999999999998888776656999999999999999988876543  678888887542 2      4578999


Q ss_pred             EEecccccccc-----------------CCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          109 VCCFQHLQMCF-----------------ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~~l~~~~-----------------~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |+++-..+...                 .....+..+++++.++|+|||.+++.....
T Consensus       105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~  162 (223)
T PRK14967        105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL  162 (223)
T ss_pred             EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            99874222100                 112235678899999999999999864443

>PRK04266 fibrillarin; Provisional

Probab=99.43  E-value=2.9e-12  Score=106.67  Aligned_cols=108  Identities=17%  Similarity=0.110  Sum_probs=80.0

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      +.++.+|||+|||+|..+..++.. +.+.|+|+|+++.|++.+.++.....   ++.++.+|+........   -.++||
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~---nv~~i~~D~~~~~~~~~---l~~~~D  143 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERK---NIIPILADARKPERYAH---VVEKVD  143 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcC---CcEEEECCCCCcchhhh---ccccCC
Confidence            348899999999999999888776 33589999999999998877665432   67889999864211011   135699


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +|++...      .......++.++.++|||||.++++.+.
T Consensus       144 ~i~~d~~------~p~~~~~~L~~~~r~LKpGG~lvI~v~~  178 (226)
T PRK04266        144 VIYQDVA------QPNQAEIAIDNAEFFLKDGGYLLLAIKA  178 (226)
T ss_pred             EEEECCC------ChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            9975432      2333456789999999999999997553

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.42  E-value=3.4e-12  Score=105.20  Aligned_cols=116  Identities=17%  Similarity=0.098  Sum_probs=81.6

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhh--hhcCC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM--QEKAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~  104 (258)
                      +.++.+|||||||+|.++..+++..  .+.|+|+|+++ |.     .   .   .++.++++|+.+....+.+  +...+
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~---~---~~v~~i~~D~~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----P---I---VGVDFLQGDFRDELVLKALLERVGDS  116 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----C---C---CCcEEEecCCCChHHHHHHHHHhCCC
Confidence            4688899999999999998887763  35899999988 21     1   1   1578999999875421111  01467


Q ss_pred             ceeEEEeccccccccCCH-H------HHHHHHHHHHhcccCCcEEEEEEcCchHHHHHH
Q 025059          105 QADLVCCFQHLQMCFETE-E------RARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~-~------~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~  156 (258)
                      +||+|++..+.++.-... +      ....+++++.++|+|||.|++.+..+..+.+.+
T Consensus       117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l  175 (209)
T PRK11188        117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYL  175 (209)
T ss_pred             CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHH
Confidence            899999987665421111 1      125789999999999999999877665444333

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.42  E-value=3.6e-12  Score=105.38  Aligned_cols=101  Identities=13%  Similarity=0.044  Sum_probs=79.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..++.+|||+|||+|..+..++.. + .++++++|+++++++.|++++...+.. ++.++++|+.....      ..+.|
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~~------~~~~f  146 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGYE------ENAPY  146 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCC------cCCCc
Confidence            458899999999999988877765 2 359999999999999999998866532 68999999865432      35789


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+|++..+.+.          +...+.+.|+|||.+++..
T Consensus       147 D~I~~~~~~~~----------~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        147 DRIYVTAAGPD----------IPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CEEEECCCccc----------chHHHHHhhCCCcEEEEEE
Confidence            99988765432          2245677899999998864

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.41  E-value=4.1e-12  Score=105.26  Aligned_cols=101  Identities=12%  Similarity=0.043  Sum_probs=79.5

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..++.+|||||||+|..+..++...  .++++++|+++.+++.|++++...+.. ++.++++|+.....      ...+|
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~------~~~~f  147 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWE------PLAPY  147 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCc------ccCCC
Confidence            4578999999999999998887763  246999999999999999999876542 68999999865322      34689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+|++......          +...+.+.|+|||++++..
T Consensus       148 D~Ii~~~~~~~----------~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       148 DRIYVTAAGPK----------IPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             CEEEEcCCccc----------ccHHHHHhcCcCcEEEEEE
Confidence            99988765433          3355788999999998864

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.41  E-value=3.3e-12  Score=112.46  Aligned_cols=119  Identities=17%  Similarity=0.107  Sum_probs=91.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .+++.+|||+|||+|..+...+..+. .++|+|+++.|+..|+.+++..+.. ++.+.++|+.+.++      .+++||+
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~-~i~~~~~D~~~l~~------~~~~~D~  251 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIE-DFFVKRGDATKLPL------SSESVDA  251 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCC-CCeEEecchhcCCc------ccCCCCE
Confidence            45788999999999998887766554 8999999999999999988776543 37889999877665      4679999


Q ss_pred             EEecccccc--cc---CCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHH
Q 025059          109 VCCFQHLQM--CF---ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (258)
Q Consensus       109 V~~~~~l~~--~~---~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~  155 (258)
                      |++......  ..   ........++.++.++|+|||.+++.+|+...+.+.
T Consensus       252 Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~  303 (329)
T TIGR01177       252 IATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESL  303 (329)
T ss_pred             EEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHH
Confidence            998632210  00   112346889999999999999999998887555443

This family is found exclusively in the Archaea.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.39  E-value=1.8e-11  Score=105.46  Aligned_cols=112  Identities=18%  Similarity=0.205  Sum_probs=85.3

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++....+...++.++++|+.+. +      +.++||+|
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~------~~~~fD~I  193 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-L------PGRKYDLI  193 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-c------CCCCccEE
Confidence            45789999999999999988763 4599999999999999999988775544789999997532 2      34589999


Q ss_pred             Eecccc-------------cc----c----cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHL-------------QM----C----FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l-------------~~----~----~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +++-..             ++    +    -.+.+..+.++.++.++|+|||.+++.+...
T Consensus       194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~  254 (284)
T TIGR03533       194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS  254 (284)
T ss_pred             EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence            986210             00    0    0112345788999999999999999987654

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.37  E-value=9.2e-12  Score=103.07  Aligned_cols=113  Identities=11%  Similarity=-0.001  Sum_probs=89.0

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHh-----------cCCCceeEEEEcCCCCCchhhh
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN-----------QRKNFIAEFFEADPCAENFETQ   98 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----------~~~~~~~~~~~~d~~~~~~~~~   98 (258)
                      +++.+||..|||.|.++..++..|. .|+|+|+|+.+++.+.+....           ...+.++++.++|+.+.+... 
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~-  119 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA-  119 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc-
Confidence            4678999999999999999999998 799999999999998663210           011337899999998754210 


Q ss_pred             hhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                        ...+.||+|.-..+++.  .+.+...+..+.+.++|+|||.+++.+.+
T Consensus       120 --~~~~~fD~VyDra~~~A--lpp~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        120 --NNLPVFDIWYDRGAYIA--LPNDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             --cccCCcCeeeeehhHhc--CCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence              02368999988877775  36788999999999999999999887543

>PRK14968 putative methyltransferase; Provisional

Probab=99.36  E-value=2.1e-11  Score=98.40  Aligned_cols=112  Identities=18%  Similarity=0.190  Sum_probs=84.7

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCce-eEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.++++....+...+ +.++++|+.+. +      ...+||+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~------~~~~~d~   93 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-F------RGDKFDV   93 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-c------cccCceE
Confidence            467899999999999999988874 5999999999999999988876543212 78888887542 2      3448999


Q ss_pred             EEecccccc-----------------ccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          109 VCCFQHLQM-----------------CFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~~l~~-----------------~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |+++.....                 ...+......+++++.++|+|||.+++..++.
T Consensus        94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~  151 (188)
T PRK14968         94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL  151 (188)
T ss_pred             EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence            987643211                 01123446788999999999999998886653

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.35  E-value=2.9e-11  Score=105.23  Aligned_cols=110  Identities=18%  Similarity=0.196  Sum_probs=84.0

Q ss_pred             CEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      .+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++....+...++.++++|+.+ .+      +.++||+|++
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l------~~~~fDlIvs  207 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-AL------PGRRYDLIVS  207 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hC------CCCCccEEEE
Confidence            689999999999998887763 458999999999999999998876554468999999743 12      3468999998


Q ss_pred             cccc-------------cc----c----cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          112 FQHL-------------QM----C----FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       112 ~~~l-------------~~----~----~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +-..             ++    +    -.+.+....++.++.++|+|||.+++.+...
T Consensus       208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~  266 (307)
T PRK11805        208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS  266 (307)
T ss_pred             CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence            6210             00    0    0112345788999999999999999986554

>PTZ00146 fibrillarin; Provisional

Probab=99.35  E-value=2e-11  Score=104.24  Aligned_cols=105  Identities=14%  Similarity=0.086  Sum_probs=76.6

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      +.|+.+|||+|||+|.++..++..-  ...|+++|+|++|++...+......   ++.++..|+.....   +....+++
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~---NI~~I~~Da~~p~~---y~~~~~~v  203 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRP---NIVPIIEDARYPQK---YRMLVPMV  203 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcC---CCEEEECCccChhh---hhcccCCC
Confidence            4588999999999999999998872  4589999999986655444433221   67888999764211   11123579


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|++..+      ...+...++.++.++|||||.|++.
T Consensus       204 DvV~~Dva------~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        204 DVIFADVA------QPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CEEEEeCC------CcchHHHHHHHHHHhccCCCEEEEE
Confidence            99987653      1335667778899999999999985

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.34  E-value=1.3e-11  Score=109.40  Aligned_cols=113  Identities=15%  Similarity=0.130  Sum_probs=87.5

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .+..+||||||+|..+..++... ...++|+|+++.+++.|.++....++. ++.++++|+....  ..+  +++++|.|
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll--~~~--~~~s~D~I  196 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLL--ELL--PSNSVEKI  196 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhh--hhC--CCCceeEE
Confidence            35689999999999999998873 458999999999999999998776554 6899999975321  112  57899999


Q ss_pred             EeccccccccCCHH----HHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          110 CCFQHLQMCFETEE----RARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       110 ~~~~~l~~~~~~~~----~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      .+.+...+  ....    ....++..++++|+|||.+.+.+-+..
T Consensus       197 ~lnFPdPW--~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~  239 (390)
T PRK14121        197 FVHFPVPW--DKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL  239 (390)
T ss_pred             EEeCCCCc--cccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence            98875543  1111    126899999999999999988765553

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.33  E-value=2.8e-12  Score=104.76  Aligned_cols=199  Identities=15%  Similarity=0.151  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059           17 YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (258)
Q Consensus        17 ~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (258)
                      ..|++...  ...+....++|+|||+|..++-++.. +.+|+|+|+|+.||+.|++..+.............++  .++.
T Consensus        21 tdw~~~ia--~~~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~--v~L~   95 (261)
T KOG3010|consen   21 TDWFKKIA--SRTEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEM--VDLL   95 (261)
T ss_pred             HHHHHHHH--hhCCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccccc--cccc
Confidence            36666543  22222338999999999666666554 6699999999999999988765543322233333333  2221


Q ss_pred             hhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCc-EEEEEEcC-----ch---HHHHHHHHhHHhhhcCC
Q 025059           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPD-----SS---TIWAKYQKNVEAYHNRS  167 (258)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG-~~i~~~~~-----~~---~~~~~~~~~~~~~~~~~  167 (258)
                          ..+++.|+|+|..++|+ |.    +..+.+++.++||+.| .+.+-..+     .+   .++.++.....|+|-. 
T Consensus        96 ----g~e~SVDlI~~Aqa~HW-Fd----le~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~~~p~~r~-  165 (261)
T KOG3010|consen   96 ----GGEESVDLITAAQAVHW-FD----LERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDSTLPYWRS-  165 (261)
T ss_pred             ----CCCcceeeehhhhhHHh-hc----hHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhccCchhhh-
Confidence                13789999999999997 44    7889999999999987 44444222     22   2333322222222100 


Q ss_pred             CCCCCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCc--cCCCccccchHHHHHHHHHcCcEEEEe
Q 025059          168 SSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDI--SAETQCLVHFPSLIRLAREAGLEYVEI  237 (258)
Q Consensus       168 ~~~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~--~~~~e~lv~~~~l~~~~~~~Gf~~~~~  237 (258)
                            ..-|.++..+-++.|..+..-.+..|..+.+......  ....+|+-+|+...+ +++.|.+++..
T Consensus       166 ------~~~n~~fdgy~~~~F~~e~v~~~s~~~~~~l~~~~~lsl~~F~~~~rsws~~~~-akek~~e~i~~  230 (261)
T KOG3010|consen  166 ------PLRNLLFDGYKTIEFPFESVGMGSQGKPKTLEIPHTLSLEGFSGFLRSWSAYKE-AKEKGLELIAD  230 (261)
T ss_pred             ------HHHHhhccccccccccccccCCCCCCCceeehhhHHHHHHHHHHHHhCcHHHHH-HHhcChHHHHH
Confidence                  0001122223345565443333455555544222111  112345667777766 44578876643

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.33  E-value=3.1e-11  Score=99.77  Aligned_cols=101  Identities=12%  Similarity=0.049  Sum_probs=78.6

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|..+..++... .+++++|+++.+++.|++++...+.. ++.+.++|..+...      ..++||+
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------~~~~fD~  147 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWP------AYAPFDR  147 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCC------cCCCcCE
Confidence            3478999999999999887666654 48999999999999999998876443 58899999754211      2478999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |++..+.+.          +...+.+.|+|||.+++...
T Consensus       148 I~~~~~~~~----------~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        148 ILVTAAAPE----------IPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EEEccCchh----------hhHHHHHhcCCCcEEEEEEc
Confidence            998775443          23457889999999998765

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.33  E-value=1.2e-11  Score=102.93  Aligned_cols=134  Identities=17%  Similarity=0.130  Sum_probs=99.4

Q ss_pred             HHHHHHHHhcC--CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059           20 AKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (258)
Q Consensus        20 ~k~~li~~~~~--~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (258)
                      +-++|+..+.+  ...+|||||||+|.....++.+ ...+++|||+++++.+.|++..+.+.+..+++++++|+.+... 
T Consensus        31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~-  109 (248)
T COG4123          31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK-  109 (248)
T ss_pred             cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh-
Confidence            34567777765  4678999999999988888877 4479999999999999999999888877799999999855221 


Q ss_pred             hhhhhcCCceeEEEecccccccc--------------CCHHHHHHHHHHHHhcccCCcEEEEEEcCc--hHHHHHHH
Q 025059           97 TQMQEKANQADLVCCFQHLQMCF--------------ETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ  157 (258)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~~--------------~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~--~~~~~~~~  157 (258)
                       ..  ...+||+|+|+-...-.-              +..-.++.+++...++|||||.+.+..+..  ..+...++
T Consensus       110 -~~--~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~  183 (248)
T COG4123         110 -AL--VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLK  183 (248)
T ss_pred             -cc--cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHH
Confidence             11  345799999974322110              111236889999999999999998885544  23444444

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.32  E-value=3.7e-11  Score=98.11  Aligned_cols=109  Identities=20%  Similarity=0.218  Sum_probs=81.4

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|..+..++.. +..+++++|+|+.+++.++++.+..+.. +++++++|+.+. + ..   ....+|.
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~-~-~~---~~~~~d~  112 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPEC-L-AQ---LAPAPDR  112 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHH-H-hh---CCCCCCE
Confidence            47889999999999998888754 3469999999999999999988765432 688999987431 1 01   1234576


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~  152 (258)
                      |++..        ......++.++.++|+|||.+++..++...+
T Consensus       113 v~~~~--------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~  148 (196)
T PRK07402        113 VCIEG--------GRPIKEILQAVWQYLKPGGRLVATASSLEGL  148 (196)
T ss_pred             EEEEC--------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHH
Confidence            64422        1235788999999999999999998876443

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.32  E-value=4e-11  Score=101.29  Aligned_cols=110  Identities=20%  Similarity=0.219  Sum_probs=83.4

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..+.+|||+|||+|..+..++.. +..+++|+|+++.+++.|+++....+.. ++.++++|+.+ .+      +.++||+
T Consensus        86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~------~~~~fD~  157 (251)
T TIGR03534        86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE-PL------PGGKFDL  157 (251)
T ss_pred             cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc-cC------cCCceeE
Confidence            34568999999999999998876 3458999999999999999988776543 68999999855 22      4678999


Q ss_pred             EEecccccc------cc----------------CCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          109 VCCFQHLQM------CF----------------ETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       109 V~~~~~l~~------~~----------------~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |+++...+.      ..                ........++.++.++|+|||.+++...
T Consensus       158 Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~  218 (251)
T TIGR03534       158 IVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG  218 (251)
T ss_pred             EEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence            998543221      00                0012245789999999999999998754

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.31  E-value=2.5e-12  Score=104.25  Aligned_cols=140  Identities=19%  Similarity=0.305  Sum_probs=100.1

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      -.++||||||||-....+...- .+++|+|||.+|++.|.++--      --.+.++|+..  |.+..  ..+.||+|++
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg~------YD~L~~Aea~~--Fl~~~--~~er~DLi~A  194 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKGL------YDTLYVAEAVL--FLEDL--TQERFDLIVA  194 (287)
T ss_pred             cceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhccc------hHHHHHHHHHH--Hhhhc--cCCcccchhh
Confidence            4689999999998777775443 489999999999999887632      12334444321  21111  4689999999


Q ss_pred             ccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEeccc
Q 025059          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE  191 (258)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~~~  191 (258)
                      .-++.|    ...++.++.-+...|+|||.|.++.-+...                                        
T Consensus       195 aDVl~Y----lG~Le~~~~~aa~~L~~gGlfaFSvE~l~~----------------------------------------  230 (287)
T COG4976         195 ADVLPY----LGALEGLFAGAAGLLAPGGLFAFSVETLPD----------------------------------------  230 (287)
T ss_pred             hhHHHh----hcchhhHHHHHHHhcCCCceEEEEecccCC----------------------------------------
Confidence            998888    566889999999999999999987433210                                        


Q ss_pred             CCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCC
Q 025059          192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN  239 (258)
Q Consensus       192 ~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~  239 (258)
                            .|.   |-+..    ...|-++...++++++..||+++....
T Consensus       231 ------~~~---f~l~p----s~RyAH~~~YVr~~l~~~Gl~~i~~~~  265 (287)
T COG4976         231 ------DGG---FVLGP----SQRYAHSESYVRALLAASGLEVIAIED  265 (287)
T ss_pred             ------CCC---eecch----hhhhccchHHHHHHHHhcCceEEEeec
Confidence                  010   22222    234678889999999999999997654

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.31  E-value=3.3e-11  Score=97.72  Aligned_cols=109  Identities=17%  Similarity=0.123  Sum_probs=76.2

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh--hcCC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~  104 (258)
                      .+++.+|||+|||+|..+..++..  +..+++++|+|+.+      .  .    .++.++++|+.+....+.+.  .+.+
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~--~----~~i~~~~~d~~~~~~~~~l~~~~~~~   97 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P--I----ENVDFIRGDFTDEEVLNKIRERVGDD   97 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c--C----CCceEEEeeCCChhHHHHHHHHhCCC
Confidence            458899999999999998888765  33479999999865      1  1    15778889986643211111  1456


Q ss_pred             ceeEEEecccccc----ccCC---HHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          105 QADLVCCFQHLQM----CFET---EERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       105 ~fD~V~~~~~l~~----~~~~---~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +||+|++..+.+.    ....   .+....++.++.++|+|||.+++.....
T Consensus        98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~  149 (188)
T TIGR00438        98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG  149 (188)
T ss_pred             CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence            8999998654321    1111   1335789999999999999999975544

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.31  E-value=5.7e-11  Score=102.53  Aligned_cols=110  Identities=15%  Similarity=0.276  Sum_probs=84.2

Q ss_pred             CEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      .+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++....+...++.++++|+.+. +      +..+||+|++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~------~~~~fDlIvs  188 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-L------AGQKIDIIVS  188 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-C------cCCCccEEEE
Confidence            689999999999998888764 3599999999999999999987765543589999998542 2      2348999998


Q ss_pred             ccc-------------ccc----c----cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          112 FQH-------------LQM----C----FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       112 ~~~-------------l~~----~----~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +-.             .++    +    -.+....+.++.++.+.|+|||++++.+...
T Consensus       189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~  247 (284)
T TIGR00536       189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW  247 (284)
T ss_pred             CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence            521             111    0    0112357889999999999999999986654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.30  E-value=3.9e-11  Score=85.96  Aligned_cols=103  Identities=24%  Similarity=0.262  Sum_probs=81.0

Q ss_pred             EEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 025059           34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (258)
Q Consensus        34 ~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~  113 (258)
                      +|||+|||+|..+..++.....+++++|+++.+++.+++...... ..++.+...|+.+...     ...+++|+|++..
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~d~i~~~~   74 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPP-----EADESFDVIISDP   74 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhcc-----ccCCceEEEEEcc
Confidence            489999999999988877555699999999999998885333221 2367888888765432     1357899999988


Q ss_pred             ccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       114 ~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+++.   .+....+++.+.+.|+|||.++++
T Consensus        75 ~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          75 PLHHL---VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            76642   667889999999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=7.7e-11  Score=100.26  Aligned_cols=117  Identities=19%  Similarity=0.158  Sum_probs=88.7

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .+.+|||+|||.|-+...+++.. ..+++.+|++..+++.|++++..+... +..++..|+.+..        .++||.|
T Consensus       158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~v--------~~kfd~I  228 (300)
T COG2813         158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEPV--------EGKFDLI  228 (300)
T ss_pred             CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEecccccc--------cccccEE
Confidence            35599999999999999888874 469999999999999999999877543 2256777764432        3499999


Q ss_pred             EeccccccccCCHH-HHHHHHHHHHhcccCCcEEEEEEcCchHHHHHH
Q 025059          110 CCFQHLQMCFETEE-RARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (258)
Q Consensus       110 ~~~~~l~~~~~~~~-~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~  156 (258)
                      +|+-.+|--..... -..++++...+.|++||.+.+...........+
T Consensus       229 isNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L  276 (300)
T COG2813         229 ISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKL  276 (300)
T ss_pred             EeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHH
Confidence            99998885222111 235899999999999999998866554444333

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.29  E-value=7.8e-11  Score=105.19  Aligned_cols=112  Identities=17%  Similarity=0.095  Sum_probs=83.2

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      +++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+.  ++.++++|+.+..+.     ..++||+
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~-----~~~~FDL  322 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMP-----SEGKWDI  322 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccc-----cCCCccE
Confidence            45679999999999998888765 456899999999999999999876643  789999998553220     2357999


Q ss_pred             EEecccccc-----------------c----cCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQM-----------------C----FETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~-----------------~----~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |+|+-....                 +    -...+-.+.++..+.+.|+|||.+++....
T Consensus       323 IVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~  383 (423)
T PRK14966        323 IVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF  383 (423)
T ss_pred             EEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence            999642100                 0    011233568888889999999998876543

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.28  E-value=7.4e-11  Score=95.23  Aligned_cols=113  Identities=19%  Similarity=0.186  Sum_probs=85.5

Q ss_pred             HHHHHHhcCC--CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC-Cchhhh
Q 025059           22 TALIKIYSHP--YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQ   98 (258)
Q Consensus        22 ~~li~~~~~~--~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~   98 (258)
                      ..|....++.  +.-|||||||+|-...-+...+. ..+|+|||+.|++.|.++--      .-.++.+|+-. .++   
T Consensus        39 RaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~------egdlil~DMG~Glpf---  108 (270)
T KOG1541|consen   39 RALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL------EGDLILCDMGEGLPF---  108 (270)
T ss_pred             HHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh------hcCeeeeecCCCCCC---
Confidence            3444444554  57799999999987777766674 89999999999999987432      22577777643 344   


Q ss_pred             hhhcCCceeEEEeccccccccC-------CHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059           99 MQEKANQADLVCCFQHLQMCFE-------TEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~-------~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                         ++++||.|++..++++.+.       +...+..++..+..+|++|+..++..-
T Consensus       109 ---rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY  161 (270)
T KOG1541|consen  109 ---RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY  161 (270)
T ss_pred             ---CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence               7899999998887766533       335678889999999999999999944

>PRK04457 spermidine synthase; Provisional

Probab=99.28  E-value=1.1e-10  Score=99.56  Aligned_cols=122  Identities=13%  Similarity=0.126  Sum_probs=85.8

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .+++.+|||||||+|..+..++.. +..+++++|+++++++.|++.+.......+++++++|+.+  +   +....++||
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~--~---l~~~~~~yD  138 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE--Y---IAVHRHSTD  138 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH--H---HHhCCCCCC
Confidence            345689999999999988888766 4468999999999999999987643323378999999743  1   111346899


Q ss_pred             EEEecccccc-ccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHH
Q 025059          108 LVCCFQHLQM-CFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (258)
Q Consensus       108 ~V~~~~~l~~-~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~  156 (258)
                      +|++.. .+. .....-....+++++.++|+|||++++...........+
T Consensus       139 ~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~  187 (262)
T PRK04457        139 VILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRY  187 (262)
T ss_pred             EEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHH
Confidence            998743 111 001011236899999999999999999755544333333

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.27  E-value=7.8e-11  Score=105.74  Aligned_cols=125  Identities=16%  Similarity=0.143  Sum_probs=89.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|||+|||+|.++...+..+..+++++|+|+.+++.|++++..++.. .+++++++|+.+.  ...+....++||+|
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~--l~~~~~~~~~fDlV  297 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL--LRTYRDRGEKFDVI  297 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH--HHHHHhcCCCCCEE
Confidence            57899999999999887766666669999999999999999999887654 2689999998542  11221134689999


Q ss_pred             EeccccccccCCH-------HHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHh
Q 025059          110 CCFQHLQMCFETE-------ERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN  159 (258)
Q Consensus       110 ~~~~~l~~~~~~~-------~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~  159 (258)
                      ++.-..  ...+.       .....++..+.++|+|||.++....++..-.+.+.+.
T Consensus       298 ilDPP~--f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~  352 (396)
T PRK15128        298 VMDPPK--FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKI  352 (396)
T ss_pred             EECCCC--CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHH
Confidence            986321  11111       3456667788999999999998766543223334443

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.25  E-value=1.3e-10  Score=99.66  Aligned_cols=109  Identities=20%  Similarity=0.241  Sum_probs=82.2

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++.. .....++.++++|+... +      +.++||+
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~------~~~~fD~  178 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-L------PGGRFDL  178 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-C------CCCceeE
Confidence            467899999999999998887764 4699999999999999999887 22223789999998432 1      2478999


Q ss_pred             EEecccccc------------------c----cCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          109 VCCFQHLQM------------------C----FETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       109 V~~~~~l~~------------------~----~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+++....-                  +    ....+....++.++.++|+|||.+++..
T Consensus       179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            998532110                  0    0123446788999999999999999864

>PRK00811 spermidine synthase; Provisional

Probab=99.24  E-value=1.2e-10  Score=100.36  Aligned_cols=113  Identities=13%  Similarity=0.093  Sum_probs=83.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcC----CCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      +.+.+||+||||+|..+..+++. +..+++++|+++.+++.|++.+....    ...+++++.+|+..  +   +....+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~--~---l~~~~~  149 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK--F---VAETEN  149 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH--H---HhhCCC
Confidence            45689999999999999988876 55699999999999999999876421    13378999999743  2   112467


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      +||+|++-..-++.....-....+++.+.++|+|||++++...
T Consensus       150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        150 SFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             cccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            9999998653332111011237889999999999999988743

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.24  E-value=3.9e-10  Score=89.52  Aligned_cols=121  Identities=16%  Similarity=0.115  Sum_probs=93.7

Q ss_pred             HHHHHHHHHhc-CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059           19 FAKTALIKIYS-HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (258)
Q Consensus        19 ~~k~~li~~~~-~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (258)
                      -++.+.+.+.. .|+.+++|+|||||..+..|+.. +..+++++|-++++++..+++....+ ..++.++.+|+.+.-  
T Consensus        21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L--   97 (187)
T COG2242          21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEAL--   97 (187)
T ss_pred             HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccchHhh--
Confidence            34444455543 48999999999999999999855 44699999999999999999888776 348899999974321  


Q ss_pred             hhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHH
Q 025059           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (258)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~  154 (258)
                         + ...++|.|++..+ .       ....+++.+...|+|||.+++....-+.+..
T Consensus        98 ---~-~~~~~daiFIGGg-~-------~i~~ile~~~~~l~~ggrlV~naitlE~~~~  143 (187)
T COG2242          98 ---P-DLPSPDAIFIGGG-G-------NIEEILEAAWERLKPGGRLVANAITLETLAK  143 (187)
T ss_pred             ---c-CCCCCCEEEECCC-C-------CHHHHHHHHHHHcCcCCeEEEEeecHHHHHH
Confidence               1 1237999988775 2       3788999999999999999998666554443

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.24  E-value=5.4e-11  Score=98.46  Aligned_cols=110  Identities=25%  Similarity=0.195  Sum_probs=83.6

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHh--c---------CCCceeEEEEcCCCCCchh
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN--Q---------RKNFIAEFFEADPCAENFE   96 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~---------~~~~~~~~~~~d~~~~~~~   96 (258)
                      ..+++.+||..|||.|.++..++..+. +|+|+|+|+.+++.+.+....  .         ....++++.++|+...+..
T Consensus        34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~  112 (218)
T PF05724_consen   34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE  112 (218)
T ss_dssp             TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred             CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence            456778999999999999999999988 999999999999998554321  0         0122578999999774431


Q ss_pred             hhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                           ..++||+|.-..+++.  .+.+......+.+.++|+|||.+++.
T Consensus       113 -----~~g~fD~iyDr~~l~A--lpp~~R~~Ya~~l~~ll~p~g~~lLi  154 (218)
T PF05724_consen  113 -----DVGKFDLIYDRTFLCA--LPPEMRERYAQQLASLLKPGGRGLLI  154 (218)
T ss_dssp             -----CHHSEEEEEECSSTTT--S-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred             -----hcCCceEEEEeccccc--CCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence                 2358999988877764  35778899999999999999995444

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.21  E-value=4.4e-10  Score=90.95  Aligned_cols=119  Identities=18%  Similarity=0.189  Sum_probs=81.4

Q ss_pred             HHHhcCCCC-EEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh--hh
Q 025059           25 IKIYSHPYV-TVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ--MQ  100 (258)
Q Consensus        25 i~~~~~~~~-~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~  100 (258)
                      ++.++++.. +|||||||||..+..++..-+ -...-.|+++..+..-+......+..--..-+..|+...+-...  .+
T Consensus        18 L~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~   97 (204)
T PF06080_consen   18 LKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAP   97 (204)
T ss_pred             HHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccc
Confidence            344555555 599999999999999988733 35667788887765555544433211011224556654421000  00


Q ss_pred             hcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ...++||.|+|...+|.  .+.+....+++.+.++|++||.|++-
T Consensus        98 ~~~~~~D~i~~~N~lHI--~p~~~~~~lf~~a~~~L~~gG~L~~Y  140 (204)
T PF06080_consen   98 LSPESFDAIFCINMLHI--SPWSAVEGLFAGAARLLKPGGLLFLY  140 (204)
T ss_pred             cCCCCcceeeehhHHHh--cCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence            13569999999999997  67888999999999999999999886

The function of this family is unknown.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.21  E-value=3.9e-10  Score=102.70  Aligned_cols=112  Identities=17%  Similarity=0.142  Sum_probs=83.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|..+..++.... ..++++|+++.+++.++++++..+.  .+.++++|+.+...  ..  ..++||.
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~--~~--~~~~fD~  316 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQ--WW--DGQPFDR  316 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchh--hc--ccCCCCE
Confidence            3789999999999999988877643 5999999999999999999987654  46889999865321  01  2468999


Q ss_pred             EEeccccc------------cccCCHH-------HHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQ------------MCFETEE-------RARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~------------~~~~~~~-------~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++.....            + ..+.+       ....++.++.++|+|||.++.+++.
T Consensus       317 Vl~D~Pcs~~G~~~~~p~~~~-~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs  374 (427)
T PRK10901        317 ILLDAPCSATGVIRRHPDIKW-LRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS  374 (427)
T ss_pred             EEECCCCCcccccccCccccc-cCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            98533111            1 01122       2357899999999999999988653

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.20  E-value=1.7e-10  Score=98.55  Aligned_cols=113  Identities=14%  Similarity=0.024  Sum_probs=82.7

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++.+|||+|||+|+.+..++..  ..+.++++|+++.+++.++++++..+.. ++.+.+.|+...+.      ..+.||
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~------~~~~fD  142 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGA------AVPKFD  142 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhh------hccCCC
Confidence            47889999999999999887665  2358999999999999999999876543 57888888754322      245699


Q ss_pred             EEEecccccc---c--------cCCHH-------HHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          108 LVCCFQHLQM---C--------FETEE-------RARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       108 ~V~~~~~l~~---~--------~~~~~-------~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .|++......   .        ..+.+       ....++.++.++|||||+++.++..-
T Consensus       143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            9986321100   0        01111       23569999999999999999886543

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.19  E-value=3e-10  Score=95.20  Aligned_cols=106  Identities=11%  Similarity=0.072  Sum_probs=82.9

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCCce
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~f  106 (258)
                      ++.+|||+|||+|..+..++..  +.++++++|+++++++.|+++++..+...+++++.+|+.+. + +.+..  +.++|
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-L-~~l~~~~~~~~f  145 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-L-DQLLNNDPKPEF  145 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-H-HHHHhCCCCCCC
Confidence            5689999999999877777654  34699999999999999999998887666799999998542 1 11111  24689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|++-.       ..+....++..+.++|+|||.+++.
T Consensus       146 D~VfiDa-------~k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        146 DFAFVDA-------DKPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             CEEEECC-------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            9997643       2455778899999999999999875

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.19  E-value=2.6e-10  Score=99.58  Aligned_cols=101  Identities=11%  Similarity=0.023  Sum_probs=77.0

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCC--CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      .+++.+|||+|||+|..+..+++...  +.++++|+++.+++.|++++...+.. ++.++++|+.....      ....|
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~------~~~~f  150 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVP------EFAPY  150 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhccc------ccCCc
Confidence            45788999999999999888877532  47999999999999999988766542 68889998754322      23579


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+|++..+...          ....+.+.|+|||.+++..
T Consensus       151 D~Ii~~~g~~~----------ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        151 DVIFVTVGVDE----------VPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             cEEEECCchHH----------hHHHHHHhcCCCCEEEEEe
Confidence            99998765432          2234677999999988753

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.19  E-value=3.7e-10  Score=102.75  Aligned_cols=114  Identities=16%  Similarity=0.082  Sum_probs=84.5

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++.+|||+|||+|+.+..++..  +.++++++|+++.+++.++++++..+.. ++.+.++|+...+-  .   ..++||
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~--~---~~~~fD  309 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTE--Y---VQDTFD  309 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhh--h---hhccCC
Confidence            37889999999999988888765  3469999999999999999999876543 57899999865321  0   246899


Q ss_pred             EEEecccc---cccc--------CCH-------HHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          108 LVCCFQHL---QMCF--------ETE-------ERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       108 ~V~~~~~l---~~~~--------~~~-------~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .|++-...   ...-        .+.       ....+++.++.+.|+|||.++.++++-
T Consensus       310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            99863211   1100        011       123678999999999999999886654

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.18  E-value=2.7e-10  Score=90.84  Aligned_cols=104  Identities=13%  Similarity=0.047  Sum_probs=77.0

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|.++..++... .+++++|+++.+++.+++++....   +++++++|+.+.++      ++.+||.
T Consensus        11 ~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~---~v~ii~~D~~~~~~------~~~~~d~   80 (169)
T smart00650       11 LRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAAD---NLTVIHGDALKFDL------PKLQPYK   80 (169)
T ss_pred             CCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCC---CEEEEECchhcCCc------cccCCCE
Confidence            3467899999999999999998874 589999999999999998886422   78999999977654      3457999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |+++...+.   +.+.+..++++.  .+.++|.+++..-
T Consensus        81 vi~n~Py~~---~~~~i~~~l~~~--~~~~~~~l~~q~e  114 (169)
T smart00650       81 VVGNLPYNI---STPILFKLLEEP--PAFRDAVLMVQKE  114 (169)
T ss_pred             EEECCCccc---HHHHHHHHHhcC--CCcceEEEEEEHH
Confidence            988754442   233444444432  2458888888743

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.18  E-value=3.8e-10  Score=103.29  Aligned_cols=110  Identities=25%  Similarity=0.204  Sum_probs=82.8

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ++.+|||+|||+|+.+..++..  +.++++++|+|+.+++.++++++..+.. ++.++++|+....       +.++||+
T Consensus       250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-------~~~~fD~  321 (445)
T PRK14904        250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-------PEEQPDA  321 (445)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-------cCCCCCE
Confidence            7789999999999988777654  3358999999999999999999876543 6889999986532       3468999


Q ss_pred             EEecc----c--c------ccccCCHH-------HHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          109 VCCFQ----H--L------QMCFETEE-------RARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~----~--l------~~~~~~~~-------~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |++-.    .  +      .+. .+.+       ....++.++.++|+|||+++..+++-
T Consensus       322 Vl~D~Pcsg~g~~~r~p~~~~~-~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        322 ILLDAPCTGTGVLGRRAELRWK-LTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             EEEcCCCCCcchhhcCcchhhc-CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            98521    0  0      010 1122       23468999999999999999987654

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.18  E-value=2.1e-10  Score=106.34  Aligned_cols=110  Identities=15%  Similarity=0.143  Sum_probs=82.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+...++.++++|+.+. +      +.++||+|
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~------~~~~fDlI  210 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-I------EKQKFDFI  210 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-C------cCCCccEE
Confidence            3468999999999998888765 44699999999999999999987665444688999997431 1      34689999


Q ss_pred             Eeccccc--------------c-----cc---CCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          110 CCFQHLQ--------------M-----CF---ETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       110 ~~~~~l~--------------~-----~~---~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      +++-...              +     .+   .+.+..+.++.++.++|+|||.+++.+-
T Consensus       211 vsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig  270 (506)
T PRK01544        211 VSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG  270 (506)
T ss_pred             EECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence            9853110              0     00   1223457788999999999999988743

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.17  E-value=1.5e-09  Score=90.47  Aligned_cols=152  Identities=18%  Similarity=0.119  Sum_probs=103.2

Q ss_pred             CccCCCCCcchHHhHHHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCC
Q 025059            2 SVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKN   80 (258)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~   80 (258)
                      +||+ +|=+|-..  -.||-..+-+.-...+..+||+|||+|..+..++.. +...++++|.|+.++..|.++....+..
T Consensus       122 gVlI-PRpETEE~--V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~  198 (328)
T KOG2904|consen  122 GVLI-PRPETEEW--VEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS  198 (328)
T ss_pred             Ceee-cCccHHHH--HHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc
Confidence            3555 66665542  244443333333335678999999999999888776 5668999999999999999998877665


Q ss_pred             ceeEEEEcCCCCCchhhhhhhcCCceeEEEeccc----------------------cccccCCHHHHHHHHHHHHhcccC
Q 025059           81 FIAEFFEADPCAENFETQMQEKANQADLVCCFQH----------------------LQMCFETEERARRLLQNVSSLLKP  138 (258)
Q Consensus        81 ~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~----------------------l~~~~~~~~~~~~~l~~i~~~Lkp  138 (258)
                      .++..++-++....+.+. +...++.|+++++-.                      +..-.+....+..++.-+.|+|+|
T Consensus       199 g~i~v~~~~me~d~~~~~-~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~  277 (328)
T KOG2904|consen  199 GRIEVIHNIMESDASDEH-PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQP  277 (328)
T ss_pred             CceEEEeccccccccccc-ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhccc
Confidence            577777666654443322 114689999988631                      111123335667788889999999


Q ss_pred             CcEEEEEEc---CchHHHHHHH
Q 025059          139 GGYFLGITP---DSSTIWAKYQ  157 (258)
Q Consensus       139 gG~~i~~~~---~~~~~~~~~~  157 (258)
                      ||.+.+...   .+..+.+...
T Consensus       278 gg~~~le~~~~~~~~~lv~~~m  299 (328)
T KOG2904|consen  278 GGFEQLELVERKEHSYLVRIWM  299 (328)
T ss_pred             CCeEEEEecccccCcHHHHHHH
Confidence            999998854   4455555444

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.17  E-value=1.5e-10  Score=94.23  Aligned_cols=106  Identities=15%  Similarity=0.125  Sum_probs=78.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ...+.||+|+|-|+.+..++..-+.+|..+|+.+..++.|++.+..... .-..+.+..+.+-..      ...+||+|.
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~-~v~~~~~~gLQ~f~P------~~~~YDlIW  127 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP-RVGEFYCVGLQDFTP------EEGKYDLIW  127 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC-CEEEEEES-GGG----------TT-EEEEE
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC-CcceEEecCHhhccC------CCCcEeEEE
Confidence            3578999999999999888777778999999999999999987655211 135677776543211      357999999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ++.++.|  .+.+++..+|+.+...|+|+|++++-
T Consensus       128 ~QW~lgh--LTD~dlv~fL~RCk~~L~~~G~IvvK  160 (218)
T PF05891_consen  128 IQWCLGH--LTDEDLVAFLKRCKQALKPNGVIVVK  160 (218)
T ss_dssp             EES-GGG--S-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ehHhhcc--CCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence            9999988  68899999999999999999988774

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.16  E-value=7.6e-10  Score=93.75  Aligned_cols=110  Identities=20%  Similarity=0.256  Sum_probs=79.7

Q ss_pred             CCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      +.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++...++    ..++++|+.+.. ...   ..++||+|+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l-~~~---~~~~fDlVv  158 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDAL-PTA---LRGRVDILA  158 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhc-chh---cCCCEeEEE
Confidence            468999999999999888765 33489999999999999999987653    478889875421 100   135799999


Q ss_pred             eccccc------c------------c----cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          111 CFQHLQ------M------------C----FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       111 ~~~~l~------~------------~----~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ++--..      .            .    -...+-.+.++..+.++|+|||.+++.+...
T Consensus       159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~  219 (251)
T TIGR03704       159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER  219 (251)
T ss_pred             ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence            864211      0            0    0112235688899999999999999886543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.15  E-value=7.6e-10  Score=101.02  Aligned_cols=116  Identities=17%  Similarity=0.143  Sum_probs=84.2

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++.+|||+|||+|+.+..++..  +.++++++|+++.+++.+++++...+.. ++.++++|+...+-  ......++||
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~--~~~~~~~~fD  327 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLE--LKPQWRGYFD  327 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhccc--ccccccccCC
Confidence            37899999999999999888775  3458999999999999999999877654 58999999865431  0000246899


Q ss_pred             EEEecc------cccccc-----CCHHH-------HHHHHHHHHhcccCCcEEEEEEcC
Q 025059          108 LVCCFQ------HLQMCF-----ETEER-------ARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       108 ~V~~~~------~l~~~~-----~~~~~-------~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      .|++..      +++..-     .+.++       ...++.++.++|||||.++.++..
T Consensus       328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs  386 (434)
T PRK14901        328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT  386 (434)
T ss_pred             EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            998632      111100     01111       468899999999999999877544

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.15  E-value=4.6e-10  Score=107.98  Aligned_cols=119  Identities=16%  Similarity=0.163  Sum_probs=89.9

Q ss_pred             HHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCC-ceeEEEEcCCCCCchhhhhhhcC
Q 025059           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKA  103 (258)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~  103 (258)
                      +..+. ++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..++.. .++.++++|+.+  +   +....
T Consensus       533 ~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~--~---l~~~~  606 (702)
T PRK11783        533 IGQMA-KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLA--W---LKEAR  606 (702)
T ss_pred             HHHhc-CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHH--H---HHHcC
Confidence            33444 47899999999999999998877768999999999999999999877654 368999999743  1   11124


Q ss_pred             CceeEEEeccccc-------cccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          104 NQADLVCCFQHLQ-------MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       104 ~~fD~V~~~~~l~-------~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ++||+|++.-.-.       ..+........++..+.++|+|||.+++.+...
T Consensus       607 ~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~  659 (702)
T PRK11783        607 EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR  659 (702)
T ss_pred             CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            6899998853210       122334567788999999999999998875443

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.14  E-value=3.3e-10  Score=93.06  Aligned_cols=102  Identities=14%  Similarity=0.126  Sum_probs=75.0

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ++|+.+|||||||+|..+.-++..  ..+.|+++|+.+..++.|++++...+.. ++.+.++|......      ....|
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~------~~apf  142 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWP------EEAPF  142 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTG------GG-SE
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccc------cCCCc
Confidence            679999999999999888777765  3347999999999999999999876543 78999999743221      35689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |.|++..+...          .-..+.+.|++||++++-.-
T Consensus       143 D~I~v~~a~~~----------ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  143 DRIIVTAAVPE----------IPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             EEEEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred             CEEEEeeccch----------HHHHHHHhcCCCcEEEEEEc
Confidence            99999876543          22346678999999998644

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.13  E-value=1.2e-09  Score=99.57  Aligned_cols=115  Identities=15%  Similarity=0.092  Sum_probs=82.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|||+|||+|+.+..++.. +.++++++|+++.+++.++++++..+....+.+..+|.......    ...++||.|
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~----~~~~~fD~V  313 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW----AENEQFDRI  313 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc----ccccccCEE
Confidence            7899999999999999888775 34699999999999999999998765432344466665432210    024689999


Q ss_pred             Eecc------cccccc-----CCHH-------HHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQ------HLQMCF-----ETEE-------RARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~------~l~~~~-----~~~~-------~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ++-.      .++..-     .+.+       ....++.++.++|||||.++.++++-
T Consensus       314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            8531      222100     0111       24789999999999999999886643

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.13  E-value=2.7e-09  Score=89.89  Aligned_cols=143  Identities=19%  Similarity=0.162  Sum_probs=91.8

Q ss_pred             cCCCCCcchHHhHHHHHHHHHHHHhcC---CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC--
Q 025059            4 LPIPRSELTHHRLYEFAKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR--   78 (258)
Q Consensus         4 ~~~~~~~~~~~~~~~~~k~~li~~~~~---~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--   78 (258)
                      |...+.-.....+..|....+.+.+.+   ++.++||||||+-.....-+.....+++..|.++..+++.++-++..+  
T Consensus        26 Y~~~~~~~~~~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~  105 (256)
T PF01234_consen   26 YSFPSGDDAEDEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAF  105 (256)
T ss_dssp             HSTSSS-CHHHHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS-
T ss_pred             cCCCccCcccchhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCC
Confidence            343444444445667777677666664   567999999998543222222345689999999999987766443210  


Q ss_pred             --------------C---------Cc--ee-EEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHH
Q 025059           79 --------------K---------NF--IA-EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNV  132 (258)
Q Consensus        79 --------------~---------~~--~~-~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i  132 (258)
                                    .         ..  .+ .++.+|+.+.+........+.+||+|++.+++..+..+.+....+++++
T Consensus       106 DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni  185 (256)
T PF01234_consen  106 DWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNI  185 (256)
T ss_dssp             -THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHH
T ss_pred             CccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHH
Confidence                          0         00  12 5677888765432110001246999999999999999999999999999


Q ss_pred             HhcccCCcEEEEEE
Q 025059          133 SSLLKPGGYFLGIT  146 (258)
Q Consensus       133 ~~~LkpgG~~i~~~  146 (258)
                      .++|||||.|++..
T Consensus       186 ~~lLkpGG~Lil~~  199 (256)
T PF01234_consen  186 SSLLKPGGHLILAG  199 (256)
T ss_dssp             HTTEEEEEEEEEEE
T ss_pred             HHHcCCCcEEEEEE
Confidence            99999999999873

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PHA03411 putative methyltransferase; Provisional

Probab=99.11  E-value=5.5e-10  Score=94.46  Aligned_cols=102  Identities=14%  Similarity=0.025  Sum_probs=75.9

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|||+|||+|..+..++... ..+++|+|+++.|++.|+++..      ++.++++|+.+..       ...+||+|
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------~v~~v~~D~~e~~-------~~~kFDlI  130 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------EAEWITSDVFEFE-------SNEKFDVV  130 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------CCEEEECchhhhc-------ccCCCcEE
Confidence            45789999999998887776653 4599999999999999988642      5788999986532       24689999


Q ss_pred             EeccccccccCC-HHH---------------HHHHHHHHHhcccCCcEEEEE
Q 025059          110 CCFQHLQMCFET-EER---------------ARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       110 ~~~~~l~~~~~~-~~~---------------~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +++-..+..-.. ...               +..++.....+|+|+|.+++.
T Consensus       131 IsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        131 ISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             EEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            997655531110 011               356778889999999977666

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=1.6e-09  Score=93.11  Aligned_cols=115  Identities=20%  Similarity=0.209  Sum_probs=85.0

Q ss_pred             EEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEec
Q 025059           34 TVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (258)
Q Consensus        34 ~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~  112 (258)
                      +|||||||+|..+..++.... ..|+|+|+|+.+++.|+++...++. .++.+++.|....-        .++||+|+++
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~--------~~~fDlIVsN  183 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPL--------RGKFDLIVSN  183 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccccc--------CCceeEEEeC
Confidence            799999999999999988754 5999999999999999999988865 35667777764422        3489999986


Q ss_pred             ccc---------------------ccccCCHHHHHHHHHHHHhcccCCcEEEEEEc-Cc-hHHHHHHH
Q 025059          113 QHL---------------------QMCFETEERARRLLQNVSSLLKPGGYFLGITP-DS-STIWAKYQ  157 (258)
Q Consensus       113 ~~l---------------------~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~-~~-~~~~~~~~  157 (258)
                      ---                     -.-..+.+-.+.++.++.+.|+|||.+++..- +. ..+.+.+.
T Consensus       184 PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~  251 (280)
T COG2890         184 PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFE  251 (280)
T ss_pred             CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHH
Confidence            311                     00012235678999999999999999988854 33 34444443

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.10  E-value=2e-09  Score=98.53  Aligned_cols=113  Identities=16%  Similarity=0.077  Sum_probs=83.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++.+|||+|||+|..+..++..  +.++++++|+++.+++.++++++..+.. ++.++++|+.....  .   ..++||
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~--~---~~~~fD  322 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHE--K---FAEKFD  322 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccc--h---hcccCC
Confidence            46789999999999999888775  3469999999999999999999877653 58999999865321  1   126899


Q ss_pred             EEEecccccc--c---------cCCHHH-------HHHHHHHHHhcccCCcEEEEEEcC
Q 025059          108 LVCCFQHLQM--C---------FETEER-------ARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       108 ~V~~~~~l~~--~---------~~~~~~-------~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +|++......  .         ..+..+       ...++.++.++|+|||.++.+++.
T Consensus       323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs  381 (444)
T PRK14902        323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT  381 (444)
T ss_pred             EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence            9987532110  0         011122       256899999999999999977554

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.08  E-value=2.2e-09  Score=87.26  Aligned_cols=107  Identities=19%  Similarity=0.268  Sum_probs=69.9

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-------CC---CeEEEEecChhHHHHHHHHH--------------H-----hcC---
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-------LI---ANYIGIDVATSGIGEARDTW--------------E-----NQR---   78 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-------~~---~~v~gvD~s~~~l~~a~~~~--------------~-----~~~---   78 (258)
                      +..+|+..||++|.-.--++..       ..   -+++|+|+|+.+|+.|++-.              .     ..+   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            5689999999999654333221       11   28999999999999998721              0     000   


Q ss_pred             -----CCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           79 -----KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        79 -----~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                           ....+.|.+.|+.+...      ..+.||+|+|-.++.|  -+.+....+++.+++.|+|||+|++-
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~------~~~~fD~I~CRNVlIY--F~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDP------PFGRFDLIFCRNVLIY--FDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGG--S-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCc------ccCCccEEEecCEEEE--eCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                 01247899999876222      4689999999999998  45788899999999999999999875

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.08  E-value=1.7e-09  Score=96.30  Aligned_cols=130  Identities=14%  Similarity=0.102  Sum_probs=99.6

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCC-ceeEEEEcCCCCCchhhhhhhc
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      .+..... |.+|||+-|=||+++...+..+..++++||.|..+++.|+++++-++.. .++.|+++|+.+  +.+.....
T Consensus       211 ~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~--~l~~~~~~  287 (393)
T COG1092         211 ALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK--WLRKAERR  287 (393)
T ss_pred             HHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH--HHHHHHhc
Confidence            3445556 8999999999999999999989889999999999999999999888652 357999999854  33333335


Q ss_pred             CCceeEEEeccc-----cccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHH
Q 025059          103 ANQADLVCCFQH-----LQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (258)
Q Consensus       103 ~~~fD~V~~~~~-----l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~  156 (258)
                      ..+||+|++--.     -...+....+...++..+.++|+|||.+++.+.....-...+
T Consensus       288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f  346 (393)
T COG1092         288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLF  346 (393)
T ss_pred             CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHH
Confidence            669999987321     111234456788999999999999999999977764333333

>TIGR00417 speE spermidine synthase

Probab=99.07  E-value=3.6e-09  Score=90.67  Aligned_cols=111  Identities=12%  Similarity=0.107  Sum_probs=80.2

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcC---CCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      .+.+||+||||+|..+..++... ..+++++|+++++++.|++.+....   ...+++++.+|...  +   +....++|
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~--~---l~~~~~~y  146 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK--F---LADTENTF  146 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH--H---HHhCCCCc
Confidence            45699999999999888887764 5689999999999999998775421   12257777777532  1   11135789


Q ss_pred             eEEEeccccccccCCHHH--HHHHHHHHHhcccCCcEEEEEEcC
Q 025059          107 DLVCCFQHLQMCFETEER--ARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~--~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |+|++......  .....  ...+++.+.++|+|||++++...+
T Consensus       147 DvIi~D~~~~~--~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~  188 (270)
T TIGR00417       147 DVIIVDSTDPV--GPAETLFTKEFYELLKKALNEDGIFVAQSES  188 (270)
T ss_pred             cEEEEeCCCCC--CcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            99988653221  11122  468889999999999999987443

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK01581 speE spermidine synthase; Validated

Probab=99.07  E-value=5.3e-09  Score=91.82  Aligned_cols=113  Identities=14%  Similarity=0.080  Sum_probs=79.8

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHH--HH---hcC-CCceeEEEEcCCCCCchhhhhhhc
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDT--WE---NQR-KNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~--~~---~~~-~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      +...+||+||||+|..+..+++.+ ..+++++|+++++++.|++.  +.   ... .+.+++++.+|+..  +   +...
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~--f---L~~~  223 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE--F---LSSP  223 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH--H---HHhc
Confidence            355799999999999888888764 46999999999999999962  11   111 13378999999743  1   2224


Q ss_pred             CCceeEEEeccccccc-cCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          103 ANQADLVCCFQHLQMC-FETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~-~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      .++||+|++-..-... ....-....+++.+.+.|+|||+++....
T Consensus       224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            5789999987421110 00112236789999999999999988743

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=2.2e-09  Score=87.02  Aligned_cols=107  Identities=14%  Similarity=0.110  Sum_probs=81.7

Q ss_pred             HHHHHh-cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh
Q 025059           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (258)
Q Consensus        23 ~li~~~-~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (258)
                      .+++.. ..|+.+|||||||+|-.+.-+++... +|+.+|..+...+.|+++++..+.. ++.+.++|...-.-      
T Consensus        63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~------  134 (209)
T COG2518          63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWP------  134 (209)
T ss_pred             HHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCC------
Confidence            334433 45899999999999987777766544 9999999999999999999987654 59999999755332      


Q ss_pred             cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      +...||.|++..+...          .=+.+.+.|++||++++-.-
T Consensus       135 ~~aPyD~I~Vtaaa~~----------vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         135 EEAPYDRIIVTAAAPE----------VPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCCcCEEEEeeccCC----------CCHHHHHhcccCCEEEEEEc
Confidence            3589999988775432          22345678999999988643

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=2.2e-09  Score=88.98  Aligned_cols=113  Identities=17%  Similarity=0.107  Sum_probs=94.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      +.|+++|||.|.|+|.++..++..  +.++|+.+|+-++.++.|+++++..+.+.++.+...|+.+...       ...|
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-------~~~v  164 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-------EEDV  164 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-------cccc
Confidence            459999999999999999999864  5579999999999999999999987666568999999876544       3489


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHH
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~  157 (258)
                      |.|+.         +.++.-.+++++.++|+|||.+++-.|..+.+.+.+.
T Consensus       165 Dav~L---------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~  206 (256)
T COG2519         165 DAVFL---------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE  206 (256)
T ss_pred             CEEEE---------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Confidence            99954         2455778999999999999999999999877665544

>PLN02366 spermidine synthase

Probab=99.07  E-value=2e-09  Score=93.49  Aligned_cols=114  Identities=11%  Similarity=0.059  Sum_probs=82.5

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcC---CCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      .+++.+||+||||.|..+..+++.+ ..+++.+|+++.+++.|++.+....   ...+++++.+|+..  +....  +.+
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~--~l~~~--~~~  164 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE--FLKNA--PEG  164 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH--HHhhc--cCC
Confidence            3467899999999999999998874 4689999999999999999876421   12378999999733  11111  256


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +||+|++-..-.......--...+++.+.++|+|||+++...
T Consensus       165 ~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        165 TYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             CCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            899998854332211111124678999999999999998753

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.05  E-value=8.7e-09  Score=84.10  Aligned_cols=107  Identities=7%  Similarity=-0.002  Sum_probs=77.7

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|.++..++..+..+++++|+++.+++.++++++..+.. ++.++++|+.+.     +.....+||+|+
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~-----l~~~~~~fDlV~  126 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSF-----LAQPGTPHNVVF  126 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHH-----HhhcCCCceEEE
Confidence            57899999999999888665666679999999999999999988776543 688999997431     111245799998


Q ss_pred             eccccccccCCHHHHHHHHHHHHh--cccCCcEEEEEEcC
Q 025059          111 CFQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPD  148 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~--~LkpgG~~i~~~~~  148 (258)
                      +.-..+.     .-...++..+..  .|+|+|++++..+.
T Consensus       127 ~DPPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        127 VDPPFRK-----GLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             ECCCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            8754221     123344454444  48999999988554

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.04  E-value=1.4e-09  Score=93.78  Aligned_cols=107  Identities=15%  Similarity=0.113  Sum_probs=87.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      +-++..|||+|||||.++...++.|..+|+++|.|.-+ +.|.+....++....++++++.+.+..+      |.++.|+
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L------P~eKVDi  130 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL------PVEKVDI  130 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec------CccceeE
Confidence            34789999999999999888888898899999987655 8899999888777678999999877655      5689999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      |++-+.-.+ +..+..++..+-.--+-|+|||.++
T Consensus       131 IvSEWMGy~-Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  131 IVSEWMGYF-LLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             EeehhhhHH-HHHhhhhhhhhhhhhhccCCCceEc
Confidence            998775443 3335667778888889999999875

>PHA03412 putative methyltransferase; Provisional

Probab=99.02  E-value=1.6e-09  Score=89.66  Aligned_cols=98  Identities=13%  Similarity=0.153  Sum_probs=71.9

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc----CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      .+.+|||+|||+|.++..+++.    +..+++++|+++.+++.|+++..      ++.++++|+....+       +++|
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~-------~~~F  115 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEF-------DTLF  115 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccc-------cCCc
Confidence            3679999999999999888764    23489999999999999997753      47889999865332       4689


Q ss_pred             eEEEeccccccc--------cCCHHHHHHHHHHHHhcccCCcE
Q 025059          107 DLVCCFQHLQMC--------FETEERARRLLQNVSSLLKPGGY  141 (258)
Q Consensus       107 D~V~~~~~l~~~--------~~~~~~~~~~l~~i~~~LkpgG~  141 (258)
                      |+|+++--.+-.        ..+..-...++..+.+++++|+.
T Consensus       116 DlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        116 DMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             cEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            999997543311        01123356688888887777764

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=1.4e-09  Score=86.22  Aligned_cols=73  Identities=22%  Similarity=0.090  Sum_probs=62.9

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      .+.+|+|+|||||.++...+..+...|+|+|+++++++.++++....  ..++.|+++|+.+         ....+|.|+
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~---------~~~~~dtvi  113 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSD---------FRGKFDTVI  113 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhh---------cCCccceEE
Confidence            57889999999999999998889889999999999999999998773  4489999999865         256889888


Q ss_pred             eccc
Q 025059          111 CFQH  114 (258)
Q Consensus       111 ~~~~  114 (258)
                      ++-.
T Consensus       114 mNPP  117 (198)
T COG2263         114 MNPP  117 (198)
T ss_pred             ECCC
Confidence            8643

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.99  E-value=8.1e-09  Score=86.73  Aligned_cols=122  Identities=17%  Similarity=0.217  Sum_probs=90.8

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (258)
                      +...-+.||.+|||.|.|+|.++..+++.  +.++|+..|+.++.++.|++.++..++...+.+.+.|+....+...   
T Consensus        33 ~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~---  109 (247)
T PF08704_consen   33 LMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE---  109 (247)
T ss_dssp             HHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT---
T ss_pred             HHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc---
Confidence            33344669999999999999999999875  5579999999999999999999998876689999999976555211   


Q ss_pred             cCCceeEEEeccccccccCCHHHHHHHHHHHHhcc-cCCcEEEEEEcCchHHHHHHH
Q 025059          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLL-KPGGYFLGITPDSSTIWAKYQ  157 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~L-kpgG~~i~~~~~~~~~~~~~~  157 (258)
                      .+..+|.|+.-         .++.-.++..+.++| ++||.+.+-.|.-+.+.+...
T Consensus       110 ~~~~~DavfLD---------lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~  157 (247)
T PF08704_consen  110 LESDFDAVFLD---------LPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVE  157 (247)
T ss_dssp             -TTSEEEEEEE---------SSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHH
T ss_pred             ccCcccEEEEe---------CCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHH
Confidence            24689999543         233456888899999 899999999999876655544

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.98  E-value=3.7e-09  Score=89.02  Aligned_cols=96  Identities=26%  Similarity=0.290  Sum_probs=79.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      +..+|+|||+|.|..+..+++. +.-+++..|. |..++.+++   ..    ++.++.+|+. .++      +.  +|+|
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~~----rv~~~~gd~f-~~~------P~--~D~~  162 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---AD----RVEFVPGDFF-DPL------PV--ADVY  162 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---TT----TEEEEES-TT-TCC------SS--ESEE
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---cc----ccccccccHH-hhh------cc--ccce
Confidence            5678999999999999999887 4458999998 888888877   22    8999999997 444      33  9999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCC--cEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPG--GYFLGI  145 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg--G~~i~~  145 (258)
                      ++...+|.  .+.++...+|+++++.|+||  |.+++.
T Consensus       163 ~l~~vLh~--~~d~~~~~iL~~~~~al~pg~~g~llI~  198 (241)
T PF00891_consen  163 LLRHVLHD--WSDEDCVKILRNAAAALKPGKDGRLLII  198 (241)
T ss_dssp             EEESSGGG--S-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred             eeehhhhh--cchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence            99999997  57889999999999999999  999887

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.98  E-value=6.8e-09  Score=84.59  Aligned_cols=115  Identities=17%  Similarity=0.182  Sum_probs=81.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ....+||||||.|.++..++.. +...++|+|++...+..|.++....++. ++.++++|+..  +...+. ++++.|.|
T Consensus        17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~--~l~~~~-~~~~v~~i   92 (195)
T PF02390_consen   17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARE--LLRRLF-PPGSVDRI   92 (195)
T ss_dssp             CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTT--HHHHHS-TTTSEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHH--HHhhcc-cCCchheE
Confidence            3348999999999999999887 4569999999999999999888776554 89999999855  222221 46899999


Q ss_pred             Eecccccccc----CCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCF----ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~----~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .++|.=.+--    ...--...++..++++|+|||.+.+.+=+.
T Consensus        93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~  136 (195)
T PF02390_consen   93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE  136 (195)
T ss_dssp             EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred             EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence            8887432200    000013689999999999999998775444

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.97  E-value=9.8e-09  Score=94.00  Aligned_cols=105  Identities=19%  Similarity=0.190  Sum_probs=76.3

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||+|||+|.++..++... .+++|+|+|+.|++.|+++....+.. ++.++++|+.+..  ...+..+++||+|
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l--~~~~~~~~~fD~V  371 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDF--TDQPWALGGFDKV  371 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhh--hhhhhhcCCCCEE
Confidence            467899999999999999887765 59999999999999999988766543 6899999985421  1100124679999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ++.-.-.       .....++.+.+ ++|++++++++
T Consensus       372 i~dPPr~-------g~~~~~~~l~~-~~~~~ivyvSC  400 (443)
T PRK13168        372 LLDPPRA-------GAAEVMQALAK-LGPKRIVYVSC  400 (443)
T ss_pred             EECcCCc-------ChHHHHHHHHh-cCCCeEEEEEe
Confidence            8754211       13344555555 68999888875

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.96  E-value=7.2e-09  Score=82.93  Aligned_cols=113  Identities=19%  Similarity=0.048  Sum_probs=74.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcC--CCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      .++.+|||||||+|-....++.. +..+|+.+|.++ .++..+.+...+.  ...++.+...|..+.......  ...+|
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~~  120 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHSF  120 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SSB
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--ccccC
Confidence            36789999999999877777777 567999999998 8888888887654  334678888887553211122  35689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |+|++.-++..    .+....++..+.++|+|+|.+++..+..
T Consensus       121 D~IlasDv~Y~----~~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  121 DVILASDVLYD----EELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             SEEEEES--S-----GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             CEEEEecccch----HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            99999987765    5668889999999999999988775543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.94  E-value=2e-09  Score=87.52  Aligned_cols=111  Identities=21%  Similarity=0.300  Sum_probs=92.8

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      ...++|||||-|.....+...+..+++-+|.|-.|++.++..-.   .+..+....+|-...++      +++++|+|++
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd---p~i~~~~~v~DEE~Ldf------~ens~DLiis  143 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD---PSIETSYFVGDEEFLDF------KENSVDLIIS  143 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC---CceEEEEEecchhcccc------cccchhhhhh
Confidence            45799999999999999988899999999999999998865421   22366777888666666      7899999999


Q ss_pred             ccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHH
Q 025059          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (258)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~  155 (258)
                      +.++||    ..++...+..++..|||+|.||.+...++.+++.
T Consensus       144 SlslHW----~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyEL  183 (325)
T KOG2940|consen  144 SLSLHW----TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYEL  183 (325)
T ss_pred             hhhhhh----hccCchHHHHHHHhcCCCccchhHHhccccHHHH
Confidence            999999    5668889999999999999999998888766543

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.94  E-value=2.3e-08  Score=81.08  Aligned_cols=113  Identities=8%  Similarity=-0.006  Sum_probs=78.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||++||+|.+...++..+...++++|.++.+++.++++++..+...++.++++|+... + ..+......||+|+
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~-l-~~~~~~~~~~dvv~  126 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA-L-KFLAKKPTFDNVIY  126 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH-H-HHhhccCCCceEEE
Confidence            578999999999999999999888799999999999999999888775544688999997331 1 11111122478886


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      .--....  ...+..-..+.+ ...|+++|++++..+.
T Consensus       127 ~DPPy~~--~~~~~~l~~l~~-~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       127 LDPPFFN--GALQALLELCEN-NWILEDTVLIVVEEDR  161 (189)
T ss_pred             ECcCCCC--CcHHHHHHHHHH-CCCCCCCeEEEEEecC
Confidence            6432211  112222223322 4579999998887554

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PLN02476 O-methyltransferase

Probab=98.94  E-value=1.5e-08  Score=86.51  Aligned_cols=106  Identities=8%  Similarity=-0.005  Sum_probs=84.2

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh--hcCCce
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~f  106 (258)
                      +..+|||||||+|..+..++..  ..++++.+|.+++.++.|++.++..+...+++++.+|+.+  ..+.+.  ...++|
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e--~L~~l~~~~~~~~F  195 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE--SLKSMIQNGEGSSY  195 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--HHHHHHhcccCCCC
Confidence            4689999999999988888764  2458999999999999999999988776689999999743  111111  114689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|++-.       ...+...+++.+.++|+|||.+++.
T Consensus       196 D~VFIDa-------~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        196 DFAFVDA-------DKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             CEEEECC-------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            9997654       2556889999999999999999877

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.94  E-value=1.3e-08  Score=87.16  Aligned_cols=120  Identities=19%  Similarity=0.232  Sum_probs=86.0

Q ss_pred             HHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCC-ceeEEEEcCCCCCchhhhhhhcCC
Q 025059           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      ..++ .+.+|||+-|=||+++...+..+..+++++|.|..+++.|++++.-++.. .++.|++.|+.+  +...+. ..+
T Consensus       119 ~~~~-~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~--~l~~~~-~~~  194 (286)
T PF10672_consen  119 RKYA-KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK--FLKRLK-KGG  194 (286)
T ss_dssp             HHHC-TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH--HHHHHH-HTT
T ss_pred             HHHc-CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH--HHHHHh-cCC
Confidence            3444 47899999999999999988888889999999999999999999877643 368999999844  222222 357


Q ss_pred             ceeEEEec---cccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          105 QADLVCCF---QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       105 ~fD~V~~~---~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      +||+|++-   |+-. .+.-..+...++..+.++|+|||.+++++.+..
T Consensus       195 ~fD~IIlDPPsF~k~-~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~  242 (286)
T PF10672_consen  195 RFDLIILDPPSFAKS-KFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH  242 (286)
T ss_dssp             -EEEEEE--SSEESS-TCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred             CCCEEEECCCCCCCC-HHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            99999883   2111 122245778899999999999999988766653

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK03612 spermidine synthase; Provisional

Probab=98.93  E-value=9e-09  Score=95.90  Aligned_cols=113  Identities=12%  Similarity=0.034  Sum_probs=80.8

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHH--HHhc---C-CCceeEEEEcCCCCCchhhhhhhc
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDT--WENQ---R-KNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~--~~~~---~-~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      +++.+|||||||+|..+..+.+.+. .+++++|+++++++.|+++  +...   . .+.+++++.+|..+  +   +...
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~--~---l~~~  370 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN--W---LRKL  370 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH--H---HHhC
Confidence            4568999999999999988887754 7999999999999999983  3221   1 12378899999743  1   1113


Q ss_pred             CCceeEEEeccccccccC-CHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          103 ANQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      .++||+|++...-..... ..-....+++.+.++|+|||.+++...
T Consensus       371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~  416 (521)
T PRK03612        371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST  416 (521)
T ss_pred             CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence            579999998753322000 001135688999999999999998743

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.93  E-value=1.2e-08  Score=83.71  Aligned_cols=106  Identities=16%  Similarity=0.154  Sum_probs=82.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCCce
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~f  106 (258)
                      ...+||||||++|..+..++..  ..++++.+|++++..+.|++.+...+...+++++.+|+.+  ..+.+..  +.++|
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~--~l~~l~~~~~~~~f  122 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE--VLPELANDGEEGQF  122 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH--HHHHHHHTTTTTSE
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh--hHHHHHhccCCCce
Confidence            4579999999999998888876  2469999999999999999999877666689999999743  2122211  13689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|.+-..       ..+....+..+.++|+|||++++.
T Consensus       123 D~VFiDa~-------K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  123 DFVFIDAD-------KRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             EEEEEEST-------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEccc-------ccchhhHHHHHhhhccCCeEEEEc
Confidence            99977653       344777888899999999999988

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.89  E-value=1.2e-08  Score=83.74  Aligned_cols=115  Identities=21%  Similarity=0.237  Sum_probs=77.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcC-CCcee----------EEE------Ec----
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR-KNFIA----------EFF------EA----   88 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~----------~~~------~~----   88 (258)
                      .+..+|||||-+|.++..+++. +...+.|+||++..|+.|++..+-.. ....+          .+.      .+    
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            4678999999999999998876 66689999999999999999764210 00000          000      00    


Q ss_pred             --CCCC-Cc-------hhh--hhhhcCCceeEEEeccccccc--cCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           89 --DPCA-EN-------FET--QMQEKANQADLVCCFQHLQMC--FETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        89 --d~~~-~~-------~~~--~~~~~~~~fD~V~~~~~l~~~--~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                        |..+ ..       ++.  .+......||+|.|.....++  -.+.+.+..+++.+.++|.|||+|++.
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence              0000 00       000  011145789999987654332  234678999999999999999999886

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.89  E-value=1.3e-07  Score=82.52  Aligned_cols=114  Identities=12%  Similarity=0.048  Sum_probs=78.4

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc-----CCCeEEEEecChhHHHHHHHHHH-hcCCCceeEEEEcCCCCCchhhhhhh
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWE-NQRKNFIAEFFEADPCAENFETQMQE  101 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~-----~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (258)
                      .++++..|+|+|||+|.-+..++..     ....|+++|+|..+|+.+.+++. ..-....+.-+++|..+.-  ..++.
T Consensus        73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l--~~l~~  150 (319)
T TIGR03439        73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL--AWLKR  150 (319)
T ss_pred             hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH--hhccc
Confidence            3456789999999999766555443     23479999999999999999988 3322234555788764321  00111


Q ss_pred             --cCCceeEEEecc-ccccccCCHHHHHHHHHHHHh-cccCCcEEEEE
Q 025059          102 --KANQADLVCCFQ-HLQMCFETEERARRLLQNVSS-LLKPGGYFLGI  145 (258)
Q Consensus       102 --~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~-~LkpgG~~i~~  145 (258)
                        ......+|+... ++.+  -..+....+|+++++ .|+|||.+++-
T Consensus       151 ~~~~~~~r~~~flGSsiGN--f~~~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       151 PENRSRPTTILWLGSSIGN--FSRPEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             ccccCCccEEEEeCccccC--CCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence              123456666554 5555  346778899999999 99999998876

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.88  E-value=8.2e-08  Score=81.19  Aligned_cols=112  Identities=20%  Similarity=0.210  Sum_probs=90.5

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC---CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      ...+||||+||.|..+.......   ...+...|.|+..++..++..+..++..-+.|.++|+++..-   +..-....+
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~---l~~l~p~P~  211 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS---LAALDPAPT  211 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH---hhccCCCCC
Confidence            45799999999999888776652   358999999999999999999998877567999999977432   211245678


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +++++. ++-.|.+.......+..+.+++.|||++|.|.
T Consensus       212 l~iVsG-L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  212 LAIVSG-LYELFPDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             EEEEec-chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence            888775 44467777778889999999999999999983

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.88  E-value=1.9e-08  Score=91.64  Aligned_cols=103  Identities=14%  Similarity=0.101  Sum_probs=76.5

Q ss_pred             CCEEEEEcCCCCccHHHHHHcC-----CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           32 YVTVCDLYCGAGVDVDKWETAL-----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      +..|||+|||+|.++...++.+     ..+|++++-++.++...+++...++++.+++++++|+.+..+       +.+.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekv  259 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKV  259 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-E
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCce
Confidence            5789999999999887766653     459999999999998888887777776689999999988765       5699


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      |+|++-.. .. |...+-..+.+....+.|||||++|
T Consensus       260 DIIVSElL-Gs-fg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  260 DIIVSELL-GS-FGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEEEE----BT-TBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             eEEEEecc-CC-ccccccCHHHHHHHHhhcCCCCEEe
Confidence            99988542 22 2233355667899999999999875

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.88  E-value=2.4e-08  Score=85.81  Aligned_cols=107  Identities=16%  Similarity=0.170  Sum_probs=78.4

Q ss_pred             CCEEEEEcCCCCccHHHHHHc-----C----CCeEEEEecChhHHHHHHHHH-H-----------------hc-----C-
Q 025059           32 YVTVCDLYCGAGVDVDKWETA-----L----IANYIGIDVATSGIGEARDTW-E-----------------NQ-----R-   78 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~-----~----~~~v~gvD~s~~~l~~a~~~~-~-----------------~~-----~-   78 (258)
                      ..+|+..||+||.-.--++..     +    .-+++|+|+|+.+|+.|++.. .                 ..     + 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            479999999999654333221     1    137999999999999998731 0                 00     0 


Q ss_pred             ------CCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           79 ------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        79 ------~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                            ....+.|.+.|+.+.++.     +.+.||+|+|..++.|  -+.+....++..+.+.|+|||++++-
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~-----~~~~fD~I~cRNvliy--F~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWA-----VPGPFDAIFCRNVMIY--FDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCc-----cCCCcceeeHhhHHhc--CCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                  112468888888664331     2578999999988887  35778999999999999999988765

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.87  E-value=1.3e-08  Score=89.08  Aligned_cols=102  Identities=19%  Similarity=0.185  Sum_probs=72.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.|+++.+..+. .+++|+++|+.+...     ...++||+|+
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~-----~~~~~~D~Vv  245 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFAT-----AQGEVPDLVL  245 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHH-----hcCCCCeEEE
Confidence            46899999999999999998866 5999999999999999999887765 268999999744211     1235799998


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +.-. +.  .   -...+++ ....+.|++++++++
T Consensus       246 ~dPP-r~--G---~~~~~~~-~l~~~~~~~ivyvsc  274 (315)
T PRK03522        246 VNPP-RR--G---IGKELCD-YLSQMAPRFILYSSC  274 (315)
T ss_pred             ECCC-CC--C---ccHHHHH-HHHHcCCCeEEEEEC
Confidence            7642 11  0   0112222 233367887777663

>PLN02672 methionine S-methyltransferase

Probab=98.87  E-value=2.1e-08  Score=99.17  Aligned_cols=113  Identities=17%  Similarity=0.068  Sum_probs=81.9

Q ss_pred             CCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCC---------------CceeEEEEcCCCCCch
Q 025059           32 YVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRK---------------NFIAEFFEADPCAENF   95 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~---------------~~~~~~~~~d~~~~~~   95 (258)
                      +.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++...+..               ..++.|+++|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            4689999999999999988763 46999999999999999998875421               1268999999854221


Q ss_pred             hhhhhhcCCceeEEEeccccc---------------------c------c-------cCCHHHHHHHHHHHHhcccCCcE
Q 025059           96 ETQMQEKANQADLVCCFQHLQ---------------------M------C-------FETEERARRLLQNVSSLLKPGGY  141 (258)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~---------------------~------~-------~~~~~~~~~~l~~i~~~LkpgG~  141 (258)
                           ....+||+|+++-..-                     |      +       -.+..-.+.++.+..++|+|||.
T Consensus       199 -----~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~  273 (1082)
T PLN02672        199 -----DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI  273 (1082)
T ss_pred             -----ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence                 0123699998863110                     0      0       11223347889999999999999


Q ss_pred             EEEEEcCc
Q 025059          142 FLGITPDS  149 (258)
Q Consensus       142 ~i~~~~~~  149 (258)
                      +++.+-..
T Consensus       274 l~lEiG~~  281 (1082)
T PLN02672        274 MIFNMGGR  281 (1082)
T ss_pred             EEEEECcc
Confidence            99885443

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.83  E-value=6.1e-08  Score=79.70  Aligned_cols=104  Identities=15%  Similarity=0.106  Sum_probs=84.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEE-cCCCCCchhhhhhhcCCcee
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFE-ADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~fD  107 (258)
                      +..+|||||++.|-.+..++.. + .++++.+|+++++.+.|++.+...+...++..+. +|..+. + +.  ...++||
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~-l-~~--~~~~~fD  134 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV-L-SR--LLDGSFD  134 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH-H-Hh--ccCCCcc
Confidence            5689999999999888877776 3 4689999999999999999999888776788888 465321 1 11  1468999


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|.+-.       ...+...++..+.++|+|||.+++.
T Consensus       135 liFIDa-------dK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         135 LVFIDA-------DKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             EEEEeC-------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            997654       3566889999999999999999987

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.82  E-value=6.5e-08  Score=77.82  Aligned_cols=124  Identities=20%  Similarity=0.252  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHh-cCCCCEEEEEcCCCCccHHHHHHc--CCC--------eEEEEecChhHHHHHHHHHHhcCCCceeE
Q 025059           16 LYEFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIA--------NYIGIDVATSGIGEARDTWENQRKNFIAE   84 (258)
Q Consensus        16 ~~~~~k~~li~~~-~~~~~~VLDlGcG~G~~~~~~~~~--~~~--------~v~gvD~s~~~l~~a~~~~~~~~~~~~~~   84 (258)
                      ++..+...|+... .+++..|||..||+|..+...+..  ...        +++|.|+++.+++.|++++...+....+.
T Consensus        12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~   91 (179)
T PF01170_consen   12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID   91 (179)
T ss_dssp             S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred             CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence            4455555555544 347889999999999998776554  221        38999999999999999998877666789


Q ss_pred             EEEcCCCCCchhhhhhhcCCceeEEEeccccccccCC----HHHHHHHHHHHHhcccCCcEEEEEE
Q 025059           85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFET----EERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus        85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +.+.|+.+.++      .++.+|+|++.--...-...    ..-...+++++.++|++ ..++++.
T Consensus        92 ~~~~D~~~l~~------~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~  150 (179)
T PF01170_consen   92 FIQWDARELPL------PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT  150 (179)
T ss_dssp             EEE--GGGGGG------TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred             EEecchhhccc------ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence            99999877664      57899999997533221121    23346788999999999 4444443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.81  E-value=1.9e-08  Score=81.33  Aligned_cols=90  Identities=13%  Similarity=0.169  Sum_probs=57.4

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      +++..|-|+|||.+.++..+ ..+. .|...|+-+.                +-..+.+|+.+.|+      ++++.|+|
T Consensus        71 ~~~~viaD~GCGdA~la~~~-~~~~-~V~SfDLva~----------------n~~Vtacdia~vPL------~~~svDv~  126 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAV-PNKH-KVHSFDLVAP----------------NPRVTACDIANVPL------EDESVDVA  126 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH---S----EEEEESS-S----------------STTEEES-TTS-S--------TT-EEEE
T ss_pred             CCCEEEEECCCchHHHHHhc-ccCc-eEEEeeccCC----------------CCCEEEecCccCcC------CCCceeEE
Confidence            45689999999999877554 2233 7999998532                12368899999998      78999999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ++..+|..     .+...++.+..|+|||||.+.+.-..
T Consensus       127 VfcLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAEV~  160 (219)
T PF05148_consen  127 VFCLSLMG-----TNWPDFIREANRVLKPGGILKIAEVK  160 (219)
T ss_dssp             EEES---S-----S-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             EEEhhhhC-----CCcHHHHHHHHheeccCcEEEEEEec
Confidence            88877764     24778999999999999999988433

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.80  E-value=2.9e-08  Score=86.15  Aligned_cols=111  Identities=21%  Similarity=0.194  Sum_probs=86.1

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEc-CCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~fD  107 (258)
                      +.+|..|||-=||||+.+....-.|. +++|+|++..|++-|+.+++..+.. ...+... |+...++      +..++|
T Consensus       195 v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl------~~~~vd  266 (347)
T COG1041         195 VKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPL------RDNSVD  266 (347)
T ss_pred             cccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCC------CCCccc
Confidence            45889999999999999988866676 9999999999999999999876432 3334444 9988887      556899


Q ss_pred             EEEeccccccc----cCC-HHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          108 LVCCFQHLQMC----FET-EERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       108 ~V~~~~~l~~~----~~~-~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      .|++--...-.    -.. .+-...+++.++++|++||++++..|
T Consensus       267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            99874322110    011 34578999999999999999999988

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=1.4e-08  Score=76.91  Aligned_cols=77  Identities=14%  Similarity=0.144  Sum_probs=64.5

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      .|.+++|||||.|.++......+...++|+||++++++.++++.+....  ++++.++|+.+..+      ..+.||.++
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~------~~g~fDtav  119 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLEL------KGGIFDTAV  119 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhc------cCCeEeeEE
Confidence            6899999999999888777666777999999999999999998877644  67899999977665      568999998


Q ss_pred             ecccc
Q 025059          111 CFQHL  115 (258)
Q Consensus       111 ~~~~l  115 (258)
                      ++--+
T Consensus       120 iNppF  124 (185)
T KOG3420|consen  120 INPPF  124 (185)
T ss_pred             ecCCC
Confidence            87533

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.76  E-value=8e-08  Score=77.48  Aligned_cols=113  Identities=14%  Similarity=0.113  Sum_probs=79.6

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+||||.||+|.+....+.++..+++.+|.++.++...+++++..+...++..+..|+..  ..........+||+|.
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~--~l~~~~~~~~~fDiIf  119 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK--FLLKLAKKGEKFDIIF  119 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH--HHHHHHHCTS-EEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH--HHHhhcccCCCceEEE
Confidence            58999999999999999999999999999999999999999999877655468888888632  1112222468999997


Q ss_pred             eccccccccCCHHHHHHHHHHHH--hcccCCcEEEEEEcCc
Q 025059          111 CFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPDS  149 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~--~~LkpgG~~i~~~~~~  149 (258)
                      +--  .|... . ....++..+.  ..|+++|.+++.....
T Consensus       120 lDP--PY~~~-~-~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  120 LDP--PYAKG-L-YYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             E----STTSC-H-HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             ECC--Ccccc-h-HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            643  33112 1 1356666666  8999999999886554

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.75  E-value=4.4e-08  Score=84.74  Aligned_cols=87  Identities=18%  Similarity=0.160  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh
Q 025059           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (258)
Q Consensus        18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   97 (258)
                      +++...+-.....++.+|||||||+|.++..++.... +++++|+++.+++.+++++...+...+++++++|+...++  
T Consensus        23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--   99 (294)
T PTZ00338         23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--   99 (294)
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--
Confidence            3444333333345789999999999999998877654 8999999999999999988764423378999999865433  


Q ss_pred             hhhhcCCceeEEEecc
Q 025059           98 QMQEKANQADLVCCFQ  113 (258)
Q Consensus        98 ~~~~~~~~fD~V~~~~  113 (258)
                            ..||.|+++.
T Consensus       100 ------~~~d~VvaNl  109 (294)
T PTZ00338        100 ------PYFDVCVANV  109 (294)
T ss_pred             ------cccCEEEecC
Confidence                  3689888754

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.75  E-value=6e-08  Score=80.56  Aligned_cols=114  Identities=15%  Similarity=0.132  Sum_probs=85.7

Q ss_pred             CEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      ..+||||||.|.++..++... ...++|+|+....+..|.++....+.. ++.+++.|+..  +...+. ++++.|-|..
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~--~l~~~~-~~~sl~~I~i  125 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVE--VLDYLI-PDGSLDKIYI  125 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHH--HHHhcC-CCCCeeEEEE
Confidence            489999999999999998874 458999999999999999999887654 78899999744  222221 4569999988


Q ss_pred             ccccccc-c---CCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          112 FQHLQMC-F---ETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       112 ~~~l~~~-~---~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      +|.=.+- -   ...--...+++.++++|+|||.+.+.+=+..
T Consensus       126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~  168 (227)
T COG0220         126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEE  168 (227)
T ss_pred             ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHH
Confidence            8743220 0   0001136899999999999999988755543

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.75  E-value=1.4e-07  Score=81.00  Aligned_cols=74  Identities=12%  Similarity=0.073  Sum_probs=59.2

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|.++..++..+. +++|+|+++.|++.++++....    ++.++++|+...++.      +..+|.
T Consensus        40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~~----~v~~i~~D~~~~~~~------~~~~~~  108 (272)
T PRK00274         40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAED----NLTIIEGDALKVDLS------ELQPLK  108 (272)
T ss_pred             CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhccC----ceEEEEChhhcCCHH------HcCcce
Confidence            35788999999999999999988865 9999999999999998877432    789999999776541      111577


Q ss_pred             EEecc
Q 025059          109 VCCFQ  113 (258)
Q Consensus       109 V~~~~  113 (258)
                      |+++.
T Consensus       109 vv~Nl  113 (272)
T PRK00274        109 VVANL  113 (272)
T ss_pred             EEEeC
Confidence            77654

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.75  E-value=2.8e-07  Score=78.33  Aligned_cols=125  Identities=20%  Similarity=0.234  Sum_probs=86.6

Q ss_pred             HHhHHHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHH----cC------CCeEEEEecChhHHHHHHHHH-H------
Q 025059           13 HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWET----AL------IANYIGIDVATSGIGEARDTW-E------   75 (258)
Q Consensus        13 ~~~~~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~----~~------~~~v~gvD~s~~~l~~a~~~~-~------   75 (258)
                      ..-+.+.+...|+..-.....+|+-.||+||.-.--++.    ..      .-+++|+|||..+|+.|+.-. +      
T Consensus        78 f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~  157 (268)
T COG1352          78 FEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLR  157 (268)
T ss_pred             HHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhc
Confidence            333444444444433222468999999999964433322    21      238999999999999997621 1      


Q ss_pred             h------------cC---------CCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHh
Q 025059           76 N------------QR---------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS  134 (258)
Q Consensus        76 ~------------~~---------~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~  134 (258)
                      .            ..         ....+.|.+.|+...+.      ..+.||+|+|-.++-|  -+.+....++..++.
T Consensus       158 ~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~------~~~~fD~IfCRNVLIY--Fd~~~q~~il~~f~~  229 (268)
T COG1352         158 GLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP------FLGKFDLIFCRNVLIY--FDEETQERILRRFAD  229 (268)
T ss_pred             cCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc------ccCCCCEEEEcceEEe--eCHHHHHHHHHHHHH
Confidence            0            00         11135788888766553      2578999999999998  457888999999999


Q ss_pred             cccCCcEEEEE
Q 025059          135 LLKPGGYFLGI  145 (258)
Q Consensus       135 ~LkpgG~~i~~  145 (258)
                      .|+|||++++-
T Consensus       230 ~L~~gG~LflG  240 (268)
T COG1352         230 SLKPGGLLFLG  240 (268)
T ss_pred             HhCCCCEEEEc
Confidence            99999999875

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.75  E-value=1.4e-07  Score=79.37  Aligned_cols=106  Identities=12%  Similarity=0.041  Sum_probs=82.7

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh---cCCc
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---KANQ  105 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~  105 (258)
                      +..+|||||+++|-.+..++..  ..++++.+|++++..+.|++.+...+...+++++.+|+.+  ..+.+..   ..++
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e--~L~~l~~~~~~~~~  156 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP--VLDQMIEDGKYHGT  156 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH--HHHHHHhccccCCc
Confidence            4579999999999888877665  2459999999999999999999888766689999998743  1111111   1368


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ||+|.+-.       ........+..+.++|+|||++++.
T Consensus       157 fD~iFiDa-------dK~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        157 FDFIFVDA-------DKDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             ccEEEecC-------CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence            99997654       2556778889999999999999876

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.74  E-value=6.2e-08  Score=82.47  Aligned_cols=75  Identities=15%  Similarity=0.033  Sum_probs=61.3

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||||||+|.++..++..+ .+++|+|+++.+++.++++....   .++.++++|+...++        ..||.
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~--------~~~d~   94 (258)
T PRK14896         27 DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL--------PEFNK   94 (258)
T ss_pred             CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc--------hhceE
Confidence            4578899999999999999998875 48999999999999999887542   278999999876544        24799


Q ss_pred             EEecccc
Q 025059          109 VCCFQHL  115 (258)
Q Consensus       109 V~~~~~l  115 (258)
                      |+++...
T Consensus        95 Vv~NlPy  101 (258)
T PRK14896         95 VVSNLPY  101 (258)
T ss_pred             EEEcCCc
Confidence            9886543

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.74  E-value=4.7e-08  Score=81.56  Aligned_cols=95  Identities=18%  Similarity=0.249  Sum_probs=70.5

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      ..++||||+|.|..+..++. .+.+|+++++|+.|....++    .    ..+.+  |..+  .    .+.+.+||+|+|
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~~----k----g~~vl--~~~~--w----~~~~~~fDvIsc  157 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLSK----K----GFTVL--DIDD--W----QQTDFKFDVISC  157 (265)
T ss_pred             CCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHHh----C----CCeEE--ehhh--h----hccCCceEEEee
Confidence            46799999999999998855 55689999999999554443    3    22332  3222  1    113568999999


Q ss_pred             ccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ...+.-    -.....+|+.|++.|+|+|.+++...
T Consensus       158 LNvLDR----c~~P~~LL~~i~~~l~p~G~lilAvV  189 (265)
T PF05219_consen  158 LNVLDR----CDRPLTLLRDIRRALKPNGRLILAVV  189 (265)
T ss_pred             hhhhhc----cCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence            987654    34578899999999999999998843

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.73  E-value=1.8e-07  Score=81.53  Aligned_cols=100  Identities=15%  Similarity=0.084  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHH---hcC--CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc-CCCceeEEEE-
Q 025059           16 LYEFAKTALIKI---YSH--PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFE-   87 (258)
Q Consensus        16 ~~~~~k~~li~~---~~~--~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~-   87 (258)
                      +..|+...|...   ..+  ++.+|||||||+|.....++.. ...+++|+|+++.+++.|++....+ ++..++.+.+ 
T Consensus        94 Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~  173 (321)
T PRK11727         94 YIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQ  173 (321)
T ss_pred             HHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEc
Confidence            346666665432   222  4589999999999776666544 3458999999999999999999887 5655677754 


Q ss_pred             cCCCCCchhhhhhhcCCceeEEEecccccc
Q 025059           88 ADPCAENFETQMQEKANQADLVCCFQHLQM  117 (258)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~  117 (258)
                      .|...  +...+..+.+.||+|+|+--.+-
T Consensus       174 ~~~~~--i~~~i~~~~~~fDlivcNPPf~~  201 (321)
T PRK11727        174 KDSKA--IFKGIIHKNERFDATLCNPPFHA  201 (321)
T ss_pred             cchhh--hhhcccccCCceEEEEeCCCCcC
Confidence            33221  11111113578999999876553

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.72  E-value=2.1e-07  Score=79.03  Aligned_cols=71  Identities=11%  Similarity=-0.002  Sum_probs=56.0

Q ss_pred             HHHHHHHh-cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (258)
Q Consensus        21 k~~li~~~-~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (258)
                      ...+++.. ..++.+|||+|||+|.++..++.... .++++|+++.+++.++++....   .++.++++|+...++
T Consensus        18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~---~~v~v~~~D~~~~~~   89 (253)
T TIGR00755        18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLY---ERLEVIEGDALKVDL   89 (253)
T ss_pred             HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcC---CcEEEEECchhcCCh
Confidence            33444433 34778999999999999999988765 7999999999999998877432   278999999977554

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.72  E-value=8e-08  Score=79.96  Aligned_cols=95  Identities=14%  Similarity=0.039  Sum_probs=63.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCcee-EEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIA-EFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|||+|||||.++..++..+..+++|+|+++.|+...   +....   ++ .+...|+.....+...+ .-..+|++
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~---l~~~~---~v~~~~~~ni~~~~~~~~~~-d~~~~Dvs  147 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEK---LRQDE---RVKVLERTNIRYVTPADIFP-DFATFDVS  147 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH---HhcCC---CeeEeecCCcccCCHhHcCC-CceeeeEE
Confidence            6789999999999999999988777999999999888762   21111   22 23444554322211110 12367766


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +++.            ...+..+.++|+| |.+++.
T Consensus       148 fiS~------------~~~l~~i~~~l~~-~~~~~L  170 (228)
T TIGR00478       148 FISL------------ISILPELDLLLNP-NDLTLL  170 (228)
T ss_pred             Eeeh------------HhHHHHHHHHhCc-CeEEEE
Confidence            5433            2358889999999 777665

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.71  E-value=1.6e-07  Score=80.64  Aligned_cols=105  Identities=13%  Similarity=0.072  Sum_probs=86.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      .+..|||+|||+|.++...+..+..+|++++.| +|.++|++..+.+....++..+.+.+.+..+       +++.|+|+
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-------PEk~DviI  248 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL-------PEKVDVII  248 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC-------chhccEEE
Confidence            578999999999998888888888899999965 7889999988888777789999999877665       57899987


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +- .+.+++.++..++..+- .++.|+|.|..+=+
T Consensus       249 SE-PMG~mL~NERMLEsYl~-Ark~l~P~GkMfPT  281 (517)
T KOG1500|consen  249 SE-PMGYMLVNERMLESYLH-ARKWLKPNGKMFPT  281 (517)
T ss_pred             ec-cchhhhhhHHHHHHHHH-HHhhcCCCCcccCc
Confidence            64 46667777777776665 45999999998755

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.71  E-value=2.1e-07  Score=72.36  Aligned_cols=109  Identities=16%  Similarity=0.075  Sum_probs=86.3

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .+.-|||+|.|||-++.+++.++  ...++.++.|++.+....++++.      +.++.+|+.+..-.... .+...||.
T Consensus        48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~------~~ii~gda~~l~~~l~e-~~gq~~D~  120 (194)
T COG3963          48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG------VNIINGDAFDLRTTLGE-HKGQFFDS  120 (194)
T ss_pred             cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC------ccccccchhhHHHHHhh-cCCCeeee
Confidence            57799999999999999999885  45899999999999999888864      46899998764411111 15678999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |+|..-+..  -+.....++++.+...|.+||.++-.+..
T Consensus       121 viS~lPll~--~P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         121 VISGLPLLN--FPMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             EEecccccc--CcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence            999766554  45667789999999999999999876443

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.70  E-value=1.2e-07  Score=86.53  Aligned_cols=105  Identities=18%  Similarity=0.187  Sum_probs=74.1

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||+|||+|.++..++... .+++|+|+++.+++.|++++..++.. +++++++|+.+. + ..+.....+||+|
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~-l-~~~~~~~~~~D~v  366 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETV-L-PKQPWAGQIPDVL  366 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHH-H-HHHHhcCCCCCEE
Confidence            466899999999999999987764 48999999999999999998776543 789999997431 1 1111124579999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ++.-.-..      -...+++.+.+ ++|+++++++
T Consensus       367 i~dPPr~G------~~~~~l~~l~~-l~~~~ivyvs  395 (431)
T TIGR00479       367 LLDPPRKG------CAAEVLRTIIE-LKPERIVYVS  395 (431)
T ss_pred             EECcCCCC------CCHHHHHHHHh-cCCCEEEEEc
Confidence            76432110      02344554443 7898877665

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK04148 hypothetical protein; Provisional

Probab=98.69  E-value=3.6e-07  Score=69.36  Aligned_cols=96  Identities=14%  Similarity=0.132  Sum_probs=69.5

Q ss_pred             CCCEEEEEcCCCCc-cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~-~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|||+|||.|. .+..+.+.+. .|+++|+++.+++.++++        .+.+++.|+++.++.     --..+|+|
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~-----~y~~a~li   81 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLE-----IYKNAKLI   81 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHH-----HHhcCCEE
Confidence            45789999999996 6777776666 999999999999888765        467899999876653     24678999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .+.-       ...++...+-++++.+.  .-+++....+
T Consensus        82 ysir-------pp~el~~~~~~la~~~~--~~~~i~~l~~  112 (134)
T PRK04148         82 YSIR-------PPRDLQPFILELAKKIN--VPLIIKPLSG  112 (134)
T ss_pred             EEeC-------CCHHHHHHHHHHHHHcC--CCEEEEcCCC
Confidence            7643       45556666666666544  4455553333

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.66  E-value=3e-07  Score=82.78  Aligned_cols=136  Identities=21%  Similarity=0.265  Sum_probs=107.9

Q ss_pred             ccCCCCCcchHHhHHHHHH-HHHHHHhcCCCC-EEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCC
Q 025059            3 VLPIPRSELTHHRLYEFAK-TALIKIYSHPYV-TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN   80 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~k-~~li~~~~~~~~-~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~   80 (258)
                      +|+ +|...+..++-.|+. ...|..+..+-. ++|-+|||+-.+...+.+.++..++.+|+|+..++....+....+  
T Consensus        19 rf~-~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~--   95 (482)
T KOG2352|consen   19 RFQ-PRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER--   95 (482)
T ss_pred             hcc-ccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC--
Confidence            455 455666667666653 456666777766 999999999999999988899999999999999999887775332  


Q ss_pred             ceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHH------HHHHHHHHHHhcccCCcEEEEEEc
Q 025059           81 FIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEE------RARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus        81 ~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~------~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ....+...|+....+      ++++||+|+.-..++..+....      .....+.+++++|++||+++..+.
T Consensus        96 ~~~~~~~~d~~~l~f------edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen   96 PEMQMVEMDMDQLVF------EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             cceEEEEecchhccC------CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            257889999988887      7899999999988887666554      345788999999999999876643

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.62  E-value=7.6e-08  Score=78.45  Aligned_cols=100  Identities=17%  Similarity=0.145  Sum_probs=71.9

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ...++.+|||+.||-|.++..+++. ....|+++|++|.+++.+++..+.++....+..+++|+....       +...|
T Consensus        98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~-------~~~~~  170 (200)
T PF02475_consen   98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL-------PEGKF  170 (200)
T ss_dssp             C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----------TT-E
T ss_pred             cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc-------Ccccc
Confidence            3667999999999999999999873 445899999999999999999988877667889999975432       26799


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF  142 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~  142 (258)
                      |.|++...-        ....++..+.+++++||++
T Consensus       171 drvim~lp~--------~~~~fl~~~~~~~~~~g~i  198 (200)
T PF02475_consen  171 DRVIMNLPE--------SSLEFLDAALSLLKEGGII  198 (200)
T ss_dssp             EEEEE--TS--------SGGGGHHHHHHHEEEEEEE
T ss_pred             CEEEECChH--------HHHHHHHHHHHHhcCCcEE
Confidence            999886521        1345778888899999875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.61  E-value=4.1e-07  Score=81.51  Aligned_cols=102  Identities=18%  Similarity=0.205  Sum_probs=73.3

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||++||+|.++..++..+ .+++|+|+++.+++.|+++.+..+.. ++.|.++|+.+..  ..   ...+||+|+
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~--~~---~~~~~D~vi  305 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFA--TA---QMSAPELVL  305 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHH--Hh---cCCCCCEEE
Confidence            46799999999999998888665 58999999999999999998877553 7899999974321  11   124699997


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +.-.-.      .-...+++.+. .++|+++++++.
T Consensus       306 ~DPPr~------G~~~~~l~~l~-~~~p~~ivyvsc  334 (374)
T TIGR02085       306 VNPPRR------GIGKELCDYLS-QMAPKFILYSSC  334 (374)
T ss_pred             ECCCCC------CCcHHHHHHHH-hcCCCeEEEEEe
Confidence            753211      11233444443 378998888774

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.60  E-value=2.9e-07  Score=76.36  Aligned_cols=88  Identities=14%  Similarity=0.212  Sum_probs=68.4

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      +....|.|+|||.+.++.    .....|+.+|+-+.                +-.++.+|+.+.|+      .+++.|++
T Consensus       179 ~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~----------------~~~V~~cDm~~vPl------~d~svDva  232 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV----------------NERVIACDMRNVPL------EDESVDVA  232 (325)
T ss_pred             cCceEEEecccchhhhhh----ccccceeeeeeecC----------------CCceeeccccCCcC------ccCcccEE
Confidence            466889999999987655    22337999997311                33578899999888      78999999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ++..+|..     .++..++.++.|+|++||.+.+.-..
T Consensus       233 V~CLSLMg-----tn~~df~kEa~RiLk~gG~l~IAEv~  266 (325)
T KOG3045|consen  233 VFCLSLMG-----TNLADFIKEANRILKPGGLLYIAEVK  266 (325)
T ss_pred             EeeHhhhc-----ccHHHHHHHHHHHhccCceEEEEehh
Confidence            87766543     35788999999999999999988443

>PLN02823 spermine synthase

Probab=98.57  E-value=9.4e-07  Score=77.74  Aligned_cols=112  Identities=15%  Similarity=0.100  Sum_probs=79.4

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcC---CCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      +...+||.||+|.|..+..+++. +..+++.+|+++++++.|++.+....   ...+++++.+|+..  +   +....++
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~--~---L~~~~~~  176 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA--E---LEKRDEK  176 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH--H---HhhCCCC
Confidence            34578999999999999888775 45689999999999999998875421   13378999999743  2   2224578


Q ss_pred             eeEEEeccccccccCCH--HHHHHHHH-HHHhcccCCcEEEEEE
Q 025059          106 ADLVCCFQHLQMCFETE--ERARRLLQ-NVSSLLKPGGYFLGIT  146 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~--~~~~~~l~-~i~~~LkpgG~~i~~~  146 (258)
                      ||+|++-..-...-...  --...+++ .+.+.|+|||++++..
T Consensus       177 yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        177 FDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             ccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            99998753110000000  01346777 8999999999998763

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.52  E-value=4.7e-07  Score=81.12  Aligned_cols=108  Identities=14%  Similarity=0.186  Sum_probs=79.2

Q ss_pred             CCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      +.+|||++||+|..+..++.. +...|+++|+++.+++.++++.+.++.. .+.+.+.|+..  +   +. ..+.||+|.
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~--~---l~-~~~~fD~V~  130 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANA--L---LH-EERKFDVVD  130 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHH--H---Hh-hcCCCCEEE
Confidence            468999999999999988765 4458999999999999999998776543 45688888632  1   11 145799997


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHH
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~  154 (258)
                      +.- .    .   ....++....+.+++||++.++.-|...+..
T Consensus       131 lDP-~----G---s~~~~l~~al~~~~~~gilyvSAtD~~~L~g  166 (382)
T PRK04338        131 IDP-F----G---SPAPFLDSAIRSVKRGGLLCVTATDTAPLCG  166 (382)
T ss_pred             ECC-C----C---CcHHHHHHHHHHhcCCCEEEEEecCchhhcC
Confidence            742 1    1   1235667766778999999999777655533

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.52  E-value=1.7e-06  Score=79.41  Aligned_cols=113  Identities=12%  Similarity=0.063  Sum_probs=82.2

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .|+.+|||+|||.|+=+..++..  +.+.+++.|+++.-++..+++++..+.. ++.+...|.....  ..   ..+.||
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~--~~---~~~~fD  185 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFG--AA---LPETFD  185 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhh--hh---chhhcC
Confidence            58899999999999998888775  3458999999999999999999876543 5777888865421  11   246799


Q ss_pred             EEEe----ccc--cccc-----cCCH-------HHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          108 LVCC----FQH--LQMC-----FETE-------ERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       108 ~V~~----~~~--l~~~-----~~~~-------~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      .|++    +..  ++.-     ..+.       .-..++|.++.++|||||+++-+|+.
T Consensus       186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence            9984    321  1110     0011       12378899999999999999888665

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.51  E-value=1.2e-06  Score=81.49  Aligned_cols=114  Identities=13%  Similarity=0.058  Sum_probs=82.8

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .+..+||||||.|.++..++.. +...++|+|++...+..|.++....++. ++.+++.|+..  +...+  +++++|.|
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~--~~~~~--~~~sv~~i  421 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDL--ILNDL--PNNSLDGI  421 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHH--HHHhc--CcccccEE
Confidence            4578999999999999999887 4458999999999999888887665543 67777776521  22222  56889999


Q ss_pred             Eecccccccc----CCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCF----ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~----~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .+.|.=.|--    ...--...++..++++|+|||.+.+.+=+.
T Consensus       422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~  465 (506)
T PRK01544        422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE  465 (506)
T ss_pred             EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence            8887433200    001123689999999999999998775444

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.51  E-value=1.3e-06  Score=71.05  Aligned_cols=114  Identities=14%  Similarity=0.186  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHHHhcC-CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC
Q 025059           15 RLYEFAKTALIKIYSH-PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE   93 (258)
Q Consensus        15 ~~~~~~k~~li~~~~~-~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~   93 (258)
                      -+..|++......... +..++||+||=+..+...  ..+.-.|+.||+++.                .-.+.+.|..+.
T Consensus        34 ~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~----------------~~~I~qqDFm~r   95 (219)
T PF11968_consen   34 WLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ----------------HPGILQQDFMER   95 (219)
T ss_pred             HHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCC----------------CCCceeeccccC
Confidence            4557777665443322 347999999865543222  223336999998752                224566776655


Q ss_pred             chhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcE-----EEEEEcCch
Q 025059           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGY-----FLGITPDSS  150 (258)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~-----~i~~~~~~~  150 (258)
                      ++..   ...++||+|+++.++.| +.+......++..+.+.|+|+|.     +++..|.+.
T Consensus        96 plp~---~~~e~FdvIs~SLVLNf-VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C  153 (219)
T PF11968_consen   96 PLPK---NESEKFDVISLSLVLNF-VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC  153 (219)
T ss_pred             CCCC---CcccceeEEEEEEEEee-CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence            5411   14689999999999997 56688899999999999999999     888888764

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.49  E-value=9.3e-06  Score=68.99  Aligned_cols=117  Identities=15%  Similarity=0.129  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHhcC-----CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc--CCC---------
Q 025059           17 YEFAKTALIKIYSH-----PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--RKN---------   80 (258)
Q Consensus        17 ~~~~k~~li~~~~~-----~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~---------   80 (258)
                      ..++.+.|-..+-+     ...+||--|||.|+++..++..++ .+.|.|.|--|+-..+-.+...  ...         
T Consensus        37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~  115 (270)
T PF07942_consen   37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS  115 (270)
T ss_pred             HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence            35566565444431     347899999999999999999988 8999999999987654433210  000         


Q ss_pred             ----------------------------ceeEEEEcCCCCCchhhhhhhc--CCceeEEEeccccccccCCHHHHHHHHH
Q 025059           81 ----------------------------FIAEFFEADPCAENFETQMQEK--ANQADLVCCFQHLQMCFETEERARRLLQ  130 (258)
Q Consensus        81 ----------------------------~~~~~~~~d~~~~~~~~~~~~~--~~~fD~V~~~~~l~~~~~~~~~~~~~l~  130 (258)
                                                  .++....+|..+     .....  .++||+|+..|    ..++.+++-..++
T Consensus       116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e-----~y~~~~~~~~~d~VvT~F----FIDTA~Ni~~Yi~  186 (270)
T PF07942_consen  116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLE-----VYGPDENKGSFDVVVTCF----FIDTAENIIEYIE  186 (270)
T ss_pred             ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEE-----ecCCcccCCcccEEEEEE----EeechHHHHHHHH
Confidence                                        011222222111     11112  47999998776    5678899999999


Q ss_pred             HHHhcccCCcEEE
Q 025059          131 NVSSLLKPGGYFL  143 (258)
Q Consensus       131 ~i~~~LkpgG~~i  143 (258)
                      .|.++|||||+.|
T Consensus       187 tI~~lLkpgG~WI  199 (270)
T PF07942_consen  187 TIEHLLKPGGYWI  199 (270)
T ss_pred             HHHHHhccCCEEE
Confidence            9999999999664

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.47  E-value=9e-07  Score=77.32  Aligned_cols=115  Identities=18%  Similarity=0.170  Sum_probs=74.6

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--------CCCeEEEEecChhHHHHHHHHHHhcCCCc-eeEEEEcCCCCCchhhhhhh
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--------LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQE  101 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~  101 (258)
                      ++.+|||.+||+|+++..+...        ....++|+|+++.++..|+.++.-.+... ...+.+.|....+...    
T Consensus        46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~----  121 (311)
T PF02384_consen   46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI----  121 (311)
T ss_dssp             TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT----
T ss_pred             ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc----
Confidence            5678999999999999887662        44589999999999999887764432211 2357888875543310    


Q ss_pred             cCCceeEEEeccccccc-c----------------CCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          102 KANQADLVCCFQHLQMC-F----------------ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~-~----------------~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ...+||+|+++-..... +                .....--.++..+.+.|++||.+.+.+|++
T Consensus       122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~  186 (311)
T PF02384_consen  122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG  186 (311)
T ss_dssp             ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred             cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence            24789999986433211 0                001122358899999999999998888875

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=1e-06  Score=70.98  Aligned_cols=104  Identities=18%  Similarity=0.116  Sum_probs=78.0

Q ss_pred             HHhcCCCCEEEEEcCCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHhcC---------CCceeEEEEcCCCCC
Q 025059           26 KIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQR---------KNFIAEFFEADPCAE   93 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~---------~~~~~~~~~~d~~~~   93 (258)
                      +..++||.+.||+|+|+|-++..++..   .....+|||.-++.++.+++++...-         ...+..++.+|+...
T Consensus        77 ~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g  156 (237)
T KOG1661|consen   77 DDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG  156 (237)
T ss_pred             HHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc
Confidence            445789999999999999988877643   22245999999999999999876432         122568889998654


Q ss_pred             chhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .-      ...+||.|.|..+          .....+++...|++||.+++-
T Consensus       157 ~~------e~a~YDaIhvGAa----------a~~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  157 YA------EQAPYDAIHVGAA----------ASELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             CC------ccCCcceEEEccC----------ccccHHHHHHhhccCCeEEEe
Confidence            43      4689999988753          234566777889999998875

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.42  E-value=1.4e-06  Score=75.13  Aligned_cols=80  Identities=16%  Similarity=0.060  Sum_probs=61.5

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .|+..+||++||.|+++..++...  .++|+|+|.++.|++.|++++..   ..++.++++|..+.  ...+.....++|
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l--~~~l~~~~~~vD   92 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNL--KEVLAEGLGKVD   92 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHH--HHHHHcCCCccC
Confidence            478899999999999999999874  36999999999999999998865   22789999997653  222221112799


Q ss_pred             EEEeccc
Q 025059          108 LVCCFQH  114 (258)
Q Consensus       108 ~V~~~~~  114 (258)
                      .|++-.+
T Consensus        93 gIl~DLG   99 (296)
T PRK00050         93 GILLDLG   99 (296)
T ss_pred             EEEECCC
Confidence            9877543

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.42  E-value=3.9e-06  Score=74.95  Aligned_cols=105  Identities=10%  Similarity=0.193  Sum_probs=79.7

Q ss_pred             CCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           32 YVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      +.+|||+.||+|..+..++..  +..+|+++|+++.+++.++++.+.++.. ++.+.+.|+...     +.....+||+|
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~-----l~~~~~~fDvI  118 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANV-----LRYRNRKFHVI  118 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHH-----HHHhCCCCCEE
Confidence            368999999999999999887  5679999999999999999999776543 577888886432     11124679999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      ..-- ..       ....++..+.+.+++||++.+|..|..
T Consensus       119 dlDP-fG-------s~~~fld~al~~~~~~glL~vTaTD~~  151 (374)
T TIGR00308       119 DIDP-FG-------TPAPFVDSAIQASAERGLLLVTATDTS  151 (374)
T ss_pred             EeCC-CC-------CcHHHHHHHHHhcccCCEEEEEecccH
Confidence            6632 11       123678888889999999999966553

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.41  E-value=2.6e-06  Score=73.99  Aligned_cols=97  Identities=19%  Similarity=0.167  Sum_probs=82.5

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      -...+|+|.|.|..+..+.. .+.++-++++....+..++..+. .    .++.+.+|+... .        .+-|+|.+
T Consensus       178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~-~--------P~~daI~m  242 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQD-T--------PKGDAIWM  242 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-C----Ccceeccccccc-C--------CCcCeEEE
Confidence            37899999999999999988 56689999999988888877764 2    477888888654 2        24569999


Q ss_pred             ccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +..+|+  .+.++..++|+++...|+|||.+++.
T Consensus       243 kWiLhd--wtDedcvkiLknC~~sL~~~GkIiv~  274 (342)
T KOG3178|consen  243 KWILHD--WTDEDCVKILKNCKKSLPPGGKIIVV  274 (342)
T ss_pred             Eeeccc--CChHHHHHHHHHHHHhCCCCCEEEEE
Confidence            999998  68899999999999999999999887

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.41  E-value=4.8e-07  Score=72.77  Aligned_cols=107  Identities=19%  Similarity=0.118  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh----hhhcCC
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKAN  104 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~  104 (258)
                      ++.+||||||++|+++..+....  ..+++|+|+.+..         ..   ..+.++++|+.+......    +.....
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~   90 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------PL---QNVSFIQGDITNPENIKDIRKLLPESGE   90 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S----TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------cc---cceeeeecccchhhHHHhhhhhcccccc
Confidence            34899999999999999998886  4699999998771         00   145666777654322212    211237


Q ss_pred             ceeEEEeccccccc----cCC---HHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          105 QADLVCCFQHLQMC----FET---EERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       105 ~fD~V~~~~~l~~~----~~~---~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .+|+|+|-.+....    .+.   .+-....+.-+...|+|||.+++-....
T Consensus        91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~  142 (181)
T PF01728_consen   91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG  142 (181)
T ss_dssp             SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred             CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence            99999987633211    111   2233445555667799999998876554

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.40  E-value=3.5e-07  Score=77.06  Aligned_cols=100  Identities=24%  Similarity=0.317  Sum_probs=79.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      +.+..++|+|||+|..+.   ..+...++|.|++...+.-|+..-       ......+|+...++      .+.+||.+
T Consensus        44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~~-------~~~~~~ad~l~~p~------~~~s~d~~  107 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRSG-------GDNVCRADALKLPF------REESFDAA  107 (293)
T ss_pred             CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccCC-------CceeehhhhhcCCC------CCCccccc
Confidence            358899999999995332   224457999999988887776442       12577889888777      68899999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ++..++|+ +.+......+++++.++|+|||..++..
T Consensus       108 lsiavihh-lsT~~RR~~~l~e~~r~lrpgg~~lvyv  143 (293)
T KOG1331|consen  108 LSIAVIHH-LSTRERRERALEELLRVLRPGGNALVYV  143 (293)
T ss_pred             hhhhhhhh-hhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence            99999997 5668888999999999999999987773

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.40  E-value=5.5e-06  Score=65.43  Aligned_cols=116  Identities=18%  Similarity=0.257  Sum_probs=82.7

Q ss_pred             CCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           32 YVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ...+||||||+|..+..++..  +...+.++|+++.+++...+....++.  +++.+++|+..     .+  ..++.|++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~-----~l--~~~~VDvL  114 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLS-----GL--RNESVDVL  114 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHh-----hh--ccCCccEE
Confidence            578999999999888877665  455799999999999998888877743  56778888643     22  23778877


Q ss_pred             Eecccc---------------ccc--cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc---hHHHHHH
Q 025059          110 CCFQHL---------------QMC--FETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKY  156 (258)
Q Consensus       110 ~~~~~l---------------~~~--~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~---~~~~~~~  156 (258)
                      +.+-..               .|+  -.+.+-.+.++..+-.+|.|.|++++.....   ..+.+.+
T Consensus       115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l  181 (209)
T KOG3191|consen  115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKIL  181 (209)
T ss_pred             EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHH
Confidence            543210               111  2334557888999999999999999885544   3444433

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.38  E-value=4.8e-06  Score=71.40  Aligned_cols=109  Identities=14%  Similarity=0.124  Sum_probs=81.4

Q ss_pred             CEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcC--C-CceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR--K-NFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .+||-||-|.|+.+..+++.. ..+++.+||++..++.|++.++...  . ..++.++..|...     -+.+...+||+
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~-----~v~~~~~~fDv  152 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE-----FLRDCEEKFDV  152 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH-----HHHhCCCcCCE
Confidence            599999999999999999884 6799999999999999999886542  1 2478888888632     22223458999


Q ss_pred             EEeccccccccCCHH--HHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCFETEE--RARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~--~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++-..=. . ...+  --..+++.+.++|+++|+++...-+
T Consensus       153 Ii~D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~  192 (282)
T COG0421         153 IIVDSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQAGS  192 (282)
T ss_pred             EEEcCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            98754211 0 0001  1378999999999999999988333

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.37  E-value=2.2e-06  Score=71.78  Aligned_cols=75  Identities=13%  Similarity=0.062  Sum_probs=64.5

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..|++.|||+|.|||.++.+++..+. .|+++++++.|+.+..+|..+.....+.+++++|....++        ..||+
T Consensus        56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--------P~fd~  126 (315)
T KOG0820|consen   56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--------PRFDG  126 (315)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--------cccce
Confidence            45889999999999999999988877 9999999999999999999887655578999999876543        47888


Q ss_pred             EEec
Q 025059          109 VCCF  112 (258)
Q Consensus       109 V~~~  112 (258)
                      ++++
T Consensus       127 cVsN  130 (315)
T KOG0820|consen  127 CVSN  130 (315)
T ss_pred             eecc
Confidence            8774

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.37  E-value=6.5e-06  Score=69.54  Aligned_cols=114  Identities=13%  Similarity=0.065  Sum_probs=78.2

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcC---CCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      .+...+||=||-|.|+.+..+.+.. ..+++.+|+++.+++.|++.+....   ...+++++..|...  +   +.....
T Consensus        74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~--~---l~~~~~  148 (246)
T PF01564_consen   74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK--F---LKETQE  148 (246)
T ss_dssp             SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH--H---HHTSSS
T ss_pred             CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH--H---HHhccC
Confidence            3457899999999999999988775 5699999999999999998765421   12378999999632  2   222334


Q ss_pred             -ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          105 -QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       105 -~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                       +||+|++-..-.......--...+++.+.++|+|||+++....
T Consensus       149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~  192 (246)
T PF01564_consen  149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG  192 (246)
T ss_dssp             T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence             8999987332110000001136789999999999999998853

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.36  E-value=2.3e-07  Score=83.89  Aligned_cols=100  Identities=23%  Similarity=0.211  Sum_probs=67.2

Q ss_pred             CEEEEEcCCCCccHHHHHHcCCCeEEEE---ecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           33 VTVCDLYCGAGVDVDKWETALIANYIGI---DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ..+||+|||.|.++..+...+. ..+.+   |..+..++.|.+|--      .+.+-.......++      +++.||+|
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleRGv------pa~~~~~~s~rLPf------p~~~fDmv  185 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALERGV------PAMIGVLGSQRLPF------PSNAFDMV  185 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhcCc------chhhhhhccccccC------Cccchhhh
Confidence            4699999999999999988766 22222   444455666655521      11221221234555      78999999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      .|+.++..  . .+.-..+|-++.|+|+|||+|+.+.|.
T Consensus       186 Hcsrc~i~--W-~~~~g~~l~evdRvLRpGGyfv~S~pp  221 (506)
T PF03141_consen  186 HCSRCLIP--W-HPNDGFLLFEVDRVLRPGGYFVLSGPP  221 (506)
T ss_pred             hccccccc--c-hhcccceeehhhhhhccCceEEecCCc
Confidence            99887653  1 122246888999999999999999664

; GO: 0008168 methyltransferase activity

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.36  E-value=2.8e-06  Score=74.34  Aligned_cols=107  Identities=17%  Similarity=0.062  Sum_probs=86.8

Q ss_pred             HhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ....+|.+|||+=+|-|.++..++..+...|+++|++|.+++..++++..++....+..+++|+.....      ..+.+
T Consensus       184 ~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~------~~~~a  257 (341)
T COG2520         184 ELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP------ELGVA  257 (341)
T ss_pred             hhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh------ccccC
Confidence            344569999999999999999999987767999999999999999999988776678999999866443      23789


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |.|++...        .....++....+.+++||++-.-..
T Consensus       258 DrIim~~p--------~~a~~fl~~A~~~~k~~g~iHyy~~  290 (341)
T COG2520         258 DRIIMGLP--------KSAHEFLPLALELLKDGGIIHYYEF  290 (341)
T ss_pred             CEEEeCCC--------CcchhhHHHHHHHhhcCcEEEEEec
Confidence            99988652        2345677778888899999876633

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.36  E-value=7.5e-07  Score=78.92  Aligned_cols=118  Identities=19%  Similarity=0.179  Sum_probs=93.0

Q ss_pred             HHHHHH---HHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc
Q 025059           18 EFAKTA---LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (258)
Q Consensus        18 ~~~k~~---li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~   94 (258)
                      .|.+..   .+..-+.|+..++|+|||-|+............++|+|.++..+..+...........+..++.+|+.+.+
T Consensus        94 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~  173 (364)
T KOG1269|consen   94 FWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP  173 (364)
T ss_pred             HHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC
Confidence            355533   33444567889999999999999988888777999999999998887776655433335566888887777


Q ss_pred             hhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        95 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +      .++.||.|.+..+..|    .++....++++.++++|||.++.-
T Consensus       174 f------edn~fd~v~~ld~~~~----~~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  174 F------EDNTFDGVRFLEVVCH----APDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             C------CccccCcEEEEeeccc----CCcHHHHHHHHhcccCCCceEEeH
Confidence            7      6899999988886655    667889999999999999999765

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=6.1e-06  Score=67.03  Aligned_cols=118  Identities=17%  Similarity=0.140  Sum_probs=79.1

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCC--CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (258)
                      +.++..|+|||+..|++++.+++...  ..|+|+|+.|-.         ..   ..+.++++|+...+..+.+..  ...
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------~~---~~V~~iq~d~~~~~~~~~l~~~l~~~  110 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------PI---PGVIFLQGDITDEDTLEKLLEALGGA  110 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------cC---CCceEEeeeccCccHHHHHHHHcCCC
Confidence            45889999999999999998887732  359999997543         11   158999999988765443322  344


Q ss_pred             ceeEEEeccccc----cc---cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc---hHHHHHHHH
Q 025059          105 QADLVCCFQHLQ----MC---FETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQK  158 (258)
Q Consensus       105 ~fD~V~~~~~l~----~~---~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~---~~~~~~~~~  158 (258)
                      .+|+|++-.+-.    ..   .....-...++.-+..+|+|||.|++-...+   +.+...+++
T Consensus       111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~  174 (205)
T COG0293         111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR  174 (205)
T ss_pred             CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH
Confidence            579998755431    10   1112334566777778999999999885554   344444443

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.34  E-value=9.6e-06  Score=61.71  Aligned_cols=102  Identities=24%  Similarity=0.247  Sum_probs=69.7

Q ss_pred             EEEEcCCCCccHHHHHHcCC--CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC--CchhhhhhhcC-CceeEE
Q 025059           35 VCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQEKA-NQADLV  109 (258)
Q Consensus        35 VLDlGcG~G~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~-~~fD~V  109 (258)
                      ++|+|||+|... .+.....  ..++|+|+++.++..++..... .....+.+...|...  .++      .. ..||++
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~  123 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF------EDSASFDLV  123 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC------CCCCceeEE
Confidence            999999999855 2222222  3799999999999986555432 111015778787654  343      33 489999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                       +.....+...    ....+.++.+.++|+|.+++.....
T Consensus       124 -~~~~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~~  158 (257)
T COG0500         124 -ISLLVLHLLP----PAKALRELLRVLKPGGRLVLSDLLR  158 (257)
T ss_pred             -eeeeehhcCC----HHHHHHHHHHhcCCCcEEEEEeccC
Confidence             5544433222    6789999999999999999886654

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.33  E-value=2.4e-05  Score=62.70  Aligned_cols=113  Identities=15%  Similarity=0.052  Sum_probs=82.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      .+.++||+-+|+|.+....+.++...++.+|.+..++...+++.+..+...++.++..|+.  .+.+... ..++||+|.
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~--~~L~~~~-~~~~FDlVf  119 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL--RALKQLG-TREPFDLVF  119 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH--HHHHhcC-CCCcccEEE
Confidence            5899999999999999999999999999999999999999999887765558888999875  2211111 123599997


Q ss_pred             eccccccccCCHHHHHHHHHH--HHhcccCCcEEEEEEcCc
Q 025059          111 CFQHLQMCFETEERARRLLQN--VSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~--i~~~LkpgG~~i~~~~~~  149 (258)
                      .--..+.  . .-+....+..  -...|+|+|.+++.....
T Consensus       120 lDPPy~~--~-l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         120 LDPPYAK--G-LLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             eCCCCcc--c-hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            6443331  1 2212223333  557899999999885543

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.33  E-value=7.8e-06  Score=72.99  Aligned_cols=103  Identities=9%  Similarity=0.058  Sum_probs=69.4

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc---------
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK---------  102 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------  102 (258)
                      +.+|||++||+|.++..+++. ..+++|+|+++.+++.|+++...++.. ++.++++|+.+.  .+.+...         
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~--l~~~~~~~~~~~~~~~  282 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEF--TQAMNGVREFNRLKGI  282 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHH--HHHHhhcccccccccc
Confidence            357999999999999977665 459999999999999999998776543 789999998441  1111100         


Q ss_pred             ---CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          103 ---ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       103 ---~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                         ..+||+|+.--. +.     .-...+++.+.+   |++++++++.
T Consensus       283 ~~~~~~~D~v~lDPP-R~-----G~~~~~l~~l~~---~~~ivyvSC~  321 (362)
T PRK05031        283 DLKSYNFSTIFVDPP-RA-----GLDDETLKLVQA---YERILYISCN  321 (362)
T ss_pred             cccCCCCCEEEECCC-CC-----CCcHHHHHHHHc---cCCEEEEEeC
Confidence               125899976432 11     012344444443   6777776633

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.31  E-value=1.3e-05  Score=65.66  Aligned_cols=107  Identities=10%  Similarity=0.090  Sum_probs=83.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcee
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD  107 (258)
                      ...++||||.=||-.+..++..  ..++|+++|+++...+.+.+..+..+...+++++++++.+ .+.+.+++ ..++||
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e-sLd~l~~~~~~~tfD  151 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE-SLDELLADGESGTFD  151 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh-hHHHHHhcCCCCcee
Confidence            3579999999999888888776  3469999999999999998877766655589999998754 23322222 468999


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .|..-.       ..........++.+++|+||++++.
T Consensus       152 faFvDa-------dK~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  152 FAFVDA-------DKDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             EEEEcc-------chHHHHHHHHHHHhhcccccEEEEe
Confidence            996543       2445668999999999999999887

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.29  E-value=1.7e-05  Score=76.71  Aligned_cols=130  Identities=15%  Similarity=0.062  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHh-c-CCCCEEEEEcCCCCccHHHHHHc------------------------------------------
Q 025059           17 YEFAKTALIKIY-S-HPYVTVCDLYCGAGVDVDKWETA------------------------------------------   52 (258)
Q Consensus        17 ~~~~k~~li~~~-~-~~~~~VLDlGcG~G~~~~~~~~~------------------------------------------   52 (258)
                      +.-+...++... . .++..++|.+||+|.++...+..                                          
T Consensus       174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~  253 (702)
T PRK11783        174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA  253 (702)
T ss_pred             cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence            334444444443 3 46789999999999998776541                                          


Q ss_pred             -CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHH
Q 025059           53 -LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQN  131 (258)
Q Consensus        53 -~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~  131 (258)
                       ...+++|+|+++.+++.|+.++...+....+.+.++|+.+.+..    ...++||+|+++--...-.....+...+...
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~----~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~  329 (702)
T PRK11783        254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNP----LPKGPTGLVISNPPYGERLGEEPALIALYSQ  329 (702)
T ss_pred             ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccc----cccCCCCEEEECCCCcCccCchHHHHHHHHH
Confidence             01269999999999999999998887655689999998764431    0235799999985433222333444444444


Q ss_pred             HHhcc---cCCcEEEEEEcCch
Q 025059          132 VSSLL---KPGGYFLGITPDSS  150 (258)
Q Consensus       132 i~~~L---kpgG~~i~~~~~~~  150 (258)
                      +.+.+   .+|+.+.+.+++..
T Consensus       330 lg~~lk~~~~g~~~~llt~~~~  351 (702)
T PRK11783        330 LGRRLKQQFGGWNAALFSSSPE  351 (702)
T ss_pred             HHHHHHHhCCCCeEEEEeCCHH
Confidence            44444   48988888777653

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.28  E-value=1.9e-06  Score=67.82  Aligned_cols=75  Identities=20%  Similarity=0.228  Sum_probs=53.0

Q ss_pred             EEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEec
Q 025059           34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (258)
Q Consensus        34 ~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~  112 (258)
                      .|+|+.||-|+++..+++... +|+++|+++..++.|+.+.+-.+...+++++++|..+.  ..... ....+|+|.+.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~--~~~~~-~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL--LKRLK-SNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH--GGGB-------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH--Hhhcc-ccccccEEEEC
Confidence            699999999999999988754 89999999999999999998776656899999997542  11111 11128999874

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.28  E-value=8.1e-06  Score=72.62  Aligned_cols=58  Identities=12%  Similarity=0.219  Sum_probs=49.5

Q ss_pred             CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC
Q 025059           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA   92 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~   92 (258)
                      .+|||++||+|.++..+++.. ..++|+|+++.|++.|+++...++.. ++.++++|+.+
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHH
Confidence            479999999999999777654 59999999999999999998877543 68999999843

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.28  E-value=1.2e-05  Score=65.84  Aligned_cols=118  Identities=19%  Similarity=0.177  Sum_probs=68.6

Q ss_pred             HHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHh-------cC-CCceeEEEEcCC
Q 025059           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN-------QR-KNFIAEFFEADP   90 (258)
Q Consensus        20 ~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~-------~~-~~~~~~~~~~d~   90 (258)
                      +..++-..-+.++...+|||||.|..+...+.. +..+.+||++.+...+.|+...+.       .+ ...++.+.++|+
T Consensus        31 ~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf  110 (205)
T PF08123_consen   31 VSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF  110 (205)
T ss_dssp             HHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred             HHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence            333333333568899999999999887766544 666799999999988777653321       11 123678899998


Q ss_pred             CCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        91 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+.+....+   -...|+|.++...   |  .+++...+.++...||+|..+|-+
T Consensus       111 l~~~~~~~~---~s~AdvVf~Nn~~---F--~~~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  111 LDPDFVKDI---WSDADVVFVNNTC---F--DPDLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             TTHHHHHHH---GHC-SEEEE--TT---T---HHHHHHHHHHHTTS-TT-EEEES
T ss_pred             cccHhHhhh---hcCCCEEEEeccc---c--CHHHHHHHHHHHhcCCCCCEEEEC
Confidence            765432221   1357999887632   2  345666778888899999887654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.26  E-value=8.5e-06  Score=76.32  Aligned_cols=81  Identities=11%  Similarity=0.061  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC---------CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL---------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~---------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (258)
                      ...+|||.|||+|.++..+....         ...++|+|+++.++..|+.++.... .....+.+.|.....+.. ...
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~~~~i~~~d~l~~~~~~-~~~  108 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LLEINVINFNSLSYVLLN-IES  108 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CCCceeeecccccccccc-ccc
Confidence            34689999999999998886541         1378999999999999998876553 123445555532211100 001


Q ss_pred             cCCceeEEEecc
Q 025059          102 KANQADLVCCFQ  113 (258)
Q Consensus       102 ~~~~fD~V~~~~  113 (258)
                      ..+.||+|+++-
T Consensus       109 ~~~~fD~IIgNP  120 (524)
T TIGR02987       109 YLDLFDIVITNP  120 (524)
T ss_pred             ccCcccEEEeCC
Confidence            236899998864

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.23  E-value=1.5e-06  Score=71.16  Aligned_cols=109  Identities=12%  Similarity=0.070  Sum_probs=79.5

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC-CCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-KNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .+.+|||.|.|-|-.+...+..+..+|+-++.+++.++.|+-+.=+.+ ....++++.+|+.+  +-+.+  .+.+||+|
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e--~V~~~--~D~sfDaI  209 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE--VVKDF--DDESFDAI  209 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH--HHhcC--CccccceE
Confidence            589999999999999999999888899999999999998865421111 12257889999743  22222  57889999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~  144 (258)
                      +-- ..+++.-+.--..++-.++.|+|+|||.++=
T Consensus       210 iHD-PPRfS~AgeLYseefY~El~RiLkrgGrlFH  243 (287)
T COG2521         210 IHD-PPRFSLAGELYSEEFYRELYRILKRGGRLFH  243 (287)
T ss_pred             eeC-CCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence            542 1222223334467899999999999999864

>PRK00536 speE spermidine synthase; Provisional

Probab=98.20  E-value=2.6e-05  Score=66.23  Aligned_cols=99  Identities=10%  Similarity=0.024  Sum_probs=73.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC---CCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      +...+||=||.|.|+.++.+++.+. +++-+||++++++.+++.++...   .+.+++++..      +.   ....++|
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~------~~---~~~~~~f  140 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ------LL---DLDIKKY  140 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh------hh---hccCCcC
Confidence            3568999999999999999999874 99999999999999999665421   1225555431      10   0024789


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |+|++-..     .    -..+.+.+.++|+|||+++...-
T Consensus       141 DVIIvDs~-----~----~~~fy~~~~~~L~~~Gi~v~Qs~  172 (262)
T PRK00536        141 DLIICLQE-----P----DIHKIDGLKRMLKEDGVFISVAK  172 (262)
T ss_pred             CEEEEcCC-----C----ChHHHHHHHHhcCCCcEEEECCC
Confidence            99987531     1    24677899999999999998743

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=98.19  E-value=3.2e-05  Score=61.43  Aligned_cols=109  Identities=18%  Similarity=0.064  Sum_probs=69.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEc-CCCCCchhhhhh--hcCC
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQ--EKAN  104 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~--~~~~  104 (258)
                      .|+.+|||+||..|.+++-..+.  +.+.+.|+|+-.-        .+..    .+.++++ |+.+......+.  .++.
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~----Ga~~i~~~dvtdp~~~~ki~e~lp~r  135 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPE----GATIIQGNDVTDPETYRKIFEALPNR  135 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCC----CcccccccccCCHHHHHHHHHhCCCC
Confidence            48899999999999998766554  5578999998421        1112    4566666 776654332221  1678


Q ss_pred             ceeEEEeccccccc----cCC---HHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          105 QADLVCCFQHLQMC----FET---EERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       105 ~fD~V~~~~~l~~~----~~~---~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      ..|+|++-++-.-.    .++   .+--..++--....++|+|.|++-+-++.
T Consensus       136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~  188 (232)
T KOG4589|consen  136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS  188 (232)
T ss_pred             cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence            99999886533211    111   11123344555677889999999987774

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=1.1e-05  Score=67.93  Aligned_cols=76  Identities=12%  Similarity=0.054  Sum_probs=61.2

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||||+|.|.++..+++.+. +|+++++++.+++..+++.....   +++++++|+...++.+.     ..++.
T Consensus        28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~---n~~vi~~DaLk~d~~~l-----~~~~~   98 (259)
T COG0030          28 ISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYD---NLTVINGDALKFDFPSL-----AQPYK   98 (259)
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccccc---ceEEEeCchhcCcchhh-----cCCCE
Confidence            45789999999999999999988877 79999999999999999876322   78999999987666210     15677


Q ss_pred             EEecc
Q 025059          109 VCCFQ  113 (258)
Q Consensus       109 V~~~~  113 (258)
                      |+++-
T Consensus        99 vVaNl  103 (259)
T COG0030          99 VVANL  103 (259)
T ss_pred             EEEcC
Confidence            76643

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.16  E-value=2.4e-05  Score=63.04  Aligned_cols=110  Identities=16%  Similarity=0.129  Sum_probs=77.7

Q ss_pred             HHHHHHHhcCCCC-EEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh
Q 025059           21 KTALIKIYSHPYV-TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (258)
Q Consensus        21 k~~li~~~~~~~~-~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   98 (258)
                      -+..+..+++... +++|+|+|.|-=...++-. +..+++.+|....-+...+.-....++. +++.++..+.+ ..   
T Consensus        37 DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~---  111 (184)
T PF02527_consen   37 DSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PE---  111 (184)
T ss_dssp             HHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TT---
T ss_pred             HHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cc---
Confidence            3444444555444 8999999999655555444 4458999999998888777766666554 68899888754 11   


Q ss_pred             hhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                         ...+||+|++-..-        .+..++.-+...+++||.+++..
T Consensus       112 ---~~~~fd~v~aRAv~--------~l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  112 ---YRESFDVVTARAVA--------PLDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             ---TTT-EEEEEEESSS--------SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             ---cCCCccEEEeehhc--------CHHHHHHHHHHhcCCCCEEEEEc
Confidence               47899999886532        26678888999999999998873

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.16  E-value=1.8e-05  Score=66.37  Aligned_cols=105  Identities=16%  Similarity=0.109  Sum_probs=84.2

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      -+.||.+|||-|+|+|.++..+++.  +.++++-+|+-+.-.+.|.+-++..+.+..+++.+-|++...+..    +...
T Consensus       102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~----ks~~  177 (314)
T KOG2915|consen  102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI----KSLK  177 (314)
T ss_pred             cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc----cccc
Confidence            3569999999999999999999886  557999999999889999999999888889999999998866521    4678


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|.|..-         .+....++..+..+||.+|.-++.
T Consensus       178 aDaVFLD---------lPaPw~AiPha~~~lk~~g~r~cs  208 (314)
T KOG2915|consen  178 ADAVFLD---------LPAPWEAIPHAAKILKDEGGRLCS  208 (314)
T ss_pred             cceEEEc---------CCChhhhhhhhHHHhhhcCceEEe
Confidence            9999442         233456677777789988854444

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.08  E-value=9.1e-05  Score=65.54  Aligned_cols=121  Identities=17%  Similarity=0.100  Sum_probs=88.3

Q ss_pred             HhcCCCCEEEEEcCCCCccHHHHHHcCC---------------------------------C-------eEEEEecChhH
Q 025059           27 IYSHPYVTVCDLYCGAGVDVDKWETALI---------------------------------A-------NYIGIDVATSG   66 (258)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~~~~~~~---------------------------------~-------~v~gvD~s~~~   66 (258)
                      .-..++..++|.-||+|.++...+....                                 .       .++|+|+++.+
T Consensus       187 agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~  266 (381)
T COG0116         187 AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH  266 (381)
T ss_pred             cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence            3455777899999999999887765421                                 1       37899999999


Q ss_pred             HHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCH---H-HHHHHHHHHHhcccCCcEE
Q 025059           67 IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETE---E-RARRLLQNVSSLLKPGGYF  142 (258)
Q Consensus        67 l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~---~-~~~~~l~~i~~~LkpgG~~  142 (258)
                      ++.|+.+....+....+.|.++|+....-      +.+.+|+|+|+-.-.--+.+.   . -...+.+.+++.++-.+.+
T Consensus       267 i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~------~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~  340 (381)
T COG0116         267 IEGAKANARAAGVGDLIEFKQADATDLKE------PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRY  340 (381)
T ss_pred             HHHHHHHHHhcCCCceEEEEEcchhhCCC------CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceE
Confidence            99999999988887789999999976442      226899999974322111222   2 3456667788889999999


Q ss_pred             EEEEcCchHHH
Q 025059          143 LGITPDSSTIW  153 (258)
Q Consensus       143 i~~~~~~~~~~  153 (258)
                      ++++.......
T Consensus       341 v~tt~e~~~~~  351 (381)
T COG0116         341 VFTTSEDLLFC  351 (381)
T ss_pred             EEEccHHHHHH
Confidence            98866554333

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.07  E-value=8.9e-05  Score=57.17  Aligned_cols=105  Identities=20%  Similarity=0.221  Sum_probs=68.5

Q ss_pred             CCCCEEEEEcCCCCccHHHHHH-----cCCCeEEEEecChhHHHHHHHHHHhcC--CCceeEEEEcCCCCCchhhhhhhc
Q 025059           30 HPYVTVCDLYCGAGVDVDKWET-----ALIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      .+...|+|+|||.|.++..++.     ....+++|+|.++..++.+.++.+...  ...+..+...++.+..       .
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------~   96 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-------S   96 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-------c
Confidence            4678999999999999999888     545599999999999999988877654  2224555555543221       1


Q ss_pred             CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      ....++++..++...    .  ...+++...+   ++-.+++..|-+.
T Consensus        97 ~~~~~~~vgLHaCG~----L--s~~~l~~~~~---~~~~~l~~vpCCy  135 (141)
T PF13679_consen   97 SDPPDILVGLHACGD----L--SDRALRLFIR---PNARFLVLVPCCY  135 (141)
T ss_pred             cCCCeEEEEeecccc----h--HHHHHHHHHH---cCCCEEEEcCCcc
Confidence            455666664443322    2  2334444433   6666676666653

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.07  E-value=3.3e-05  Score=66.31  Aligned_cols=119  Identities=16%  Similarity=0.113  Sum_probs=74.9

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .+.+|||+|||+|.-+..+...  ...+++++|.|+.|++.++............... .+......      +....|+
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~------~~~~~DL  105 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLYRDFL------PFPPDDL  105 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhhcccc------cCCCCcE
Confidence            3478999999999655444332  3458999999999999998876543211011111 11100000      2233499


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE---EcCchHHHHHHHHhH
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV  160 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~---~~~~~~~~~~~~~~~  160 (258)
                      |++.++|.-+ .+ .....+++++-+.+.+  ++++.   +|.+.......++.+
T Consensus       106 vi~s~~L~EL-~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l  156 (274)
T PF09243_consen  106 VIASYVLNEL-PS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQL  156 (274)
T ss_pred             EEEehhhhcC-Cc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHH
Confidence            9999999864 33 6778888888887766  77777   444445555555543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.99  E-value=0.0001  Score=60.43  Aligned_cols=110  Identities=11%  Similarity=0.023  Sum_probs=76.0

Q ss_pred             EEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 025059           35 VCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (258)
Q Consensus        35 VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~  113 (258)
                      |.||||-.|.+...+...+. .+++++|+++..++.|++.....++..++++..+|... .+.     +.+..|+|++..
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~-----~~e~~d~ivIAG   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLK-----PGEDVDTIVIAG   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G-------GGG---EEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccC-----CCCCCCEEEEec
Confidence            68999999999999988865 47999999999999999999988777789999999633 121     223378887765


Q ss_pred             ccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHH
Q 025059          114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (258)
Q Consensus       114 ~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~  156 (258)
                      +      +-.....++++....++....||+.-.+.....+++
T Consensus        75 M------GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~  111 (205)
T PF04816_consen   75 M------GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRW  111 (205)
T ss_dssp             E-------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHH
T ss_pred             C------CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHH
Confidence            3      244577888888888877777887755554444433

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.98  E-value=6.7e-05  Score=63.44  Aligned_cols=110  Identities=16%  Similarity=0.198  Sum_probs=70.3

Q ss_pred             CEEEEEcCC--CCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh--hcCCce
Q 025059           33 VTVCDLYCG--AGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA  106 (258)
Q Consensus        33 ~~VLDlGcG--~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~f  106 (258)
                      ...||||||  |-++...+++.  +.++|+-+|.++..+..++..+.....+ ...++++|+.+..  ..+.  .-.+-+
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g-~t~~v~aD~r~p~--~iL~~p~~~~~l  146 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRG-RTAYVQADLRDPE--AILAHPEVRGLL  146 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTS-EEEEEE--TT-HH--HHHCSHHHHCC-
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCc-cEEEEeCCCCCHH--HHhcCHHHHhcC
Confidence            459999999  45677777664  5679999999999999999988776422 5899999997632  1111  011223


Q ss_pred             e-----EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          107 D-----LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       107 D-----~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |     .|++...+|++ ...++...++..+...|.||.+++++-
T Consensus       147 D~~rPVavll~~vLh~v-~D~~dp~~iv~~l~d~lapGS~L~ish  190 (267)
T PF04672_consen  147 DFDRPVAVLLVAVLHFV-PDDDDPAGIVARLRDALAPGSYLAISH  190 (267)
T ss_dssp             -TTS--EEEECT-GGGS--CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred             CCCCCeeeeeeeeeccC-CCccCHHHHHHHHHHhCCCCceEEEEe
Confidence            3     35666678874 555678999999999999999999993

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=0.00028  Score=62.87  Aligned_cols=124  Identities=16%  Similarity=0.144  Sum_probs=84.7

Q ss_pred             HHHHHHhcC--CCCEEEEEcCCCCccHHHHHHcC---CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059           22 TALIKIYSH--PYVTVCDLYCGAGVDVDKWETAL---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (258)
Q Consensus        22 ~~li~~~~~--~~~~VLDlGcG~G~~~~~~~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (258)
                      |.+....+.  ||.+|||+|++.|+=+..++...   ...|+++|+++.-+...+++++..+.. ++...+.|....+- 
T Consensus       145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~-  222 (355)
T COG0144         145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAE-  222 (355)
T ss_pred             HHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccc-
Confidence            445444443  88999999999999888887763   235699999999999999998877654 36677777643221 


Q ss_pred             hhhhhcCCceeEEEecc------ccc------cccCC------HHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059           97 TQMQEKANQADLVCCFQ------HLQ------MCFET------EERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus        97 ~~~~~~~~~fD~V~~~~------~l~------~~~~~------~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                       ... ..++||.|++-.      +++      +....      ..-..++|.+..++|||||.++-++++-
T Consensus       223 -~~~-~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~  291 (355)
T COG0144         223 -LLP-GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL  291 (355)
T ss_pred             -ccc-ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence             000 123699997632      121      10110      1234788999999999999999886653

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=5.8e-05  Score=68.68  Aligned_cols=112  Identities=18%  Similarity=0.217  Sum_probs=78.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+=||.|.++..++.. ..+|+|+|+++.+++.|+++.+.++.. ++.|..+++.+...  ... ....+|+|+
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~~--~~~-~~~~~d~Vv  367 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFTP--AWW-EGYKPDVVV  367 (432)
T ss_pred             CCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHHhh--hcc-ccCCCCEEE
Confidence            6689999999999999999754 459999999999999999999888765 59999999755322  110 235889997


Q ss_pred             eccccccccCCHHHHH-HHHHHHHhcccCCcEEEEEEcCchHHHHHH
Q 025059          111 CFQHLQMCFETEERAR-RLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~-~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~  156 (258)
                      .--       +...+. .+++.+. .++|-.+++++ +|...+.+.+
T Consensus       368 vDP-------PR~G~~~~~lk~l~-~~~p~~IvYVS-CNP~TlaRDl  405 (432)
T COG2265         368 VDP-------PRAGADREVLKQLA-KLKPKRIVYVS-CNPATLARDL  405 (432)
T ss_pred             ECC-------CCCCCCHHHHHHHH-hcCCCcEEEEe-CCHHHHHHHH
Confidence            643       122233 4444444 45777777776 4444444333

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.92  E-value=0.00022  Score=58.51  Aligned_cols=106  Identities=14%  Similarity=0.082  Sum_probs=74.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      +.+|.+||-||.++|.....+++- + .+.|++++.|+.+....-.-.+...   ++--+..|+....-...+   -+..
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~---NIiPIl~DAr~P~~Y~~l---v~~V  144 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP---NIIPILEDARHPEKYRML---VEMV  144 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST---TEEEEES-TTSGGGGTTT---S--E
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC---ceeeeeccCCChHHhhcc---cccc
Confidence            348999999999999999988775 3 5689999999977665544333332   677788888764432222   3589


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+|.+--+.      ..+.+-++.|+...||+||.+++.+
T Consensus       145 DvI~~DVaQ------p~Qa~I~~~Na~~fLk~gG~~~i~i  178 (229)
T PF01269_consen  145 DVIFQDVAQ------PDQARIAALNARHFLKPGGHLIISI  178 (229)
T ss_dssp             EEEEEE-SS------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEecCCC------hHHHHHHHHHHHhhccCCcEEEEEE
Confidence            999775432      4567889999999999999999883

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.86  E-value=0.00067  Score=57.88  Aligned_cols=86  Identities=13%  Similarity=0.078  Sum_probs=62.7

Q ss_pred             HHHHHHHHh-cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh
Q 025059           20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (258)
Q Consensus        20 ~k~~li~~~-~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   98 (258)
                      +...+++.. ..++..|||+|+|+|.++..++..+ .+++++|+++.+++..++++....   +++++.+|+........
T Consensus        18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~---~~~vi~~D~l~~~~~~~   93 (262)
T PF00398_consen   18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNP---NVEVINGDFLKWDLYDL   93 (262)
T ss_dssp             HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCS---SEEEEES-TTTSCGGGH
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcc---cceeeecchhccccHHh
Confidence            333344433 3478999999999999999998888 699999999999999998876332   89999999987655221


Q ss_pred             hhhcCCceeEEEec
Q 025059           99 MQEKANQADLVCCF  112 (258)
Q Consensus        99 ~~~~~~~fD~V~~~  112 (258)
                      +   .+....|+++
T Consensus        94 ~---~~~~~~vv~N  104 (262)
T PF00398_consen   94 L---KNQPLLVVGN  104 (262)
T ss_dssp             C---SSSEEEEEEE
T ss_pred             h---cCCceEEEEE
Confidence            1   2344555554

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.85  E-value=0.00012  Score=55.89  Aligned_cols=87  Identities=16%  Similarity=0.195  Sum_probs=59.5

Q ss_pred             eEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccc-------cCCHHHHHHH
Q 025059           56 NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC-------FETEERARRL  128 (258)
Q Consensus        56 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-------~~~~~~~~~~  128 (258)
                      +|+|+||.+++++.++++++......++.+++.+-.+  +...+  +.++.|+|+-  .+.|.       ....+....+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~--l~~~i--~~~~v~~~iF--NLGYLPggDk~i~T~~~TTl~A   74 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN--LDEYI--PEGPVDAAIF--NLGYLPGGDKSITTKPETTLKA   74 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG--GGGT----S--EEEEEE--EESB-CTS-TTSB--HHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH--HHhhC--ccCCcCEEEE--ECCcCCCCCCCCCcCcHHHHHH
Confidence            5899999999999999999987665579999887543  33333  2358999854  44443       2334567889


Q ss_pred             HHHHHhcccCCcEEEEEEcC
Q 025059          129 LQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       129 l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ++.+.++|+|||.+++..-.
T Consensus        75 l~~al~lL~~gG~i~iv~Y~   94 (140)
T PF06962_consen   75 LEAALELLKPGGIITIVVYP   94 (140)
T ss_dssp             HHHHHHHEEEEEEEEEEE--
T ss_pred             HHHHHHhhccCCEEEEEEeC
Confidence            99999999999999988544

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.85  E-value=0.00028  Score=60.29  Aligned_cols=109  Identities=15%  Similarity=0.071  Sum_probs=65.5

Q ss_pred             CCEEEEEcCCCCccHHHHHHc--C-CCeEEEEecChhHHHHHHHHHH-hcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           32 YVTVCDLYCGAGVDVDKWETA--L-IANYIGIDVATSGIGEARDTWE-NQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~--~-~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      +.+|+=||||.=.++.-+...  + ...++++|+++++++.+++-.. ..+++.++.|+++|+.+...      .-..||
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~------dl~~~D  194 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY------DLKEYD  194 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G------G----S
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc------ccccCC
Confidence            359999999987666555543  2 3479999999999999988766 23334489999999865432      236899


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +|+...-..   .+.+....++.++.+.++||..++.-..++
T Consensus       195 vV~lAalVg---~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G  233 (276)
T PF03059_consen  195 VVFLAALVG---MDAEPKEEILEHLAKHMAPGARLVVRSAHG  233 (276)
T ss_dssp             EEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred             EEEEhhhcc---cccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence            997665222   245568899999999999999998875554

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.83  E-value=0.00013  Score=60.32  Aligned_cols=99  Identities=16%  Similarity=0.069  Sum_probs=72.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCce-eEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++..+||+|+.||+++..++..+..+|+++|.....+..-   ++...   + +.+...|+.......    -.+..|++
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k---LR~d~---rV~~~E~tN~r~l~~~~----~~~~~d~~  148 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK---LRNDP---RVIVLERTNVRYLTPED----FTEKPDLI  148 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh---HhcCC---cEEEEecCChhhCCHHH----cccCCCeE
Confidence            7899999999999999999999999999999998776643   22221   3 344555554322211    13477899


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +|--++.       .+..+|..+..+++|+|.++..+
T Consensus       149 v~DvSFI-------SL~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         149 VIDVSFI-------SLKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             EEEeehh-------hHHHHHHHHHHhcCCCceEEEEe
Confidence            8865433       37889999999999999988763

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.83  E-value=0.00014  Score=64.72  Aligned_cols=57  Identities=25%  Similarity=0.402  Sum_probs=44.7

Q ss_pred             CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCC
Q 025059           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC   91 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~   91 (258)
                      .+|||+-||.|.++..++... .+|+|+|+++.+++.|++.+..++.. +++|+.+++.
T Consensus       198 ~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~  254 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAE  254 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SH
T ss_pred             CcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeecc
Confidence            389999999999999996654 49999999999999999999887654 7899988763

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.75  E-value=0.00018  Score=57.71  Aligned_cols=118  Identities=19%  Similarity=0.113  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhcC------CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCC
Q 025059           17 YEFAKTALIKIYSH------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP   90 (258)
Q Consensus        17 ~~~~k~~li~~~~~------~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~   90 (258)
                      +-|.--+.+.+++.      .+.+|||+|+|+|--+...+..+...++..|+.+..+...+-+.+.++  ..+.+...|+
T Consensus        59 ~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang--v~i~~~~~d~  136 (218)
T COG3897          59 FAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG--VSILFTHADL  136 (218)
T ss_pred             HHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc--ceeEEeeccc
Confidence            45555555555542      579999999999988888888888899999999888777766666664  3788888887


Q ss_pred             CCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEE-EEcCch
Q 025059           91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG-ITPDSS  150 (258)
Q Consensus        91 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~-~~~~~~  150 (258)
                      ..         .+..||+|+..-.+.    +......++. ....|+..|..++ -.|...
T Consensus       137 ~g---------~~~~~Dl~LagDlfy----~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~  183 (218)
T COG3897         137 IG---------SPPAFDLLLAGDLFY----NHTEADRLIP-WKDRLAEAGAAVLVGDPGRA  183 (218)
T ss_pred             cC---------CCcceeEEEeeceec----CchHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence            44         357899998876433    4555667777 5555555555444 355443

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.74  E-value=0.00047  Score=59.15  Aligned_cols=108  Identities=15%  Similarity=0.148  Sum_probs=67.6

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHH--hcCCCcee-EEEEcCCCCCc--------------
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE--NQRKNFIA-EFFEADPCAEN--------------   94 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~--~~~~~~~~-~~~~~d~~~~~--------------   94 (258)
                      ..+||--|||.|+++..++..++ ..-|-+.|--|+-...=.+.  .....+.+ .|++.-.....              
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~  229 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH  229 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence            46899999999999999999887 67777888877654332221  11000011 12222111100              


Q ss_pred             -----------------hhhhhh--hcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEE
Q 025059           95 -----------------FETQMQ--EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (258)
Q Consensus        95 -----------------~~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~  144 (258)
                                       |.+...  ...+.||+|+..|    ..++..+.-..+..|.++|+|||+.+=
T Consensus       230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf----FIDTa~NileYi~tI~~iLk~GGvWiN  294 (369)
T KOG2798|consen  230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF----FIDTAHNILEYIDTIYKILKPGGVWIN  294 (369)
T ss_pred             ccccCCCCCCccccccceeEEecCcCCCCccceEEEEE----EeechHHHHHHHHHHHHhccCCcEEEe
Confidence                             000000  1235799987665    456788899999999999999998863

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.73  E-value=3.3e-05  Score=62.86  Aligned_cols=101  Identities=19%  Similarity=0.167  Sum_probs=71.5

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      ...|+|..||-|+....++..+. .|+++|+++.-|.-|+.+++-.+...+++|+++|+.+  +...++-....+|+|..
T Consensus        95 ~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld--~~~~lq~~K~~~~~vf~  171 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD--LASKLKADKIKYDCVFL  171 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH--HHHHHhhhhheeeeeec
Confidence            46799999999999999988776 8999999999999999999887766699999999854  22233222334667755


Q ss_pred             ccccccccCCHHHHHHHHHHHHhcccCC
Q 025059          112 FQHLQMCFETEERARRLLQNVSSLLKPG  139 (258)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~i~~~Lkpg  139 (258)
                      +-..    ...+.+..-+-.+...+.|.
T Consensus       172 sppw----ggp~y~~~~~~DL~~~~~p~  195 (263)
T KOG2730|consen  172 SPPW----GGPSYLRADVYDLETHLKPM  195 (263)
T ss_pred             CCCC----CCcchhhhhhhhhhhhcchh
Confidence            4422    22344444444555555554

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.69  E-value=0.00041  Score=57.06  Aligned_cols=105  Identities=19%  Similarity=0.106  Sum_probs=73.6

Q ss_pred             HHHhcCC-CCEEEEEcCCCCccHHHHH-HcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059           25 IKIYSHP-YVTVCDLYCGAGVDVDKWE-TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        25 i~~~~~~-~~~VLDlGcG~G~~~~~~~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      +..+.+. +.+++|||+|.|-=...++ ..+..+++-+|....-+...+.-....++. ++.++++.+.+..       +
T Consensus        60 ~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~-------~  131 (215)
T COG0357          60 LLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFG-------Q  131 (215)
T ss_pred             hhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcc-------c
Confidence            3334444 5899999999996555554 234447999999988877776666555442 5889988875532       1


Q ss_pred             CCc-eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQ-ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~-fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ... ||+|++-.        ...+..++.-+...+++||.+++.
T Consensus       132 ~~~~~D~vtsRA--------va~L~~l~e~~~pllk~~g~~~~~  167 (215)
T COG0357         132 EKKQYDVVTSRA--------VASLNVLLELCLPLLKVGGGFLAY  167 (215)
T ss_pred             ccccCcEEEeeh--------ccchHHHHHHHHHhcccCCcchhh
Confidence            223 99998764        333677888899999999987644

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.69  E-value=0.00032  Score=60.56  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=79.1

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++..|||+|+|.|+=+..++..  ..+.+++.|+++.-+...+.+....+.. .+.....|.....  ...  ....||
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~--~~~--~~~~fd  158 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLD--PKK--PESKFD  158 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHH--HHH--HTTTEE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeecccccc--ccc--cccccc
Confidence            37899999999999988877766  3569999999999999999988776543 4555656643321  111  244699


Q ss_pred             EEEecc------cccc------cc--CCH----HHHHHHHHHHHhcc----cCCcEEEEEEcC
Q 025059          108 LVCCFQ------HLQM------CF--ETE----ERARRLLQNVSSLL----KPGGYFLGITPD  148 (258)
Q Consensus       108 ~V~~~~------~l~~------~~--~~~----~~~~~~l~~i~~~L----kpgG~~i~~~~~  148 (258)
                      .|.+-.      .+..      ..  ...    .-..++|.++.+.+    +|||+++-++.+
T Consensus       159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS  221 (283)
T PF01189_consen  159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS  221 (283)
T ss_dssp             EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred             hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence            997632      1110      00  000    22478899999999    999999988655

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=8.3e-05  Score=57.75  Aligned_cols=120  Identities=14%  Similarity=0.088  Sum_probs=78.3

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcC--CCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      .+.+|||+|.|=-+++.-+...  +...|..+|-++.+++..++....+.  ...++.....+....    ..+....+|
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a----qsq~eq~tF  104 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA----QSQQEQHTF  104 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh----HHHHhhCcc
Confidence            4678999998854444433322  55689999999999998877654431  000111111111100    111135699


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHH
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~  158 (258)
                      |+|+|..++.+    .+....+++.|.++|+|.|..++..|....-..++..
T Consensus       105 DiIlaADClFf----dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~d  152 (201)
T KOG3201|consen  105 DIILAADCLFF----DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLD  152 (201)
T ss_pred             cEEEeccchhH----HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHH
Confidence            99999988776    6778899999999999999999888876444444443

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.65  E-value=0.00028  Score=61.71  Aligned_cols=94  Identities=14%  Similarity=0.057  Sum_probs=62.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.++|||||++|+++..+...+. +|++||..+-.     ..+...+   ++...+.|......      +.+.+|.
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~-----~~L~~~~---~V~h~~~d~fr~~p------~~~~vDw  273 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMA-----QSLMDTG---QVEHLRADGFKFRP------PRKNVDW  273 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcC-----HhhhCCC---CEEEEeccCcccCC------CCCCCCE
Confidence            35899999999999999999999887 99999965421     2222222   78888888754221      2568999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCC--cEEEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPG--GYFLGI  145 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg--G~~i~~  145 (258)
                      |+|-.+.        ......+-|.+-|..|  ..+|++
T Consensus       274 vVcDmve--------~P~rva~lm~~Wl~~g~cr~aIfn  304 (357)
T PRK11760        274 LVCDMVE--------KPARVAELMAQWLVNGWCREAIFN  304 (357)
T ss_pred             EEEeccc--------CHHHHHHHHHHHHhcCcccEEEEE
Confidence            9886532        2334445555555444  344444

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.63  E-value=0.0006  Score=58.83  Aligned_cols=100  Identities=13%  Similarity=0.098  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHhcC--CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc-CCCceeEEEEcCCCC
Q 025059           17 YEFAKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCA   92 (258)
Q Consensus        17 ~~~~k~~li~~~~~--~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~   92 (258)
                      .-|+...|......  ...++||||||....---+... ...+++|+|+++.+++.|++..+.+ .+..++.+....-..
T Consensus        86 i~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~  165 (299)
T PF05971_consen   86 IHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPD  165 (299)
T ss_dssp             HHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-
T ss_pred             HHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcc
Confidence            36777665433211  2568999999987542222222 2349999999999999999999888 666678887664322


Q ss_pred             CchhhhhhhcCCceeEEEecccccc
Q 025059           93 ENFETQMQEKANQADLVCCFQHLQM  117 (258)
Q Consensus        93 ~~~~~~~~~~~~~fD~V~~~~~l~~  117 (258)
                       .+...+....+.||..+|+--+|.
T Consensus       166 -~i~~~i~~~~e~~dftmCNPPFy~  189 (299)
T PF05971_consen  166 -NIFDGIIQPNERFDFTMCNPPFYS  189 (299)
T ss_dssp             -SSTTTSTT--S-EEEEEE-----S
T ss_pred             -ccchhhhcccceeeEEecCCcccc
Confidence             222222234579999999876664

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.61  E-value=0.00033  Score=57.12  Aligned_cols=107  Identities=19%  Similarity=0.228  Sum_probs=56.7

Q ss_pred             CCEEEEEcCCCCccHHHHHHc-----CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059           32 YVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (258)
                      +..|+|+|.-.|+.+..++..     +.++|+|+|+.-.....  +..+.+.+..+++++++|..+......+..  ...
T Consensus        33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~  110 (206)
T PF04989_consen   33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP  110 (206)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred             CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence            489999999999988877653     44699999996544322  223333333389999999877554332211  122


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ...+|+- -+-|    +.++....|+....++++|+++|+.
T Consensus       111 ~~vlVil-Ds~H----~~~hvl~eL~~y~plv~~G~Y~IVe  146 (206)
T PF04989_consen  111 HPVLVIL-DSSH----THEHVLAELEAYAPLVSPGSYLIVE  146 (206)
T ss_dssp             SSEEEEE-SS--------SSHHHHHHHHHHT--TT-EEEET
T ss_pred             CceEEEE-CCCc----cHHHHHHHHHHhCccCCCCCEEEEE
Confidence            3334432 2222    2344667778899999999999875

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.60  E-value=8.2e-05  Score=54.24  Aligned_cols=100  Identities=18%  Similarity=0.140  Sum_probs=43.7

Q ss_pred             EEEcCCCCccHHHHHHc----CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           36 CDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        36 LDlGcG~G~~~~~~~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      ||+|+..|..+..++..    +..+++++|..+. .+.+++.++..+...++++++++..+  ..+.+  +.+++|+|..
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~--~l~~~--~~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPD--FLPSL--PDGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THH--HHHHH--HH--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHH--HHHHc--CCCCEEEEEE
Confidence            68999999887777654    2237999999985 22333333333333378999998733  22223  2479999976


Q ss_pred             ccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      -.. |    ..+.....+..+.+.|+|||++++-
T Consensus        76 Dg~-H----~~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   76 DGD-H----SYEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             ES--------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCC-C----CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            542 2    2466788899999999999998874

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.54  E-value=0.00029  Score=54.01  Aligned_cols=58  Identities=9%  Similarity=-0.024  Sum_probs=46.9

Q ss_pred             EEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC
Q 025059           34 TVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA   92 (258)
Q Consensus        34 ~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~   92 (258)
                      +|||+|||.|..+..++.... .+++++|+++.+++.+++++..++.. ++.+++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence            489999999999888877654 38999999999999999998766432 47777777644

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.54  E-value=0.0046  Score=50.00  Aligned_cols=105  Identities=16%  Similarity=0.092  Sum_probs=77.9

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      +.++.+||=||..+|......++- +.+.++|++.|+.+....-.......   ++--+..|+....-...   --+..|
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~---Ni~PIL~DA~~P~~Y~~---~Ve~VD  147 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP---NIIPILEDARKPEKYRH---LVEKVD  147 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC---CceeeecccCCcHHhhh---hccccc
Confidence            348999999999999999988876 44689999999998876655554433   56667788765432222   245689


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|.+--+      ...+.+-+..|+..-|++||.+++.
T Consensus       148 viy~DVA------Qp~Qa~I~~~Na~~FLk~~G~~~i~  179 (231)
T COG1889         148 VIYQDVA------QPNQAEILADNAEFFLKKGGYVVIA  179 (231)
T ss_pred             EEEEecC------CchHHHHHHHHHHHhcccCCeEEEE
Confidence            9876442      2456788899999999999987766

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.51  E-value=0.00076  Score=58.49  Aligned_cols=79  Identities=15%  Similarity=0.053  Sum_probs=59.7

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD  107 (258)
                      .++..++|.-||.|+++..++.. +.++|+|+|.++.+++.|++++....  .++.+++++..+.  ...+.. ...++|
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF~~l--~~~l~~~~~~~vD   94 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNFANF--FEHLDELLVTKID   94 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCHHHH--HHHHHhcCCCccc
Confidence            47789999999999999999876 34799999999999999999886542  2788888886542  222211 234678


Q ss_pred             EEEec
Q 025059          108 LVCCF  112 (258)
Q Consensus       108 ~V~~~  112 (258)
                      .|+.-
T Consensus        95 gIl~D   99 (305)
T TIGR00006        95 GILVD   99 (305)
T ss_pred             EEEEe
Confidence            87664

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.47  E-value=0.0013  Score=53.61  Aligned_cols=108  Identities=19%  Similarity=0.058  Sum_probs=76.6

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .+.+|.+||++|-|-|....++...++.+-+-++..+..++..+.......  .++....+-..+  ....+  +++.||
T Consensus        98 i~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeD--vl~~L--~d~~FD  171 (271)
T KOG1709|consen   98 ISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWED--VLNTL--PDKHFD  171 (271)
T ss_pred             HhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHh--hhccc--cccCcc
Confidence            345899999999999988888888888788899999999887766443322  155555543322  11122  577899


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      -|.---    .-+.-+++..+.+.+.++|||+|++-..
T Consensus       172 GI~yDT----y~e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  172 GIYYDT----YSELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             eeEeec----hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence            994321    0134578899999999999999988543

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.43  E-value=3.8e-05  Score=61.99  Aligned_cols=94  Identities=20%  Similarity=0.324  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      .+.++||||.|.|..+..++. -+.+|++.+.|..|+...+++      ++++ +-..+..+         .+-++|+|+
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p-~feevyATElS~tMr~rL~kk------~ynV-l~~~ew~~---------t~~k~dli~  174 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAP-TFEEVYATELSWTMRDRLKKK------NYNV-LTEIEWLQ---------TDVKLDLIL  174 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcc-hHHHHHHHHhhHHHHHHHhhc------CCce-eeehhhhh---------cCceeehHH
Confidence            457999999999987776633 345799999999998766543      1122 11112111         345799999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccC-CcEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKP-GGYFLGI  145 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~Lkp-gG~~i~~  145 (258)
                      |...+.-.+.    .-.+++.++.+|+| +|.+|+.
T Consensus       175 clNlLDRc~~----p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  175 CLNLLDRCFD----PFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             HHHHHHhhcC----hHHHHHHHHHHhccCCCcEEEE
Confidence            9886654444    66789999999999 8888876

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.36  E-value=0.0005  Score=54.80  Aligned_cols=101  Identities=21%  Similarity=0.193  Sum_probs=72.1

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      ...+.|+|+|+|.++.-.+.. ..+|++++.+|.-...|.+++.-.+.. ++..+.+|+.+-.+        ...|+|+|
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~f--------e~ADvvic  102 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYDF--------ENADVVIC  102 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEecccccccc--------cccceeHH
Confidence            378999999999876655444 569999999999999999886444322 78999999977554        57899988


Q ss_pred             ccccccccCCHHHHHHHHHHHHhcccCCcEEEE
Q 025059          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (258)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~  144 (258)
                      -. +.-++. .+.....+..+...||.++.++=
T Consensus       103 Em-lDTaLi-~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         103 EM-LDTALI-EEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             HH-hhHHhh-cccccHHHHHHHHHhhcCCcccc
Confidence            54 221122 23334556666668888887763

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.31  E-value=0.0085  Score=49.12  Aligned_cols=112  Identities=11%  Similarity=-0.004  Sum_probs=83.2

Q ss_pred             HHHhcCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 025059           25 IKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (258)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (258)
                      +..+.+.+.++.||||-.+.+..++...+ ...+++.|+++..++.|.+.++..++..+++...+|... ++.     .+
T Consensus        10 va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~-----~~   83 (226)
T COG2384          10 VANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLE-----LE   83 (226)
T ss_pred             HHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccC-----cc
Confidence            34556667779999999999888888874 468999999999999999999988877678888888632 231     35


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ..+|+|+...+-      -.....++++-...|+.=-.+++. |+.
T Consensus        84 d~~d~ivIAGMG------G~lI~~ILee~~~~l~~~~rlILQ-Pn~  122 (226)
T COG2384          84 DEIDVIVIAGMG------GTLIREILEEGKEKLKGVERLILQ-PNI  122 (226)
T ss_pred             CCcCEEEEeCCc------HHHHHHHHHHhhhhhcCcceEEEC-CCC
Confidence            589999876632      334667777777777754456555 443

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.29  E-value=0.014  Score=50.06  Aligned_cols=59  Identities=20%  Similarity=0.160  Sum_probs=48.4

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCC--CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCC
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP   90 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~   90 (258)
                      .|+...+|.--|.|+.+..++....  ++++|+|-++.+++.|++++.....  ++.+++.+.
T Consensus        22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~--r~~~v~~~F   82 (314)
T COG0275          22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDG--RVTLVHGNF   82 (314)
T ss_pred             CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCC--cEEEEeCcH
Confidence            4788999999999999999998853  6899999999999999999866431  556665553

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=97.24  E-value=0.017  Score=48.28  Aligned_cols=107  Identities=18%  Similarity=0.155  Sum_probs=71.9

Q ss_pred             CCEEEEEcCCCCccHHHHHHc-----CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           32 YVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      +...+|+|+|+..-+.-+.+.     ...+++.+|+|...+....+.+.....+..+.-+++|... ++.+    .++.-
T Consensus        79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~-~La~----~~~~~  153 (321)
T COG4301          79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYEL-ALAE----LPRGG  153 (321)
T ss_pred             cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHH-HHhc----ccCCC
Confidence            578999999998666555543     2348999999999998766655555444466667777421 1211    11222


Q ss_pred             eEE--EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLV--CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V--~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      -.+  .....+.+  -+......++..+...|+||-+|++-
T Consensus       154 ~Rl~~flGStlGN--~tp~e~~~Fl~~l~~a~~pGd~~LlG  192 (321)
T COG4301         154 RRLFVFLGSTLGN--LTPGECAVFLTQLRGALRPGDYFLLG  192 (321)
T ss_pred             eEEEEEecccccC--CChHHHHHHHHHHHhcCCCcceEEEe
Confidence            222  22334554  45778899999999999999998876

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.23  E-value=0.0085  Score=48.95  Aligned_cols=114  Identities=13%  Similarity=0.125  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHh-------------------------------
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWEN-------------------------------   76 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~-------------------------------   76 (258)
                      .+.++.|-|||.|.++--+.-.   ....++|.|+++.+++.|++++.-                               
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            4578999999999877544222   456899999999999999885421                               


Q ss_pred             ----------cCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEecccccc--ccC---CHHHHHHHHHHHHhcccCCcE
Q 025059           77 ----------QRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQM--CFE---TEERARRLLQNVSSLLKPGGY  141 (258)
Q Consensus        77 ----------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~--~~~---~~~~~~~~l~~i~~~LkpgG~  141 (258)
                                .+-.......++|+++....... +.....|+|+.-.....  .+.   +..-...++..++.+|.++++
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~-~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV  209 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVL-DAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV  209 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHH-HTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhh-ccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence                      00122457888998774433222 23455799976432111  112   234578999999999965665


Q ss_pred             EEEE
Q 025059          142 FLGI  145 (258)
Q Consensus       142 ~i~~  145 (258)
                      +.++
T Consensus       210 V~v~  213 (246)
T PF11599_consen  210 VAVS  213 (246)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5553

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.23  E-value=0.0011  Score=55.52  Aligned_cols=80  Identities=19%  Similarity=0.149  Sum_probs=57.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      +++..+|+|||||.=-++..|.... ...|+|+||+..+++....-....+.  .......|+...+       +....|
T Consensus       103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~-------~~~~~D  173 (251)
T PF07091_consen  103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDP-------PKEPAD  173 (251)
T ss_dssp             S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-------TTSEES
T ss_pred             CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccC-------CCCCcc
Confidence            3457899999999988888887663 34999999999999998877666543  5667777876554       467899


Q ss_pred             EEEecccccc
Q 025059          108 LVCCFQHLQM  117 (258)
Q Consensus       108 ~V~~~~~l~~  117 (258)
                      +....-.++.
T Consensus       174 laLllK~lp~  183 (251)
T PF07091_consen  174 LALLLKTLPC  183 (251)
T ss_dssp             EEEEET-HHH
T ss_pred             hhhHHHHHHH
Confidence            9998887775

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.21  E-value=0.00064  Score=61.96  Aligned_cols=60  Identities=17%  Similarity=0.243  Sum_probs=50.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP   90 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~   90 (258)
                      ++++..+||++||||.....+++ +...|+|+++++.+++.|+.+...++.. +++|+++-+
T Consensus       381 l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqa  440 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQA  440 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCcc-ceeeeecch
Confidence            34678899999999988777754 5669999999999999999998877654 899999944

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.18  E-value=0.0034  Score=58.38  Aligned_cols=118  Identities=19%  Similarity=0.195  Sum_probs=79.3

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc----C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA----L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      +..+|+|.+||+|+++......    . ...++|.++++.....|+-.+--++....+....+|....+.... ....+.
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~-~~~~~~  264 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDD-KDDKGK  264 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccc-cCCccc
Confidence            6679999999999988777554    1 246999999999999999888766543234556666544333110 113467


Q ss_pred             eeEEEeccccc---c-----------------ccCCHHHH-HHHHHHHHhcccCCcEEEEEEcCc
Q 025059          106 ADLVCCFQHLQ---M-----------------CFETEERA-RRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       106 fD~V~~~~~l~---~-----------------~~~~~~~~-~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ||.|+++-...   +                 .+.+.... ..+++++...|+|||..-+..|++
T Consensus       265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g  329 (489)
T COG0286         265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG  329 (489)
T ss_pred             eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence            99887753221   0                 11222223 789999999999999766666665

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.90  E-value=0.02  Score=50.45  Aligned_cols=112  Identities=13%  Similarity=0.033  Sum_probs=77.1

Q ss_pred             CCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHH--Hhc---C-CCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           32 YVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTW--ENQ---R-KNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~--~~~---~-~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      -.+||=+|.|.|--+..+.+.+ ..+++-+|.+|+|++.++...  ...   . .+.+++.+..|+.+  .   ++...+
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~--w---lr~a~~  364 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ--W---LRTAAD  364 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH--H---HHhhcc
Confidence            3679999999999888888876 789999999999999998432  211   1 13478888888743  2   222456


Q ss_pred             ceeEEEeccccccccC-CHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          105 QADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      .||.|+.-.-=..... ..---..+-.-+++.|+++|.+++..-+
T Consensus       365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags  409 (508)
T COG4262         365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS  409 (508)
T ss_pred             cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence            9999987542111000 0011256777889999999999988433

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=96.88  E-value=0.013  Score=52.38  Aligned_cols=113  Identities=14%  Similarity=0.023  Sum_probs=77.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      |+.+|||+|+..|+=+...+..  ..+.+++.|.+..-+...+..+...+.. +......|....+-  ..  -.++||-
T Consensus       241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~--~~--~~~~fDR  315 (460)
T KOG1122|consen  241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPE--KE--FPGSFDR  315 (460)
T ss_pred             CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccc--cc--cCcccce
Confidence            7899999999999988777654  5568999999999999988888776532 45566666643221  11  1238999


Q ss_pred             EEecccccc--------c---cCCH-------HHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQM--------C---FETE-------ERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~--------~---~~~~-------~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |..-.....        +   ..+.       .-.++++.....++++||+++-++++
T Consensus       316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS  373 (460)
T KOG1122|consen  316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS  373 (460)
T ss_pred             eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence            864321110        0   1111       12477888899999999999987554

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.85  E-value=0.011  Score=53.08  Aligned_cols=109  Identities=13%  Similarity=0.167  Sum_probs=74.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCc-eeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .+.+|||.=+|+|.=+..++..  +...|+.-|+|+++++..+++.+.++... ++...+.|+..  +   +......||
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~--l---l~~~~~~fD  123 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANV--L---LYSRQERFD  123 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHH--H---HCHSTT-EE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHH--H---hhhccccCC
Confidence            3579999999999777777666  45689999999999999999988777655 57888888632  1   112468999


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~  152 (258)
                      +|=.        ++-.....++..+.+.++.||.+.+|..|...+
T Consensus       124 ~IDl--------DPfGSp~pfldsA~~~v~~gGll~vTaTD~a~L  160 (377)
T PF02005_consen  124 VIDL--------DPFGSPAPFLDSALQAVKDGGLLCVTATDTAVL  160 (377)
T ss_dssp             EEEE----------SS--HHHHHHHHHHEEEEEEEEEEE--HHHH
T ss_pred             EEEe--------CCCCCccHhHHHHHHHhhcCCEEEEeccccccc
Confidence            9943        122234567888888999999999997775433

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.81  E-value=0.00047  Score=53.24  Aligned_cols=58  Identities=24%  Similarity=0.327  Sum_probs=50.1

Q ss_pred             cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHH
Q 025059          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVE  161 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~  161 (258)
                      .+++.|+|.+..++.+  .+.+....+++++++.|||||++-+..|+...+...|...++
T Consensus        44 ~dns~d~iyaeHvlEH--lt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vq  101 (185)
T COG4627          44 EDNSVDAIYAEHVLEH--LTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQ  101 (185)
T ss_pred             CCcchHHHHHHHHHHH--HhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhh
Confidence            5789999999888766  355778899999999999999999999999999988886543

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.78  E-value=0.017  Score=51.08  Aligned_cols=114  Identities=12%  Similarity=0.084  Sum_probs=63.2

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc----------CC-------CeEEEEecChhHHHHHHHHHHhc------CCCceeEE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA----------LI-------ANYIGIDVATSGIGEARDTWENQ------RKNFIAEF   85 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~----------~~-------~~v~gvD~s~~~l~~a~~~~~~~------~~~~~~~~   85 (258)
                      .+...+|+|+||..|.++..+...          ..       -+++.-|.-.+=....-+.+...      ....-+.-
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g   93 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG   93 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence            345679999999999998777442          11       16777776554333222222111      11111222


Q ss_pred             EEcCCCCCchhhhhhhcCCceeEEEeccccccccC------C-----------------------------HHHHHHHHH
Q 025059           86 FEADPCAENFETQMQEKANQADLVCCFQHLQMCFE------T-----------------------------EERARRLLQ  130 (258)
Q Consensus        86 ~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~------~-----------------------------~~~~~~~l~  130 (258)
                      +.+...+.-+      |.++.|++.+..++||+=.      .                             ..++..+|+
T Consensus        94 vpgSFy~rLf------P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~  167 (334)
T PF03492_consen   94 VPGSFYGRLF------PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLK  167 (334)
T ss_dssp             EES-TTS--S-------TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             cCchhhhccC------CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3343322222      6899999999999998611      0                             145677888


Q ss_pred             HHHhcccCCcEEEEEEcC
Q 025059          131 NVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       131 ~i~~~LkpgG~~i~~~~~  148 (258)
                      .=++-|+|||.++++.+.
T Consensus       168 ~Ra~ELv~GG~mvl~~~g  185 (334)
T PF03492_consen  168 ARAEELVPGGRMVLTFLG  185 (334)
T ss_dssp             HHHHHEEEEEEEEEEEEE
T ss_pred             HhhheeccCcEEEEEEee
Confidence            888999999999999543

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.63  E-value=0.02  Score=48.96  Aligned_cols=122  Identities=13%  Similarity=0.049  Sum_probs=84.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcC---CCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ...+||=+|-|.|+.+....++ ...++.-+|+....++..++-.+...   .+.++.+.-+|...  +.+..  +.++|
T Consensus       121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~--fl~~~--~~~~~  196 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL--FLEDL--KENPF  196 (337)
T ss_pred             CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH--HHHHh--ccCCc
Confidence            4589999999999998877776 45689999999999998888665432   13367888887632  32232  47899


Q ss_pred             eEEEeccccccccCC-HHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHH
Q 025059          107 DLVCCFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (258)
Q Consensus       107 D~V~~~~~l~~~~~~-~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~  158 (258)
                      |+|+.-..=.- -.. ..-.+.+++.+.+.||+||+++... ++-++...|.+
T Consensus       197 dVii~dssdpv-gpa~~lf~~~~~~~v~~aLk~dgv~~~q~-ec~wl~~~~i~  247 (337)
T KOG1562|consen  197 DVIITDSSDPV-GPACALFQKPYFGLVLDALKGDGVVCTQG-ECMWLHLDYIK  247 (337)
T ss_pred             eEEEEecCCcc-chHHHHHHHHHHHHHHHhhCCCcEEEEec-ceehHHHHHHH
Confidence            99976432110 000 1124778899999999999998775 55455555544

>PRK11524 putative methyltransferase; Provisional

Probab=96.59  E-value=0.0077  Score=52.01  Aligned_cols=56  Identities=18%  Similarity=0.142  Sum_probs=47.2

Q ss_pred             HHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHh
Q 025059           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN   76 (258)
Q Consensus        20 ~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~   76 (258)
                      +-..+|..+..+|..|||.-||+|..+....+.+- +++|+|++++.++.|++|+..
T Consensus       197 L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        197 LLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence            34566777788999999999999987777766555 899999999999999999864

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.53  E-value=0.018  Score=47.94  Aligned_cols=108  Identities=15%  Similarity=0.065  Sum_probs=71.3

Q ss_pred             HhcCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           27 IYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      .+++|+.+||-||++.|.......+-  +-.-|++++.|+.+=...-.-.+...   ++.-+.-|+....-...   .-.
T Consensus       152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRt---NiiPIiEDArhP~KYRm---lVg  225 (317)
T KOG1596|consen  152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRT---NIIPIIEDARHPAKYRM---LVG  225 (317)
T ss_pred             eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccC---CceeeeccCCCchheee---eee
Confidence            44569999999999999988888765  34579999999866443322222211   55556667655321111   123


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ..|+|.+--      ....+.+-+.-|..-.||+||.|++++
T Consensus       226 mVDvIFaDv------aqpdq~RivaLNA~~FLk~gGhfvisi  261 (317)
T KOG1596|consen  226 MVDVIFADV------AQPDQARIVALNAQYFLKNGGHFVISI  261 (317)
T ss_pred             eEEEEeccC------CCchhhhhhhhhhhhhhccCCeEEEEE
Confidence            567775432      234566777778999999999999983

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.49  E-value=0.012  Score=47.70  Aligned_cols=46  Identities=15%  Similarity=0.184  Sum_probs=38.4

Q ss_pred             CCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc
Q 025059           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ   77 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~   77 (258)
                      .-.+.|||||-|+++..++.. +...+.|.+|--..-++.++|+...
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~AL  107 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQAL  107 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHH
Confidence            356999999999999999777 4457889999988888888888654

>PRK10742 putative methyltransferase; Provisional

Probab=96.45  E-value=0.026  Score=47.49  Aligned_cols=78  Identities=10%  Similarity=-0.023  Sum_probs=56.9

Q ss_pred             CCCC--EEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc------C--CCceeEEEEcCCCCCchhhhh
Q 025059           30 HPYV--TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ------R--KNFIAEFFEADPCAENFETQM   99 (258)
Q Consensus        30 ~~~~--~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~------~--~~~~~~~~~~d~~~~~~~~~~   99 (258)
                      +++.  +|||+-+|.|.++..++..+. +|+++|-++.+....+..+...      .  ...+++++++|...  +   +
T Consensus        85 k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~--~---L  158 (250)
T PRK10742         85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT--A---L  158 (250)
T ss_pred             CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH--H---H
Confidence            4666  899999999999999998887 5999999999887777666542      1  11267888888632  2   1


Q ss_pred             hhcCCceeEEEecc
Q 025059          100 QEKANQADLVCCFQ  113 (258)
Q Consensus       100 ~~~~~~fD~V~~~~  113 (258)
                      .....+||+|..--
T Consensus       159 ~~~~~~fDVVYlDP  172 (250)
T PRK10742        159 TDITPRPQVVYLDP  172 (250)
T ss_pred             hhCCCCCcEEEECC
Confidence            11234799997654

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.36  E-value=0.011  Score=48.68  Aligned_cols=53  Identities=26%  Similarity=0.263  Sum_probs=40.7

Q ss_pred             HHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHH
Q 025059           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD   72 (258)
Q Consensus        19 ~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~   72 (258)
                      -+-..+|..+..++..|||.-||+|..+......+- +.+|+|+++...+.|++
T Consensus       179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHhhhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence            344566777888999999999999988777766665 89999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK13699 putative methylase; Provisional

Probab=96.32  E-value=0.016  Score=48.34  Aligned_cols=56  Identities=21%  Similarity=0.304  Sum_probs=47.0

Q ss_pred             HHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc
Q 025059           21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (258)
Q Consensus        21 k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~   77 (258)
                      -..+|+.+..+|..|||.-||+|..+......+. +++|+|+++...+.|.+|+...
T Consensus       153 ~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        153 LQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence            3456677778999999999999988877766655 8999999999999999998653

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.26  E-value=0.016  Score=50.68  Aligned_cols=122  Identities=15%  Similarity=0.147  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ...+|||+|.|.|.-+.+...--  ...++-++.|+..-+......+.... .....-..|+....+      +-+.-|.
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl------~lp~ad~  185 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRL------SLPAADL  185 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhcc------CCCccce
Confidence            34679999999996555544332  22455666665544433322221110 011222222222111      2233444


Q ss_pred             EEecccccccc--CCHHHHHHHHHHHHhcccCCcEEEEE---EcCchHHHHHHHHh
Q 025059          109 VCCFQHLQMCF--ETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKN  159 (258)
Q Consensus       109 V~~~~~l~~~~--~~~~~~~~~l~~i~~~LkpgG~~i~~---~~~~~~~~~~~~~~  159 (258)
                      +++..+++-.+  ..+..+...++.+-.++.|||.+++.   +|.+-.+..+.++.
T Consensus       186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~  241 (484)
T COG5459         186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQI  241 (484)
T ss_pred             eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHH
Confidence            44444444322  22334556889999999999999999   44454555555544

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.26  E-value=0.013  Score=48.43  Aligned_cols=106  Identities=20%  Similarity=0.210  Sum_probs=71.6

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCC----------CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh-hh
Q 025059           32 YVTVCDLYCGAGVDVDKWETALI----------ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-MQ  100 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~----------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~  100 (258)
                      -.+|+|||...|.+++-+.+..+          ..++++|+.+.+         ..   ..+.-+++|+.+..-.+. +.
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma---------PI---~GV~qlq~DIT~~stae~Ii~  109 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA---------PI---EGVIQLQGDITSASTAEAIIE  109 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC---------cc---CceEEeecccCCHhHHHHHHH
Confidence            36899999999999988876511          139999987544         11   156778999987653322 21


Q ss_pred             h-cCCceeEEEeccc-----cccccC--CHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          101 E-KANQADLVCCFQH-----LQMCFE--TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       101 ~-~~~~fD~V~~~~~-----l~~~~~--~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      . ..++.|+|+|-.+     +|.+-+  ..+-+..+|.-...+|+|||.|+.-+..+
T Consensus       110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg  166 (294)
T KOG1099|consen  110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG  166 (294)
T ss_pred             HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence            1 3468999999764     343111  12345677788889999999999876555

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.25  E-value=0.013  Score=50.84  Aligned_cols=79  Identities=16%  Similarity=0.170  Sum_probs=53.5

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCCc
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~  105 (258)
                      ..++...+|.--|.|+.+..++.. +.++++|+|.++.+++.|++++...  ..++.+++++..+  +...+..  ...+
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~--l~~~l~~~~~~~~   93 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSN--LDEYLKELNGINK   93 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGG--HHHHHHHTTTTS-
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHH--HHHHHHHccCCCc
Confidence            357889999999999999999986 4479999999999999999888754  2278888888644  2222211  2347


Q ss_pred             eeEEEe
Q 025059          106 ADLVCC  111 (258)
Q Consensus       106 fD~V~~  111 (258)
                      +|.|+.
T Consensus        94 ~dgiL~   99 (310)
T PF01795_consen   94 VDGILF   99 (310)
T ss_dssp             EEEEEE
T ss_pred             cCEEEE
Confidence            777765

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=96.13  E-value=0.1  Score=46.88  Aligned_cols=47  Identities=15%  Similarity=0.138  Sum_probs=35.8

Q ss_pred             cCCceeEEEeccccccccCCH----------------------------------HHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          102 KANQADLVCCFQHLQMCFETE----------------------------------ERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~----------------------------------~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |.++.+++.+..++||.=.-.                                  .+...+|+.-++-|.|||.++++++
T Consensus       159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~  238 (386)
T PLN02668        159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL  238 (386)
T ss_pred             CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEe
Confidence            678999999999999852100                                  2356677778888999999999965


Q ss_pred             C
Q 025059          148 D  148 (258)
Q Consensus       148 ~  148 (258)
                      .
T Consensus       239 G  239 (386)
T PLN02668        239 G  239 (386)
T ss_pred             c
Confidence            4

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.13  E-value=0.58  Score=39.19  Aligned_cols=104  Identities=13%  Similarity=-0.088  Sum_probs=62.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      .|.+||=+|=+--..+...+.....+++.+|+++..++.-++..+..+.  +++....|+.+. +-+.   -.++||+++
T Consensus        44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--~i~~~~~DlR~~-LP~~---~~~~fD~f~  117 (243)
T PF01861_consen   44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--PIEAVHYDLRDP-LPEE---LRGKFDVFF  117 (243)
T ss_dssp             TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----TT---TSS-BSEEE
T ss_pred             cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--ceEEEEeccccc-CCHH---HhcCCCEEE
Confidence            6899999984433211111223556999999999999999888877755  688899998653 2111   258999997


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCc-EEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGI  145 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG-~~i~~  145 (258)
                      +--  .   .+.+.+..++......|+..| ..++.
T Consensus       118 TDP--P---yT~~G~~LFlsRgi~~Lk~~g~~gy~~  148 (243)
T PF01861_consen  118 TDP--P---YTPEGLKLFLSRGIEALKGEGCAGYFG  148 (243)
T ss_dssp             E--------SSHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred             eCC--C---CCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence            743  3   367889999999999999877 44444

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.05  E-value=0.016  Score=49.73  Aligned_cols=71  Identities=18%  Similarity=0.095  Sum_probs=53.1

Q ss_pred             EEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 025059           34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (258)
Q Consensus        34 ~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~  113 (258)
                      +|+|+.||.|++...+...+...+.++|+++.+++..+.+++.       ..++.|+.+.....    ....+|+++...
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~----~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKD----FIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhh----cCCCCCEEEeCC
Confidence            6999999999999988888887889999999999887776642       25667776543211    035699998766


Q ss_pred             cc
Q 025059          114 HL  115 (258)
Q Consensus       114 ~l  115 (258)
                      ..
T Consensus        71 PC   72 (275)
T cd00315          71 PC   72 (275)
T ss_pred             CC
Confidence            33

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.00  E-value=0.093  Score=40.46  Aligned_cols=100  Identities=15%  Similarity=0.067  Sum_probs=72.2

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      +..+.+|||+|.|......++.+...-+|+++++=.+.+++-+.-..+......|...|+-..++        ..|..|+
T Consensus        72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl--------~dy~~vv  143 (199)
T KOG4058|consen   72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL--------RDYRNVV  143 (199)
T ss_pred             CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc--------cccceEE
Confidence            45689999999999999998888668999999999998888776555555577888888755444        2344444


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ++.       .++.+..+-..+..-+..|-.++..
T Consensus       144 iFg-------aes~m~dLe~KL~~E~p~nt~vvac  171 (199)
T KOG4058|consen  144 IFG-------AESVMPDLEDKLRTELPANTRVVAC  171 (199)
T ss_pred             Eee-------hHHHHhhhHHHHHhhCcCCCeEEEE
Confidence            333       2344555566677777888877766

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.99  E-value=0.046  Score=46.03  Aligned_cols=111  Identities=15%  Similarity=-0.025  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHH----HHhcCCCceeEEEEcCCCCCchhhhhhhcCCc-
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDT----WENQRKNFIAEFFEADPCAENFETQMQEKANQ-  105 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-  105 (258)
                      .+.+||++|+|+|-....++.....+|+..|+..........+    ......+..+.....+-.+..-....   ... 
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~---~~~~  162 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR---LPNP  162 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc---cCCc
Confidence            3567999999999666666665666899999765443322221    11122222344444443332222222   122 


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +|+|++.-++..    .+....++..++..|-.+|.+++.++-
T Consensus       163 ~DlilasDvvy~----~~~~e~Lv~tla~ll~~~~~i~l~~~l  201 (248)
T KOG2793|consen  163 FDLILASDVVYE----EESFEGLVKTLAFLLAKDGTIFLAYPL  201 (248)
T ss_pred             ccEEEEeeeeec----CCcchhHHHHHHHHHhcCCeEEEEEec
Confidence            999998875543    555667777788888888866665443

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.92  E-value=0.066  Score=47.17  Aligned_cols=97  Identities=16%  Similarity=0.148  Sum_probs=65.7

Q ss_pred             HHhcCCCCEEEEEcCC-CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           26 KIYSHPYVTVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG-~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      ...+.|+.+|+=.|+| -|..+.++++.-..+|+++|.|++-++.|++--..       .++... ..... +.+   .+
T Consensus       161 ~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~-~~~~~-~~~---~~  228 (339)
T COG1064         161 KANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSS-DSDAL-EAV---KE  228 (339)
T ss_pred             hcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcC-Cchhh-HHh---Hh
Confidence            3445689999999988 34666777775336999999999999998766322       233322 11112 111   23


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .||+|+..-.           ...+....+.|++||.+++.
T Consensus       229 ~~d~ii~tv~-----------~~~~~~~l~~l~~~G~~v~v  258 (339)
T COG1064         229 IADAIIDTVG-----------PATLEPSLKALRRGGTLVLV  258 (339)
T ss_pred             hCcEEEECCC-----------hhhHHHHHHHHhcCCEEEEE
Confidence            4999977553           24567778899999999887

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=95.87  E-value=0.1  Score=46.18  Aligned_cols=123  Identities=15%  Similarity=0.019  Sum_probs=71.8

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc---C--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh---hhhh
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA---L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE---TQMQ  100 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~---~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~  100 (258)
                      ++|+.+|||+|+..|+=+.++...   .  .+.+++-|.++.-+........... .........|+...+-.   ..-.
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~~~  231 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDGND  231 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccCch
Confidence            458999999999999988777665   2  2379999999876666555442211 11222233332211100   0001


Q ss_pred             hcCCceeEEEeccccc---------cccCC-H---------HHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059          101 EKANQADLVCCFQHLQ---------MCFET-E---------ERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (258)
Q Consensus       101 ~~~~~fD~V~~~~~l~---------~~~~~-~---------~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~  152 (258)
                      .....||-|.|---..         ..+.. +         .-.-.++.+-.++||+||.++-++.+-..+
T Consensus       232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi  302 (375)
T KOG2198|consen  232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI  302 (375)
T ss_pred             hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence            1345788887632110         00010 1         112468889999999999999997776433

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.80  E-value=0.03  Score=46.35  Aligned_cols=86  Identities=9%  Similarity=0.096  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc-CCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ++.++||||.|.-..=-.+-.+ ...+.+|.|+++.+++.|+.....+ ++...+++....-.+. +.+.....++.||.
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~-if~giig~nE~yd~  156 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDA-IFNGIIGKNERYDA  156 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccc-cccccccccceeee
Confidence            5678999988864321111111 1238999999999999999988765 3332344433322111 22222224789999


Q ss_pred             EEecccccc
Q 025059          109 VCCFQHLQM  117 (258)
Q Consensus       109 V~~~~~l~~  117 (258)
                      ++|+-.+|.
T Consensus       157 tlCNPPFh~  165 (292)
T COG3129         157 TLCNPPFHD  165 (292)
T ss_pred             EecCCCcch
Confidence            999988875

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=95.56  E-value=0.0065  Score=44.30  Aligned_cols=41  Identities=27%  Similarity=0.481  Sum_probs=31.6

Q ss_pred             ceeEEEeccccccc--cCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMC--FETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~--~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +||+|+|..+.-++  -.+.+.+..+++.+.+.|+|||.||+.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            48999998765432  123567899999999999999999987

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=95.54  E-value=1.3  Score=37.68  Aligned_cols=111  Identities=14%  Similarity=0.048  Sum_probs=70.7

Q ss_pred             CEEEEEcCCCCccHHHHHHc-CC-CeEEEEecChhHHHHHHHHHHhcC--CCceeEEEEcCCCCCchhhhhhhc---CCc
Q 025059           33 VTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK---ANQ  105 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~---~~~  105 (258)
                      ..|+.||||-  ++..+.-. +. ..++-+|. ++.++.-++.+...+  ...+..++.+|+. ....+.+...   ...
T Consensus        83 ~qvV~LGaGl--DTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~  158 (260)
T TIGR00027        83 RQVVILGAGL--DTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTA  158 (260)
T ss_pred             cEEEEeCCcc--ccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCC
Confidence            4699999986  44444322 22 24555554 345555555565421  2236788999987 4433333211   234


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .-++++-.++.|  .+.+....+++.+.+...||+.+++...+.
T Consensus       159 ptl~i~EGvl~Y--L~~~~v~~ll~~i~~~~~~gs~l~~d~~~~  200 (260)
T TIGR00027       159 PTAWLWEGLLMY--LTEEAVDALLAFIAELSAPGSRLAFDYVRP  200 (260)
T ss_pred             Ceeeeecchhhc--CCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence            556777777777  568889999999999998999999986553

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.45  E-value=0.0058  Score=55.63  Aligned_cols=109  Identities=13%  Similarity=0.143  Sum_probs=76.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ++.+|||.=|++|..+..++..  +..++++-|.++++++.-+.+.+-+.....++-.+.|+...-+.  -+.....||+
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~--~~~~~~~FDv  186 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE--HPMVAKFFDV  186 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh--ccccccccce
Confidence            4678999999999999999887  56789999999999998888776654333344555554321110  0112478999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |-.        ++-.....+|....+.++.||.+.+|..|.
T Consensus       187 IDL--------DPyGs~s~FLDsAvqav~~gGLL~vT~TD~  219 (525)
T KOG1253|consen  187 IDL--------DPYGSPSPFLDSAVQAVRDGGLLCVTCTDM  219 (525)
T ss_pred             Eec--------CCCCCccHHHHHHHHHhhcCCEEEEEecch
Confidence            932        222234567777888889999999996654

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.44  E-value=0.016  Score=53.15  Aligned_cols=108  Identities=17%  Similarity=0.202  Sum_probs=64.2

Q ss_pred             CEEEEEcCCCCccHHHHHHcCCC--eEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC-CchhhhhhhcCCceeEE
Q 025059           33 VTVCDLYCGAGVDVDKWETALIA--NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQADLV  109 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~fD~V  109 (258)
                      .+|+|+..|.|+++.++...+..  .|+-+ ..++-+..--.|    ++   + =...|.++ .+.      -+.+||+|
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR----GL---I-G~yhDWCE~fsT------YPRTYDLl  431 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR----GL---I-GVYHDWCEAFST------YPRTYDLL  431 (506)
T ss_pred             eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----cc---c-hhccchhhccCC------CCcchhhe
Confidence            57999999999999999766532  22222 122222222111    10   1 11122221 122      47899999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHH
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~  158 (258)
                      .+...+.. ..+.-.+..++-+|-|+|+|||.+|+.  +...+..+..+
T Consensus       432 HA~~lfs~-~~~rC~~~~illEmDRILRP~G~~iiR--D~~~vl~~v~~  477 (506)
T PF03141_consen  432 HADGLFSL-YKDRCEMEDILLEMDRILRPGGWVIIR--DTVDVLEKVKK  477 (506)
T ss_pred             ehhhhhhh-hcccccHHHHHHHhHhhcCCCceEEEe--ccHHHHHHHHH
Confidence            88764432 233446789999999999999999886  44444444444

; GO: 0008168 methyltransferase activity

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.33  E-value=0.071  Score=47.11  Aligned_cols=125  Identities=12%  Similarity=0.118  Sum_probs=78.3

Q ss_pred             hHHhHHHHHHHHHHHHhcCC-CCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcC
Q 025059           12 THHRLYEFAKTALIKIYSHP-YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEAD   89 (258)
Q Consensus        12 ~~~~~~~~~k~~li~~~~~~-~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d   89 (258)
                      |..+++.=+.-.+++.+... ..+|||.=+|+|.=...++.. +..+++.-|+|+.+++..+++...+. +.+...+..|
T Consensus        32 P~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-~~~~~v~n~D  110 (380)
T COG1867          32 PAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-GEDAEVINKD  110 (380)
T ss_pred             chhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-cccceeecch
Confidence            33344433333344444432 579999999999766666555 34489999999999999999887662 1144455555


Q ss_pred             CCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059           90 PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus        90 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      +..     .+......||+|=.-        +-...--++....+.++.||++-+|..|..
T Consensus       111 AN~-----lm~~~~~~fd~IDiD--------PFGSPaPFlDaA~~s~~~~G~l~vTATD~a  158 (380)
T COG1867         111 ANA-----LLHELHRAFDVIDID--------PFGSPAPFLDAALRSVRRGGLLCVTATDTA  158 (380)
T ss_pred             HHH-----HHHhcCCCccEEecC--------CCCCCchHHHHHHHHhhcCCEEEEEecccc
Confidence            422     122234789999331        111123456666667778999999966643

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.26  E-value=0.057  Score=49.76  Aligned_cols=118  Identities=19%  Similarity=0.151  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHhcC----CCCEEEEEcCCCCccHHHHHHc-----CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEc
Q 025059           18 EFAKTALIKIYSH----PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA   88 (258)
Q Consensus        18 ~~~k~~li~~~~~----~~~~VLDlGcG~G~~~~~~~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~   88 (258)
                      .=|..+|.++...    ....|+=+|.|.|-+..+..+.     ..-++++++-+|+++...+.+ .-...+.+++++..
T Consensus       350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~~Vtii~~  428 (649)
T KOG0822|consen  350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDNRVTIISS  428 (649)
T ss_pred             HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcCeeEEEec
Confidence            3344555555322    1356889999999888766553     223799999999999877663 22233448999999


Q ss_pred             CCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEE
Q 025059           89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (258)
Q Consensus        89 d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~  144 (258)
                      |+..-+.      +..+.|++++-. + ..|..-+--.+.|.-+.+.|||+|+.|=
T Consensus       429 DMR~w~a------p~eq~DI~VSEL-L-GSFGDNELSPECLDG~q~fLkpdgIsIP  476 (649)
T KOG0822|consen  429 DMRKWNA------PREQADIIVSEL-L-GSFGDNELSPECLDGAQKFLKPDGISIP  476 (649)
T ss_pred             cccccCC------chhhccchHHHh-h-ccccCccCCHHHHHHHHhhcCCCceEcc
Confidence            9976442      357899987632 2 2344455567889999999999997753

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=95.20  E-value=0.25  Score=43.70  Aligned_cols=60  Identities=10%  Similarity=0.041  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc---------CCCeEEEEecChhHHHHHHHHHHhc
Q 025059           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA---------LIANYIGIDVATSGIGEARDTWENQ   77 (258)
Q Consensus        18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~---------~~~~v~gvD~s~~~l~~a~~~~~~~   77 (258)
                      .|+...+-+.-.++...++|||.|+|.++..+++.         ...++.-+++|++..+.-+++++..
T Consensus        64 ~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          64 EQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            66666665555556788999999999999888664         2458999999999999888877654

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=95.18  E-value=0.047  Score=44.02  Aligned_cols=105  Identities=23%  Similarity=0.151  Sum_probs=58.6

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHH----------HHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGI----------GEARDTWENQRKNFIAEFFEADPCAENFE   96 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l----------~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (258)
                      ++|+.+|+|+-.|.|.++.-++..  ..+.|+++-..+...          ..+++....     +.+.+-.+.....  
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-----N~e~~~~~~~A~~--  118 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-----NVEVIGKPLVALG--  118 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-----hhhhhCCcccccC--
Confidence            458899999999999988877654  234666664433211          111111111     1111111111111  


Q ss_pred             hhhhhcCCceeEEEec---cccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           97 TQMQEKANQADLVCCF---QHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        97 ~~~~~~~~~fD~V~~~---~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                           +....|++...   ..+|.-..+......+...+.+.|||||++++.
T Consensus       119 -----~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~  165 (238)
T COG4798         119 -----APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE  165 (238)
T ss_pred             -----CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence                 23344444321   123333334566788999999999999999887

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=95.14  E-value=0.11  Score=45.05  Aligned_cols=113  Identities=18%  Similarity=0.255  Sum_probs=75.8

Q ss_pred             CEEEEEcCCCCccHHHHHHcC-------C--------------CeEEEEecCh--hHHHHHHHHHHhc------------
Q 025059           33 VTVCDLYCGAGVDVDKWETAL-------I--------------ANYIGIDVAT--SGIGEARDTWENQ------------   77 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~-------~--------------~~v~gvD~s~--~~l~~a~~~~~~~------------   77 (258)
                      .+||-||.|.|.-+..++..-       .              -.++.+||.+  ..+......+...            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            699999999987666554321       0              2799999876  3444443333222            


Q ss_pred             ----CCCceeEEEEcCCCCCchhhhhhh-cCCceeEEEeccccccccC-CHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           78 ----RKNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        78 ----~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                          ...+++.|.+.|+....-.+...- .....++|+..|.++-.|. +.....++|.++...++||..+++.
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv  241 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV  241 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence                235578999999976543221000 1236899998888764433 3567789999999999999998887

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.12  E-value=0.026  Score=40.97  Aligned_cols=32  Identities=28%  Similarity=0.336  Sum_probs=25.8

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecC
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVA   63 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s   63 (258)
                      +.....|||||+|-+..-+...++ .-.|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence            346799999999987777777777 78899964

; GO: 0008168 methyltransferase activity

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=95.06  E-value=0.051  Score=42.48  Aligned_cols=104  Identities=16%  Similarity=0.144  Sum_probs=60.0

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHH-HHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGE-ARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~-a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      +.+++=+|+..-..=......+.+++.-++.++--++. .+.++.        .+...     .+...+....++||.++
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s--------si~p~-----df~~~~~~y~~~fD~~a   68 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS--------SILPV-----DFAKNWQKYAGSFDFAA   68 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc--------cccHH-----HHHHHHHHhhccchhhh
Confidence            45677777665432233334466678888865432221 111110        11111     23333334578999999


Q ss_pred             eccccccc--------cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          111 CFQHLQMC--------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       111 ~~~~l~~~--------~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |..++.+.        ..+ ..-...+.++.++|||||.+++..|-+
T Consensus        69 s~~siEh~GLGRYGDPidp-~Gdl~~m~~i~~vLK~GG~L~l~vPvG  114 (177)
T PF03269_consen   69 SFSSIEHFGLGRYGDPIDP-IGDLRAMAKIKCVLKPGGLLFLGVPVG  114 (177)
T ss_pred             eechhccccccccCCCCCc-cccHHHHHHHHHhhccCCeEEEEeecC
Confidence            88776332        111 223567788999999999999998866

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.03  E-value=0.047  Score=49.27  Aligned_cols=56  Identities=16%  Similarity=0.031  Sum_probs=46.7

Q ss_pred             CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEc
Q 025059           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA   88 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~   88 (258)
                      ..|||||+|||-++....+.+...+++++.=..|.+.|++....++...++..+..
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk  123 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK  123 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence            35999999999888777777877999999999999999999888876656655543

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=95.01  E-value=0.017  Score=49.44  Aligned_cols=96  Identities=20%  Similarity=0.050  Sum_probs=67.8

Q ss_pred             CCCEEEEEcCCCCccHH-HHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~-~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .+..|.|+=.|-|.++. .+...+...|.++|.+|.+++..++.++.+....+...+.+|.....       +....|.|
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-------~~~~AdrV  266 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-------PRLRADRV  266 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-------ccccchhe
Confidence            46889999999999998 55566888999999999999999998887755445666777765543       46788888


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGY  141 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~  141 (258)
                      ....    .-.+++...    ...++|+|.|-
T Consensus       267 nLGL----lPSse~~W~----~A~k~Lk~egg  290 (351)
T KOG1227|consen  267 NLGL----LPSSEQGWP----TAIKALKPEGG  290 (351)
T ss_pred             eecc----ccccccchH----HHHHHhhhcCC
Confidence            5443    112233333    34456677554

>PHA01634 hypothetical protein

Probab=94.88  E-value=0.086  Score=39.59  Aligned_cols=47  Identities=4%  Similarity=-0.193  Sum_probs=42.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~   77 (258)
                      .+.+|+|||.+-|..+..++..+...|+++++++...+..++..+..
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n   74 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF   74 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence            67899999999999999999999999999999999998888766543

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=94.79  E-value=0.13  Score=42.92  Aligned_cols=75  Identities=13%  Similarity=0.083  Sum_probs=45.0

Q ss_pred             CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHH---HHHHhcCCC-----ceeEEEEcCCCCCchhhhhhhcCC
Q 025059           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR---DTWENQRKN-----FIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~---~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      .+|||.-+|-|.++.-++..|. +|++++-|+-+....+   +++......     .+++++++|..+  +..   .++.
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~--~L~---~~~~  150 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE--YLR---QPDN  150 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC--HCC---CHSS
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH--HHh---hcCC
Confidence            3899999999999998887776 8999999997755444   344332211     278999999755  211   2578


Q ss_pred             ceeEEEecc
Q 025059          105 QADLVCCFQ  113 (258)
Q Consensus       105 ~fD~V~~~~  113 (258)
                      +||+|..--
T Consensus       151 s~DVVY~DP  159 (234)
T PF04445_consen  151 SFDVVYFDP  159 (234)
T ss_dssp             --SEEEE--
T ss_pred             CCCEEEECC
Confidence            999998754

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=94.70  E-value=0.31  Score=39.32  Aligned_cols=105  Identities=14%  Similarity=0.128  Sum_probs=73.2

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc----C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCC
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA----L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KAN  104 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~  104 (258)
                      ++..|+|.|.-.|+.+..++..    + ..+++++||+-..+..+....      .++.|++++-.+..+...... +++
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~------p~i~f~egss~dpai~eqi~~~~~~  142 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV------PDILFIEGSSTDPAIAEQIRRLKNE  142 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC------CCeEEEeCCCCCHHHHHHHHHHhcC
Confidence            3478999999999988877654    2 348999999987766544331      178999999877655433221 233


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .--+.+|.-+-|.    .++..+-++....+|..|-++++.
T Consensus       143 y~kIfvilDsdHs----~~hvLAel~~~~pllsaG~Y~vVe  179 (237)
T COG3510         143 YPKIFVILDSDHS----MEHVLAELKLLAPLLSAGDYLVVE  179 (237)
T ss_pred             CCcEEEEecCCch----HHHHHHHHHHhhhHhhcCceEEEe
Confidence            3344555555553    666777888888999999998876

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.66  E-value=0.29  Score=43.59  Aligned_cols=98  Identities=16%  Similarity=0.111  Sum_probs=62.9

Q ss_pred             CCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc-CCcee
Q 025059           31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQAD  107 (258)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~fD  107 (258)
                      ++.+|+=+|||+ |.++..+++. +.++++.+|.++.-++.|++.....       .......+.......... ...+|
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-------~~~~~~~~~~~~~~~~~t~g~g~D  240 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-------VVVNPSEDDAGAEILELTGGRGAD  240 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-------EeecCccccHHHHHHHHhCCCCCC
Confidence            455999999998 4444555444 6679999999999999998765321       111111111111111112 23799


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+-.-+          ...++..+.++++|||.+++.
T Consensus       241 ~vie~~G----------~~~~~~~ai~~~r~gG~v~~v  268 (350)
T COG1063         241 VVIEAVG----------SPPALDQALEALRPGGTVVVV  268 (350)
T ss_pred             EEEECCC----------CHHHHHHHHHHhcCCCEEEEE
Confidence            9965443          234788889999999999887

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=94.56  E-value=0.09  Score=47.26  Aligned_cols=108  Identities=19%  Similarity=0.162  Sum_probs=65.6

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC-chhhhhhh--cC
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQE--KA  103 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~--~~  103 (258)
                      ..++.+||.+|||. |..+..+++. +..+++++|.+++.++.+++...       +..+.  .... .+.+.+..  ..
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~-------~~vi~--~~~~~~~~~~l~~~~~~  252 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG-------AETIN--FEEVDDVVEALRELTGG  252 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-------cEEEc--CCcchHHHHHHHHHcCC
Confidence            34788999999987 7777777666 43469999999999888876531       12221  1111 12222211  23


Q ss_pred             CceeEEEecccccc-----------ccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQM-----------CFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~-----------~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+|+|+..-.-+.           .+....+....+..+.++|+++|.++..
T Consensus       253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  305 (386)
T cd08283         253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII  305 (386)
T ss_pred             CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence            46899876432110           0111122345778888999999999877

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=94.29  E-value=0.055  Score=47.33  Aligned_cols=114  Identities=17%  Similarity=0.154  Sum_probs=78.1

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHH-------HHHHHhcCC-CceeEEEEcCCCCCchhhhhh
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEA-------RDTWENQRK-NFIAEFFEADPCAENFETQMQ  100 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a-------~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~  100 (258)
                      +.||..|+|-=.|||+++...+.-|. .++|.||+-.++...       +.++++.+. ..-+....+|....++.    
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r----  280 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR----  280 (421)
T ss_pred             cCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh----
Confidence            45899999999999999888877666 899999998888732       334444431 22356788888877775    


Q ss_pred             hcCCceeEEEecc--cc-----------------------ccccCC----HHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          101 EKANQADLVCCFQ--HL-----------------------QMCFET----EERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       101 ~~~~~fD~V~~~~--~l-----------------------~~~~~~----~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                       ....||.|+|--  ++                       |+-...    ..-...+++-.++.|..||.+++..|-
T Consensus       281 -sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~  356 (421)
T KOG2671|consen  281 -SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPT  356 (421)
T ss_pred             -hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCc
Confidence             356899999842  11                       110000    022355677778889999999888764

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=94.29  E-value=1.3  Score=39.76  Aligned_cols=127  Identities=17%  Similarity=0.192  Sum_probs=71.2

Q ss_pred             CCCEEEEEcCCCCcc----HHHHHHc--C-C-CeEEEEec----ChhHHHHHHHHHHhc--CCCceeEEEEc---CCCCC
Q 025059           31 PYVTVCDLYCGAGVD----VDKWETA--L-I-ANYIGIDV----ATSGIGEARDTWENQ--RKNFIAEFFEA---DPCAE   93 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~----~~~~~~~--~-~-~~v~gvD~----s~~~l~~a~~~~~~~--~~~~~~~~~~~---d~~~~   93 (258)
                      +..+|+|+|.|.|.-    +..++..  + + -++||++.    +...++.+.+++...  .++...+|...   +..+.
T Consensus       110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l  189 (374)
T PF03514_consen  110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL  189 (374)
T ss_pred             cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence            557899999999832    2222222  1 1 28999999    888888888887543  22334455442   22222


Q ss_pred             chhhhhhhcCCceeEEEeccccccccCCH---H-HHHHHHHHHHhcccCCcEEEEE---EcCchHHHHHHHHh
Q 025059           94 NFETQMQEKANQADLVCCFQHLQMCFETE---E-RARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKN  159 (258)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~---~-~~~~~l~~i~~~LkpgG~~i~~---~~~~~~~~~~~~~~  159 (258)
                      ... .+....+..=+|.|.+.+|++....   + ....+|+ ..+.|+|.-+++..   ..+...+..++.+.
T Consensus       190 ~~~-~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv~~E~ea~~n~~~F~~RF~ea  260 (374)
T PF03514_consen  190 DPS-MLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVVLVEQEADHNSPSFLERFREA  260 (374)
T ss_pred             CHH-HhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEEEEeecCCCCCCchHHHHHHH
Confidence            111 1211334555677788888865222   1 2344555 55578998655554   22345555666554

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.03  E-value=0.28  Score=45.84  Aligned_cols=105  Identities=19%  Similarity=0.225  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC-------------chh
Q 025059           31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-------------NFE   96 (258)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-------------~~~   96 (258)
                      ++.+|+=+|||. |..+...++.....|+++|.+++.++.+++-        ..++...|..+.             .+.
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl--------GA~~v~i~~~e~~~~~~gya~~~s~~~~  235 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM--------GAEFLELDFEEEGGSGDGYAKVMSEEFI  235 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--------CCeEEEeccccccccccchhhhcchhHH
Confidence            689999999997 4444555555333899999999998888752        233332222110             100


Q ss_pred             h----hhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059           97 T----QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus        97 ~----~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      .    .+.+.-..+|+|+.......    ......+.+++.+.+||||.++....
T Consensus       236 ~~~~~~~~~~~~gaDVVIetag~pg----~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        236 KAEMALFAEQAKEVDIIITTALIPG----KPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHHHHHHhccCCCCEEEECCCCCc----ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            0    01111246999987653321    11122335889999999999887643

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.92  E-value=0.76  Score=33.47  Aligned_cols=95  Identities=16%  Similarity=0.153  Sum_probs=61.5

Q ss_pred             CCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccc
Q 025059           40 CGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQ  116 (258)
Q Consensus        40 cG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~  116 (258)
                      ||.|..+..+++.   ....++.+|.+++.++.+++.        .+.++.+|..+.......  .-.+.|.|++..   
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a--~i~~a~~vv~~~---   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERA--GIEKADAVVILT---   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHT--TGGCESEEEEES---
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhc--CccccCEEEEcc---
Confidence            5556666666543   334899999999998877654        357899999876544333  345788877643   


Q ss_pred             cccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059          117 MCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (258)
Q Consensus       117 ~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~  151 (258)
                         . .......+....+-+.|...++....+...
T Consensus        71 ---~-~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~  101 (116)
T PF02254_consen   71 ---D-DDEENLLIALLARELNPDIRIIARVNDPEN  101 (116)
T ss_dssp             ---S-SHHHHHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred             ---C-CHHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence               2 233445555666777888888877766544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=93.85  E-value=0.11  Score=45.15  Aligned_cols=69  Identities=16%  Similarity=0.137  Sum_probs=51.6

Q ss_pred             EEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 025059           34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (258)
Q Consensus        34 ~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~  113 (258)
                      +++||-||-|++...+...+...+.++|+++.+.+.-+.++.        .....|+...... .+  +. .+|+++..+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~-~l--~~-~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPS-DL--PK-DVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHH-HH--HH-T-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccc-cc--cc-cceEEEecc
Confidence            799999999999999988888789999999998887776663        5788888765543 22  22 599998765


Q ss_pred             c
Q 025059          114 H  114 (258)
Q Consensus       114 ~  114 (258)
                      .
T Consensus        70 P   70 (335)
T PF00145_consen   70 P   70 (335)
T ss_dssp             -
T ss_pred             C
Confidence            3

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=93.83  E-value=0.92  Score=35.88  Aligned_cols=108  Identities=17%  Similarity=0.073  Sum_probs=57.5

Q ss_pred             EcCCCCccHHHHHHc-C-CCeEEEEecChh--HHHH---HHHHHHhcC-CCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           38 LYCGAGVDVDKWETA-L-IANYIGIDVATS--GIGE---ARDTWENQR-KNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        38 lGcG~G~~~~~~~~~-~-~~~v~gvD~s~~--~l~~---a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      +|=|.=.++..++.. + ...++++-..+.  ..+.   +..++.... .+ -......|+....-  ........||.|
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~--~~~~~~~~FDrI   79 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHK--HFRLKNQRFDRI   79 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCcccc--cccccCCcCCEE
Confidence            444444555555554 3 346766654443  2221   222222221 11 12335555554332  222246899999


Q ss_pred             Eeccccccc---------cCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          110 CCFQHLQMC---------FETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       110 ~~~~~l~~~---------~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +-+|.....         -.+..-+..++..+..+|+++|.+.++..+
T Consensus        80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~  127 (166)
T PF10354_consen   80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD  127 (166)
T ss_pred             EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            887733210         011234678899999999999999888444

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=93.72  E-value=1.1  Score=35.77  Aligned_cols=100  Identities=14%  Similarity=0.178  Sum_probs=57.8

Q ss_pred             CCC-EEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCC--CceeEEEEcCCCCCchhhhhhhc---C
Q 025059           31 PYV-TVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQMQEK---A  103 (258)
Q Consensus        31 ~~~-~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~---~  103 (258)
                      ++. .|+.||||-=.-...+.... ...++-+|. +++++.-++.++....  ..+.+++.+|+.+..+...+...   .
T Consensus        77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~  155 (183)
T PF04072_consen   77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDP  155 (183)
T ss_dssp             TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred             CCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCC
Confidence            555 89999998754434443322 335666665 4455555555544311  11346799999876665555422   4


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHH
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVS  133 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~  133 (258)
                      ...-++++-.++.|  .+.+....+++.++
T Consensus       156 ~~ptl~i~Egvl~Y--l~~~~~~~ll~~ia  183 (183)
T PF04072_consen  156 DRPTLFIAEGVLMY--LSPEQVDALLRAIA  183 (183)
T ss_dssp             TSEEEEEEESSGGG--S-HHHHHHHHHHH-
T ss_pred             CCCeEEEEcchhhc--CCHHHHHHHHHHhC
Confidence            66778888888888  46777888887663

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=93.65  E-value=0.98  Score=42.28  Aligned_cols=115  Identities=12%  Similarity=0.091  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-----CCCeEEEEecChhHHHHHHHHHHhcCCCc-eeEEEEcCCCCCchhhhhhhcCC
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      |+..|.|.+||+|+++......     ....++|.+....+...|+..+.-+.... ......+|....+-  ..  ...
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d--~~--~~~  292 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKE--WE--NEN  292 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCcc--cc--ccc
Confidence            5678999999999998765432     12369999999999998887654332110 11222333222110  00  234


Q ss_pred             ceeEEEecccc---------------------ccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          105 QADLVCCFQHL---------------------QMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       105 ~fD~V~~~~~l---------------------~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +||+|+++-..                     |........-..++..+..+|++||...+..|..
T Consensus       293 ~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g  358 (501)
T TIGR00497       293 GFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG  358 (501)
T ss_pred             cCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence            57776654311                     1000111234678888999999999877665543

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=93.40  E-value=0.17  Score=42.75  Aligned_cols=59  Identities=5%  Similarity=0.035  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhcCC-CCEEEEEcCCCCccHHHHHHc---------CCCeEEEEecChhHHHHHHHHHHh
Q 025059           18 EFAKTALIKIYSHP-YVTVCDLYCGAGVDVDKWETA---------LIANYIGIDVATSGIGEARDTWEN   76 (258)
Q Consensus        18 ~~~k~~li~~~~~~-~~~VLDlGcG~G~~~~~~~~~---------~~~~v~gvD~s~~~l~~a~~~~~~   76 (258)
                      +|+...+.....+. ..+|+|+|+|+|.++..+++.         ...+++-+|+|+.+.+..++++..
T Consensus         4 ~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen    4 RWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             HHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             HHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            56665554444443 479999999999999888764         124899999999999988888765

; PDB: 4F3N_A 1ZKD_B.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=93.07  E-value=0.95  Score=39.28  Aligned_cols=99  Identities=17%  Similarity=0.210  Sum_probs=60.2

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhh-hhcCCce
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~f  106 (258)
                      ..++.+||..|+|. |..+..+++....++++++.++...+.+++.        .+..+..+. +......+ ......+
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~--------g~~~~~~~~-~~~~~~~~~~~~~~~~  233 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL--------GADEVLNSL-DDSPKDKKAAGLGGGF  233 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh--------CCCEEEcCC-CcCHHHHHHHhcCCCc
Confidence            45778999988763 6666666665444799999999888777542        111111111 11111111 1134679


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+|+.....          ...+..+.+.|+++|.++...
T Consensus       234 D~vid~~g~----------~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         234 DVIFDFVGT----------QPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             eEEEECCCC----------HHHHHHHHHHhhcCCEEEEEC
Confidence            998653211          246777889999999998763

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=92.86  E-value=0.64  Score=42.46  Aligned_cols=125  Identities=13%  Similarity=0.022  Sum_probs=74.6

Q ss_pred             CCEEEEEcCCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcee
Q 025059           32 YVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD  107 (258)
                      ...++|+|.|.|...-.+...   ....++.||.|..|+........+.... .-.++...+...   ..++. ....||
T Consensus       201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~-g~~~v~~~~~~r---~~~pi~~~~~yD  276 (491)
T KOG2539|consen  201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHI-GEPIVRKLVFHR---QRLPIDIKNGYD  276 (491)
T ss_pred             hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhc-Cchhccccchhc---ccCCCCccccee
Confidence            467888888876443332222   2457999999999999887776551100 111111111111   11111 346699


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE---cCchHHHHHHHHhH
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT---PDSSTIWAKYQKNV  160 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~---~~~~~~~~~~~~~~  160 (258)
                      +|+|.+.++..-.........-....+..++||.+++.-   +.+-.+...-++++
T Consensus       277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l~eaR~~~  332 (491)
T KOG2539|consen  277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELLTEARQNL  332 (491)
T ss_pred             eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchhhHHHHHHhc
Confidence            999999998755545455566667778889999998883   33344444444443

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=92.23  E-value=0.47  Score=41.79  Aligned_cols=96  Identities=11%  Similarity=0.090  Sum_probs=57.1

Q ss_pred             CCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++.+||=.|||. |..+.++++. +..+++++|.+++.++.+++.-.      . .++  |..+..+..... ..+.+|
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa------~-~vi--~~~~~~~~~~~~-~~g~~D  237 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGA------D-KLV--NPQNDDLDHYKA-EKGYFD  237 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCC------c-EEe--cCCcccHHHHhc-cCCCCC
Confidence            3688999898863 4444555554 45579999999988887765211      1 111  111112221111 224589


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+...+      .    ...+....++|++||.++..
T Consensus       238 ~vid~~G------~----~~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        238 VSFEVSG------H----PSSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             EEEECCC------C----HHHHHHHHHHhhcCCEEEEE
Confidence            9865432      1    23456677789999999876

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=91.77  E-value=0.5  Score=39.01  Aligned_cols=67  Identities=15%  Similarity=-0.003  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhh
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (258)
                      ..+-|.+||.|.|+.+..+...+.+++..++++...+.-.+--.+...  .+..+.+.|+....+...+
T Consensus        50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~~I~~~~  116 (326)
T KOG0821|consen   50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRFKIEKAF  116 (326)
T ss_pred             ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccceehHHhhc
Confidence            457899999999999999998888899999999888776554433222  2778888898765555444

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=91.63  E-value=0.3  Score=41.74  Aligned_cols=51  Identities=16%  Similarity=-0.020  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHH
Q 025059           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIG   68 (258)
Q Consensus        18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~   68 (258)
                      +.++..+-.+..-.+.+|||+|||.|-........+...+...|.+.+.++
T Consensus       103 ~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  103 PYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             HHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            444433323344478999999999998777777777668889999888773

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=91.60  E-value=0.31  Score=42.69  Aligned_cols=67  Identities=13%  Similarity=0.030  Sum_probs=48.6

Q ss_pred             EEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 025059           35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (258)
Q Consensus        35 VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~  113 (258)
                      |+|+-||-|++...+...+..-+.++|+++.+.+.-+.+++.       .+.++|+.+....     .-..+|+++...
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~-----~~~~~dvl~gg~   67 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPS-----DIPDFDILLGGF   67 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhh-----hCCCcCEEEecC
Confidence            689999999999999888886677899999988877666532       3456777654321     123579887654

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=91.49  E-value=1  Score=41.40  Aligned_cols=112  Identities=13%  Similarity=0.024  Sum_probs=70.7

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh---hcCCce
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ---EKANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~f  106 (258)
                      .+..+|=+|-|.|++...+... +..+++++.+.+.|++.|++.+.-.... +....-.|..  ++.+...   ..+..|
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl--~~~~~~~k~~~~~~~~  371 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGL--DFLQRTAKSQQEDICP  371 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhch--HHHHHHhhccccccCC
Confidence            4567888888989888777555 5579999999999999998866321100 2233333321  1211111   135688


Q ss_pred             eEEEecc---ccccccCCH--HHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQ---HLQMCFETE--ERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~---~l~~~~~~~--~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |++...-   -.|.+-...  --...++..+...|.|-|.|++.
T Consensus       372 dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in  415 (482)
T KOG2352|consen  372 DVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN  415 (482)
T ss_pred             cEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence            8885421   122211112  23578999999999999999887

>PTZ00357 methyltransferase; Provisional

Probab=91.30  E-value=0.73  Score=44.26  Aligned_cols=107  Identities=19%  Similarity=0.212  Sum_probs=68.0

Q ss_pred             CEEEEEcCCCCccHHHHHHc----CC-CeEEEEecChhHHHHHHHHHHh-cCC-------CceeEEEEcCCCCCchhh--
Q 025059           33 VTVCDLYCGAGVDVDKWETA----LI-ANYIGIDVATSGIGEARDTWEN-QRK-------NFIAEFFEADPCAENFET--   97 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~----~~-~~v~gvD~s~~~l~~a~~~~~~-~~~-------~~~~~~~~~d~~~~~~~~--   97 (258)
                      ..|+=+|+|.|.+....++.    +. -++++|+-++.++.....+... ..+       +.+++++..|+.......  
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            46899999999988776654    22 2899999997765555444322 122       336899999998743210  


Q ss_pred             -h--hhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccC----CcE
Q 025059           98 -Q--MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP----GGY  141 (258)
Q Consensus        98 -~--~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp----gG~  141 (258)
                       .  .+..-+++|+|++-. |. .|..-+--.+.|.-+.+.||+    +|+
T Consensus       782 ~s~~~P~~~gKaDIVVSEL-LG-SFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVSEL-LG-SLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccccccccccccceehHhh-hc-ccccccCCHHHHHHHHHhhhhhcccccc
Confidence             0  011124799998732 11 344455556777777777776    776

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=91.25  E-value=0.21  Score=47.01  Aligned_cols=104  Identities=17%  Similarity=0.163  Sum_probs=58.0

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc----hhhhhhh
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN----FETQMQE  101 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~  101 (258)
                      +++++..||||||.+|++++-.... + .+-|+|+|+-|--         ..+   ++.-.+.|+....    +...+  
T Consensus        41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik---------p~~---~c~t~v~dIttd~cr~~l~k~l--  106 (780)
T KOG1098|consen   41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK---------PIP---NCDTLVEDITTDECRSKLRKIL--  106 (780)
T ss_pred             cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc---------cCC---ccchhhhhhhHHHHHHHHHHHH--
Confidence            4568899999999999998877665 3 2479999986422         000   2333344443322    22222  


Q ss_pred             cCCceeEEEeccccc-------cccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          102 KANQADLVCCFQHLQ-------MCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~-------~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ...+.|+|+.-.+..       .++....-.-.++.-....|..||.|+--
T Consensus       107 ~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtk  157 (780)
T KOG1098|consen  107 KTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTK  157 (780)
T ss_pred             HhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccc
Confidence            234557775433211       11111122234556666778899996544

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.93  E-value=2.2  Score=37.37  Aligned_cols=102  Identities=11%  Similarity=0.078  Sum_probs=61.3

Q ss_pred             CCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC-chhhhhhh--cCC
Q 025059           30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQE--KAN  104 (258)
Q Consensus        30 ~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~--~~~  104 (258)
                      +++.+||=+|+|+ |-.+..+++. +.++++.+|+++.-++.|++ +--     ............ .+.+....  ...
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga-----~~~~~~~~~~~~~~~~~~v~~~~g~~  241 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA-----TVTDPSSHKSSPQELAELVEKALGKK  241 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC-----eEEeeccccccHHHHHHHHHhhcccc
Confidence            4789999999997 4444444444 77899999999999999987 421     222111111111 11111111  124


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      .+|+++....++          ..++.....+++||.+++...
T Consensus       242 ~~d~~~dCsG~~----------~~~~aai~a~r~gGt~vlvg~  274 (354)
T KOG0024|consen  242 QPDVTFDCSGAE----------VTIRAAIKATRSGGTVVLVGM  274 (354)
T ss_pred             CCCeEEEccCch----------HHHHHHHHHhccCCEEEEecc
Confidence            588876544333          345555778999999776633

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=89.76  E-value=0.47  Score=36.58  Aligned_cols=104  Identities=15%  Similarity=0.032  Sum_probs=47.0

Q ss_pred             CCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ..-|||+|-|+|..-..+... +..+++.+|-.-.+-..+.  -+      .-.++.+|+.+.-  +.+..-..+.-++.
T Consensus        29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~--P~------~~~~ilGdi~~tl--~~~~~~g~~a~laH   98 (160)
T PF12692_consen   29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST--PP------EEDLILGDIRETL--PALARFGAGAALAH   98 (160)
T ss_dssp             -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG-----------GGGEEES-HHHHH--HHHHHH-S-EEEEE
T ss_pred             CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC--Cc------hHheeeccHHHHh--HHHHhcCCceEEEE
Confidence            356999999999876666554 5568999995422211110  00      2246666653211  11111233444454


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +-.+.++--.+......+-.-+..+|.|||+++-.
T Consensus        99 aD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~  133 (160)
T PF12692_consen   99 ADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG  133 (160)
T ss_dssp             E----S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             eecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence            44444431111122344455678899999988753

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=89.70  E-value=1.4  Score=39.38  Aligned_cols=42  Identities=14%  Similarity=0.010  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHH
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD   72 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~   72 (258)
                      +-..|+|+|.|.|.++..+.-...-.|.+||-|....+.|++
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            446799999999998887766544489999999766666544

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=89.57  E-value=1.1  Score=39.55  Aligned_cols=104  Identities=13%  Similarity=0.123  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      ..+++||-||-|++...+...++.-+.++|+++.+++.-+.+++.      ..++..|+........   ....+|+++.
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~---~~~~~Dvlig   73 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL---RKSDVDVLIG   73 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc---cccCCCEEEe
Confidence            468999999999999999888887889999999998877666542      3566677654332111   1117899987


Q ss_pred             ccccccc---------cCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          112 FQHLQMC---------FETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       112 ~~~l~~~---------~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+-....         -+....+-.-+.++...++| -.|++.
T Consensus        74 GpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~E  115 (328)
T COG0270          74 GPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLE  115 (328)
T ss_pred             CCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEe
Confidence            6544310         11112233445566677788 344444

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=88.85  E-value=1.3  Score=41.53  Aligned_cols=101  Identities=17%  Similarity=0.173  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCCCC-ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC-------------Cchh
Q 025059           31 PYVTVCDLYCGAG-VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-------------ENFE   96 (258)
Q Consensus        31 ~~~~VLDlGcG~G-~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-------------~~~~   96 (258)
                      ++.+||=+|||.= ..+..++......++++|.+++.++.+++ +       ..+++..|..+             .++.
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-l-------Ga~~v~v~~~e~g~~~~gYa~~~s~~~~  234 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-M-------GAEFLELDFKEEGGSGDGYAKVMSEEFI  234 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c-------CCeEEeccccccccccccceeecCHHHH
Confidence            5689999999974 44444555433479999999998777765 2       22333333211             0110


Q ss_pred             ----hhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059           97 ----TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus        97 ----~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                          ..+.+.-..+|+|+..-.+..    .+...-+.+++.+.+|||+.++
T Consensus       235 ~~~~~~~~e~~~~~DIVI~TalipG----~~aP~Lit~emv~~MKpGsvIV  281 (511)
T TIGR00561       235 AAEMELFAAQAKEVDIIITTALIPG----KPAPKLITEEMVDSMKAGSVIV  281 (511)
T ss_pred             HHHHHHHHHHhCCCCEEEECcccCC----CCCCeeehHHHHhhCCCCCEEE
Confidence                001222457999977653322    2223346777888899998876

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=88.54  E-value=3.6  Score=39.44  Aligned_cols=104  Identities=12%  Similarity=0.034  Sum_probs=63.8

Q ss_pred             CEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        33 ~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      .+|+=+|+|. |..+.+........++.+|.+++.++.+++.        ....+.+|+.+.......  .-++.|.|++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~a--gi~~A~~vv~  470 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYGDATQLELLRAA--GAEKAEAIVI  470 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEeeCCCHHHHHhc--CCccCCEEEE
Confidence            4566666665 3323232233333899999999998887642        456889999876543322  3457888776


Q ss_pred             ccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHH
Q 025059          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (258)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~  153 (258)
                      ..      .+.+.... +....+.+.|...++....+.....
T Consensus       471 ~~------~d~~~n~~-i~~~~r~~~p~~~IiaRa~~~~~~~  505 (601)
T PRK03659        471 TC------NEPEDTMK-IVELCQQHFPHLHILARARGRVEAH  505 (601)
T ss_pred             Ee------CCHHHHHH-HHHHHHHHCCCCeEEEEeCCHHHHH
Confidence            43      33333333 4444556788888888766664433

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=88.10  E-value=5.9  Score=32.78  Aligned_cols=98  Identities=23%  Similarity=0.201  Sum_probs=58.7

Q ss_pred             CCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhh-hhcCCcee
Q 025059           30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~fD  107 (258)
                      .++.+||-.|+|. |..+..+++....++++++.++...+.+++...      . .++  +.........+ ......+|
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~------~-~~~--~~~~~~~~~~~~~~~~~~~d  203 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA------D-HVI--DYKEEDLEEELRLTGGGGAD  203 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC------c-eec--cCCcCCHHHHHHHhcCCCCC
Confidence            5788999999986 555555655544689999999877776643210      1 111  11111111110 11246799


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +|+....-      .    ..+..+.+.|+++|.++...
T Consensus       204 ~vi~~~~~------~----~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         204 VVIDAVGG------P----ETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             EEEECCCC------H----HHHHHHHHhcccCCEEEEEc
Confidence            99764321      1    34666778889999998763

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=87.96  E-value=2.9  Score=36.78  Aligned_cols=92  Identities=5%  Similarity=-0.082  Sum_probs=56.0

Q ss_pred             cCCCCEEEEEcCCCCc-cHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           29 SHPYVTVCDLYCGAGV-DVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~-~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      .+++.+||=+|||.=+ .+..+++.  +..+++++|.+++-++.|++ .       ..... .+    .+.     ....
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~-------~~~~~-~~----~~~-----~~~g  222 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A-------DETYL-ID----DIP-----EDLA  222 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c-------Cceee-hh----hhh-----hccC
Confidence            3578999999987633 34455543  44589999999887777753 1       11111 11    110     1224


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+|+-.-+-.       .....+....++|++||.+++.
T Consensus       223 ~d~viD~~G~~-------~~~~~~~~~~~~l~~~G~iv~~  255 (341)
T cd08237         223 VDHAFECVGGR-------GSQSAINQIIDYIRPQGTIGLM  255 (341)
T ss_pred             CcEEEECCCCC-------ccHHHHHHHHHhCcCCcEEEEE
Confidence            88886543210       0234677788899999998866

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=87.72  E-value=3.6  Score=35.03  Aligned_cols=114  Identities=12%  Similarity=0.055  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC------CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (258)
                      .+...++|+|||+|.++..++...      ...++.||-...-.. +-.+.........+.-+..|+.+..+........
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~~~~~~R~riDI~dl~l~~~~~~~~   95 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDESEPKFERLRIDIKDLDLSKLPELQN   95 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCCCCceEEEEEEeeccchhhcccccC
Confidence            467899999999999888876642      347999997553322 2222322221124666777777766644332111


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhc-------ccCCcEEEEEEcCc
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSL-------LKPGGYFLGITPDS  149 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~-------LkpgG~~i~~~~~~  149 (258)
                      ..-.+|.+.-  | +....  .+.+|+-+.+.       .+..|++|.+...+
T Consensus        96 ~~~~vv~isK--H-LCG~A--TDlaLRcl~~~~~~~~~~~~~~gi~iA~CCHH  143 (259)
T PF05206_consen   96 DEKPVVAISK--H-LCGAA--TDLALRCLLNSQKLSEGNGSVRGIVIAPCCHH  143 (259)
T ss_pred             CCCcEEEEEc--c-ccccc--hhHHHHhhccCccccccCCccCeEEEEeCCCC
Confidence            2222333222  2 11111  22334433333       34689888885444

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=87.27  E-value=6.2  Score=38.06  Aligned_cols=102  Identities=14%  Similarity=0.046  Sum_probs=64.4

Q ss_pred             CCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           32 YVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        32 ~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ..+|+=+|||. |..+...... +. .++.+|.+++.++.+++.        ....+.+|..+.......  .-++.|.|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~a--gi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESA--GAAKAEVL  468 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhc--CCCcCCEE
Confidence            35788888886 4433333333 44 899999999998888642        456789999876543221  34578888


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~  151 (258)
                      ++..      .+.+ ....+....+.+.|+-.++....+...
T Consensus       469 vv~~------~d~~-~n~~i~~~ar~~~p~~~iiaRa~d~~~  503 (621)
T PRK03562        469 INAI------DDPQ-TSLQLVELVKEHFPHLQIIARARDVDH  503 (621)
T ss_pred             EEEe------CCHH-HHHHHHHHHHHhCCCCeEEEEECCHHH
Confidence            7643      2333 333444455556788777776666544

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=87.23  E-value=13  Score=30.23  Aligned_cols=78  Identities=18%  Similarity=0.118  Sum_probs=44.6

Q ss_pred             CCEEEEEcCCC-Cc-cHHHHHHcCCCeEEEEecCh-------------------hHHHHHHHHHHhcCCCceeEEEEcCC
Q 025059           32 YVTVCDLYCGA-GV-DVDKWETALIANYIGIDVAT-------------------SGIGEARDTWENQRKNFIAEFFEADP   90 (258)
Q Consensus        32 ~~~VLDlGcG~-G~-~~~~~~~~~~~~v~gvD~s~-------------------~~l~~a~~~~~~~~~~~~~~~~~~d~   90 (258)
                      ..+||=+|||. |. .+..++..+.++++.+|.+.                   .-.+.+.+++.......++..+...+
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i  100 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERV  100 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcC
Confidence            57899999995 43 34445555888999999762                   22344455555443333444444444


Q ss_pred             CCCchhhhhhhcCCceeEEEecc
Q 025059           91 CAENFETQMQEKANQADLVCCFQ  113 (258)
Q Consensus        91 ~~~~~~~~~~~~~~~fD~V~~~~  113 (258)
                      ....+..    .-..+|+|+...
T Consensus       101 ~~~~~~~----~~~~~D~Vi~~~  119 (202)
T TIGR02356       101 TAENLEL----LINNVDLVLDCT  119 (202)
T ss_pred             CHHHHHH----HHhCCCEEEECC
Confidence            3222211    135799997753

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=86.97  E-value=4.8  Score=35.79  Aligned_cols=98  Identities=15%  Similarity=0.144  Sum_probs=56.1

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (258)
                      .+++.+||=.|+|. |..+..+++. +...++++|.++..++.+++.-.      . .++.  ..+..+...+.. ..+.
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga------~-~~i~--~~~~~~~~~i~~~~~~g  259 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA------T-ATVN--AGDPNAVEQVRELTGGG  259 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC------c-eEeC--CCchhHHHHHHHHhCCC
Confidence            45788888898764 4444555554 44469999999988887754210      1 1111  111112111111 2236


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+|+-.-.      .    ...+....++|+++|.++..
T Consensus       260 ~d~vid~~G------~----~~~~~~~~~~l~~~G~iv~~  289 (371)
T cd08281         260 VDYAFEMAG------S----VPALETAYEITRRGGTTVTA  289 (371)
T ss_pred             CCEEEECCC------C----hHHHHHHHHHHhcCCEEEEE
Confidence            899865321      1    13455667789999998865

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK10458 DNA cytosine methylase; Provisional

Probab=86.92  E-value=2.3  Score=39.43  Aligned_cols=59  Identities=14%  Similarity=0.118  Sum_probs=42.1

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE   93 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~   93 (258)
                      ..+++|+-||-|++...+...+..-+.++|+++.+.+.-+.++....   ....+..|+.+.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p---~~~~~~~DI~~i  146 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDP---ATHRFNEDIRDI  146 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCC---ccceeccChhhC
Confidence            46999999999999999988787678899999887776555542111   223445666543

>cd08230 glucose_DH Glucose dehydrogenase

Probab=86.83  E-value=5.5  Score=35.14  Aligned_cols=94  Identities=11%  Similarity=0.015  Sum_probs=54.7

Q ss_pred             CCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEec---ChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDV---ATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        30 ~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~---s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      .++.+||=+|+|. |..+.++++....++++++.   ++.-++.+++.        .+..+  +..+....+ .. ..+.
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~--------Ga~~v--~~~~~~~~~-~~-~~~~  238 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL--------GATYV--NSSKTPVAE-VK-LVGE  238 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc--------CCEEe--cCCccchhh-hh-hcCC
Confidence            4788999999874 45555555553338999987   55555555421        22222  211111111 11 2346


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+|+-..+          ....+....++|++||.+++.
T Consensus       239 ~d~vid~~g----------~~~~~~~~~~~l~~~G~~v~~  268 (355)
T cd08230         239 FDLIIEATG----------VPPLAFEALPALAPNGVVILF  268 (355)
T ss_pred             CCEEEECcC----------CHHHHHHHHHHccCCcEEEEE
Confidence            898866432          113567778899999998765

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.66  E-value=7.5  Score=33.67  Aligned_cols=82  Identities=11%  Similarity=0.091  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc----hhhhhhhcC
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN----FETQMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~~~  103 (258)
                      .|..||==|.|.|-   .+..+++.+. .++..|++++..++..+.....+   ++....+|+.+..    ....+.+.-
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            57889988888872   2334444455 89999999999998888777653   7888999997632    112233456


Q ss_pred             CceeEEEeccccc
Q 025059          104 NQADLVCCFQHLQ  116 (258)
Q Consensus       104 ~~fD~V~~~~~l~  116 (258)
                      +..|+++.+.++.
T Consensus       113 G~V~ILVNNAGI~  125 (300)
T KOG1201|consen  113 GDVDILVNNAGIV  125 (300)
T ss_pred             CCceEEEeccccc
Confidence            8899999887653

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=86.20  E-value=2.2  Score=38.44  Aligned_cols=45  Identities=11%  Similarity=0.010  Sum_probs=34.4

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHH
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE   75 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~   75 (258)
                      .|+.+||-|++| |..+..++..++.+|++||+|+..+...+-+..
T Consensus        34 ~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   34 GPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             CCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence            488999999755 555666667777799999999998876655543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=85.75  E-value=7.3  Score=34.40  Aligned_cols=98  Identities=12%  Similarity=0.057  Sum_probs=56.3

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (258)
                      ..++.+||=.|||. |..+..+++. +..+++++|.++..++.+++. ..     . .++  |..+......+..  ...
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga-----~-~~i--~~~~~~~~~~i~~~~~~~  244 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA-----T-HTV--NSSGTDPVEAIRALTGGF  244 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC-----c-eEE--cCCCcCHHHHHHHHhCCC
Confidence            45789999998764 4444555555 444699999998888877532 11     1 112  1111122111111  224


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+-.-+      ..    ..+....+.+++||.+++.
T Consensus       245 g~d~vid~~g------~~----~~~~~~~~~~~~~G~iv~~  275 (358)
T TIGR03451       245 GADVVIDAVG------RP----ETYKQAFYARDLAGTVVLV  275 (358)
T ss_pred             CCCEEEECCC------CH----HHHHHHHHHhccCCEEEEE
Confidence            6898865331      11    2455566789999999876

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=85.71  E-value=0.8  Score=41.42  Aligned_cols=62  Identities=18%  Similarity=0.192  Sum_probs=50.5

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCce-eEEEEcCC
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADP   90 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~d~   90 (258)
                      ..++|..|-|+.||-|-++..++..+ .+|++-|.++++++..+...+-+..... +..+..|+
T Consensus       246 ~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda  308 (495)
T KOG2078|consen  246 LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA  308 (495)
T ss_pred             ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence            56789999999999999999887777 5999999999999999888766543333 66666664

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=85.04  E-value=8.5  Score=33.66  Aligned_cols=90  Identities=13%  Similarity=-0.056  Sum_probs=54.0

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .+++.+||=.|+|. |..+..+++....++++++.+++-++.|++.-        ++.+ .|..+  .      ..+.+|
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~G--------a~~v-i~~~~--~------~~~~~d  225 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALG--------AASA-GGAYD--T------PPEPLD  225 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhC--------Ccee-ccccc--c------Ccccce
Confidence            45789999999764 33444455543347999999988877775531        1111 11111  0      123578


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +++..-.       .   ...+....++|++||.+++.
T Consensus       226 ~~i~~~~-------~---~~~~~~~~~~l~~~G~~v~~  253 (329)
T TIGR02822       226 AAILFAP-------A---GGLVPPALEALDRGGVLAVA  253 (329)
T ss_pred             EEEECCC-------c---HHHHHHHHHhhCCCcEEEEE
Confidence            6643221       1   13577788899999999876

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=84.93  E-value=9.9  Score=36.06  Aligned_cols=100  Identities=10%  Similarity=0.004  Sum_probs=57.8

Q ss_pred             CEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        33 ~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      .+|+=+|||. |..+.+........++.+|.+++.++.+++.        ....+++|..+.......  .-+++|.|++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a--~i~~a~~viv  487 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLA--HLDCARWLLL  487 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhc--CccccCEEEE
Confidence            4567777775 3333222222223899999999988877642        467899999875543222  3357886654


Q ss_pred             ccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .-      .+......+... .+.+.|+..++....+.
T Consensus       488 ~~------~~~~~~~~iv~~-~~~~~~~~~iiar~~~~  518 (558)
T PRK10669        488 TI------PNGYEAGEIVAS-AREKRPDIEIIARAHYD  518 (558)
T ss_pred             Ec------CChHHHHHHHHH-HHHHCCCCeEEEEECCH
Confidence            32      122222233333 45557777777665443

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=84.80  E-value=19  Score=29.60  Aligned_cols=78  Identities=13%  Similarity=0.033  Sum_probs=44.3

Q ss_pred             CCCEEEEEcCCC-Cc-cHHHHHHcCCCeEEEEecCh------------------hHHHHHHHHHHhcCCCceeEEEEcCC
Q 025059           31 PYVTVCDLYCGA-GV-DVDKWETALIANYIGIDVAT------------------SGIGEARDTWENQRKNFIAEFFEADP   90 (258)
Q Consensus        31 ~~~~VLDlGcG~-G~-~~~~~~~~~~~~v~gvD~s~------------------~~l~~a~~~~~~~~~~~~~~~~~~d~   90 (258)
                      ...+|+=+|||. |. .+..++..+..+++.+|.+.                  .-.+.+.+++.......+++.+...+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i  106 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI  106 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence            457899999994 43 44555556888899998772                  22334455554443333444444444


Q ss_pred             CCCchhhhhhhcCCceeEEEec
Q 025059           91 CAENFETQMQEKANQADLVCCF  112 (258)
Q Consensus        91 ~~~~~~~~~~~~~~~fD~V~~~  112 (258)
                      ......+.    -..+|+|+..
T Consensus       107 ~~~~~~~~----~~~~DvVI~a  124 (212)
T PRK08644        107 DEDNIEEL----FKDCDIVVEA  124 (212)
T ss_pred             CHHHHHHH----HcCCCEEEEC
Confidence            33222111    2468888754

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=84.60  E-value=3.3  Score=30.57  Aligned_cols=84  Identities=21%  Similarity=0.293  Sum_probs=53.4

Q ss_pred             CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCCceeEEEeccccccccC
Q 025059           43 GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQADLVCCFQHLQMCFE  120 (258)
Q Consensus        43 G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~fD~V~~~~~l~~~~~  120 (258)
                      |..+..+++....+++++|.++.-++.+++.-.       ..++..+  +..+.+.+.+  +...+|+|+-.-+      
T Consensus         3 G~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga-------~~~~~~~--~~~~~~~i~~~~~~~~~d~vid~~g------   67 (130)
T PF00107_consen    3 GLMAIQLAKAMGAKVIATDRSEEKLELAKELGA-------DHVIDYS--DDDFVEQIRELTGGRGVDVVIDCVG------   67 (130)
T ss_dssp             HHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE-------SEEEETT--TSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred             HHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc-------ccccccc--ccccccccccccccccceEEEEecC------
Confidence            555666666633799999999998888865321       1222222  2223333322  2347999976442      


Q ss_pred             CHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          121 TEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       121 ~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                          ....+.....+|+++|.+++.
T Consensus        68 ----~~~~~~~~~~~l~~~G~~v~v   88 (130)
T PF00107_consen   68 ----SGDTLQEAIKLLRPGGRIVVV   88 (130)
T ss_dssp             ----SHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----cHHHHHHHHHHhccCCEEEEE
Confidence                135777788899999999887

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=84.59  E-value=20  Score=29.17  Aligned_cols=109  Identities=9%  Similarity=-0.071  Sum_probs=59.6

Q ss_pred             CCEEEEEcCCCCccHHHH----HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh-h---hhcC
Q 025059           32 YVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-M---QEKA  103 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~----~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~---~~~~  103 (258)
                      +.+||=.|++.| ....+    ...+. +|++++-++..++...+......   ++.++.+|+.+..-... +   ....
T Consensus         5 ~~~vlItGa~g~-iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          5 GKKVAIIGVSEG-LGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CcEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            568899987643 23322    23355 89999998877766544443321   57888999876431111 1   1112


Q ss_pred             CceeEEEeccccccc--cCCHH-----------HHHHHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQMC--FETEE-----------RARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~--~~~~~-----------~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +..|.++...+....  +...+           ....+++.+...++++|.++++
T Consensus        80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~  134 (238)
T PRK05786         80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV  134 (238)
T ss_pred             CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence            456877665432110  00011           1123355556667778877766

>PRK11524 putative methyltransferase; Provisional

Probab=84.25  E-value=1.3  Score=38.21  Aligned_cols=60  Identities=10%  Similarity=0.149  Sum_probs=36.8

Q ss_pred             eEEEEcCCCCCchhhhhhhcCCceeEEEec--cccc--cc-----cC---CHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059           83 AEFFEADPCAENFETQMQEKANQADLVCCF--QHLQ--MC-----FE---TEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus        83 ~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~--~~l~--~~-----~~---~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ..++++|+.+  +...+  +++++|+|++.  +...  +.     ..   ...-+...+.++.++|||||.+++..
T Consensus         9 ~~i~~gD~~~--~l~~l--~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524          9 KTIIHGDALT--ELKKI--PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             CEEEeccHHH--HHHhc--ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            4677788743  11122  46789998884  2210  00     00   01224678999999999999998863

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=82.88  E-value=4.4  Score=34.76  Aligned_cols=54  Identities=24%  Similarity=0.290  Sum_probs=44.2

Q ss_pred             HHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc
Q 025059           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (258)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~   77 (258)
                      .+|..+..++..|||.=+|+|..+......+- .++|+|+++..++.+.+|+...
T Consensus       214 r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         214 RLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             HHHHhcCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence            34444777999999999999987766655554 8999999999999999998754

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.61  E-value=10  Score=31.54  Aligned_cols=82  Identities=9%  Similarity=-0.049  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc----CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch----hhhhhh-
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF----ETQMQE-  101 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~-  101 (258)
                      ....||=.||..|+....++..    ++ +|+++--+-+-........       +......|+.++.-    .+.+.+ 
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~-------gl~~~kLDV~~~~~V~~v~~evr~~   77 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQF-------GLKPYKLDVSKPEEVVTVSGEVRAN   77 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhh-------CCeeEEeccCChHHHHHHHHHHhhC
Confidence            3468999999999987777654    44 7888765543333222221       45566777765431    112222 


Q ss_pred             cCCceeEEEeccccccccC
Q 025059          102 KANQADLVCCFQHLQMCFE  120 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~  120 (258)
                      ++++.|+.+.+.+..+.+.
T Consensus        78 ~~Gkld~L~NNAG~~C~~P   96 (289)
T KOG1209|consen   78 PDGKLDLLYNNAGQSCTFP   96 (289)
T ss_pred             CCCceEEEEcCCCCCcccc
Confidence            7889999887766655433

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=82.56  E-value=4.3  Score=35.35  Aligned_cols=96  Identities=17%  Similarity=0.137  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ++.+||-.|||. |..+..+++. +...+++++.++...+.+++. ..     . .++..  ....+.. .....+.+|+
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~-----~-~vi~~--~~~~~~~-~~~~~~~vd~  234 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GA-----D-ETVNL--ARDPLAA-YAADKGDFDV  234 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC-----C-EEEcC--Cchhhhh-hhccCCCccE
Confidence            688899988875 5555555555 444789999988887755442 11     1 12211  1111111 1112245899


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+.....          ...+..+.+.|+++|.++...
T Consensus       235 vld~~g~----------~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         235 VFEASGA----------PAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             EEECCCC----------HHHHHHHHHHHhcCCEEEEEe
Confidence            9754321          234677788999999998653

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences

Probab=82.55  E-value=1.5  Score=44.83  Aligned_cols=97  Identities=13%  Similarity=-0.015  Sum_probs=55.7

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      +..+||+|+|.-.=...+.- ....++.+|+-+-+-       ....+.....|+++|-....+.     ....+|.++|
T Consensus       823 ~~~~lDLGTGPE~RiLsliP-~~~pvtmvD~RP~ae-------~m~~w~t~T~y~~~DYl~~~~~-----~~~~~D~vta  889 (1289)
T PF06016_consen  823 PDHWLDLGTGPECRILSLIP-PDTPVTMVDTRPFAE-------PMNCWNTQTQYIQADYLSDAWW-----NGTPFDAVTA  889 (1289)
T ss_dssp             C-CEEEET--TT-CHHHCS--TTSEEEEEESS--SS-------SCCCCSTTEEEEES-TTSCCGG-----CC---SEEEE
T ss_pred             cceEEEccCCccceeeeccC-CCCceEEEecCCccc-------ccchhhhcceeeeeccccceeE-----ecCCCCEEEE
Confidence            57899999888632222211 234799999865431       1122334679999998776654     4678999999


Q ss_pred             ccccccccC-CHHHHHHHHHHHHhcccCCcE
Q 025059          112 FQHLQMCFE-TEERARRLLQNVSSLLKPGGY  141 (258)
Q Consensus       112 ~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~  141 (258)
                      .+.|..++- ..-.+.+.++++.+.+++.|.
T Consensus       890 ilSLGAAaA~a~~tl~~~l~~~l~~~~~~~~  920 (1289)
T PF06016_consen  890 ILSLGAAAASANVTLDAGLQQFLSQCVQANV  920 (1289)
T ss_dssp             CTCHHHHHHHCT--HHHHHHHHHHHHHCTT-
T ss_pred             EeeehhhhhcCCCcHHHHHHHHHHHHHhCCc
Confidence            998864321 223577888888888888776

The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=82.41  E-value=14  Score=32.57  Aligned_cols=99  Identities=11%  Similarity=0.019  Sum_probs=58.7

Q ss_pred             cCCCCEEEEEcC-C-CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGc-G-~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (258)
                      ..++.+||=.|+ | -|..+.++++....++++++.+++..+.+++.+..     . ..+..+ ....+...+.. ..+.
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa-----~-~vi~~~-~~~~~~~~i~~~~~~g  228 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF-----D-EAFNYK-EEPDLDAALKRYFPEG  228 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC-----C-EEEECC-CcccHHHHHHHHCCCC
Confidence            457899999998 3 56666777766444899999888877766533311     1 112111 01112221111 1246


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+|+...+           ...+..+.++|++||.++..
T Consensus       229 vD~v~d~vG-----------~~~~~~~~~~l~~~G~iv~~  257 (348)
T PLN03154        229 IDIYFDNVG-----------GDMLDAALLNMKIHGRIAVC  257 (348)
T ss_pred             cEEEEECCC-----------HHHHHHHHHHhccCCEEEEE
Confidence            898865331           13567778899999999865

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=81.82  E-value=18  Score=31.51  Aligned_cols=98  Identities=13%  Similarity=0.069  Sum_probs=54.4

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (258)
                      ..++.+||=+|+|. |..+..+++. +..+++++|.+++.++.+++.- .     . .++  |..+......... ....
T Consensus       161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~g-a-----~-~~i--~~~~~~~~~~~~~~~~~~  231 (339)
T cd08239         161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALG-A-----D-FVI--NSGQDDVQEIRELTSGAG  231 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC-C-----C-EEE--cCCcchHHHHHHHhCCCC
Confidence            34788999998763 3333444444 4434999999988877764321 1     1 111  1111111111110 2347


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+|+....          -...+....+.|+++|.+++.
T Consensus       232 ~d~vid~~g----------~~~~~~~~~~~l~~~G~~v~~  261 (339)
T cd08239         232 ADVAIECSG----------NTAARRLALEAVRPWGRLVLV  261 (339)
T ss_pred             CCEEEECCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence            999975331          112445666789999999866

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=81.81  E-value=6.2  Score=35.99  Aligned_cols=87  Identities=14%  Similarity=0.022  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|+=+|||. |..+...++....+++.+|+++.-++.|+.-        .+...  +.     .+.    -..+|+|
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~--------G~~~~--~~-----~e~----v~~aDVV  261 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME--------GYEVM--TM-----EEA----VKEGDIF  261 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc--------CCEEc--cH-----HHH----HcCCCEE
Confidence            789999999997 4444444444333899999998877766532        11111  11     111    1357999


Q ss_pred             EeccccccccCCHHHHHHHHH-HHHhcccCCcEEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQ-NVSSLLKPGGYFLGIT  146 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~-~i~~~LkpgG~~i~~~  146 (258)
                      +..-+.          ..++. ...+.+++||+++...
T Consensus       262 I~atG~----------~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         262 VTTTGN----------KDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             EECCCC----------HHHHHHHHHhcCCCCcEEEEeC
Confidence            764321          12333 4578999999997763

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=81.57  E-value=13  Score=32.11  Aligned_cols=97  Identities=15%  Similarity=0.114  Sum_probs=55.6

Q ss_pred             CCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++.+||-+|+|. |..+..+++. +...+++++.+++..+.+++.-    .  . .++..+  +.............+|
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g----~--~-~~~~~~--~~~~~~~~~~~~~~vd  228 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLG----A--T-ETVDPS--REDPEAQKEDNPYGFD  228 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhC----C--e-EEecCC--CCCHHHHHHhcCCCCc
Confidence            4788999998653 4455555555 4434889999988877764321    0  1 122211  1111110111345789


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+....          ....+..+.++|+++|.++..
T Consensus       229 ~v~~~~~----------~~~~~~~~~~~l~~~G~~v~~  256 (334)
T cd08234         229 VVIEATG----------VPKTLEQAIEYARRGGTVLVF  256 (334)
T ss_pred             EEEECCC----------ChHHHHHHHHHHhcCCEEEEE
Confidence            9975421          124566678889999999865

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=81.32  E-value=7.7  Score=32.99  Aligned_cols=97  Identities=18%  Similarity=0.068  Sum_probs=54.4

Q ss_pred             CCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++.+||=+|+|. |..+..+++. +...++++|.++.-++.+++.-.      . ..+..+-....+.. .. ....+|
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga------~-~~i~~~~~~~~~~~-~~-~~~g~d  189 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA------T-ALAEPEVLAERQGG-LQ-NGRGVD  189 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC------c-EecCchhhHHHHHH-Hh-CCCCCC
Confidence            3788999998864 3344445444 55459999998887776654211      1 11111100000100 10 234689


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+-..+          ....+....++|+++|.++..
T Consensus       190 ~vid~~G----------~~~~~~~~~~~l~~~G~iv~~  217 (280)
T TIGR03366       190 VALEFSG----------ATAAVRACLESLDVGGTAVLA  217 (280)
T ss_pred             EEEECCC----------ChHHHHHHHHHhcCCCEEEEe
Confidence            9865321          123566677889999999876

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=81.29  E-value=23  Score=29.94  Aligned_cols=106  Identities=12%  Similarity=0.032  Sum_probs=57.0

Q ss_pred             CEEEEEcCCCCccHHHHHH---c---CCCeEEEEecCh--------------------------hHHHHHHHHHHhcCC-
Q 025059           33 VTVCDLYCGAGVDVDKWET---A---LIANYIGIDVAT--------------------------SGIGEARDTWENQRK-   79 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~---~---~~~~v~gvD~s~--------------------------~~l~~a~~~~~~~~~-   79 (258)
                      ..|+|+||-.|+.+..+..   .   ...+++++|.=+                          ..++..++++...+. 
T Consensus        76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~  155 (248)
T PF05711_consen   76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLL  155 (248)
T ss_dssp             SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTS
T ss_pred             eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCCC
Confidence            5799999999986654422   1   234688887311                          123334443333221 


Q ss_pred             CceeEEEEcCCCCCchhhhhhh-cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059           80 NFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus        80 ~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ..++.++.+.+.     +.++. +..++-++.+-      .+--+....+|..+...|.|||++++.-.+.
T Consensus       156 ~~~v~~vkG~F~-----dTLp~~p~~~IAll~lD------~DlYesT~~aLe~lyprl~~GGiIi~DDY~~  215 (248)
T PF05711_consen  156 DDNVRFVKGWFP-----DTLPDAPIERIALLHLD------CDLYESTKDALEFLYPRLSPGGIIIFDDYGH  215 (248)
T ss_dssp             STTEEEEES-HH-----HHCCC-TT--EEEEEE---------SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred             cccEEEECCcch-----hhhccCCCccEEEEEEe------ccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence            236888888742     22211 22333333221      2334667899999999999999999985554

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=81.04  E-value=25  Score=27.86  Aligned_cols=31  Identities=16%  Similarity=0.081  Sum_probs=21.9

Q ss_pred             EEEEEcCCC-Ccc-HHHHHHcCCCeEEEEecCh
Q 025059           34 TVCDLYCGA-GVD-VDKWETALIANYIGIDVAT   64 (258)
Q Consensus        34 ~VLDlGcG~-G~~-~~~~~~~~~~~v~gvD~s~   64 (258)
                      +|+=+|||. |.. +..+++.+.++++-+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            478899984 543 4445556888899998775

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=80.96  E-value=3.5  Score=37.20  Aligned_cols=61  Identities=11%  Similarity=0.101  Sum_probs=48.0

Q ss_pred             eeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059           82 IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus        82 ~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ++.++++++.+  .....  +++++|.++.+-.+-|  -+.+.+.+.++.+.+.++|||.++.-...
T Consensus       276 rv~i~t~si~~--~L~~~--~~~s~~~~vL~D~~Dw--m~~~~~~~~~~~l~~~~~pgaRV~~Rsa~  336 (380)
T PF11899_consen  276 RVRIHTDSIEE--VLRRL--PPGSFDRFVLSDHMDW--MDPEQLNEEWQELARTARPGARVLWRSAA  336 (380)
T ss_pred             eEEEEeccHHH--HHHhC--CCCCeeEEEecchhhh--CCHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence            78888888643  11111  5799999999888877  46788999999999999999999987443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK08267 short chain dehydrogenase; Provisional

Probab=80.26  E-value=32  Score=28.49  Aligned_cols=77  Identities=8%  Similarity=-0.053  Sum_probs=46.6

Q ss_pred             EEEEEcCCCC--c-cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh-hhh---hhc-CCc
Q 025059           34 TVCDLYCGAG--V-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-TQM---QEK-ANQ  105 (258)
Q Consensus        34 ~VLDlGcG~G--~-~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~---~~~-~~~  105 (258)
                      +||=.|++.|  . .+..++..+. +|+.++.++..++........    .++.++++|+.+..-. ..+   ... .++
T Consensus         3 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~   77 (260)
T PRK08267          3 SIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGA----GNAWTGALDVTDRAAWDAALADFAAATGGR   77 (260)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            5777776543  1 2233334454 899999988877766554432    2678999999764321 111   111 467


Q ss_pred             eeEEEecccc
Q 025059          106 ADLVCCFQHL  115 (258)
Q Consensus       106 fD~V~~~~~l  115 (258)
                      .|+|+...+.
T Consensus        78 id~vi~~ag~   87 (260)
T PRK08267         78 LDVLFNNAGI   87 (260)
T ss_pred             CCEEEECCCC
Confidence            8998876654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
3bgv_A	313	Crystal Structure Of Mrna Cap Guanine-N7 Methyltran		9e-18
1ri1_A	298	Structure And Mechanism Of Mrna Cap (Guanine N-7) M		2e-15
1wzn_A	252	Crystal Structure Of The Sam-Dependent Methyltransf		6e-04

>pdb|3BGV|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase In Complex With Sah Length = 313

Iteration: 1
 Score = 87.0 bits (214), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 25/227 (11%)
Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN------FIAEFF 86
           +TV DL CG G D+ KW+   I   +  D+A   + + +  +E+ +        F AEF 
Sbjct: 36  ITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFI 95
Query: 87  EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
            AD   E    + ++     D+  C       FE+ E+A  +L+N    L PGGYF+G T
Sbjct: 96  TADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT 155
Query: 147 PDSSTIWAKYQKN-VEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLK 205
           P+S  +  + + +  E++ N                E Y + F+ ++  +PLFG KY   
Sbjct: 156 PNSFELIRRLEASETESFGN----------------EIYTVKFQ-KKGDYPLFGCKYDFN 198
Query: 206 FANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRHADE 252
               +    + LV+FP L  +A++  ++ V  +   EFY++    +E
Sbjct: 199 LEGVVDV-PEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNE 244

>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7) Methyltransferase Length = 298

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 101/239 (42%), Gaps = 25/239 (10%)
Query: 19  FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR 78
           F K  LI++Y+    +V DL CG G D+ K+E A I  Y G+D+A   I +AR    N +
Sbjct: 52  FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK 111
Query: 79  KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138
           + F   F   D    + +        + D++         F T E      +N++  L+P
Sbjct: 112 RRFKVFFRAQDSYGRHMDL-----GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRP 166
Query: 139 GGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLF 198
           GGYF+   P    I  +Y++                    + ++ Y I  E + E  P+ 
Sbjct: 167 GGYFIMTVPSRDVILERYKQ------------------GRMSNDFYKIELE-KMEDVPME 207
Query: 199 G-KKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRHADECWSK 256
             ++Y+    + ++   +  V F  ++   +  GL  VE +   +FY+D    +   SK
Sbjct: 208 SVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEGRRNPELSK 266

>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase From Pyrococcus Horikoshii Ot3 Length = 252

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 26/130 (20%)
Query: 35  VCDLYCGAGVDVDKWETALIAN----YIGIDVATSGIGEARDTWENQRKNFIAEFFEADP 90
           V DL CG G+      T  +A      +G+D+    +  AR   + + +N   EF + D 
Sbjct: 45  VLDLACGTGIP-----TLELAERGYEVVGLDLHEEMLRVARR--KAKERNLKIEFLQGDV 97
Query: 91  CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP--- 147
               F+       N+ D V  F    M F+ EE  R+L   V+  LKPGG F+   P   
Sbjct: 98  LEIAFK-------NEFDAVTMFFSTIMYFD-EEDLRKLFSKVAEALKPGGVFITDFPCWF 149
Query: 148 ----DSSTIW 153
               D   +W
Sbjct: 150 YGGRDGPVVW 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	3e-51
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	1e-41
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	2e-40
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	8e-09
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	6e-08
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	7e-08
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	2e-07
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	2e-07
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	3e-07
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	3e-07
3ocj_A	305	Putative exported protein; structural genomics, PS	5e-07
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	2e-06
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	2e-06
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	3e-06
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	1e-05
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	1e-05
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	2e-05
3lcc_A	235	Putative methyl chloride transferase; halide methy	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	5e-05
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	6e-05
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	6e-05
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	7e-05
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	8e-05
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	1e-04
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	1e-04
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	1e-04
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	2e-04
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	3e-04
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	4e-04
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	5e-04
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	8e-04
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	8e-04

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score =  168 bits (426), Expect = 3e-51
 Identities = 60/250 (24%), Positives = 104/250 (41%), Gaps = 24/250 (9%)

Query: 8   RSELTHHR-LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSG 66
           RS+  + R    F K  LI++Y+    +V DL CG G D+ K+E A I  Y G+D+A   
Sbjct: 40  RSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVS 99

Query: 67  IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERAR 126
           I +AR    N ++ F   F   D    +      +   + D++         F T E   
Sbjct: 100 INDARVRARNMKRRFKVFFRAQDSYGRHM-----DLGKEFDVISSQFSFHYAFSTSESLD 154

Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI 186
              +N++  L+PGGYF+   P    I  +Y++                    + ++ Y I
Sbjct: 155 IAQRNIARHLRPGGYFIMTVPSRDVILERYKQ------------------GRMSNDFYKI 196

Query: 187 TFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
             E  E+      ++Y+    + ++   +  V F  ++   +  GL  VE +   +FY+D
Sbjct: 197 ELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYED 256

Query: 247 NRHADECWSK 256
               +   SK
Sbjct: 257 EGRRNPELSK 266

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score =  143 bits (362), Expect = 1e-41
 Identities = 41/263 (15%), Positives = 87/263 (33%), Gaps = 32/263 (12%)

Query: 8   RSELTHHRLYEFAKTALIKIYSHPYV-------TVCDLYCGAGVDVDKWETALIANYIGI 60
           R+      L  + KT LI +Y             V  +  G G D++K+    IA  +  
Sbjct: 18  RTRGPLGILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVAT 77

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEA-----DPCAENFETQMQEK--ANQADLVCCFQ 113
           D     I    + +         ++++         ++ F + ++E     + +++    
Sbjct: 78  DPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQF 137

Query: 114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPN 173
            +   F     A  ++ N+S L   GG  L  T D   +     K     H         
Sbjct: 138 AIHYSFHPRHYA-TVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHK-------- 188

Query: 174 LVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLE 233
              N   SE+Y+   ++ +++       Y     +    E   ++    ++R+  E G  
Sbjct: 189 ---NLPSSENYMSVEKIADDRI----VVYNPSTMSTPMTE--YIIKKNDIVRVFNEYGFV 239

Query: 234 YVEIQNLNEFYDDNRHADECWSK 256
            V+  +     + ++      S 
Sbjct: 240 LVDNVDFATIIERSKKFINGAST 262

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score =  140 bits (354), Expect = 2e-40
 Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 30/247 (12%)

Query: 19  FAKTALIKIYSHPYV-------TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR 71
           + K+ LI  +            TV DL CG G D+ KW+   I   +  D+A   + + +
Sbjct: 15  WMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQ 74

Query: 72  DTWENQRKNFI------AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERA 125
             +E+ +          AEF  AD   E    + ++     D+  C       FE+ E+A
Sbjct: 75  QRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQA 134

Query: 126 RRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV 185
             +L+N    L PGGYF+G TP+S  +  + + +                     +E Y 
Sbjct: 135 DMMLRNACERLSPGGYFIGTTPNSFELIRRLEASET---------------ESFGNEIYT 179

Query: 186 ITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD 245
           + F+ ++  +PLFG KY       +    + LV+FP L  +A++  ++ V  +   EFY+
Sbjct: 180 VKFQ-KKGDYPLFGCKYDFNLEGVVDVP-EFLVYFPLLNEMAKKYNMKLVYKKTFLEFYE 237

Query: 246 DNRHADE 252
           +    +E
Sbjct: 238 EKIKNNE 244

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 53.7 bits (129), Expect = 8e-09
 Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 41/231 (17%)

Query: 18  EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVATSGIGEARDT 73
           +F +    +        V DL CG G+      T  +A      +G+D+    +  AR  
Sbjct: 28  DFVEEIFKEDAKREVRRVLDLACGTGIP-----TLELAERGYEVVGLDLHEEMLRVARR- 81

Query: 74  WENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVS 133
            + + +N   EF + D        +     N+ D V  F    + +  EE  R+L   V+
Sbjct: 82  -KAKERNLKIEFLQGD--VLEIAFK-----NEFDAVTMFFST-IMYFDEEDLRKLFSKVA 132

Query: 134 SLLKPGGYFL-------GITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI 186
             LKPGG F+           D   +W + +   +        ++P +          ++
Sbjct: 133 EALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQ---KLRFKRLV 189

Query: 187 TFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237
                  +   F    +L              + P  +RL  E   E V+I
Sbjct: 190 QILRPNGEVKAFLVDDELNI------------YTPREVRLLAEKYFEKVKI 228

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 38/234 (16%), Positives = 69/234 (29%), Gaps = 32/234 (13%)

Query: 10  ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY--IGIDVATSGI 67
           EL     Y      +++    P   + D+ CG G         L  +Y   G+D++   +
Sbjct: 13  ELMQDVPYPEWVAWVLEQV-EPGKRIADIGCGTGTAT----LLLADHYEVTGVDLSEEML 67

Query: 68  GEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARR 127
             A++  +    N   +F+  D      E          D +          +TE   ++
Sbjct: 68  EIAQE--KAMETNRHVDFWVQD--MRELELP-----EPVDAITILCDSLNYLQTEADVKQ 118

Query: 128 LLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSM----KPNLVPNCIRSES 183
              + + LL  GG  L        +   +     A H   SS      P   P  +  E 
Sbjct: 119 TFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHEL 178

Query: 184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237
                  E+ ++    + +  +                  I   REAG     +
Sbjct: 179 TFFIEG-EDGRYDRVDETHHQR-----------TYPPEQYITWLREAGFRVCAV 220

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 50.9 bits (122), Expect = 7e-08
 Identities = 30/227 (13%), Positives = 63/227 (27%), Gaps = 35/227 (15%)

Query: 24  LIKIYSHPYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVATSGIGEARDTWENQRK 79
                +  +    DL CG G       T  +     N   +D++   + EA +  + + +
Sbjct: 30  KCVENNLVFDDYLDLACGTGNL-----TENLCPKFKNTWAVDLSQEMLSEAEN--KFRSQ 82

Query: 80  NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG 139
                    D    N          + DL+ C           +  ++  + VS+ LK G
Sbjct: 83  GLKPRLACQD--ISNLNIN-----RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG 135

Query: 140 GYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFG 199
           G F+        +      N   Y +                  Y+  F  + E +    
Sbjct: 136 GVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFY---- 191

Query: 200 KKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
           K++  +         +       + +  +   L  ++        D 
Sbjct: 192 KRFDEEH-------EERAYKEEDIEKYLKHGQLNILDK------VDC 225

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 29/224 (12%), Positives = 67/224 (29%), Gaps = 40/224 (17%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVATSGIGEARDTWENQR 78
            L++  +    ++ D+ CG G                +  G++++   +  AR      +
Sbjct: 32  DLVRSRTPEASSLLDVACGTGTH-----LEHFTKEFGDTAGLELSEDMLTHAR------K 80

Query: 79  KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138
           +   A   + D    +F         +   V          +T E     + + +  L+P
Sbjct: 81  RLPDATLHQGD--MRDFRLG-----RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEP 133

Query: 139 GGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV---ITFEVEEEKF 195
           GG  +         +A    + +       ++    V + +R  +     + F V +   
Sbjct: 134 GGVVVVEPWWFPETFADGWVSADVVRRDGRTVA--RVSHSVREGNATRMEVHFTVADP-- 189

Query: 196 PLFGKKYQLKFANDISAETQCLVHFPS--LIRLAREAGLEYVEI 237
              GK  +        ++   +  F           AGL    +
Sbjct: 190 ---GKGVR------HFSDVHLITLFHQAEYEAAFTAAGLRVEYL 224

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 26/229 (11%)

Query: 30  HPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRKNFIAEF 85
           H    V D+ CG GVD     + ++         +D +   +  A     N+RK    + 
Sbjct: 56  HGCHRVLDVACGTGVD-----SIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDK 110

Query: 86  FEADPCAENFETQMQEKANQADLVCC----FQHLQMCFETEERARRLLQNVSSLLKPGGY 141
           +  +        +     +  D V C    F HL      +   R  L+N++S+++PGG 
Sbjct: 111 WVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGL 170

Query: 142 FL--GITPDS--STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPL 197
            +      D   ST  A   KN+    + +  +  +++    ++    + + V+      
Sbjct: 171 LVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGR 230

Query: 198 FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
            G     KF       +       S   L +EA     +         D
Sbjct: 231 DGAPGFSKF-----RLSYYPHCLASFTELVQEAFGGRCQH----SVLGD 270

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 32/228 (14%), Positives = 61/228 (26%), Gaps = 48/228 (21%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA---NYIGIDVATSGIGEARDTWENQRK 79
           AL++ +S    ++ D+ CG G+ +      L        G++++   +  AR      R+
Sbjct: 42  ALVRRHSPKAASLLDVACGTGMHL----RHLADSFGTVEGLELSADMLAIAR------RR 91

Query: 80  NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG 139
           N  A     D    +F         +   V C          +      L+  ++ + P 
Sbjct: 92  NPDAVLHHGD--MRDFSLG-----RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPD 144

Query: 140 GYFL--------GITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191
           G  +          TP                    SS +              + + V 
Sbjct: 145 GVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEAT-------RIEVHYLVA 197

Query: 192 EEKFPLFGKKYQLKFANDISAETQCLVHFPS--LIRLAREAGLEYVEI 237
                   +            E+  +  F      R    AGL    +
Sbjct: 198 GP-----DRGIT------HHEESHRITLFTREQYERAFTAAGLSVEFM 234

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 25/146 (17%)

Query: 4   LPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA------NY 57
               +        Y    +  I         + DL  G G       +A +        +
Sbjct: 19  EQRRKFIPCFDDFYG--VSVSIASVDTENPDILDLGAGTG-----LLSAFLMEKYPEATF 71

Query: 58  IGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQM 117
             +D++   +  A++ +    K    ++ EAD    +FE        + D+V     +  
Sbjct: 72  TLVDMSEKMLEIAKNRFRGNLK---VKYIEADYSKYDFE-------EKYDMVVSALSIH- 120

Query: 118 CFETEERARRLLQNVSSLLKPGGYFL 143
               +E  + L +   S+LK  G F+
Sbjct: 121 -HLEDEDKKELYKRSYSILKESGIFI 145

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 37/244 (15%), Positives = 61/244 (25%), Gaps = 46/244 (18%)

Query: 5   PIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY--IGIDV 62
            +P    T  R   F +     +   P   V  + CG   ++   + +       +GID 
Sbjct: 94  RLPAVLATRERHGHFRRALQRHL--RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDY 151

Query: 63  ATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETE 122
               +  A                  D  A   +T         DL+          + +
Sbjct: 152 DPEALDGATRLAAGHALAGQITLHRQD--AWKLDT-----REGYDLLTSNGLNIYEPD-D 203

Query: 123 ERARRLLQNVSSLLKPGGYFL--GITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
            R   L +     LKPGG  +   +TP                            P  + 
Sbjct: 204 ARVTELYRRFWQALKPGGALVTSFLTP----------------------------PPALS 235

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
            +S      ++     L     QL F   I      L           EAG   +  ++ 
Sbjct: 236 PDSPWDMQAIDPHDLQL----QQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDD 291

Query: 241 NEFY 244
               
Sbjct: 292 RARL 295

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 29/246 (11%), Positives = 57/246 (23%), Gaps = 53/246 (21%)

Query: 10  ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCG----------AGVDVDKWETALIANYIG 59
           +L                       V +L  G           G +V             
Sbjct: 61  DLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEV-----------TA 109

Query: 60  IDVATSGIGEARD--TWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC----FQ 113
           ++++TS +   R                 + D     F         +   V        
Sbjct: 110 LELSTSVLAAFRKRLAEAPADVRDRCTLVQGD--MSAFALD-----KRFGTVVISSGSIN 162

Query: 114 HLQMCFETEERARRLLQNVSSLLKPGGYFL--GITPDSSTIWAKYQKNVEAYHNRSSSMK 171
            L      E   R L  +V   L+PGG FL      +++      +K      +    + 
Sbjct: 163 EL-----DEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVL 217

Query: 172 PNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAG 231
                     +   I    E     +            +    + L+    ++R    +G
Sbjct: 218 HVRHLPAEEIQEITIHPADETTDPFV------------VCTHRRRLLAPDQVVRELVRSG 265

Query: 232 LEYVEI 237
            + +  
Sbjct: 266 FDVIAQ 271

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 20/127 (15%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQR 78
              ++  +P + + D  CG G       T  ++ +    IG+DV+ S +  A        
Sbjct: 48  PRFELLFNPELPLIDFACGNGTQ-----TKFLSQFFPRVIGLDVSKSALEIAAKENTAAN 102

Query: 79  KNFIAEFFEADPCAENFETQMQEKANQADLVCC--FQHLQMCFETEERARRLLQNVSSLL 136
                 +   D        Q+  +   A++     F H+       E+   L Q++  LL
Sbjct: 103 ----ISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHI-----PVEKRELLGQSLRILL 153

Query: 137 KPGGYFL 143
              G   
Sbjct: 154 GKQGAMY 160

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 22/114 (19%)

Query: 34  TVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRKNFIAEFFEAD 89
            + D  CG G          ++      +G D+    I  A+  +        A +   D
Sbjct: 49  KILDAGCGQGRI-----GGYLSKQGHDVLGTDLDPILIDYAKQDFPE------ARWVVGD 97

Query: 90  PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
              +             DL+    ++      + R    L N+   L   G  +
Sbjct: 98  LSVDQIS------ETDFDLIVSAGNVMGFLAEDGR-EPALANIHRALGADGRAV 144

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 20/149 (13%)

Query: 7   PRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDK-WETALIANYIGIDVATS 65
            +  L   R        L          V DL CG G  +    +        G+DV+ S
Sbjct: 9   KKLNLNQQR-LGTVVAVLKS---VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYS 64

Query: 66  GIGEAR-----DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
            +  A+     D     ++  I   F++            ++ +  D     + ++    
Sbjct: 65  VLERAKDRLKIDRLPEMQRKRI-SLFQSS------LVYRDKRFSGYDAATVIEVIEHL-- 115

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDS 149
            E R +   + +    +P    +  TP+ 
Sbjct: 116 DENRLQAFEKVLFEFTRPQTVIV-STPNK 143

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 6/116 (5%)

Query: 51  TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQADL 108
             +  N   ++ +   I + ++           +F      +  ++++M E  +  + D 
Sbjct: 79  PGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDF 138

Query: 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYH 164
           +   Q         +     L+   SLL      L I    S+ W K  K   +  
Sbjct: 139 IHMIQ----MLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRF 190

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 22/118 (18%)

Query: 31  PYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVATSGIGEARDTWENQRK-NFIAEF 85
                 ++ C AG       T  +A        IDV    IG A    +     ++ A  
Sbjct: 51  AVSNGLEIGCAAGAF-----TEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATD 105

Query: 86  FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
                 AE F           DL+   + L    E   + R  + N+  +L PGG+ +
Sbjct: 106 ILQFSTAELF-----------DLIVVAEVLY-YLEDMTQMRTAIDNMVKMLAPGGHLV 151

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI 82
            L+   S P        CG G DV     +     +G+D++ S + +A +T+ +  K   
Sbjct: 58  HLVDTSSLPLGRALVPGCGGGHDVV-AMASPERFVVGLDISESALAKANETYGSSPKAEY 116

Query: 83  AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142
             F + D                 DL+    ++  C    E      +++  LLKP G  
Sbjct: 117 FSFVKEDVFTW-------RPTELFDLIFD--YVFFCAIEPEMRPAWAKSMYELLKPDGEL 167

Query: 143 LGIT 146
           + + 
Sbjct: 168 ITLM 171

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 5e-05
 Identities = 40/274 (14%), Positives = 79/274 (28%), Gaps = 80/274 (29%)

Query: 4   LPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVA 63
             + R +  + +L    + AL+++     V +  +  G+G    K  T +       DV 
Sbjct: 129 YNVSRLQP-YLKL----RQALLELRPAKNVLIDGVL-GSG----K--TWVAL-----DV- 170

Query: 64  TSGIGEARDTWENQRKNF------IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQM 117
                         + +F      +      +   E     +Q+   Q D     +    
Sbjct: 171 ------CLSYKVQCKMDFKIFWLNLKNCNSPETVLE----MLQKLLYQIDPNWTSRSDHS 220

Query: 118 C------FETEERARRLLQN---VSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHN--- 165
                     +   RRLL++    + LL        +  +   +     K   A++    
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLL--------VLLN---VQNA--KAWNAFNLSCK 267

Query: 166 -----RSSSMKPNLVPNC---IRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCL 217
                R   +   L       I  + + +T    +E   L  K    +   D+  E    
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCR-PQDLPREV-LT 324

Query: 218 VHFP---SLI------RLAREAGLEYVEIQNLNE 242
            + P   S+I       LA     ++V    L  
Sbjct: 325 TN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 43.3 bits (101), Expect = 5e-05
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 9/133 (6%)

Query: 17  YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKW--ETALIANYIGIDVATSGIGEARDTW 74
            E+A   + +       T+ D  CG+G  +D        +   IG+D++  G+  A    
Sbjct: 710 VEYALKHIRE---SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKML 766

Query: 75  ENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS 134
             +          A     +   +   + +  D+  C + ++     E++A    + V S
Sbjct: 767 HVKLNKEACNVKSATLYDGSIL-EFDSRLHDVDIGTCLEVIEHM--EEDQACEFGEKVLS 823

Query: 135 LLKPGGYFLGITP 147
           L  P    +  TP
Sbjct: 824 LFHPKLLIVS-TP 835

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Length = 289

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 14/69 (20%), Positives = 25/69 (36%)

Query: 75  ENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS 134
           E Q +  +      D                AD +     L+         +R L ++++
Sbjct: 144 ERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITT 203

Query: 135 LLKPGGYFL 143
           LL+PGG+ L
Sbjct: 204 LLRPGGHLL 212

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 23/184 (12%)

Query: 24  LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRK 79
           L+  Y      V DL CG G       + L+ +Y    +G+D++   I +AR+  +++  
Sbjct: 31  LLMKYMKKRGKVLDLACGVGGF-----SFLLEDYGFEVVGVDISEDMIRKAREYAKSRES 85

Query: 80  NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG 139
           N   EF   D  A         +    D V     +           ++ + V  +LKP 
Sbjct: 86  N--VEFIVGD--ARKLS----FEDKTFDYVIFIDSI--VHFEPLELNQVFKEVRRVLKPS 135

Query: 140 GYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFG 199
           G F+    D   +  + ++++        S     V       + VI F+ E++ F +  
Sbjct: 136 GKFIMYFTDLRELLPRLKESLVVGQKYWIS----KVIPDQEERTVVIEFKSEQDSFRVRF 191

Query: 200 KKYQ 203
             + 
Sbjct: 192 NVWG 195

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 25/157 (15%), Positives = 41/157 (26%), Gaps = 13/157 (8%)

Query: 14  HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY-------IGIDVATSG 66
                 +    IK++     TV D  CG G D     TA +A+         G D+    
Sbjct: 6   KNSLGQSHD-YIKMFVKEGDTVVDATCGNGND-----TAFLASLVGENGRVFGFDIQDKA 59

Query: 67  IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERAR 126
           I        +          +      +       KA   +L              E   
Sbjct: 60  IANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTI 119

Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAY 163
           + L     LL  GG    +         + ++ V  +
Sbjct: 120 QALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEF 156

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 41.8 bits (98), Expect = 8e-05
 Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 9/134 (6%)

Query: 17  YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKW-ETALIANYIGIDVATSGIGEARDTWE 75
                 AL +        V DL CG G  +    + +      G+DV+   +  A++  +
Sbjct: 18  MNGVVAALKQ---SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLD 74

Query: 76  NQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL 135
             R       +E     +   T   ++ +  D     + ++       R     + +   
Sbjct: 75  --RLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHL--DLSRLGAFERVLFEF 130

Query: 136 LKPGGYFLGITPDS 149
            +P    +  TP+ 
Sbjct: 131 AQPKIVIVT-TPNI 143

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 30/166 (18%)

Query: 8   RSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVA 63
             ++ +  ++   +  L  + +  +  V +   G G       T  +        GI+ +
Sbjct: 22  GEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGN-----LTNKLLLAGRTVYGIEPS 76

Query: 64  TSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC---FQHLQMCFE 120
                 A+   E   K F     E D    +FE          D +     F HL     
Sbjct: 77  REMRMIAK---EKLPKEF--SITEGD--FLSFEV-----PTSIDTIVSTYAFHHL----- 119

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNR 166
           T++     +   S LL  GG  +      +     Y K VEA   R
Sbjct: 120 TDDEKNVAIAKYSQLLNKGGKIVFADTIFAD-QDAYDKTVEAAKQR 164

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 30/129 (23%), Positives = 41/129 (31%), Gaps = 26/129 (20%)

Query: 30  HPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRKNFIAEF 85
            P   + DL CG G       T  IA      +G D A + I +AR  + +        F
Sbjct: 56  QPGEFILDLGCGTG-----QLTEKIAQSGAEVLGTDNAATMIEKARQNYPH------LHF 104

Query: 86  FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145
             AD  A NF           D V     L       +     + ++   LK GG F+  
Sbjct: 105 DVAD--ARNFRV-----DKPLDAVFSNAMLHWV----KEPEAAIASIHQALKSGGRFVAE 153

Query: 146 TPDSSTIWA 154
                 I  
Sbjct: 154 FGGKGNIKY 162

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 20/135 (14%), Positives = 38/135 (28%), Gaps = 23/135 (17%)

Query: 14  HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDT 73
               E      +     P   V +  CG G D  ++     A +   D +   +  AR  
Sbjct: 31  GPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARF-GPQAARWAAYDFSPELLKLARAN 89

Query: 74  WENQRKNFIAEFFEADPCAEN-FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNV 132
             +      A+ +E +   E               L+   +              ++  +
Sbjct: 90  APH------ADVYEWNGKGELPAGL-----GAPFGLIVSRRG----------PTSVILRL 128

Query: 133 SSLLKPGGYFLGITP 147
             L  P  +FL + P
Sbjct: 129 PELAAPDAHFLYVGP 143

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 17/134 (12%)

Query: 14  HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGE 69
            R    +    +         V D   G G D     TA +A         DV    +G+
Sbjct: 6   KRPIHMSHD-FLAEVLDDESIVVDATMGNGND-----TAFLAGLSKKVYAFDVQEQALGK 59

Query: 70  ARD-TWENQRKNFIAEFFEADPCAENFETQMQEKANQA--DLVCCFQHLQMCFETEERAR 126
                 +   +N   E        EN +  ++E    A  +L       +          
Sbjct: 60  TSQRLSDLGIENT--ELILD--GHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTL 115

Query: 127 RLLQNVSSLLKPGG 140
             ++ +   L+ GG
Sbjct: 116 EAIEKILDRLEVGG 129

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 20/114 (17%), Positives = 32/114 (28%), Gaps = 25/114 (21%)

Query: 34  TVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRKNFIAEFFEAD 89
            + +L CGAG          +          D +     EA        +      F   
Sbjct: 46  KILELGCGAGYQ-----AEAMLAAGFDVDATDGSPELAAEAS---RRLGRPVRTMLFHQL 97

Query: 90  PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
              + +           D V     L +    +E    +L+ +   LKPGG F 
Sbjct: 98  DAIDAY-----------DAVWAHACL-LHVPRDEL-ADVLKLIWRALKPGGLFY 138

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 29/154 (18%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
            HR    ++   +K    P     ++  G G          +   IG++ +      AR 
Sbjct: 30  VHRFAYLSELQAVKCLL-PEGRGVEIGVGTGRF-----AVPLKIKIGVEPSERMAEIAR- 82

Query: 73  TWENQRKNFIAEFFEADPCAEN--FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQ 130
                ++       +    AEN   +          D               +   R L+
Sbjct: 83  -----KRG--VFVLKGT--AENLPLK------DESFDFALMV----TTICFVDDPERALK 123

Query: 131 NVSSLLKPGGYFLGITPDSSTIWAK-YQKNVEAY 163
               +LK GGY +    D  +   + Y+KN E  
Sbjct: 124 EAYRILKKGGYLIVGIVDRESFLGREYEKNKEKS 157

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 20/113 (17%)

Query: 34  TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93
            + DL CG G           +  +G+D++   +  AR    +        +  AD    
Sbjct: 46  RIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTG----ITYERADLDKL 101

Query: 94  NFETQMQEKANQADLVCC---FQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
           +         +  DL        ++       E   RL + V   L PGG+F+
Sbjct: 102 HLP------QDSFDLAYSSLALHYV-------EDVARLFRTVHQALSPGGHFV 141

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 25/148 (16%), Positives = 40/148 (27%), Gaps = 24/148 (16%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNF 81
            L +        V D+ CG G     +  AL      G+DV+   I  A   +       
Sbjct: 77  QLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ----- 131

Query: 82  IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGY 141
              F  A      F           D +          E           ++ ++KPGG+
Sbjct: 132 -VTFCVASSHRLPFSDT------SMDAIIRIYAPCKAEE-----------LARVVKPGGW 173

Query: 142 FLGITPDSSTIWAKYQKNVEAYHNRSSS 169
            +  TP    +           H  +  
Sbjct: 174 VITATPGPRHLMELKGLIYNEVHLHAPH 201

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 13/128 (10%)

Query: 16  LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE 75
           LY F K        +   TV D   G  +              GI+++   + +A +   
Sbjct: 11  LYRFLKYCNES---NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAEN--F 65

Query: 76  NQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL 135
           ++  NF     + D     F+            V  +  +      +   +  +  +  +
Sbjct: 66  SRENNFKLNISKGDIRKLPFK------DESMSFVYSYGTI--FHMRKNDVKEAIDEIKRV 117

Query: 136 LKPGGYFL 143
           LKPGG   
Sbjct: 118 LKPGGLAC 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.98
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.96
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.96
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.85
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.83
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.8
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.8
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.79
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.79
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.78
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.78
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.77
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.77
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.77
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.77
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.77
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.77
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.77
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.77
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.77
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.77
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.77
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.77
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.77
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.76
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.76
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.76
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.76
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.76
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.76
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.76
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.76
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.75
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.75
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.75
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.74
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.74
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.74
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.74
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.73
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.73
3ocj_A	305	Putative exported protein; structural genomics, PS	99.73
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.73
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.73
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.72
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.72
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.72
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.71
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.71
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.71
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.71
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.71
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.71
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.7
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.7
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.7
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.7
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.7
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.7
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.69
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.69
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.69
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.69
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.69
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.68
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.68
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.68
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.68
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.68
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.67
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.66
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.66
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.65
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.65
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.64
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.64
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.64
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.64
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.63
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.63
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.62
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.62
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.62
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.61
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.61
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.61
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.61
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.61
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.61
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.61
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.6
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.6
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.6
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.6
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.6
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.6
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.59
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.59
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.59
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.59
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.58
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.58
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.58
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.58
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.58
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.58
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.58
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.57
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.57
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.57
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.57
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.57
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.56
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.56
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.56
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.55
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.55
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.55
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.55
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.55
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.55
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.54
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.54
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.54
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.54
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.54
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.53
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.53
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.52
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.52
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.52
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.51
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.51
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.5
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.5
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.5
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.5
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.5
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.5
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.5
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.5
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.49
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.49
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.49
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.49
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.48
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.48
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.48
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.47
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.47
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.47
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.47
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.47
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.47
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.47
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.47
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.46
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.46
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.46
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.46
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.46
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.46
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.46
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.46
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.46
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.46
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.45
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.45
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.45
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.44
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.44
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.44
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.44
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.43
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.43
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.43
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.43
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.43
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.42
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.42
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.42
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.42
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.42
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.41
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.41
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.41
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.41
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.4
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.4
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.4
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.39
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.39
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.38
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.38
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.38
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.38
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.38
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.38
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.37
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.37
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.37
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.37
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.36
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.35
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.35
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.35
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.34
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.34
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.34
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.33
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.33
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.33
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.33
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.33
2o07_A	304	Spermidine synthase; structural genomics, structur	99.33
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.32
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.32
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.32
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.31
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.31
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.31
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.31
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.31
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.31
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.3
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.3
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.3
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.3
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.3
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.29
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.28
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.27
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.27
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.27
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.25
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.25
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.24
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.23
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.23
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.22
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.2
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.19
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.18
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.16
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.15
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.14
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.13
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.13
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.12
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.12
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.12
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.11
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.09
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.07
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.03
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.01
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.01
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.99
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.98
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.98
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.97
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.95
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.95
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.9
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.83
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.83
3khk_A	544	Type I restriction-modification system methylation	98.82
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.82
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.81
3lkd_A	542	Type I restriction-modification system methyltrans	98.78
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.76
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.76
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.75
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.73
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.73
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.7
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.67
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.66
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.64
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.6
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.6
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.58
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.54
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.52
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.43
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.34
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.29
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.26
3ufb_A	530	Type I restriction-modification system methyltran	98.24
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.2
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.19
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.18
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.15
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.13
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.05
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.91
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.8
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.64
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.59
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.54
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.5
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.48
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.11
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.71
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.58
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.39
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.26
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.17
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.03
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.88
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	95.79
2oo3_A	283	Protein involved in catabolism of external DNA; st	95.79
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	95.75
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.71
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.6
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.49
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.35
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.22
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.19
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	94.58
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.42
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	94.11
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.07
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	93.76
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	93.74
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.73
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	93.71
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	93.57
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	93.53
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	93.53
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	93.49
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	93.48
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.39
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	93.06
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	92.93
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	92.92
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	92.89
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	92.89
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	92.84
3me5_A	482	Cytosine-specific methyltransferase; structural ge	92.59
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.58
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	92.56
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	92.51
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	92.46
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	92.42
3gms_A	340	Putative NADPH:quinone reductase; structural genom	92.21
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	92.08
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	91.99
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	91.77
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	91.65
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	91.6
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	91.54
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	91.5
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	91.36
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	91.33
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	91.09
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	90.9
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	90.84
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	90.7
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	90.48
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	90.31
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	90.3
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	90.22
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	90.15
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	90.14
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	89.8
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	89.71
4eye_A	342	Probable oxidoreductase; structural genomics, niai	89.67
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	89.67
3c85_A	183	Putative glutathione-regulated potassium-efflux S	89.62
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	89.41
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	89.37
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	89.36
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	89.33
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	89.31
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.21
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	89.15
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	89.14
2zig_A	297	TTHA0409, putative modification methylase; methylt	88.85
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	88.84
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	88.57
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	88.35
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	87.83
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	87.79
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	87.64
1id1_A	153	Putative potassium channel protein; RCK domain, E.	87.56
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	87.43
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	87.38
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	87.03
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	86.82
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	86.81
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	86.71
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	86.66
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	86.62
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	86.53
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	86.21
1ej6_A	1289	Lambda2; icosahedral, non-equivalence, dsRNA virus	85.85
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	85.67
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	85.39
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	85.39
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	85.08
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	85.03
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	84.85
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	84.77
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	84.69
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	84.54
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	84.39
4g65_A	461	TRK system potassium uptake protein TRKA; structur	83.83
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	83.78
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	83.47
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	83.35
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	83.15
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	83.03
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	82.87
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	82.55
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	82.47
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	82.02
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	81.95
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	81.61
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	81.61
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	81.44
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	81.1
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	80.84
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	80.76
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	80.71
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	80.59
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	80.57
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	80.54
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	80.16

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.98  E-value=6.3e-32  Score=233.61  Aligned_cols=228  Identities=17%  Similarity=0.248  Sum_probs=167.0

Q ss_pred             CccCCCCCcchHHhHHHHHHHHHHHHhcCC-------CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHH
Q 025059            2 SVLPIPRSELTHHRLYEFAKTALIKIYSHP-------YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW   74 (258)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~k~~li~~~~~~-------~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~   74 (258)
                      +||+..|+++|++.++||+++.+++.+++.       +.+|||||||+|.++..++..+..+|+|+|+|+.||+.|++++
T Consensus        12 ~~f~~~r~~~~~~~~nn~vks~li~~~~~~~~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~   91 (302)
T 2vdw_A           12 SYFTNKRTRGPLGILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERY   91 (302)
T ss_dssp             CCBCSSCCCHHHHHHHHHHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHH
T ss_pred             chhccccccchHHHHHHHHHHHHHHHHHhhhhhccCCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHH
Confidence            689999999999999999999999998763       7899999999999998887777679999999999999999998


Q ss_pred             HhcCCC-----ceeEEEEcCCCCCchhhhhh--hcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059           75 ENQRKN-----FIAEFFEADPCAENFETQMQ--EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus        75 ~~~~~~-----~~~~~~~~d~~~~~~~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ...+..     +.+.|.+.|+....+...++  .++++||+|+|++++||++.+. +...++++++++|||||+|++++|
T Consensus        92 ~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~-~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A           92 NKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPR-HYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             HHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTT-THHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HhccccccccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHH-HHHHHHHHHHHHcCCCCEEEEEeC
Confidence            765321     13678899886544322221  1457999999999999977654 457999999999999999999999


Q ss_pred             CchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEecccCCCCCCceeceE-EEEcc-CccCCCccccchHHHHH
Q 025059          148 DSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQ-LKFAN-DISAETQCLVHFPSLIR  225 (258)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~-~~l~~-~~~~~~e~lv~~~~l~~  225 (258)
                      +...+...+.+.       +  .  .++++.+..+.|. .+.       .++..+. .+... ...++++|++++++|++
T Consensus       171 ~~~~~~~~~~~~-------~--~--~i~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~e~~v~~~el~~  231 (302)
T 2vdw_A          171 DGDKLSKLTDKK-------T--F--IIHKNLPSSENYM-SVE-------KIADDRIVVYNPSTMSTPMTEYIIKKNDIVR  231 (302)
T ss_dssp             CHHHHTTCCSCE-------E--E--ECCSSSCTTTSEE-EEC-------EEETTEEEEBCTTTBSSCEEEECCCHHHHHH
T ss_pred             CHHHHHHHHhcC-------C--c--cccccccccccee-eec-------cccccccceeeccccCCCceeeeeEHHHHHH
Confidence            987664322100       0  0  0112211111111 000       0000110 11112 24467789999999999


Q ss_pred             HHHHcCcEEEEeCChhHHHHhccC
Q 025059          226 LAREAGLEYVEIQNLNEFYDDNRH  249 (258)
Q Consensus       226 ~~~~~Gf~~~~~~~f~~~~~~~~~  249 (258)
                      +++++||++++..+|.++|+++++
T Consensus       232 l~~~~Gl~lv~~~~f~~~~~~~~~  255 (302)
T 2vdw_A          232 VFNEYGFVLVDNVDFATIIERSKK  255 (302)
T ss_dssp             HHHHTTEEEEEEEEHHHHHHHHHH
T ss_pred             HHHHCCCEEEEecChHHHHHHHHH
Confidence            999999999999999999999875

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.96  E-value=1.7e-28  Score=212.95  Aligned_cols=224  Identities=28%  Similarity=0.498  Sum_probs=175.6

Q ss_pred             CcchHH-hHHHHHHHHHHHHhcC-------CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC--
Q 025059            9 SELTHH-RLYEFAKTALIKIYSH-------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR--   78 (258)
Q Consensus         9 ~~~~~~-~~~~~~k~~li~~~~~-------~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--   78 (258)
                      |+.... .++||+++.++..++.       ++.+|||+|||+|.++..++..+..+++|+|+|+.|++.|+++.....  
T Consensus         4 s~i~~lr~~~~~~k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~   83 (313)
T 3bgv_A            4 SRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNR   83 (313)
T ss_dssp             -CTHHHHHHHHHHHHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSS
T ss_pred             CcchhhhhccHHHHHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhc
Confidence            444444 4789999998887754       778999999999999999988766799999999999999999886531  


Q ss_pred             ----CCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHH
Q 025059           79 ----KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (258)
Q Consensus        79 ----~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~  154 (258)
                          ...++.++++|+...++.+.++.++++||+|++.+++|+++.+.++...++.++.++|+|||.+++++++...+..
T Consensus        84 ~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~  163 (313)
T 3bgv_A           84 RDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIR  163 (313)
T ss_dssp             SCC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHH
T ss_pred             ccccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHH
Confidence                1236899999998765322222234689999999999997788899999999999999999999999999877665


Q ss_pred             HHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEE
Q 025059          155 KYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEY  234 (258)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~  234 (258)
                      .+.+.      ..     ..+|    +..|++.|... ...+.++..|.|.+... .++++|+++++.+.++++++||++
T Consensus       164 ~~~~~------~~-----~~~~----~~~~~~~f~~~-~~~~~~~~~~~f~l~~~-~~~~~~~~~~~~~~~l~~~~G~~~  226 (313)
T 3bgv_A          164 RLEAS------ET-----ESFG----NEIYTVKFQKK-GDYPLFGCKYDFNLEGV-VDVPEFLVYFPLLNEMAKKYNMKL  226 (313)
T ss_dssp             HHTTS------SS-----SEEE----CSSEEEEESCS-SCCCSSCCEEEEEEC----CCEEECCCHHHHHHHGGGGTEEE
T ss_pred             HHHhh------cc-----CccC----CeeEEEEeCCC-CCCCCccceEEEEECCc-ccCcceEEcHHHHHHHHHHcCcEE
Confidence            54321      00     1233    44688888743 24577889999988543 367899999999999999999999


Q ss_pred             EEeCChhHHHHhccC
Q 025059          235 VEIQNLNEFYDDNRH  249 (258)
Q Consensus       235 ~~~~~f~~~~~~~~~  249 (258)
                      ++..+|.++++++..
T Consensus       227 v~~~~f~~~g~~~~~  241 (313)
T 3bgv_A          227 VYKKTFLEFYEEKIK  241 (313)
T ss_dssp             EEEEEHHHHHHHHTT
T ss_pred             EEecCHHHHHHHhcc
Confidence            999999999998775

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.96  E-value=3.1e-27  Score=202.68  Aligned_cols=212  Identities=26%  Similarity=0.493  Sum_probs=177.8

Q ss_pred             HhHHHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC
Q 025059           14 HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE   93 (258)
Q Consensus        14 ~~~~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~   93 (258)
                      ..+++|++..++..+++++.+|||+|||+|.++..++..+..+++|+|+|+.+++.|+++....+...++.++++|+.+.
T Consensus        47 ~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  126 (298)
T 1ri5_A           47 RNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR  126 (298)
T ss_dssp             HHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc
Confidence            34679999999998999999999999999999999888776699999999999999999998765444789999999776


Q ss_pred             chhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCC
Q 025059           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPN  173 (258)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (258)
                      ++.     ++++||+|++..++|+.+.+.++...+++++.++|+|||.+++++|+...+...+...              
T Consensus       127 ~~~-----~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~--------------  187 (298)
T 1ri5_A          127 HMD-----LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQG--------------  187 (298)
T ss_dssp             CCC-----CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHT--------------
T ss_pred             ccC-----CCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccC--------------
Confidence            541     3678999999999998778899999999999999999999999999987776655421              


Q ss_pred             CCCCcccCeeEEEEecccCCCCCC-ceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChhHHHHhccC
Q 025059          174 LVPNCIRSESYVITFEVEEEKFPL-FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRH  249 (258)
Q Consensus       174 ~~g~~~~~~~~~i~f~~~~~~~~~-~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~~~~~~~~  249 (258)
                      .++    +..|++.|+... ..|. +|..|.+++.+.+....+++++++++.++++++||++++...|..+|.....
T Consensus       188 ~~~----~~~~~~~~~~~~-~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~~~~~~~~~  259 (298)
T 1ri5_A          188 RMS----NDFYKIELEKME-DVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEGR  259 (298)
T ss_dssp             CCB----CSSEEEECCCCS-SCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHHHHHHHHHH
T ss_pred             ccC----CeeEEEEeCccc-cccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecCHHHHHHHHHH
Confidence            233    345777776432 3344 8888999888877667788999999999999999999999999999988653

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.85  E-value=1.9e-20  Score=158.44  Aligned_cols=114  Identities=21%  Similarity=0.226  Sum_probs=98.8

Q ss_pred             HHHHHHhcCCCCEEEEEcCCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh
Q 025059           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (258)
Q Consensus        22 ~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   98 (258)
                      ..++..+++|+.+|||||||+|..+..+++.   ...+|+|+|+|+.|++.|++++...+...+++++++|+.+.++   
T Consensus        61 ~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~---  137 (261)
T 4gek_A           61 GMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI---  137 (261)
T ss_dssp             HHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC---
T ss_pred             HHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc---
Confidence            3566778899999999999999999988875   2348999999999999999999877666689999999977554   


Q ss_pred             hhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                           +.||+|++.+++|+  .+.++...+++++.++|||||.|++.
T Consensus       138 -----~~~d~v~~~~~l~~--~~~~~~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          138 -----ENASMVVLNFTLQF--LEPSERQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             -----CSEEEEEEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----cccccceeeeeeee--cCchhHhHHHHHHHHHcCCCcEEEEE
Confidence                 56999999999997  45677788999999999999999987

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.83  E-value=6.6e-20  Score=155.08  Aligned_cols=141  Identities=16%  Similarity=0.131  Sum_probs=106.0

Q ss_pred             ccCCCCCcchHHhHHHHHHHHHHHHh---cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCC
Q 025059            3 VLPIPRSELTHHRLYEFAKTALIKIY---SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK   79 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~k~~li~~~---~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~   79 (258)
                      +|..+|+..+...+.+|....+-+.+   ..++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|++++.....
T Consensus        24 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~  103 (263)
T 2a14_A           24 YYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPG  103 (263)
T ss_dssp             HCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTT
T ss_pred             hcCCCcccchhhHHHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCC
Confidence            45555555555557788876665544   236789999999999887776666666899999999999999987654311


Q ss_pred             C----------------------------ceeE-EEEcCCCCC-chhhhhhhcCCceeEEEeccccccccCCHHHHHHHH
Q 025059           80 N----------------------------FIAE-FFEADPCAE-NFETQMQEKANQADLVCCFQHLQMCFETEERARRLL  129 (258)
Q Consensus        80 ~----------------------------~~~~-~~~~d~~~~-~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l  129 (258)
                      .                            .++. ++++|+.+. ++.+.   ..++||+|++.+++|++..+.++...++
T Consensus       104 ~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~---~~~~fD~V~~~~~l~~i~~~~~~~~~~l  180 (263)
T 2a14_A          104 AYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPA---VLPLADCVLTLLAMECACCSLDAYRAAL  180 (263)
T ss_dssp             CCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTC---CCCCEEEEEEESCHHHHCSSHHHHHHHH
T ss_pred             cccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCcc---ccCCCCEeeehHHHHHhcCCHHHHHHHH
Confidence            0                            0233 889998763 22100   2568999999999998767778899999


Q ss_pred             HHHHhcccCCcEEEEEE
Q 025059          130 QNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       130 ~~i~~~LkpgG~~i~~~  146 (258)
                      +++.++|||||.|+++.
T Consensus       181 ~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          181 CNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             HHHHTTEEEEEEEEEEE
T ss_pred             HHHHHHcCCCcEEEEEE
Confidence            99999999999999984

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.80  E-value=6.3e-19  Score=145.46  Aligned_cols=117  Identities=21%  Similarity=0.266  Sum_probs=98.4

Q ss_pred             HHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCC----CceeEEEEcCCCCCchhhhhh
Q 025059           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFETQMQ  100 (258)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~  100 (258)
                      +..+++++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++....+.    ..++.+.++|+...++     
T Consensus        24 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----   97 (235)
T 3sm3_A           24 IHNYLQEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF-----   97 (235)
T ss_dssp             HHHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS-----
T ss_pred             HHHhCCCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC-----
Confidence            345567889999999999999999988855 999999999999999998876542    2258999999987665     


Q ss_pred             hcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                       ++++||+|++..++++ +.+......+++++.++|+|||.++++.+..
T Consensus        98 -~~~~~D~v~~~~~l~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (235)
T 3sm3_A           98 -HDSSFDFAVMQAFLTS-VPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ  144 (235)
T ss_dssp             -CTTCEEEEEEESCGGG-CCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             -CCCceeEEEEcchhhc-CCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence             5789999999999887 3456777799999999999999999986654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.80  E-value=1.6e-18  Score=147.80  Aligned_cols=117  Identities=19%  Similarity=0.175  Sum_probs=97.4

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc-hhhhhhhc
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FETQMQEK  102 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~  102 (258)
                      ++.....++.+|||||||+|..+..++..+. +++|+|+|+.+++.|+++....+...++.++++|+.+.+ +      .
T Consensus        61 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~  133 (285)
T 4htf_A           61 VLAEMGPQKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH------L  133 (285)
T ss_dssp             HHHHTCSSCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG------C
T ss_pred             HHHhcCCCCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh------c
Confidence            4444555678999999999999999988755 999999999999999999887655447999999986654 3      5


Q ss_pred             CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~  151 (258)
                      +++||+|++..++++.    ++...+++++.++|+|||.+++..++...
T Consensus       134 ~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  178 (285)
T 4htf_A          134 ETPVDLILFHAVLEWV----ADPRSVLQTLWSVLRPGGVLSLMFYNAHG  178 (285)
T ss_dssp             SSCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEEBHHH
T ss_pred             CCCceEEEECchhhcc----cCHHHHHHHHHHHcCCCeEEEEEEeCCch
Confidence            6899999999998873    33578999999999999999999888754

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.79  E-value=1.2e-17  Score=141.23  Aligned_cols=118  Identities=20%  Similarity=0.229  Sum_probs=97.2

Q ss_pred             HHHHHHHh-cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhh
Q 025059           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (258)
Q Consensus        21 k~~li~~~-~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (258)
                      ...+++.. ..++.+|||||||+|..+..++.....+++|+|+|+.+++.|+++....+...++.+.++|+.+.++    
T Consensus        50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----  125 (273)
T 3bus_A           50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF----  125 (273)
T ss_dssp             HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS----
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC----
Confidence            33444443 3578999999999999999988764569999999999999999998876554479999999987665    


Q ss_pred             hhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                        ++++||+|++..+++++    .+...+++++.++|+|||.++++.+.
T Consensus       126 --~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A          126 --EDASFDAVWALESLHHM----PDRGRALREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             --CTTCEEEEEEESCTTTS----SCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             --CCCCccEEEEechhhhC----CCHHHHHHHHHHHcCCCeEEEEEEee
Confidence              56899999999988873    33578999999999999999998654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.79  E-value=1.5e-19  Score=152.50  Aligned_cols=103  Identities=15%  Similarity=0.160  Sum_probs=87.0

Q ss_pred             HHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      ..+.+.+.+|||||||+|..+..++..+. +|+|+|+|+.|++.|+++       .++.+.++|+.+.++      ++++
T Consensus        34 ~~~~~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~------~~~s   99 (257)
T 4hg2_A           34 GEVAPARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGL------PPAS   99 (257)
T ss_dssp             HHHSSCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCC------CSSC
T ss_pred             HHhcCCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcc------cCCc
Confidence            34556678999999999999999977664 999999999999887542       178999999988877      7899


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ||+|+|..++|+. .    ...++.++.++|||||.|++...
T Consensus       100 fD~v~~~~~~h~~-~----~~~~~~e~~rvLkpgG~l~~~~~  136 (257)
T 4hg2_A          100 VDVAIAAQAMHWF-D----LDRFWAELRRVARPGAVFAAVTY  136 (257)
T ss_dssp             EEEEEECSCCTTC-C----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccEEEEeeehhHh-h----HHHHHHHHHHHcCCCCEEEEEEC
Confidence            9999999999872 3    45789999999999999988744

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.78  E-value=9e-19  Score=150.55  Aligned_cols=119  Identities=18%  Similarity=0.122  Sum_probs=96.4

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCC--ceeEEEEcCCCCCchhhhhhh
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQMQE  101 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~  101 (258)
                      ++.....++.+|||||||+|.++..++..+. +++|+|+|+.+++.|+++....+..  .++.++++|+.+.++      
T Consensus        75 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~------  147 (299)
T 3g2m_A           75 FATRTGPVSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL------  147 (299)
T ss_dssp             HHHHHCCCCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC------
T ss_pred             HHHhhCCCCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc------
Confidence            3444445556999999999999999988765 8999999999999999998765311  268999999977553      


Q ss_pred             cCCceeEEEeccc-cccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059          102 KANQADLVCCFQH-LQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (258)
Q Consensus       102 ~~~~fD~V~~~~~-l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~  152 (258)
                       +++||+|+|.+. +++  .+.++...+++++.++|+|||.+++.+++....
T Consensus       148 -~~~fD~v~~~~~~~~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  196 (299)
T 3g2m_A          148 -DKRFGTVVISSGSINE--LDEADRRGLYASVREHLEPGGKFLLSLAMSEAA  196 (299)
T ss_dssp             -SCCEEEEEECHHHHTT--SCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred             -CCCcCEEEECCccccc--CCHHHHHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence             579999987644 444  456778999999999999999999999888654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.78  E-value=4.1e-18  Score=146.65  Aligned_cols=173  Identities=14%  Similarity=0.129  Sum_probs=122.5

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .+++.+|||||||+|..+..++.. + .+++|+|+|+.+++.|+++....+...++.+.++|+.+  +       +++||
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~-------~~~fD  139 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE--F-------DEPVD  139 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG--C-------CCCCS
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH--c-------CCCcc
Confidence            458899999999999999999887 6 59999999999999999999887665579999999743  2       57899


Q ss_pred             EEEeccccccccC-----CHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCe
Q 025059          108 LVCCFQHLQMCFE-----TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSE  182 (258)
Q Consensus       108 ~V~~~~~l~~~~~-----~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  182 (258)
                      +|++..+++++..     +.+....+++++.++|+|||.+++..+............        .     .+.      
T Consensus       140 ~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~--------~-----~~~------  200 (302)
T 3hem_A          140 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELG--------L-----TSP------  200 (302)
T ss_dssp             EEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHT--------C-----CCC------
T ss_pred             EEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhcc--------c-----ccc------
Confidence            9999999987433     336778999999999999999999865432211110000        0     000      


Q ss_pred             eEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChhHHHH
Q 025059          183 SYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD  245 (258)
Q Consensus       183 ~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~~~~  245 (258)
                           +...  ....|-..|.+        ...++.+.+.+.++++++||+++....+...|.
T Consensus       201 -----~~~~--~~~~~~~~~~~--------p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y~  248 (302)
T 3hem_A          201 -----MSLL--RFIKFILTEIF--------PGGRLPRISQVDYYSSNAGWKVERYHRIGANYV  248 (302)
T ss_dssp             -----HHHH--HHHHHHHHHTC--------TTCCCCCHHHHHHHHHHHTCEEEEEEECGGGHH
T ss_pred             -----cccc--chHHHHHHhcC--------CCCCCCCHHHHHHHHHhCCcEEEEEEeCchhHH
Confidence                 0000  00000001111        112467889999999999999998887766553

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.77  E-value=1.7e-18  Score=140.84  Aligned_cols=109  Identities=15%  Similarity=0.088  Sum_probs=89.1

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC-----------CCceeEEEEcCCCCCchhh
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-----------KNFIAEFFEADPCAENFET   97 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-----------~~~~~~~~~~d~~~~~~~~   97 (258)
                      .+++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++.....           ...++.++++|+.+.++  
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~--   96 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA--   96 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH--
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCc--
Confidence            45789999999999999999988876 99999999999999998864210           01268999999988665  


Q ss_pred             hhhhcC-CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059           98 QMQEKA-NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus        98 ~~~~~~-~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                          .+ ++||+|++..++++  .+.+....+++++.++|||||.+++.+
T Consensus        97 ----~~~~~fD~v~~~~~l~~--l~~~~~~~~l~~~~r~LkpgG~~~l~~  140 (203)
T 1pjz_A           97 ----RDIGHCAAFYDRAAMIA--LPADMRERYVQHLEALMPQACSGLLIT  140 (203)
T ss_dssp             ----HHHHSEEEEEEESCGGG--SCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ----ccCCCEEEEEECcchhh--CCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                23 68999999888876  346677889999999999999855553

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.77  E-value=7e-19  Score=146.25  Aligned_cols=107  Identities=11%  Similarity=0.145  Sum_probs=90.9

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||||||+|..+..++..+. +++|+|+|+.+++.|+++...     ++.++++|+.+. .      ++++||+|+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~------~~~~fD~v~  108 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-Q------LPRRYDNIV  108 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-C------CSSCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-C------cCCcccEEE
Confidence            678999999999999999877765 899999999999999988753     588999998654 2      468999999


Q ss_pred             eccccccccCCHHHHHHHHHHHH-hcccCCcEEEEEEcCchHHHH
Q 025059          111 CFQHLQMCFETEERARRLLQNVS-SLLKPGGYFLGITPDSSTIWA  154 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~-~~LkpgG~~i~~~~~~~~~~~  154 (258)
                      +..+++++    ++...+++++. ++|+|||.++++.|+......
T Consensus       109 ~~~~l~~~----~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~  149 (250)
T 2p7i_A          109 LTHVLEHI----DDPVALLKRINDDWLAEGGRLFLVCPNANAVSR  149 (250)
T ss_dssp             EESCGGGC----SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHH
T ss_pred             EhhHHHhh----cCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHH
Confidence            99999874    23578999999 999999999999998765543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.77  E-value=1.3e-17  Score=140.23  Aligned_cols=107  Identities=17%  Similarity=0.240  Sum_probs=90.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|..+..++.... +++|+|+|+.|++.|+++....+.. ++.+.++|+.+.++      ++++||+
T Consensus        35 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~~------~~~~fD~  106 (260)
T 1vl5_A           35 LKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPF------TDERFHI  106 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCS------CTTCEEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCCC------CCCCEEE
Confidence            34789999999999999988877765 9999999999999999998765433 68999999987666      5789999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |++..++|+.    .+...++.++.++|+|||.++++.+
T Consensus       107 V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A          107 VTCRIAAHHF----PNPASFVSEAYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             EEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEhhhhHhc----CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            9999999874    2457899999999999999999743

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.77  E-value=3.4e-18  Score=143.23  Aligned_cols=105  Identities=18%  Similarity=0.150  Sum_probs=92.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....    ++.+.++|+.+.++      ++++||+|+
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~d~~~~~~------~~~~fD~v~  113 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSP----VVCYEQKAIEDIAI------EPDAYNVVL  113 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCT----TEEEEECCGGGCCC------CTTCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccC----CeEEEEcchhhCCC------CCCCeEEEE
Confidence            78999999999999999998887669999999999999999887622    78999999876554      578999999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +..++++.    ++...+++++.++|+|||.+++++++.
T Consensus       114 ~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~  148 (253)
T 3g5l_A          114 SSLALHYI----ASFDDICKKVYINLKSSGSFIFSVEHP  148 (253)
T ss_dssp             EESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             Echhhhhh----hhHHHHHHHHHHHcCCCcEEEEEeCCC
Confidence            99999874    447889999999999999999998775

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.77  E-value=1.5e-18  Score=144.11  Aligned_cols=110  Identities=21%  Similarity=0.315  Sum_probs=93.1

Q ss_pred             HHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      +..+++++.+|||||||+|..+..++..+. +++|+|+|+.+++.|+++....    ++.++++|+.+.++      +++
T Consensus        47 l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~d~~~~~~------~~~  115 (242)
T 3l8d_A           47 FEQYVKKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEGP----DLSFIKGDLSSLPF------ENE  115 (242)
T ss_dssp             HHHHSCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTCBT----TEEEEECBTTBCSS------CTT
T ss_pred             HHHHcCCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcccC----CceEEEcchhcCCC------CCC
Confidence            344567889999999999999999988765 9999999999999998875322    78999999987665      578


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +||+|++..++++.    ++...+++++.++|+|||.++++.++.
T Consensus       116 ~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~  156 (242)
T 3l8d_A          116 QFEAIMAINSLEWT----EEPLRALNEIKRVLKSDGYACIAILGP  156 (242)
T ss_dssp             CEEEEEEESCTTSS----SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             CccEEEEcChHhhc----cCHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence            99999999988873    346689999999999999999997654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.77  E-value=1.4e-18  Score=140.78  Aligned_cols=143  Identities=14%  Similarity=0.050  Sum_probs=113.2

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      +.+|||+|||+|.++..++..+. +++|+|+|+.|++.|+++..      ++.++++|+.+.++      ++++||+|++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~------~~~~fD~v~~  108 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHP------SVTFHHGTITDLSD------SPKRWAGLLA  108 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCT------TSEEECCCGGGGGG------SCCCEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCC------CCeEEeCccccccc------CCCCeEEEEe
Confidence            78999999999999999988765 89999999999999998743      67899999866554      5789999999


Q ss_pred             ccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEeccc
Q 025059          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE  191 (258)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~~~  191 (258)
                      ..++++.  ..++...+++++.++|+|||.++++.++....                                 -.+.. 
T Consensus       109 ~~~l~~~--~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~---------------------------------~~~~~-  152 (203)
T 3h2b_A          109 WYSLIHM--GPGELPDALVALRMAVEDGGGLLMSFFSGPSL---------------------------------EPMYH-  152 (203)
T ss_dssp             ESSSTTC--CTTTHHHHHHHHHHTEEEEEEEEEEEECCSSC---------------------------------EEECC-
T ss_pred             hhhHhcC--CHHHHHHHHHHHHHHcCCCcEEEEEEccCCch---------------------------------hhhhc-
Confidence            9998873  34568899999999999999999986654210                                 00100 


Q ss_pred             CCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChhH
Q 025059          192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNE  242 (258)
Q Consensus       192 ~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~  242 (258)
                                       .  ....+..+.+.+.++++++||+++....+..
T Consensus       153 -----------------~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  184 (203)
T 3h2b_A          153 -----------------P--VATAYRWPLPELAQALETAGFQVTSSHWDPR  184 (203)
T ss_dssp             -----------------S--SSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred             -----------------h--hhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence                             0  0112456899999999999999998876654

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.77  E-value=1.3e-17  Score=140.95  Aligned_cols=108  Identities=16%  Similarity=0.117  Sum_probs=94.3

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      +++.+|||||||+|..+..++..+..+++|+|+|+.+++.|+++....+...++.++++|+.+.++      ++++||+|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~i  118 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF------RNEELDLI  118 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC------CTTCEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC------CCCCEEEE
Confidence            578999999999999999998886669999999999999999998877654479999999977665      57899999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ++..++++.     +...+++++.++|+|||.+++..+.
T Consensus       119 ~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          119 WSEGAIYNI-----GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             EESSCGGGT-----CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             EEcCCceec-----CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            999999874     3678999999999999999998653

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.77  E-value=1.7e-17  Score=137.75  Aligned_cols=125  Identities=18%  Similarity=0.241  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059           16 LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (258)
Q Consensus        16 ~~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (258)
                      ...++...+ ....+++.+|||+|||+|..+..++..+. +++|+|+|+.|++.|+++....+.  ++.+.++|+.+.++
T Consensus        23 ~~~~~~~~l-~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~   98 (246)
T 1y8c_A           23 WSDFIIEKC-VENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI   98 (246)
T ss_dssp             HHHHHHHHH-HTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC
T ss_pred             HHHHHHHHH-HHhCCCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCc
Confidence            334444443 33334778999999999999999988765 899999999999999999876543  68899999866543


Q ss_pred             hhhhhhcCCceeEEEecc-ccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059           96 ETQMQEKANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (258)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~  152 (258)
                            + ++||+|++.. ++++. .+.++...+++++.++|+|||.+++.+++...+
T Consensus        99 ------~-~~fD~v~~~~~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  148 (246)
T 1y8c_A           99 ------N-RKFDLITCCLDSTNYI-IDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKL  148 (246)
T ss_dssp             ------S-CCEEEEEECTTGGGGC-CSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHH
T ss_pred             ------c-CCceEEEEcCcccccc-CCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHH
Confidence                  3 7899999998 88873 456788999999999999999999998886554

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.77  E-value=1.2e-17  Score=140.00  Aligned_cols=108  Identities=16%  Similarity=0.113  Sum_probs=94.3

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      +++.+|||+|||+|..+..++.....+++|+|+|+.+++.|+++....+...++.++++|+...++      ++++||+|
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~fD~v  118 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF------QNEELDLI  118 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS------CTTCEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC------CCCCEEEE
Confidence            477899999999999999998886669999999999999999999877655469999999977665      57899999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ++..++++.     +...+++++.++|+|||.++++.++
T Consensus       119 ~~~~~l~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          119 WSEGAIYNI-----GFERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             EEESCSCCC-----CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             EecChHhhc-----CHHHHHHHHHHHcCCCcEEEEEEee
Confidence            999998873     3678999999999999999998654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.77  E-value=3.9e-17  Score=139.58  Aligned_cols=121  Identities=21%  Similarity=0.243  Sum_probs=95.1

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCC---CceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK---NFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      .++.+|||||||+|..+..++..+. +++|+|+|+.|++.|+++......   ..++.+..+|+...+  ..+ .++++|
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~-~~~~~f  131 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD--KDV-PAGDGF  131 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH--HHS-CCTTCE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc--ccc-ccCCCe
Confidence            3678999999999999999988876 999999999999999887643221   115678888875533  000 146899


Q ss_pred             eEEEec-cccccccC---CHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHH
Q 025059          107 DLVCCF-QHLQMCFE---TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (258)
Q Consensus       107 D~V~~~-~~l~~~~~---~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~  154 (258)
                      |+|+|. .+++++..   +.+....+++++.++|+|||+++++.++...+..
T Consensus       132 D~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  183 (293)
T 3thr_A          132 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILS  183 (293)
T ss_dssp             EEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHH
T ss_pred             EEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHHhh
Confidence            999998 78887432   2467899999999999999999999999776654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.77  E-value=2.4e-17  Score=140.56  Aligned_cols=111  Identities=17%  Similarity=0.184  Sum_probs=91.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .+++.+|||||||+|..+..++.....+++|+|+|+.+++.|+++....+...++.+.++|+.+  +      + ++||+
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~------~-~~fD~  132 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ--F------D-EPVDR  132 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG--C------C-CCCSE
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh--C------C-CCeeE
Confidence            4578899999999999999888542339999999999999999998876554578999999743  2      3 78999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      |++..+++++  +.++...+++++.++|+|||.+++..+...
T Consensus       133 v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  172 (287)
T 1kpg_A          133 IVSIGAFEHF--GHERYDAFFSLAHRLLPADGVMLLHTITGL  172 (287)
T ss_dssp             EEEESCGGGT--CTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             EEEeCchhhc--ChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence            9999988873  235678899999999999999999876653

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.77  E-value=2.9e-18  Score=139.79  Aligned_cols=119  Identities=15%  Similarity=0.065  Sum_probs=97.7

Q ss_pred             HHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh
Q 025059           21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (258)
Q Consensus        21 k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (258)
                      ...+++....++.+|||+|||+|..+..++.....+++|+|+|+.+++.|+++....+...++.+.++|+.+.++     
T Consensus        33 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----  107 (219)
T 3dlc_A           33 AENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI-----  107 (219)
T ss_dssp             HHHHHHHHCCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS-----
T ss_pred             HHHHHHhcCCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC-----
Confidence            334444444333499999999999999998874459999999999999999998876655579999999987665     


Q ss_pred             hcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                       ++++||+|++..++++.    ++...+++++.++|+|||.+++..+..
T Consensus       108 -~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~  151 (219)
T 3dlc_A          108 -EDNYADLIVSRGSVFFW----EDVATAFREIYRILKSGGKTYIGGGFG  151 (219)
T ss_dssp             -CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             -CcccccEEEECchHhhc----cCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence             57899999999999874    446789999999999999999986554

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.77  E-value=3e-18  Score=146.61  Aligned_cols=128  Identities=16%  Similarity=0.126  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHhc---CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCC--------------
Q 025059           17 YEFAKTALIKIYS---HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK--------------   79 (258)
Q Consensus        17 ~~~~k~~li~~~~---~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--------------   79 (258)
                      ..|....+...+.   .++.+|||||||+|.....++.....+|+|+|+|+.|++.|++++.....              
T Consensus        54 ~~~~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~  133 (289)
T 2g72_A           54 GPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLI  133 (289)
T ss_dssp             HHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHh
Confidence            3444444444432   26789999999999954433333445999999999999999886542110              


Q ss_pred             -C--------------ceeEEEEcCCCC-CchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059           80 -N--------------FIAEFFEADPCA-ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus        80 -~--------------~~~~~~~~d~~~-~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                       +              ..+.++++|+.+ .++... ..++++||+|++.++++++....++...+++++.++|||||.|+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~  212 (289)
T 2g72_A          134 EGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAG-SPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL  212 (289)
T ss_dssp             HCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSS-CSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cCcccchhhhHHHHHhhhceEEecccCCCCCcccc-ccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence             0              015677888876 443110 00356799999999999866667789999999999999999999


Q ss_pred             EE
Q 025059          144 GI  145 (258)
Q Consensus       144 ~~  145 (258)
                      +.
T Consensus       213 ~~  214 (289)
T 2g72_A          213 LI  214 (289)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.76  E-value=8.2e-18  Score=141.75  Aligned_cols=107  Identities=14%  Similarity=0.225  Sum_probs=90.9

Q ss_pred             HHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      +....+++.+|||+|||+|.++..++..+. +++|+|+|+.+++.|+++..      ++.++++|+.+.++       ++
T Consensus        44 l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-------~~  109 (263)
T 3pfg_A           44 VRRHSPKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL-------GR  109 (263)
T ss_dssp             HHHHCTTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC-------SC
T ss_pred             HHhhCCCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc-------cC
Confidence            344556779999999999999999987765 89999999999999998864      57899999977553       57


Q ss_pred             ceeEEEecc-ccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          105 QADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       105 ~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +||+|+|.. ++++ +.+.++...+++++.++|+|||.+++..
T Consensus       110 ~fD~v~~~~~~l~~-~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          110 RFSAVTCMFSSIGH-LAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             CEEEEEECTTGGGG-SCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CcCEEEEcCchhhh-cCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            999999998 8887 3445788899999999999999999973

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.76  E-value=5.4e-18  Score=141.76  Aligned_cols=107  Identities=18%  Similarity=0.154  Sum_probs=92.1

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||||||+|..+..++..+..+++|+|+|+.+++.|+++....   .++.++++|+...++      ++++||+|
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~------~~~~fD~v  162 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATL------PPNTYDLI  162 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCC------CSSCEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCC------CCCCeEEE
Confidence            468899999999999998887776668999999999999999987654   278999999876554      56799999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ++..++++  .+.++...+++++.++|+|||.+++..+
T Consensus       163 ~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          163 VIQWTAIY--LTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEcchhhh--CCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            99999987  3457789999999999999999999865

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.76  E-value=3.3e-17  Score=134.26  Aligned_cols=110  Identities=18%  Similarity=0.215  Sum_probs=90.8

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCc----eeEEEEcCCCCCchhhhhhhcCC
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNF----IAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      .++.+|||+|||+|.++..++.... .+++|+|+|+.+++.|++++...+...    ++.+.++|+...+.      ..+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~  101 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK------RFS  101 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG------GGT
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc------ccC
Confidence            4678999999999999999987643 699999999999999999986554322    68999999866554      467


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +||+|++..++++.  ..+....+++++.++|+|||.++ ++++
T Consensus       102 ~fD~V~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~~i-~~~~  142 (219)
T 3jwg_A          102 GYDAATVIEVIEHL--DENRLQAFEKVLFEFTRPQTVIV-STPN  142 (219)
T ss_dssp             TCSEEEEESCGGGC--CHHHHHHHHHHHHTTTCCSEEEE-EEEB
T ss_pred             CCCEEEEHHHHHhC--CHHHHHHHHHHHHHhhCCCEEEE-Eccc
Confidence            99999999999983  56677899999999999999554 4454

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.76  E-value=7.2e-18  Score=141.75  Aligned_cols=115  Identities=17%  Similarity=0.127  Sum_probs=92.0

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCC----------------------------c
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN----------------------------F   81 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----------------------------~   81 (258)
                      .++.+|||+|||+|..+..++..+..+++|+|+|+.|++.|+++.......                            .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            367899999999999988887766568999999999999999887653210                            0


Q ss_pred             ee-EEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059           82 IA-EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus        82 ~~-~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ++ .+.++|+.+.......  ..++||+|++.++++++..+.++...++.++.++|+|||.+++..
T Consensus       135 ~v~~~~~~d~~~~~~~~~~--~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  198 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGV--SLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD  198 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTC--CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hheeEEEeeeccCCCCCcc--ccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence            26 8999998764321100  237999999999999766668889999999999999999999885

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.76  E-value=1.7e-17  Score=137.27  Aligned_cols=107  Identities=19%  Similarity=0.264  Sum_probs=92.2

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++....+   ++.++++|+.+.++       .++||+
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~-------~~~fD~  112 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF-------EEKYDM  112 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC-------CSCEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC-------CCCceE
Confidence            367899999999999999998873 4599999999999999999986653   78999999977664       389999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++..++++.  +......+++++.++|+|||.+++..+.
T Consensus       113 v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~  150 (234)
T 3dtn_A          113 VVSALSIHHL--EDEDKKELYKRSYSILKESGIFINADLV  150 (234)
T ss_dssp             EEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEeCccccC--CHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            9999999983  5666778999999999999999998644

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.76  E-value=1.8e-18  Score=145.50  Aligned_cols=155  Identities=17%  Similarity=0.222  Sum_probs=119.7

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||+|||+|..+..++.....+++|+|+|+.+++.|+++....   .++.++++|+.+.++      ++++||+|
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~------~~~~fD~v  124 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEF------PENNFDLI  124 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCC------CTTCEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCC------CCCcEEEE
Confidence            477899999999999999998863349999999999999999887654   278999999987665      57899999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH---HHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST---IWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI  186 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i  186 (258)
                      ++..++++  .+.++...+++++.++|+|||.+++..+....   ....+..                            
T Consensus       125 ~~~~~l~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~----------------------------  174 (266)
T 3ujc_A          125 YSRDAILA--LSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKE----------------------------  174 (266)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHH----------------------------
T ss_pred             eHHHHHHh--cChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHH----------------------------
Confidence            99999987  34588999999999999999999998654321   0000000                            


Q ss_pred             EecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChhHHHH
Q 025059          187 TFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD  245 (258)
Q Consensus       187 ~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~~~~  245 (258)
                                     +   +...    ...+.+.+.+.++++++||+.+....+...+.
T Consensus       175 ---------------~---~~~~----~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~  211 (266)
T 3ujc_A          175 ---------------Y---VKQR----KYTLITVEEYADILTACNFKNVVSKDLSDYWN  211 (266)
T ss_dssp             ---------------H---HHHH----TCCCCCHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred             ---------------H---HhcC----CCCCCCHHHHHHHHHHcCCeEEEEEeCCHHHH
Confidence                           0   0000    01246789999999999999998887776554

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.76  E-value=1.1e-17  Score=136.85  Aligned_cols=109  Identities=17%  Similarity=0.161  Sum_probs=92.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..++.+|||+|||+|..+..++...  ..+++|+|+|+.+++.|+++....+.. ++.+.++|+.+.++      ++++|
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~------~~~~f  107 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPL------PDNTV  107 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSS------CSSCE
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCC------CCCCe
Confidence            4578899999999999999998874  359999999999999999998776543 68999999977665      57899


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |+|++..++++.    .+...+++++.++|+|||.++++.+.
T Consensus       108 D~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~  145 (219)
T 3dh0_A          108 DFIFMAFTFHEL----SEPLKFLEELKRVAKPFAYLAIIDWK  145 (219)
T ss_dssp             EEEEEESCGGGC----SSHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEeehhhhhc----CCHHHHHHHHHHHhCCCeEEEEEEec
Confidence            999999999873    34678999999999999999987543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.76  E-value=1.2e-17  Score=136.73  Aligned_cols=105  Identities=16%  Similarity=0.105  Sum_probs=89.8

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++.. .    ++.+.++|+.+.++      + ++||+|
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-~----~~~~~~~d~~~~~~------~-~~fD~v  110 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP-K----EFSITEGDFLSFEV------P-TSIDTI  110 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC-T----TCCEESCCSSSCCC------C-SCCSEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC-C----ceEEEeCChhhcCC------C-CCeEEE
Confidence            4788999999999999999988755 99999999999999998876 1    67899999977655      4 899999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ++..++++  ........+++++.++|+|||.++++.+..
T Consensus       111 ~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          111 VSTYAFHH--LTDDEKNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             EECcchhc--CChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            99999987  344555669999999999999999997654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.75  E-value=2.6e-17  Score=141.11  Aligned_cols=110  Identities=12%  Similarity=0.006  Sum_probs=94.0

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|..+..++.....+++|+|+|+.+++.|+++....+...++.+.++|+.+.++      ++++||+
T Consensus        80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~fD~  153 (297)
T 2o57_A           80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC------EDNSYDF  153 (297)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS------CTTCEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC------CCCCEeE
Confidence            3578999999999999999988762339999999999999999998776554479999999987766      5789999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++..++++.-    +...+++++.++|+|||.++++.+.
T Consensus       154 v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~  189 (297)
T 2o57_A          154 IWSQDAFLHSP----DKLKVFQECARVLKPRGVMAITDPM  189 (297)
T ss_dssp             EEEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEecchhhhcC----CHHHHHHHHHHHcCCCeEEEEEEec
Confidence            99999988742    2688999999999999999998654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.75  E-value=1.8e-17  Score=143.36  Aligned_cols=109  Identities=16%  Similarity=0.117  Sum_probs=94.3

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||+|||+|..+..++.....+++|+|+|+.+++.|+++....+...++.++++|+.+.++      ++++||+|
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~V  189 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF------DKGAVTAS  189 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC------CTTCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC------CCCCEeEE
Confidence            478899999999999999998872348999999999999999999877655579999999987665      57899999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ++..++++. .    ...+++++.++|+|||.+++..+..
T Consensus       190 ~~~~~l~~~-~----~~~~l~~~~~~LkpgG~l~~~~~~~  224 (312)
T 3vc1_A          190 WNNESTMYV-D----LHDLFSEHSRFLKVGGRYVTITGCW  224 (312)
T ss_dssp             EEESCGGGS-C----HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EECCchhhC-C----HHHHHHHHHHHcCCCcEEEEEEccc
Confidence            999999873 2    8899999999999999999886543

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.75  E-value=7.1e-17  Score=133.93  Aligned_cols=115  Identities=17%  Similarity=0.237  Sum_probs=96.0

Q ss_pred             HHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      ...++++.+|||+|||+|..+..++..  .+++|+|+|+.+++.|+++....+  .++.+.++|+.+.++       .++
T Consensus        28 ~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~-------~~~   96 (243)
T 3d2l_A           28 LEQVEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELEL-------PEP   96 (243)
T ss_dssp             HHHSCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCC-------SSC
T ss_pred             HHHcCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCC-------CCC
Confidence            345677899999999999999888776  599999999999999999887653  268999999866543       378


Q ss_pred             eeEEEecc-ccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059          106 ADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (258)
Q Consensus       106 fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~  152 (258)
                      ||+|++.. ++++ +.+.++...+++++.++|+|||.+++.+++...+
T Consensus        97 fD~v~~~~~~~~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  143 (243)
T 3d2l_A           97 VDAITILCDSLNY-LQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKM  143 (243)
T ss_dssp             EEEEEECTTGGGG-CCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred             cCEEEEeCCchhh-cCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHH
Confidence            99999986 7776 3457888999999999999999999998886543

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.74  E-value=1.4e-17  Score=137.94  Aligned_cols=107  Identities=21%  Similarity=0.274  Sum_probs=88.8

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++....+...++.++++|+.+.+       +.++||+|+
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~fD~v~  137 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-------PTELFDLIF  137 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-------CSSCEEEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-------CCCCeeEEE
Confidence            456999999999999988866444 899999999999999999876433347999999997744       356999999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      +..++++.  +.++...+++++.++|+|||.+++...
T Consensus       138 ~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~  172 (235)
T 3lcc_A          138 DYVFFCAI--EPEMRPAWAKSMYELLKPDGELITLMY  172 (235)
T ss_dssp             EESSTTTS--CGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EChhhhcC--CHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence            99988873  455788999999999999999988643

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.74  E-value=5.8e-17  Score=134.85  Aligned_cols=109  Identities=18%  Similarity=0.244  Sum_probs=92.0

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      -..++.+|||+|||+|..+..++.... +++|+|+|+.+++.|+++....+.. ++.+.++|+...++      ++++||
T Consensus        18 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------~~~~fD   89 (239)
T 1xxl_A           18 ECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPF------PDDSFD   89 (239)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCS------CTTCEE
T ss_pred             CcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCC------CCCcEE
Confidence            345789999999999999998877765 9999999999999999988765432 68999999877665      568999


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +|++..++++.    .+...++.++.++|+|||.+++..+.
T Consensus        90 ~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~  126 (239)
T 1xxl_A           90 IITCRYAAHHF----SDVRKAVREVARVLKQDGRFLLVDHY  126 (239)
T ss_dssp             EEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEECCchhhc----cCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            99999988873    24678999999999999999997543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.74  E-value=6.8e-18  Score=140.43  Aligned_cols=144  Identities=19%  Similarity=0.225  Sum_probs=110.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC--chhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~fD  107 (258)
                      +++.+|||||||+|.++..++..+. +++|+|+|+.+++.|+++         +.++++|+.+.  ++      ++++||
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~------~~~~fD  103 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSL------PDKYLD  103 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTS------CTTCBS
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhc------CCCCee
Confidence            4778999999999999998888765 899999999999998765         46777876432  22      568999


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVIT  187 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~  187 (258)
                      +|++..+++++  ..++...+++++.++|+|||.+++.+++..........                             
T Consensus       104 ~i~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-----------------------------  152 (240)
T 3dli_A          104 GVMISHFVEHL--DPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINF-----------------------------  152 (240)
T ss_dssp             EEEEESCGGGS--CGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHH-----------------------------
T ss_pred             EEEECCchhhC--CcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHH-----------------------------
Confidence            99999999873  34567899999999999999999998886544322110                             


Q ss_pred             ecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChh
Q 025059          188 FEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (258)
Q Consensus       188 f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~  241 (258)
                                    |   ...    ...+..+++.+.++++++||+.+....+.
T Consensus       153 --------------~---~~~----~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  185 (240)
T 3dli_A          153 --------------Y---IDP----THKKPVHPETLKFILEYLGFRDVKIEFFE  185 (240)
T ss_dssp             --------------T---TST----TCCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             --------------h---cCc----cccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence                          0   000    01135678999999999999998776654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.74  E-value=2.9e-17  Score=136.31  Aligned_cols=105  Identities=23%  Similarity=0.256  Sum_probs=90.6

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....    ++.+.++|+...++      ++++||+|+
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~d~~~~~~------~~~~fD~v~  112 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT----GITYERADLDKLHL------PQDSFDLAY  112 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSS----SEEEEECCGGGCCC------CTTCEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccC----CceEEEcChhhccC------CCCCceEEE
Confidence            78899999999999999998876559999999999999999887543    68999999866554      568999999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +..++++.    ++...+++++.++|+|||.++++.++.
T Consensus       113 ~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~  147 (243)
T 3bkw_A          113 SSLALHYV----EDVARLFRTVHQALSPGGHFVFSTEHP  147 (243)
T ss_dssp             EESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             Eecccccc----chHHHHHHHHHHhcCcCcEEEEEeCCc
Confidence            99988873    246789999999999999999998875

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.73  E-value=2.1e-17  Score=134.46  Aligned_cols=124  Identities=18%  Similarity=0.209  Sum_probs=102.1

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (258)
                      ++..++.++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....   .++.+.++|+.+.++      ++
T Consensus        35 ~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~---~~i~~~~~d~~~~~~------~~  105 (215)
T 2pxx_A           35 LLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV---PQLRWETMDVRKLDF------PS  105 (215)
T ss_dssp             HHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC---TTCEEEECCTTSCCS------CS
T ss_pred             HHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC---CCcEEEEcchhcCCC------CC
Confidence            344556788999999999999999998887668999999999999999987642   268999999877655      56


Q ss_pred             CceeEEEecccccccc-----------CCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHH
Q 025059          104 NQADLVCCFQHLQMCF-----------ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~-----------~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~  156 (258)
                      ++||+|++..+++++.           .+......+++++.++|+|||.+++..++.......+
T Consensus       106 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~  169 (215)
T 2pxx_A          106 ASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRH  169 (215)
T ss_dssp             SCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHHHHHH
T ss_pred             CcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHHHHHH
Confidence            8999999988876643           2256789999999999999999999999886655443

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.73  E-value=1e-16  Score=138.76  Aligned_cols=109  Identities=15%  Similarity=0.205  Sum_probs=92.1

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      ..++.+|||+|||+|..+..++.. +. +++|+|+|+.+++.|+++....+...++.+.++|+.+  +       +++||
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~-------~~~fD  157 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED--F-------AEPVD  157 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG--C-------CCCCS
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH--C-------CCCcC
Confidence            357889999999999999988877 55 9999999999999999998876554468999999743  2       37899


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +|++..+++++  +.++...+++++.++|+|||.+++..+..
T Consensus       158 ~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  197 (318)
T 2fk8_A          158 RIVSIEAFEHF--GHENYDDFFKRCFNIMPADGRMTVQSSVS  197 (318)
T ss_dssp             EEEEESCGGGT--CGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             EEEEeChHHhc--CHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            99999988873  33668899999999999999999987654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.73  E-value=8.8e-17  Score=138.58  Aligned_cols=115  Identities=16%  Similarity=0.136  Sum_probs=96.2

Q ss_pred             HHhcCCCCEEEEEcCCCCccHHHHH--HcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 025059           26 KIYSHPYVTVCDLYCGAGVDVDKWE--TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~~~--~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (258)
                      ....+++.+|||||||+|..+..++  ..+..+++|+|+|+.+++.|+++....+...++.++++|+.+.++      + 
T Consensus       113 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~-  185 (305)
T 3ocj_A          113 QRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT------R-  185 (305)
T ss_dssp             HHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC------C-
T ss_pred             HhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc------c-
Confidence            5556789999999999999888874  334569999999999999999999876554469999999877554      4 


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ++||+|++..++++ +.+......+++++.++|+|||.+++....
T Consensus       186 ~~fD~v~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  229 (305)
T 3ocj_A          186 EGYDLLTSNGLNIY-EPDDARVTELYRRFWQALKPGGALVTSFLT  229 (305)
T ss_dssp             SCEEEEECCSSGGG-CCCHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCeEEEEECChhhh-cCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence            89999999998886 445777778999999999999999998544

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.73  E-value=2.9e-17  Score=133.85  Aligned_cols=103  Identities=18%  Similarity=0.137  Sum_probs=88.0

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ++++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++.       ++.+.++|+...+       .+++||+
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~-------~~~~fD~  105 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD-------AIDAYDA  105 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC-------CCSCEEE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC-------CCCcEEE
Confidence            45788999999999999999988765 9999999999999999887       3467788875543       3689999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++..++++  ...++...+++++.++|+|||.++++.+.
T Consensus       106 v~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A          106 VWAHACLLH--VPRDELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             EEECSCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEecCchhh--cCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            999999987  34678899999999999999999998654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.73  E-value=1.3e-17  Score=138.91  Aligned_cols=109  Identities=12%  Similarity=0.094  Sum_probs=91.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||||||+|..+..++.....+++|+|+|+.+++.|+++....+ ..++.++++|+...++      ++++||+|+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~------~~~~fD~v~  151 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTP------EPDSYDVIW  151 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCC------CSSCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCC------CCCCEEEEE
Confidence            578999999999999988877766699999999999999999887642 2268899999866554      456899999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +..++++  ...+....+++++.++|+|||.++++.+.
T Consensus       152 ~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          152 IQWVIGH--LTDQHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             EESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             Ecchhhh--CCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            9999887  34556789999999999999999997554

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.72  E-value=7.9e-17  Score=131.39  Aligned_cols=106  Identities=20%  Similarity=0.129  Sum_probs=89.9

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .+++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|++  ...   .++.++++|+.+. +      ++++||+
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~--~~~---~~~~~~~~d~~~~-~------~~~~~D~  110 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR--HGL---DNVEFRQQDLFDW-T------PDRQWDA  110 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG--GCC---TTEEEEECCTTSC-C------CSSCEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh--cCC---CCeEEEecccccC-C------CCCceeE
Confidence            34678999999999999999988855 99999999999999987  111   2689999998765 3      5789999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |++..++++  ...+....+++++.++|+|||.+++..++.
T Consensus       111 v~~~~~l~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          111 VFFAHWLAH--VPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             EEEechhhc--CCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            999999987  345667899999999999999999997765

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.72  E-value=1.6e-16  Score=130.06  Aligned_cols=110  Identities=14%  Similarity=0.154  Sum_probs=91.1

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCc----eeEEEEcCCCCCchhhhhhhcCC
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNF----IAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      .++.+|||+|||+|.++..++..+. .+++|+|+|+.+++.|++++...+...    ++.+.++|+...+.      ..+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~  101 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK------RFH  101 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG------GGC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc------cCC
Confidence            4678999999999999999988643 599999999999999999987554332    68999999865544      457


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +||+|++..+++++  +.+....+++++.++|+|||.++++ ++
T Consensus       102 ~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~li~~-~~  142 (217)
T 3jwh_A          102 GYDAATVIEVIEHL--DLSRLGAFERVLFEFAQPKIVIVTT-PN  142 (217)
T ss_dssp             SCSEEEEESCGGGC--CHHHHHHHHHHHHTTTCCSEEEEEE-EB
T ss_pred             CcCEEeeHHHHHcC--CHHHHHHHHHHHHHHcCCCEEEEEc-cC
Confidence            99999999999983  5677899999999999999965554 44

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.72  E-value=1.1e-16  Score=129.35  Aligned_cols=107  Identities=14%  Similarity=0.106  Sum_probs=90.8

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .+++ +|||+|||+|..+..++..+. +++|+|+|+.+++.|+++....+.  ++.+.++|+.+.++      ++++||+
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~------~~~~fD~   97 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDI------VADAWEG   97 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSC------CTTTCSE
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCC------CcCCccE
Confidence            4667 999999999999988887765 999999999999999999876643  78999999877654      5689999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |++.+ .|   .+.++...++.++.++|+|||.+++..++.
T Consensus        98 v~~~~-~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  134 (202)
T 2kw5_A           98 IVSIF-CH---LPSSLRQQLYPKVYQGLKPGGVFILEGFAP  134 (202)
T ss_dssp             EEEEC-CC---CCHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred             EEEEh-hc---CCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            99854 22   257789999999999999999999997765

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.71  E-value=3.1e-17  Score=137.92  Aligned_cols=107  Identities=13%  Similarity=0.085  Sum_probs=87.8

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHh----------c------CCCceeEEEEcCCCCC
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN----------Q------RKNFIAEFFEADPCAE   93 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~----------~------~~~~~~~~~~~d~~~~   93 (258)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++...          .      ....++.++++|+.+.
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            4788999999999999999988877 999999999999999877631          0      0123789999999775


Q ss_pred             chhhhhhhc-CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           94 NFETQMQEK-ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        94 ~~~~~~~~~-~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +.      . .++||+|++..+++++  +.+....+++++.++|||||.+++.
T Consensus       146 ~~------~~~~~FD~V~~~~~l~~l--~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          146 PR------ANIGKFDRIWDRGALVAI--NPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             GG------GCCCCEEEEEESSSTTTS--CGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             Cc------ccCCCEEEEEEhhhhhhC--CHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            54      3 3799999998888763  4556778999999999999999755

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.71  E-value=8.5e-17  Score=131.43  Aligned_cols=108  Identities=20%  Similarity=0.228  Sum_probs=93.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++.....   ++.++++|+.+.+       ++++||+|+
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~-------~~~~fD~v~  119 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS-------TAELFDLIV  119 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC-------CSCCEEEEE
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC-------CCCCccEEE
Confidence            568999999999999999987764 99999999999999999887643   7899999987654       368999999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      +..++++ +.+.+....+++++.++|+|||.++++++...
T Consensus       120 ~~~~l~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  158 (216)
T 3ofk_A          120 VAEVLYY-LEDMTQMRTAIDNMVKMLAPGGHLVFGSARDA  158 (216)
T ss_dssp             EESCGGG-SSSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             EccHHHh-CCCHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence            9999987 45567788999999999999999999877654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.71  E-value=2.5e-16  Score=130.28  Aligned_cols=110  Identities=15%  Similarity=0.229  Sum_probs=90.8

Q ss_pred             HHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      +..+.+++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++..      ++.+.++|+.+.++       ++
T Consensus        34 l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-------~~   99 (239)
T 3bxo_A           34 VRSRTPEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP------DATLHQGDMRDFRL-------GR   99 (239)
T ss_dssp             HHHHCTTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT------TCEEEECCTTTCCC-------SS
T ss_pred             HHHhcCCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC------CCEEEECCHHHccc-------CC
Confidence            344457789999999999999999988765 89999999999999988752      57899999876543       56


Q ss_pred             ceeEEEecc-ccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          105 QADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       105 ~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +||+|+|.+ ++++ +.+.++...+++++.++|+|||.+++..+..
T Consensus       100 ~~D~v~~~~~~~~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A          100 KFSAVVSMFSSVGY-LKTTEELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             CEEEEEECTTGGGG-CCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             CCcEEEEcCchHhh-cCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            899999755 6765 4456788999999999999999999986544

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.71  E-value=1.7e-16  Score=134.97  Aligned_cols=102  Identities=25%  Similarity=0.282  Sum_probs=87.2

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||||||+|..+..++.. ..+++|+|+|+.|++.|+++..      ++.+.++|+...++       +++||+|
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-------~~~fD~v  121 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAATMIEKARQNYP------HLHFDVADARNFRV-------DKPLDAV  121 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCT------TSCEEECCTTTCCC-------SSCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHhhCC------CCEEEECChhhCCc-------CCCcCEE
Confidence            47789999999999999999884 4599999999999999988762      57899999877553       4789999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ++..++++.-    +...+++++.++|+|||.+++..++.
T Consensus       122 ~~~~~l~~~~----d~~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          122 FSNAMLHWVK----EPEAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             EEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EEcchhhhCc----CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            9999998742    36789999999999999999998765

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.71  E-value=2.2e-16  Score=134.71  Aligned_cols=106  Identities=24%  Similarity=0.333  Sum_probs=91.2

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++.+|||+|||+|..+..++.. + ..+++|+|+|+.+++.|+++....+.  ++.+.++|+.+.++       +++||
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~~fD   91 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL-------NDKYD   91 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC-------SSCEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCc-------CCCee
Confidence            47899999999999999998776 2 35999999999999999999876643  79999999987554       46999


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +|++..++++.    .+...+++++.++|+|||.+++..|+
T Consensus        92 ~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           92 IAICHAFLLHM----TTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             EEEEESCGGGC----SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEECChhhcC----CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            99999988873    33578999999999999999999888

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.71  E-value=6.7e-17  Score=136.98  Aligned_cols=108  Identities=22%  Similarity=0.314  Sum_probs=92.1

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      +++.+|||||||+|..+..++... ..+++|+|+|+.+++.|+++....+.. ++.+.++|+...++      ++++||+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~------~~~~fD~  108 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPF------EDSSFDH  108 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCS------CTTCEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCC------CCCCeeE
Confidence            578999999999999999998874 459999999999999999998776543 68999999876655      5789999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++..++++.    .+...+++++.++|+|||.+++..++
T Consensus       109 v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (276)
T 3mgg_A          109 IFVCFVLEHL----QSPEEALKSLKKVLKPGGTITVIEGD  144 (276)
T ss_dssp             EEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEechhhhc----CCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            9999988873    23558999999999999999998654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.70  E-value=4.3e-16  Score=127.91  Aligned_cols=114  Identities=23%  Similarity=0.276  Sum_probs=96.3

Q ss_pred             HHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      ...++++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++....+  .++.++++|+.+.++      ++++
T Consensus        33 ~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~------~~~~  103 (227)
T 1ve3_A           33 MKYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSF------EDKT  103 (227)
T ss_dssp             HHSCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCS------CTTC
T ss_pred             HHhcCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCC------CCCc
Confidence            34556789999999999999988888766 99999999999999999887654  278999999877554      5679


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      ||+|++..++++  .+..+...+++++.++|+|||.+++..++..
T Consensus       104 ~D~v~~~~~~~~--~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  146 (227)
T 1ve3_A          104 FDYVIFIDSIVH--FEPLELNQVFKEVRRVLKPSGKFIMYFTDLR  146 (227)
T ss_dssp             EEEEEEESCGGG--CCHHHHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             EEEEEEcCchHh--CCHHHHHHHHHHHHHHcCCCcEEEEEecChH
Confidence            999999987554  4577889999999999999999999988754

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.70  E-value=8e-17  Score=134.86  Aligned_cols=109  Identities=20%  Similarity=0.227  Sum_probs=91.9

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|..+..++.....+++|+|+|+.+++.|+++....+...++.+.++|+.+.++       +++||+
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~fD~  106 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-------NEKCDV  106 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-------SSCEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-------CCCCCE
Confidence            4588999999999999999888764458999999999999999998876554479999999876543       578999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++..++++.    .+...+++++.++|||||.+++..+.
T Consensus       107 V~~~~~~~~~----~~~~~~l~~~~r~LkpgG~l~~~~~~  142 (256)
T 1nkv_A          107 AACVGATWIA----GGFAGAEELLAQSLKPGGIMLIGEPY  142 (256)
T ss_dssp             EEEESCGGGT----SSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             EEECCChHhc----CCHHHHHHHHHHHcCCCeEEEEecCc
Confidence            9999988863    24678999999999999999998653

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.70  E-value=1.9e-16  Score=132.35  Aligned_cols=120  Identities=27%  Similarity=0.370  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh
Q 025059           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (258)
Q Consensus        18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   97 (258)
                      .|+...+-....+++.+|||+|||+|..+..++..+. +++|+|+|+.|++.|+++....+.  ++.++++|+.+.++  
T Consensus        28 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~--  102 (252)
T 1wzn_A           28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF--  102 (252)
T ss_dssp             HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC--
T ss_pred             HHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhccc--
Confidence            4444443222234678999999999999999988765 999999999999999999876543  68999999866543  


Q ss_pred             hhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                           .++||+|+|.++.... .+.++...+++++.++|+|||.+++..++
T Consensus       103 -----~~~fD~v~~~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          103 -----KNEFDAVTMFFSTIMY-FDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             -----CSCEEEEEECSSGGGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -----CCCccEEEEcCCchhc-CCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence                 4689999987544332 35778899999999999999999998876

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.70  E-value=4.1e-16  Score=130.83  Aligned_cols=107  Identities=17%  Similarity=0.133  Sum_probs=89.5

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.|+++....  ..++.+.++|+.+.++      ++++||+
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~~~fD~  107 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGV--DRKVQVVQADARAIPL------PDESVHG  107 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHTTTS--CTTEEEEESCTTSCCS------CTTCEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhcc--CCceEEEEcccccCCC------CCCCeeE
Confidence            4578899999999999999998775 49999999999999999987221  2278999999977665      5789999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++..++|+.    .+...++.++.++|+|||.+++..+.
T Consensus       108 v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (263)
T 2yqz_A          108 VIVVHLWHLV----PDWPKVLAEAIRVLKPGGALLEGWDQ  143 (263)
T ss_dssp             EEEESCGGGC----TTHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEECCchhhc----CCHHHHHHHHHHHCCCCcEEEEEecC
Confidence            9999999873    24678999999999999999988443

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.70  E-value=1.1e-15  Score=129.40  Aligned_cols=110  Identities=13%  Similarity=0.020  Sum_probs=87.2

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CC-CeEEEEecChh------HHHHHHHHHHhcCCCceeEEEEcC-C--CCCchhh
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATS------GIGEARDTWENQRKNFIAEFFEAD-P--CAENFET   97 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~-~~v~gvD~s~~------~l~~a~~~~~~~~~~~~~~~~~~d-~--~~~~~~~   97 (258)
                      ..++.+|||||||+|..+..++.. +. .+++|+|+|+.      +++.|++++...+...++.+.++| .  ...++  
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--  118 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPI--  118 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGG--
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCC--
Confidence            568899999999999999998876 33 59999999997      999999998876544479999998 3  22233  


Q ss_pred             hhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                          ++++||+|++..++++. ...   ..+++.+.++++|||.+++....
T Consensus       119 ----~~~~fD~v~~~~~l~~~-~~~---~~~~~~~~~l~~~gG~l~~~~~~  161 (275)
T 3bkx_A          119 ----ADQHFDRVVLAHSLWYF-ASA---NALALLFKNMAAVCDHVDVAEWS  161 (275)
T ss_dssp             ----TTCCCSEEEEESCGGGS-SCH---HHHHHHHHHHTTTCSEEEEEEEC
T ss_pred             ----CCCCEEEEEEccchhhC-CCH---HHHHHHHHHHhCCCCEEEEEEec
Confidence                46899999999999873 333   34777778888889999998543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.70  E-value=4.4e-17  Score=135.29  Aligned_cols=113  Identities=16%  Similarity=0.007  Sum_probs=89.6

Q ss_pred             HHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC--chhhhhhhcC
Q 025059           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQEKA  103 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  103 (258)
                      .....++.+|||||||+|..+..++..+..+++|+|+|+.|++.|+++....+  .++.++++|+.+.  ++      ++
T Consensus        55 ~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~------~~  126 (236)
T 1zx0_A           55 AAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL------PD  126 (236)
T ss_dssp             HHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS------CT
T ss_pred             hhcCCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhccc------CC
Confidence            33456788999999999999998876666689999999999999999887654  3789999997553  33      56


Q ss_pred             CceeEEEe-ccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          104 NQADLVCC-FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       104 ~~fD~V~~-~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ++||+|++ .+.++...........+++++.++|||||++++..
T Consensus       127 ~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          127 GHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             TCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             CceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            89999999 66543222345567788999999999999998763

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.69  E-value=9.1e-17  Score=131.86  Aligned_cols=110  Identities=20%  Similarity=0.267  Sum_probs=88.8

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC--Cchhhhhhh
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE  101 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~  101 (258)
                      ++.....++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.++++.        ..+.++|+.+  .++      
T Consensus        25 l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~------   89 (230)
T 3cc8_A           25 LLKHIKKEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPY------   89 (230)
T ss_dssp             HHTTCCTTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCS------
T ss_pred             HHHHhccCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCC------
Confidence            333333578999999999999999988875 69999999999999988654        2678899865  333      


Q ss_pred             cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~  152 (258)
                      ++++||+|++..++++.-    +...++.++.++|+|||.++++.|+....
T Consensus        90 ~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  136 (230)
T 3cc8_A           90 EEEQFDCVIFGDVLEHLF----DPWAVIEKVKPYIKQNGVILASIPNVSHI  136 (230)
T ss_dssp             CTTCEEEEEEESCGGGSS----CHHHHHHHTGGGEEEEEEEEEEEECTTSH
T ss_pred             CCCccCEEEECChhhhcC----CHHHHHHHHHHHcCCCCEEEEEeCCcchH
Confidence            467999999999888732    34689999999999999999999887543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.69  E-value=3.9e-16  Score=133.73  Aligned_cols=114  Identities=13%  Similarity=0.124  Sum_probs=79.0

Q ss_pred             CCCCEEEEEcCCCCccHHH----HHHc-CCCe--EEEEecChhHHHHHHHHHHhcC-C-CceeEEEEcCCCCCchhhhh-
Q 025059           30 HPYVTVCDLYCGAGVDVDK----WETA-LIAN--YIGIDVATSGIGEARDTWENQR-K-NFIAEFFEADPCAENFETQM-   99 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~----~~~~-~~~~--v~gvD~s~~~l~~a~~~~~~~~-~-~~~~~~~~~d~~~~~~~~~~-   99 (258)
                      .++.+|||||||+|..+..    +... +...  ++|+|+|+.|++.|+++..... . ...+.+.++++.  ++...+ 
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~  128 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSS--EYQSRML  128 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHH--HHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchh--hhhhhhc
Confidence            3567999999999975443    3232 2333  4999999999999999986431 1 112334444432  221000 


Q ss_pred             -hhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          100 -QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       100 -~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                       +.++++||+|++..++|+.    ++...+++++.++|||||.+++..++.
T Consensus       129 ~~~~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          129 EKKELQKWDFIHMIQMLYYV----KDIPATLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             TTTCCCCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             cccCCCceeEEEEeeeeeec----CCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence             0136899999999999983    347789999999999999999986654

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.69  E-value=3.5e-16  Score=126.92  Aligned_cols=112  Identities=15%  Similarity=0.109  Sum_probs=91.8

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      ...++.+|||+|||+|..+..++.....+++|+|+|+.+++.|+++....+.  ++.+.++|+.+.++      ++++||
T Consensus        20 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~------~~~~fD   91 (209)
T 2p8j_A           20 ESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLPF------KDESMS   91 (209)
T ss_dssp             HSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSCCS------CTTCEE
T ss_pred             ccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhCCC------CCCcee
Confidence            3456889999999999885444444444999999999999999998876532  68899999977665      568999


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +|++..++++.  +.++...+++++.++|+|||.+++..++.
T Consensus        92 ~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           92 FVYSYGTIFHM--RKNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             EEEECSCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             EEEEcChHHhC--CHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            99999888873  46789999999999999999999986653

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.69  E-value=2.4e-16  Score=135.33  Aligned_cols=112  Identities=13%  Similarity=0.113  Sum_probs=90.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHH--cCCCeEEEEecChhHHHHHHHHHHhc-CCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWET--ALIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      ..++.+|||||||+|..+..++.  .+..+++|+|+|+.+++.|+++.... +...++.++++|+.+.++........++
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  113 (299)
T 3g5t_A           34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK  113 (299)
T ss_dssp             CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence            45789999999999999999986  35669999999999999999998765 2233799999999876652100001279


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ||+|++..++|+.     +...+++++.++|+|||.+++.
T Consensus       114 fD~V~~~~~l~~~-----~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          114 IDMITAVECAHWF-----DFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             EEEEEEESCGGGS-----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeEEeHhhHHHHh-----CHHHHHHHHHHhcCCCcEEEEE
Confidence            9999999999984     5789999999999999999883

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.69  E-value=2.3e-16  Score=125.81  Aligned_cols=124  Identities=10%  Similarity=0.034  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059           17 YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (258)
Q Consensus        17 ~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (258)
                      ..++.. ++....+++.+|||+|||+|..+..++.. ..+|+|+|+|+.|++.|+++....+. .++.+++.|.....- 
T Consensus         9 ~~~~~~-~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~-   84 (185)
T 3mti_A            9 IHMSHD-FLAEVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDH-   84 (185)
T ss_dssp             HHHHHH-HHHTTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGG-
T ss_pred             HHHHHH-HHHHhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHh-
Confidence            344443 34556778999999999999999999887 55999999999999999999987654 378898866543210 


Q ss_pred             hhhhhcCCceeEEEecccccc-----ccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059           97 TQMQEKANQADLVCCFQHLQM-----CFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~-----~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                        .  .+++||+|++......     ..........+++++.++|+|||.+++....
T Consensus        85 --~--~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           85 --Y--VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             --T--CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             --h--ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence              1  3678999987632111     1113466778999999999999999988654

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.68  E-value=5.7e-16  Score=124.20  Aligned_cols=125  Identities=13%  Similarity=0.007  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059           17 YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (258)
Q Consensus        17 ~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (258)
                      ..++...+......++.+|||+|||+|..+..++..+..+++|+|+|+.|++.|+++....+. .+++++++|+.+... 
T Consensus        30 ~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~-  107 (189)
T 3p9n_A           30 RESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVA-  107 (189)
T ss_dssp             HHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHH-
T ss_pred             HHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHh-
Confidence            344443433322347889999999999999988777777899999999999999999887654 378999999744211 


Q ss_pred             hhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHh--cccCCcEEEEEEcCc
Q 025059           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPDS  149 (258)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~--~LkpgG~~i~~~~~~  149 (258)
                       ..  ++++||+|++....+.   ..+....++..+.+  +|+|||.+++..+..
T Consensus       108 -~~--~~~~fD~i~~~~p~~~---~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          108 -AG--TTSPVDLVLADPPYNV---DSADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             -HC--CSSCCSEEEECCCTTS---CHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             -hc--cCCCccEEEECCCCCc---chhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence             11  3679999999876554   35778899999999  999999999987654

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.68  E-value=1.8e-16  Score=129.07  Aligned_cols=114  Identities=20%  Similarity=0.279  Sum_probs=93.8

Q ss_pred             HHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      .++....+++.+|||+|||+|..+..+   +..+++|+|+|+.+++.|+++.  .    ++.+.++|+.+.++      +
T Consensus        28 ~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~--~----~~~~~~~d~~~~~~------~   92 (211)
T 2gs9_A           28 RALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA--P----EATWVRAWGEALPF------P   92 (211)
T ss_dssp             HHHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC--T----TSEEECCCTTSCCS------C
T ss_pred             HHHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC--C----CcEEEEcccccCCC------C
Confidence            345566668899999999999887766   4348999999999999999887  1    67899999877665      5


Q ss_pred             CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHH
Q 025059          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~  155 (258)
                      +++||+|++..++++.    ++...+++++.++|+|||.++++.++....+..
T Consensus        93 ~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~  141 (211)
T 2gs9_A           93 GESFDVVLLFTTLEFV----EDVERVLLEARRVLRPGGALVVGVLEALSPWAA  141 (211)
T ss_dssp             SSCEEEEEEESCTTTC----SCHHHHHHHHHHHEEEEEEEEEEEECTTSHHHH
T ss_pred             CCcEEEEEEcChhhhc----CCHHHHHHHHHHHcCCCCEEEEEecCCcCcHHH
Confidence            7899999999988873    246789999999999999999998887655443

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.68  E-value=1.2e-16  Score=142.18  Aligned_cols=110  Identities=21%  Similarity=0.188  Sum_probs=90.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhc-----C--CCceeEEEEcCCCCC------
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-----R--KNFIAEFFEADPCAE------   93 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~-----~--~~~~~~~~~~d~~~~------   93 (258)
                      ..++.+|||||||+|..+..++..  +..+++|+|+|+.+++.|+++....     +  ...++.++++|+.+.      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            347889999999999999888776  3459999999999999999887543     1  112799999999775      


Q ss_pred             chhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ++      ++++||+|++..++++.    .+...+++++.++|||||.+++..+.
T Consensus       161 ~~------~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~~  205 (383)
T 4fsd_A          161 GV------PDSSVDIVISNCVCNLS----TNKLALFKEIHRVLRDGGELYFSDVY  205 (383)
T ss_dssp             CC------CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CC------CCCCEEEEEEccchhcC----CCHHHHHHHHHHHcCCCCEEEEEEec
Confidence            44      57899999999999873    23679999999999999999998544

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.68  E-value=3.2e-16  Score=128.60  Aligned_cols=147  Identities=16%  Similarity=0.199  Sum_probs=108.5

Q ss_pred             HHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      +....+ +.+|||+|||+|..+..++..     +|+|+|+.+++.|+++        ++.+.++|+...++      +++
T Consensus        42 l~~~~~-~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~------~~~  101 (219)
T 1vlm_A           42 VKCLLP-EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPL------KDE  101 (219)
T ss_dssp             HHHHCC-SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCS------CTT
T ss_pred             HHHhCC-CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCC------CCC
Confidence            334444 889999999999998877543     9999999999999876        46789999876554      567


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESY  184 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  184 (258)
                      +||+|++..++++.    ++...+++++.++|+|||.++++.++............    . .        +.       
T Consensus       102 ~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~----~-~--------~~-------  157 (219)
T 1vlm_A          102 SFDFALMVTTICFV----DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKN----K-E--------KS-------  157 (219)
T ss_dssp             CEEEEEEESCGGGS----SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHT----T-T--------C--------
T ss_pred             CeeEEEEcchHhhc----cCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHH----h-c--------Cc-------
Confidence            99999999988873    34578999999999999999999887654433322110    0 0        00       


Q ss_pred             EEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCCh
Q 025059          185 VITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (258)
Q Consensus       185 ~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f  240 (258)
                                 +.+              ......+.+.+.++++++||+++.....
T Consensus       158 -----------~~~--------------~~~~~~~~~~l~~~l~~~Gf~~~~~~~~  188 (219)
T 1vlm_A          158 -----------VFY--------------KNARFFSTEELMDLMRKAGFEEFKVVQT  188 (219)
T ss_dssp             -----------CCS--------------TTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             -----------chh--------------cccccCCHHHHHHHHHHCCCeEEEEecc
Confidence                       000              0113568999999999999999876543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.68  E-value=5.2e-16  Score=125.00  Aligned_cols=121  Identities=16%  Similarity=0.117  Sum_probs=95.4

Q ss_pred             HHHHHhcCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh
Q 025059           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (258)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (258)
                      .++.....++.+|||+|||+|..+..++..  +..+++|+|+|+.+++.|++++...+...++.++++|+.+.+-  .  
T Consensus        14 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~--   89 (197)
T 3eey_A           14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK--Y--   89 (197)
T ss_dssp             HHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG--T--
T ss_pred             HHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh--h--
Confidence            344556778899999999999999988876  3459999999999999999999876544479999999755321  1  


Q ss_pred             hcCCceeEEEecccc-----ccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          101 EKANQADLVCCFQHL-----QMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       101 ~~~~~fD~V~~~~~l-----~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                       .+++||+|++...+     +......+....+++++.++|+|||.+++....
T Consensus        90 -~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           90 -IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             -CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             -ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence             35799999987644     222344566778999999999999999988644

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.67  E-value=5.6e-16  Score=126.86  Aligned_cols=105  Identities=24%  Similarity=0.249  Sum_probs=83.0

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++   .    ++.+.+.|+.+...  .......+||+|
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~----~~~~~~~~~~~~~~--~~~~~~~~fD~v  120 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA---G----AGEVHLASYAQLAE--AKVPVGKDYDLI  120 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT---C----SSCEEECCHHHHHT--TCSCCCCCEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh---c----ccccchhhHHhhcc--cccccCCCccEE
Confidence            3679999999999999999888755 899999999999999887   1    56778887644210  011134569999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ++..+++ .    .+...+++++.++|+|||.+++..++.
T Consensus       121 ~~~~~l~-~----~~~~~~l~~~~~~L~pgG~l~~~~~~~  155 (227)
T 3e8s_A          121 CANFALL-H----QDIIELLSAMRTLLVPGGALVIQTLHP  155 (227)
T ss_dssp             EEESCCC-S----SCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EECchhh-h----hhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence            9998887 2    235689999999999999999998875

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.66  E-value=1.7e-16  Score=132.07  Aligned_cols=117  Identities=17%  Similarity=0.022  Sum_probs=90.1

Q ss_pred             HHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      .+.+....+|.+|||||||+|..+..+++....+++|+|+|+.+++.|+++....+.  ++.++.+|+....  ..+  +
T Consensus        52 ~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~--~~~--~  125 (236)
T 3orh_A           52 ALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVA--PTL--P  125 (236)
T ss_dssp             HHHHHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHG--GGS--C
T ss_pred             HHHHhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhc--ccc--c
Confidence            444555678999999999999999888777667899999999999999998876643  7788888863311  111  5


Q ss_pred             CCceeEEEecc-ccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +++||.|+.-- ...+...+..+...+++++.++|||||+|++.
T Consensus       126 ~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          126 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence            78899996522 22233455778899999999999999999875

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.66  E-value=1.2e-15  Score=121.91  Aligned_cols=112  Identities=17%  Similarity=0.166  Sum_probs=94.7

Q ss_pred             HHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      .++..+.+++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++..      ++.+.++|+.+.++      +
T Consensus        38 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~~~------~  104 (195)
T 3cgg_A           38 RLIDAMAPRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQI------S  104 (195)
T ss_dssp             HHHHHHSCTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTSCC------C
T ss_pred             HHHHHhccCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC------CCcEEEcccccCCC------C
Confidence            46677788899999999999999999988754 99999999999999998763      47899999877554      5


Q ss_pred             CCceeEEEec-cccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          103 ANQADLVCCF-QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       103 ~~~fD~V~~~-~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +++||+|++. ..+++  .+.+....++.++.++|+|||.+++..++.
T Consensus       105 ~~~~D~i~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~  150 (195)
T 3cgg_A          105 ETDFDLIVSAGNVMGF--LAEDGREPALANIHRALGADGRAVIGFGAG  150 (195)
T ss_dssp             CCCEEEEEECCCCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             CCceeEEEECCcHHhh--cChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            6899999998 55665  356778999999999999999999987654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.65  E-value=3.5e-16  Score=123.02  Aligned_cols=100  Identities=14%  Similarity=0.218  Sum_probs=84.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|..+..++.... +++|+|+|+.+++.|+++..      ++.+.++|   .++      ++++||+
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~------~v~~~~~d---~~~------~~~~~D~   78 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFD------SVITLSDP---KEI------PDNSVDF   78 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCT------TSEEESSG---GGS------CTTCEEE
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhCC------CcEEEeCC---CCC------CCCceEE
Confidence            45778999999999999999988765 99999999999999998821      67888888   333      5689999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++..++++.    ++...+++++.++|+|||.+++..+.
T Consensus        79 v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~  114 (170)
T 3i9f_A           79 ILFANSFHDM----DDKQHVISEVKRILKDDGRVIIIDWR  114 (170)
T ss_dssp             EEEESCSTTC----SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEccchhcc----cCHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            9999988873    34678999999999999999988543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.65  E-value=1.1e-16  Score=143.76  Aligned_cols=149  Identities=19%  Similarity=0.260  Sum_probs=106.2

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||||||+|.++..++..+. +++|+|+|+.+++.|+++.  .      ....... .......++.++++||+|
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~--~------~~~~~~~-~~~~~~~l~~~~~~fD~I  175 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKG--I------RVRTDFF-EKATADDVRRTEGPANVI  175 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTT--C------CEECSCC-SHHHHHHHHHHHCCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcC--C------Ccceeee-chhhHhhcccCCCCEEEE
Confidence            4788999999999999999988766 9999999999999998761  1      1111111 111111122246899999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEec
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFE  189 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~  189 (258)
                      ++..++++.    ++...+++++.++|+|||++++.+|+...+....                 .|..            
T Consensus       176 ~~~~vl~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~------------  222 (416)
T 4e2x_A          176 YAANTLCHI----PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKT-----------------SFDQ------------  222 (416)
T ss_dssp             EEESCGGGC----TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHT-----------------CGGG------------
T ss_pred             EECChHHhc----CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhc-----------------chhh------------
Confidence            999999873    3688999999999999999999998865543210                 0000            


Q ss_pred             ccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChh
Q 025059          190 VEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (258)
Q Consensus       190 ~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~  241 (258)
                                 .|    ..     .....+.+.+.++++++||++++...+.
T Consensus       223 -----------~~----~~-----~~~~~s~~~l~~ll~~aGf~~~~~~~~~  254 (416)
T 4e2x_A          223 -----------IF----DE-----HFFLFSATSVQGMAQRCGFELVDVQRLP  254 (416)
T ss_dssp             -----------CS----TT-----CCEECCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             -----------hh----hh-----hhhcCCHHHHHHHHHHcCCEEEEEEEcc
Confidence                       00    00     0124578999999999999999877654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.64  E-value=1e-15  Score=122.96  Aligned_cols=105  Identities=19%  Similarity=0.148  Sum_probs=88.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++....+.. ++.+.++|+.+.++       +++||+|+
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~-------~~~~D~v~  102 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTF-------DRQYDFIL  102 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCCC-------CCCEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCCC-------CCCceEEE
Confidence            678999999999999999988755 9999999999999999988765432 58999999865432       57899999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +..++++  .+.++...+++++.++|+|||.+++..
T Consensus       103 ~~~~l~~--~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          103 STVVLMF--LEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             EESCGGG--SCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Ecchhhh--CCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            9998887  345568899999999999999987763

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.64  E-value=2.7e-15  Score=126.21  Aligned_cols=111  Identities=16%  Similarity=0.170  Sum_probs=90.6

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (258)
                      ++..+++++.+|||+|||+|..+..++..+. +++|+|+|+.|++.|+++...       .+.++|+.+.++      ++
T Consensus        47 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~-------~~~~~d~~~~~~------~~  112 (260)
T 2avn_A           47 FLEEYLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK-------NVVEAKAEDLPF------PS  112 (260)
T ss_dssp             HHHHHCCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS-------CEEECCTTSCCS------CT
T ss_pred             HHHHhcCCCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCC-------CEEECcHHHCCC------CC
Confidence            4455556889999999999999998887755 899999999999999887641       278899877665      57


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~  151 (258)
                      ++||+|++..++.+....   ...+++++.++|+|||.+++++++...
T Consensus       113 ~~fD~v~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~  157 (260)
T 2avn_A          113 GAFEAVLALGDVLSYVEN---KDKAFSEIRRVLVPDGLLIATVDNFYT  157 (260)
T ss_dssp             TCEEEEEECSSHHHHCSC---HHHHHHHHHHHEEEEEEEEEEEEBHHH
T ss_pred             CCEEEEEEcchhhhcccc---HHHHHHHHHHHcCCCeEEEEEeCChHH
Confidence            899999998765543232   788999999999999999999888653

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.64  E-value=1e-15  Score=130.51  Aligned_cols=104  Identities=20%  Similarity=0.187  Sum_probs=90.7

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|.++..++..+. +++|+|+|+.+++.|+++....+.  ++.+.++|+.+.++       .++||+|+
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-------~~~fD~i~  189 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-------QENYDFIV  189 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-------CSCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-------cCCccEEE
Confidence            688999999999999999988866 999999999999999999887754  78999999865443       67899999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +..++|+  .+.+....+++++.++|+|||.+++..
T Consensus       190 ~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          190 STVVFMF--LNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             ECSSGGG--SCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Eccchhh--CCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999987  355678899999999999999987763

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.64  E-value=1.6e-15  Score=127.76  Aligned_cols=119  Identities=14%  Similarity=0.048  Sum_probs=88.2

Q ss_pred             HHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh
Q 025059           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (258)
Q Consensus        19 ~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   98 (258)
                      |+...+-.....++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++.....  ....+...+.....    
T Consensus        33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~~--v~~~~~~~~~~~~~----  105 (261)
T 3iv6_A           33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADRC--VTIDLLDITAEIPK----  105 (261)
T ss_dssp             HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSSC--CEEEECCTTSCCCG----
T ss_pred             HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcc--ceeeeeeccccccc----
Confidence            444443333455789999999999999999988765 99999999999999999876541  12333222220000    


Q ss_pred             hhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                        ..+++||+|++..++|+  ...++...++.++.++| |||.++++.+.+
T Consensus       106 --~~~~~fD~Vv~~~~l~~--~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g  151 (261)
T 3iv6_A          106 --ELAGHFDFVLNDRLINR--FTTEEARRACLGMLSLV-GSGTVRASVKLG  151 (261)
T ss_dssp             --GGTTCCSEEEEESCGGG--SCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred             --ccCCCccEEEEhhhhHh--CCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence              12578999999998886  34677889999999999 999999996654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.63  E-value=7.1e-16  Score=132.26  Aligned_cols=117  Identities=17%  Similarity=0.230  Sum_probs=89.5

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCC-----------------------------
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKN-----------------------------   80 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~-----------------------------   80 (258)
                      ++.+|||||||+|..+..++.. +..+++|+|+|+.|++.|+++.......                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            5789999999999999999887 4569999999999999999876542211                             


Q ss_pred             ----------------------------ceeEEEEcCCCCCchhhhhhhcCCceeEEEecccccccc--CCHHHHHHHHH
Q 025059           81 ----------------------------FIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCF--ETEERARRLLQ  130 (258)
Q Consensus        81 ----------------------------~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~~~~~l~  130 (258)
                                                  .++.|.++|+...... ..+...++||+|+|..+++|+.  .+.+....+++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~-~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDD-LVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHH-HHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccc-cccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                        3689999998764410 1111468999999999886521  13557899999


Q ss_pred             HHHhcccCCcEEEEEEcC
Q 025059          131 NVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       131 ~i~~~LkpgG~~i~~~~~  148 (258)
                      ++.++|+|||+|++....
T Consensus       205 ~~~~~LkpGG~lil~~~~  222 (292)
T 3g07_A          205 RIYRHLRPGGILVLEPQP  222 (292)
T ss_dssp             HHHHHEEEEEEEEEECCC
T ss_pred             HHHHHhCCCcEEEEecCC
Confidence            999999999999987554

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.63  E-value=5.5e-15  Score=116.68  Aligned_cols=115  Identities=12%  Similarity=0.102  Sum_probs=89.1

Q ss_pred             HHHHHHh-cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhh
Q 025059           22 TALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (258)
Q Consensus        22 ~~li~~~-~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (258)
                      ..++... ..++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+...++ ++++|..+ .+    
T Consensus        15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~-~~----   88 (178)
T 3hm2_A           15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR-AF----   88 (178)
T ss_dssp             HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG-GG----
T ss_pred             HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh-hh----
Confidence            3344443 457789999999999999988776 3458999999999999999998876554357 78888643 22    


Q ss_pred             hhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      +...++||+|++..++++        ..+++++.++|+|||.+++..+...
T Consensus        89 ~~~~~~~D~i~~~~~~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~  131 (178)
T 3hm2_A           89 DDVPDNPDVIFIGGGLTA--------PGVFAAAWKRLPVGGRLVANAVTVE  131 (178)
T ss_dssp             GGCCSCCSEEEECC-TTC--------TTHHHHHHHTCCTTCEEEEEECSHH
T ss_pred             hccCCCCCEEEECCcccH--------HHHHHHHHHhcCCCCEEEEEeeccc
Confidence            112379999999887764        5789999999999999999877654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.62  E-value=1.3e-14  Score=115.68  Aligned_cols=111  Identities=15%  Similarity=0.151  Sum_probs=92.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCc-eeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|..+..++.. ..+++|+|+++.+++.|+++....+... ++.+.++|+.+. +      +.++||+
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~------~~~~~D~  122 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-V------KDRKYNK  122 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-C------TTSCEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-c------ccCCceE
Confidence            37889999999999999998887 5599999999999999999987664431 389999998652 2      3578999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~  151 (258)
                      |++...+|+   .......+++++.++|+|||.+++..+....
T Consensus       123 v~~~~~~~~---~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  162 (194)
T 1dus_A          123 IITNPPIRA---GKEVLHRIIEEGKELLKDNGEIWVVIQTKQG  162 (194)
T ss_dssp             EEECCCSTT---CHHHHHHHHHHHHHHEEEEEEEEEEEESTHH
T ss_pred             EEECCCccc---chhHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence            999887664   3677889999999999999999999887643

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.62  E-value=1.1e-15  Score=127.26  Aligned_cols=113  Identities=18%  Similarity=0.169  Sum_probs=91.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|.++..++..+. +++|+|+|+.+++.|+++....    ++.++++|+.+.+....+. ....||+
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~~----~~~~~~~d~~~~~~~~~~~-~~~~~d~  127 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAA----NISYRLLDGLVPEQAAQIH-SEIGDAN  127 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCCT----TEEEEECCTTCHHHHHHHH-HHHCSCE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCccc----CceEEECcccccccccccc-cccCccE
Confidence            45788999999999999999988777 8999999999999999987432    7899999997754422211 1235999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |++..++|+  .+.++...+++++.++|+|||.+++..+..
T Consensus       128 v~~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  166 (245)
T 3ggd_A          128 IYMRTGFHH--IPVEKRELLGQSLRILLGKQGAMYLIELGT  166 (245)
T ss_dssp             EEEESSSTT--SCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred             EEEcchhhc--CCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            999999987  344568899999999999999988876554

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.62  E-value=1.1e-14  Score=119.99  Aligned_cols=118  Identities=15%  Similarity=0.094  Sum_probs=92.7

Q ss_pred             HHHhcCCCCEEEEEcCC-CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC-chhhhhhhc
Q 025059           25 IKIYSHPYVTVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEK  102 (258)
Q Consensus        25 i~~~~~~~~~VLDlGcG-~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~  102 (258)
                      +....+++.+|||+||| +|..+..++.....+++|+|+|+.+++.|+++....+.  ++.++++|+... ++      +
T Consensus        49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~------~  120 (230)
T 3evz_A           49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGV------V  120 (230)
T ss_dssp             HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTT------C
T ss_pred             hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhc------c
Confidence            55566789999999999 99999988877445999999999999999999987755  789999997432 22      4


Q ss_pred             CCceeEEEecccccccc---------------CCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          103 ANQADLVCCFQHLQMCF---------------ETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~---------------~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      +++||+|++....+..-               ...+....+++++.++|+|||.+++.++...
T Consensus       121 ~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  183 (230)
T 3evz_A          121 EGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE  183 (230)
T ss_dssp             CSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH
T ss_pred             cCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH
Confidence            58999999875443210               1123357899999999999999999888764

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.61  E-value=4.3e-14  Score=122.98  Aligned_cols=109  Identities=17%  Similarity=0.093  Sum_probs=91.4

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|..+..++.. +..+++++|++ .+++.|+++....+...++.+.++|+.+.++       ...||+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~D~  235 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY-------GNDYDL  235 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC-------CSCEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC-------CCCCcE
Confidence            56789999999999999988877 34599999999 9999999998766544479999999976544       234999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++..++|+  .+.++...+++++.++|+|||.+++..+.
T Consensus       236 v~~~~~l~~--~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  273 (335)
T 2r3s_A          236 VLLPNFLHH--FDVATCEQLLRKIKTALAVEGKVIVFDFI  273 (335)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEEcchhcc--CCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence            999999997  35677889999999999999998887443

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.61  E-value=3.6e-15  Score=120.88  Aligned_cols=107  Identities=14%  Similarity=0.058  Sum_probs=89.0

Q ss_pred             HHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      ....+++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....+.. ++.+.++|+.+  .      .+++
T Consensus        55 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~--~------~~~~  125 (205)
T 3grz_A           55 ERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY-DIALQKTSLLA--D------VDGK  125 (205)
T ss_dssp             HHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-CCEEEESSTTT--T------CCSC
T ss_pred             HHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeccccc--c------CCCC
Confidence            3445688999999999999999988776679999999999999999998876543 38999999855  2      3579


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ||+|++...++.       ...+++++.++|+|||.+++..+.
T Consensus       126 fD~i~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~  161 (205)
T 3grz_A          126 FDLIVANILAEI-------LLDLIPQLDSHLNEDGQVIFSGID  161 (205)
T ss_dssp             EEEEEEESCHHH-------HHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred             ceEEEECCcHHH-------HHHHHHHHHHhcCCCCEEEEEecC
Confidence            999999875553       678999999999999999987443

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.61  E-value=7.5e-15  Score=123.59  Aligned_cols=124  Identities=19%  Similarity=0.159  Sum_probs=94.5

Q ss_pred             HHHHHHhcC---CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh
Q 025059           22 TALIKIYSH---PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (258)
Q Consensus        22 ~~li~~~~~---~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   98 (258)
                      +.++..++.   ++.+|||+|||+|..+..++..+..+++|+|+++.+++.|+++....+...++.++++|+.+...  .
T Consensus        37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~--~  114 (259)
T 3lpm_A           37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITD--L  114 (259)
T ss_dssp             HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGG--T
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhh--h
Confidence            456666654   68899999999999999888876669999999999999999999877665579999999865321  1


Q ss_pred             hhhcCCceeEEEeccccccc----------------cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059           99 MQEKANQADLVCCFQHLQMC----------------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~----------------~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +  +.++||+|+++...+..                ......+..++..+.++|+|||.+++..+..
T Consensus       115 ~--~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  179 (259)
T 3lpm_A          115 I--PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE  179 (259)
T ss_dssp             S--CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             h--ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH
Confidence            1  36899999996433211                0112456789999999999999999986543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.61  E-value=1.8e-14  Score=117.15  Aligned_cols=108  Identities=13%  Similarity=0.031  Sum_probs=87.6

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|..+..++.. ..+++|+|+|+.+++.|+++....+...++.++++|+.+...      ....||+
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~------~~~~~D~  125 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA------DLPLPEA  125 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT------TSCCCSE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc------cCCCCCE
Confidence            457889999999999999999888 559999999999999999998776554368999999865211      2357999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~  152 (258)
                      |++..++        ... +++++.++|+|||.+++..+....+
T Consensus       126 v~~~~~~--------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~  160 (204)
T 3njr_A          126 VFIGGGG--------SQA-LYDRLWEWLAPGTRIVANAVTLESE  160 (204)
T ss_dssp             EEECSCC--------CHH-HHHHHHHHSCTTCEEEEEECSHHHH
T ss_pred             EEECCcc--------cHH-HHHHHHHhcCCCcEEEEEecCcccH
Confidence            9987633        144 8999999999999999998876443

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.61  E-value=6.3e-15  Score=129.06  Aligned_cols=107  Identities=15%  Similarity=0.095  Sum_probs=88.9

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||||||+|.++..+++.+..+++|+|+|+ |++.|+++....+...++.++++|+.+.++      ++++||+
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------~~~~~D~  134 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL------PVEKVDV  134 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC------SCSCEEE
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC------CCCcEEE
Confidence            457889999999999999988888766999999996 999999998877654589999999987665      5689999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      |++.... +.+........++.++.++|+|||.++
T Consensus       135 Ivs~~~~-~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          135 IISEWMG-YFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             EEECCCB-TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEcCch-hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            9986532 223445667889999999999999997

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.61  E-value=2.5e-14  Score=115.81  Aligned_cols=108  Identities=12%  Similarity=0.001  Sum_probs=89.2

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      ..++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++....+. .++.++++|+.+...      ..++||
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~------~~~~~D  110 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLD------DLPDPD  110 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCT------TSCCCS
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhh------cCCCCC
Confidence            4578999999999999999998875 46999999999999999999876654 368999999854322      236799


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      +|++...++       ....+++++.++|+|||.+++..+...
T Consensus       111 ~i~~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~  146 (204)
T 3e05_A          111 RVFIGGSGG-------MLEEIIDAVDRRLKSEGVIVLNAVTLD  146 (204)
T ss_dssp             EEEESCCTT-------CHHHHHHHHHHHCCTTCEEEEEECBHH
T ss_pred             EEEECCCCc-------CHHHHHHHHHHhcCCCeEEEEEecccc
Confidence            999887654       367899999999999999999877643

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.61  E-value=2.6e-15  Score=131.97  Aligned_cols=108  Identities=15%  Similarity=0.094  Sum_probs=90.1

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||+|||+|.++..++..+..+|+|+|+| .|++.|+++....+...++.++++|+.+.++      +.++||+|
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~I  137 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVEL------PVEKVDII  137 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCC------SSSCEEEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccC------CCCceEEE
Confidence            4789999999999999999988877799999999 5999999999877665569999999988765      56899999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ++....+. +........++.++.++|+|||+++..
T Consensus       138 is~~~~~~-l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          138 ISEWMGYC-LFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             EECCCBBT-BTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             EEcccccc-ccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            98654332 333556788999999999999998643

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.60  E-value=2.1e-15  Score=126.23  Aligned_cols=103  Identities=23%  Similarity=0.277  Sum_probs=87.5

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++..      ++.+.++|+.+.+       ++++||+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~------~~~~~~~d~~~~~-------~~~~fD~   98 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLP------NTNFGKADLATWK-------PAQKADL   98 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHST------TSEEEECCTTTCC-------CSSCEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCC------CcEEEECChhhcC-------ccCCcCE
Confidence            46789999999999999988876 34589999999999999988721      6789999986643       3578999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |++..++|+.    ++...++.++.++|+|||.++++.++.
T Consensus        99 v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A           99 LYANAVFQWV----PDHLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             EEEESCGGGS----TTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             EEEeCchhhC----CCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            9999999973    347789999999999999999998764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.60  E-value=1.6e-14  Score=123.11  Aligned_cols=106  Identities=9%  Similarity=-0.041  Sum_probs=85.0

Q ss_pred             hcCCCCEEEEEcCCCCccHHHH-HHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKW-ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~-~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      -++++.+|||||||+|..+..+ ++....+|+|+|+|+.|++.|+++.+..+. .+++++++|+.+  +      ++++|
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~--l------~d~~F  189 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETV--I------DGLEF  189 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGG--G------GGCCC
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhh--C------CCCCc
Confidence            3468999999999999876444 443456999999999999999999887665 489999999854  2      35789


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |+|++...       .++...+++++.++|||||.+++.....
T Consensus       190 DvV~~~a~-------~~d~~~~l~el~r~LkPGG~Lvv~~~~~  225 (298)
T 3fpf_A          190 DVLMVAAL-------AEPKRRVFRNIHRYVDTETRIIYRTYTG  225 (298)
T ss_dssp             SEEEECTT-------CSCHHHHHHHHHHHCCTTCEEEEEECCG
T ss_pred             CEEEECCC-------ccCHHHHHHHHHHHcCCCcEEEEEcCcc
Confidence            99987553       1346789999999999999999886543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.60  E-value=6.4e-14  Score=122.87  Aligned_cols=107  Identities=25%  Similarity=0.220  Sum_probs=90.3

Q ss_pred             CCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      +.+|||+|||+|..+..++.. +..+++++|+ +.+++.|+++....+...++.+..+|+.+.+..     .++.||+|+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~D~v~  253 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF-----EGGAADVVM  253 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG-----TTCCEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc-----CCCCccEEE
Confidence            789999999999999999876 3458999999 889999999888765555799999998765410     245699999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +..++|+  .+.++...+++++.++|+|||.+++..
T Consensus       254 ~~~vlh~--~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          254 LNDCLHY--FDAREAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             EESCGGG--SCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Eeccccc--CCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            9999997  456778999999999999999998873

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.60  E-value=1.1e-15  Score=128.69  Aligned_cols=101  Identities=12%  Similarity=0.060  Sum_probs=86.0

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||||||+|..+..++..+ .+++|+|+|+.|++.|+++.       ++.++++|+.+.++      ++++||+|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~------~~~~fD~v   98 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLAL------PDKSVDGV   98 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCS------CTTCBSEE
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCC------CCCCEeEE
Confidence            578999999999999999998744 59999999999998876553       68999999977665      57899999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ++..++++.    .+...+++++.++|+ ||.+++..++.
T Consensus        99 ~~~~~l~~~----~~~~~~l~~~~~~Lk-gG~~~~~~~~~  133 (261)
T 3ege_A           99 ISILAIHHF----SHLEKSFQEMQRIIR-DGTIVLLTFDI  133 (261)
T ss_dssp             EEESCGGGC----SSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred             EEcchHhhc----cCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence            999999874    457789999999999 99888876654

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.60  E-value=2.5e-14  Score=124.64  Aligned_cols=106  Identities=17%  Similarity=0.049  Sum_probs=89.8

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      +..+|||+|||+|..+..++.. +..+++++|+ +.+++.|+++....+...++.+..+|+. .++      +. .||+|
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~------p~-~~D~v  239 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPL------PA-GAGGY  239 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCC------CC-SCSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCC------CC-CCcEE
Confidence            4689999999999999988876 3458999999 9999999999887655457999999986 333      33 89999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ++..++|+  .+.+....+++++.++|+|||.+++..+
T Consensus       240 ~~~~vlh~--~~~~~~~~~l~~~~~~L~pgG~l~i~e~  275 (332)
T 3i53_A          240 VLSAVLHD--WDDLSAVAILRRCAEAAGSGGVVLVIEA  275 (332)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             EEehhhcc--CCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence            99999997  4566789999999999999999998744

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.60  E-value=3.2e-14  Score=125.29  Aligned_cols=113  Identities=13%  Similarity=0.088  Sum_probs=92.2

Q ss_pred             HHHHHh-cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh
Q 025059           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (258)
Q Consensus        23 ~li~~~-~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (258)
                      .++..+ ..++.+|||+|||+|..+..++... ..+++++|+ +.+++.|++++...+...++.++.+|+.+.++     
T Consensus       181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----  254 (359)
T 1x19_A          181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-----  254 (359)
T ss_dssp             HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC-----
T ss_pred             HHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC-----
Confidence            344443 3467899999999999999998873 358999999 99999999998876544469999999977554     


Q ss_pred             hcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                       +  .+|+|++..++|+  .+.+....+++++.++|+|||.+++..
T Consensus       255 -~--~~D~v~~~~vlh~--~~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          255 -P--EADAVLFCRILYS--ANEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             -C--CCSEEEEESCGGG--SCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             -C--CCCEEEEechhcc--CCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence             2  2399999999987  356678999999999999999998774

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.59  E-value=1.4e-13  Score=121.74  Aligned_cols=105  Identities=19%  Similarity=0.144  Sum_probs=89.7

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|..+..++... ..+++++|+ +.+++.|++++...+...++.+..+|+. .++      +. .||+
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~------p~-~~D~  271 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETI------PD-GADV  271 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCC------CS-SCSE
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCC------CC-CceE
Confidence            467899999999999999998873 348999999 9999999999887655457999999986 333      33 8999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |++..++|+  .+.+....+++++.++|+|||.+++.
T Consensus       272 v~~~~vlh~--~~d~~~~~~L~~~~~~L~pgG~l~i~  306 (369)
T 3gwz_A          272 YLIKHVLHD--WDDDDVVRILRRIATAMKPDSRLLVI  306 (369)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             EEhhhhhcc--CCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            999999997  45677789999999999999999987

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.59  E-value=2.2e-14  Score=113.45  Aligned_cols=110  Identities=12%  Similarity=0.050  Sum_probs=86.3

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....+...++.++++|+.+.     ++...++||+|
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~fD~i  104 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA-----IDCLTGRFDLV  104 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH-----HHHBCSCEEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh-----HHhhcCCCCEE
Confidence            4678999999999999998888766799999999999999999988765444689999997431     11134679999


Q ss_pred             EeccccccccCCHHHHHHHHHHHH--hcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~--~~LkpgG~~i~~~~~~  149 (258)
                      ++....+     .......+..+.  ++|+|||++++.++..
T Consensus       105 ~~~~~~~-----~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A          105 FLDPPYA-----KETIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             EECCSSH-----HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             EECCCCC-----cchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence            9876543     234556667776  9999999999987665

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.59  E-value=2.3e-14  Score=117.10  Aligned_cols=116  Identities=16%  Similarity=0.062  Sum_probs=88.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      ..++.+|||||||+|..+..++... ..+++|+|+|+.+++.|+++....+. .++.++++|+.+.+  ..+  ++++||
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~~--~~~~~D  113 (214)
T 1yzh_A           39 GNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLT--DYF--EDGEID  113 (214)
T ss_dssp             TSCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGG--GTS--CTTCCS
T ss_pred             CCCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHH--hhc--CCCCCC
Confidence            3467899999999999999888774 45999999999999999999877654 27999999987633  111  467899


Q ss_pred             EEEeccccccccCCH----HHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          108 LVCCFQHLQMCFETE----ERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~----~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +|++.+...+.-...    .....++.++.++|+|||.+++.+.+.
T Consensus       114 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  159 (214)
T 1yzh_A          114 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR  159 (214)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH
T ss_pred             EEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH
Confidence            999987543210000    013579999999999999999987654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.59  E-value=1.8e-14  Score=114.61  Aligned_cols=113  Identities=17%  Similarity=0.066  Sum_probs=85.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....+...++.++++|+.+  ....++...++||+|
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~fD~i  120 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR--ALEQFYEEKLQFDLV  120 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH--HHHHHHHTTCCEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHH--HHHHHHhcCCCCCEE
Confidence            367899999999999999887776679999999999999999998776543468999999743  111111126789999


Q ss_pred             EeccccccccCCHHHHHHHHHHH--HhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCFETEERARRLLQNV--SSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i--~~~LkpgG~~i~~~~~~  149 (258)
                      ++....+.  ..   ....+..+  .++|+|||.+++..+..
T Consensus       121 ~~~~~~~~--~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          121 LLDPPYAK--QE---IVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             EECCCGGG--CC---HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             EECCCCCc--hh---HHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence            99866432  22   33444555  89999999999987765

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.58  E-value=4.6e-15  Score=121.99  Aligned_cols=115  Identities=16%  Similarity=0.175  Sum_probs=87.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||||||+|..+..++... ...++|+|+|+.+++.|+++....+.. ++.++++|+.+. +...+  ++++||.
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~-l~~~~--~~~~~d~  108 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEV-LHKMI--PDNSLRM  108 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHH-HHHHS--CTTCEEE
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHH-HHHHc--CCCChhe
Confidence            367899999999999999998764 358999999999999999998776543 689999997441 00011  5789999


Q ss_pred             EEeccccccccCCHHHH------HHHHHHHHhcccCCcEEEEEEcCch
Q 025059          109 VCCFQHLQMCFETEERA------RRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~------~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      |++.+...+  ......      ..+++++.++|+|||.+++.+.+..
T Consensus       109 v~~~~~~p~--~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~  154 (218)
T 3dxy_A          109 VQLFFPDPW--HKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEP  154 (218)
T ss_dssp             EEEESCCCC--CSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred             EEEeCCCCc--cchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence            998865443  111111      2599999999999999999876654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.58  E-value=3.2e-14  Score=134.73  Aligned_cols=112  Identities=20%  Similarity=0.326  Sum_probs=93.8

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCC--CeEEEEecChhHHHHHHHHHHhcC-----CCceeEEEEcCCCCCchhhhhhhc
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQR-----KNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      .++.+|||||||+|.++..++..+.  .+|+|+|+|+.|++.|++++....     ...++.++++|+.+.++      .
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~------~  793 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDS------R  793 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCT------T
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCc------c
Confidence            3788999999999999999987752  599999999999999998775321     11279999999988666      5


Q ss_pred             CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      .++||+|++..++++  ........+++++.++|+|| .+++++|+..
T Consensus       794 d~sFDlVV~~eVLeH--L~dp~l~~~L~eI~RvLKPG-~LIISTPN~e  838 (950)
T 3htx_A          794 LHDVDIGTCLEVIEH--MEEDQACEFGEKVLSLFHPK-LLIVSTPNYE  838 (950)
T ss_dssp             SCSCCEEEEESCGGG--SCHHHHHHHHHHHHHTTCCS-EEEEEECBGG
T ss_pred             cCCeeEEEEeCchhh--CChHHHHHHHHHHHHHcCCC-EEEEEecCch
Confidence            689999999999998  34566778999999999999 8889999874

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.58  E-value=4.1e-15  Score=120.61  Aligned_cols=110  Identities=12%  Similarity=0.029  Sum_probs=85.2

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCc-eeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQ-ADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~-fD~  108 (258)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++....+.. .++.++++|+.+...  .+  .+++ ||+
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~--~~--~~~~~fD~  128 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK--QP--QNQPHFDV  128 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT--SC--CSSCCEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHH--hh--ccCCCCCE
Confidence            57899999999999998877777679999999999999999998876542 378999999743111  00  2468 999


Q ss_pred             EEeccccccccCCHHHHHHHHHHH--HhcccCCcEEEEEEcCc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNV--SSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i--~~~LkpgG~~i~~~~~~  149 (258)
                      |++...++     ......++..+  .++|+|||.+++.....
T Consensus       129 I~~~~~~~-----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          129 VFLDPPFH-----FNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             EEECCCSS-----SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             EEECCCCC-----CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            99877633     23456777788  67899999999986654

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.58  E-value=1.2e-14  Score=118.83  Aligned_cols=107  Identities=11%  Similarity=0.009  Sum_probs=79.8

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .+++.+|||+|||+|..+..++... .++|+|+|+|+.|++.+.++.....   ++.++++|+........   ..++||
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~---~v~~~~~d~~~~~~~~~---~~~~fD  128 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYSG---IVEKVD  128 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTTT---TCCCEE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCC---CeEEEEcCCCCchhhcc---ccccee
Confidence            4578999999999999988887753 3589999999999877766655432   67888888865311000   237899


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      +|++...      .......+++++.++|||||.+++..+
T Consensus       129 ~V~~~~~------~~~~~~~~l~~~~r~LkpgG~l~i~~~  162 (210)
T 1nt2_A          129 LIYQDIA------QKNQIEILKANAEFFLKEKGEVVIMVK  162 (210)
T ss_dssp             EEEECCC------STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEecc------ChhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            9998732      123455679999999999999999853

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.58  E-value=1.4e-14  Score=118.52  Aligned_cols=116  Identities=15%  Similarity=0.095  Sum_probs=87.6

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      ..++.+|||||||+|..+..++.. +..+++|+|+|+.+++.|+++....+.. ++.++++|+.+.+  ..+  ++++||
T Consensus        36 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~--~~~--~~~~~d  110 (213)
T 2fca_A           36 GNDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLT--DVF--EPGEVK  110 (213)
T ss_dssp             TSCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHH--HHC--CTTSCC
T ss_pred             CCCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHH--hhc--CcCCcC
Confidence            346789999999999999998876 3459999999999999999998766542 6899999986522  112  467899


Q ss_pred             EEEeccccccccC-CH---HHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          108 LVCCFQHLQMCFE-TE---ERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       108 ~V~~~~~l~~~~~-~~---~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .|++.+...+.-. +.   .....+++++.++|+|||.+++.+.+.
T Consensus       111 ~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~  156 (213)
T 2fca_A          111 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR  156 (213)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH
T ss_pred             EEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            9988764432100 00   013678999999999999999987664

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.58  E-value=2.3e-15  Score=119.80  Aligned_cols=105  Identities=10%  Similarity=0.095  Sum_probs=84.1

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ++++..+|||||||+|.++..++.. +..+|+++|+|+.|++.+++++...+...++.+  +|.... .      +.++|
T Consensus        46 ~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~-~------~~~~~  116 (200)
T 3fzg_A           46 NIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD-V------YKGTY  116 (200)
T ss_dssp             HSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-H------TTSEE
T ss_pred             hcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-C------CCCCc
Confidence            4477889999999999999999776 334999999999999999999987765434555  665221 1      57899


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|++...+|+    .++.+..+..+.+.|+|||+||--
T Consensus       117 DvVLa~k~LHl----L~~~~~al~~v~~~L~pggvfISf  151 (200)
T 3fzg_A          117 DVVFLLKMLPV----LKQQDVNILDFLQLFHTQNFVISF  151 (200)
T ss_dssp             EEEEEETCHHH----HHHTTCCHHHHHHTCEEEEEEEEE
T ss_pred             ChhhHhhHHHh----hhhhHHHHHHHHHHhCCCCEEEEe
Confidence            99999999998    356667777999999999988643

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.58  E-value=7.2e-15  Score=130.37  Aligned_cols=107  Identities=16%  Similarity=0.092  Sum_probs=89.9

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||||||+|.++..++..+..+|+|+|+| .|++.|+++....+...++.++++|+.+.++      + ++||+|
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~-~~~D~I  133 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL------P-EKVDVI  133 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC------S-SCEEEE
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc------C-CcceEE
Confidence            4789999999999999999988877799999999 9999999999887665569999999876554      3 799999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ++....+ .+........++..+.++|+|||++++.
T Consensus       134 v~~~~~~-~l~~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          134 ISEWMGY-FLLRESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             EECCCBT-TBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             EEcChhh-cccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            9965444 3444556788999999999999999765

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.57  E-value=3.2e-14  Score=113.18  Aligned_cols=109  Identities=17%  Similarity=0.143  Sum_probs=88.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|..+..++... .+++|+|+|+.+++.|++++...+...++.+.++|+.+ .+    + ..++||+
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~----~-~~~~~D~  103 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-AL----C-KIPDIDI  103 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HH----T-TSCCEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hc----c-cCCCCCE
Confidence            4578899999999999998887777 69999999999999999998776543378899998643 12    1 1258999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~  151 (258)
                      |++...++.       ...+++++.++|+|||.+++..++...
T Consensus       104 v~~~~~~~~-------~~~~l~~~~~~l~~gG~l~~~~~~~~~  139 (192)
T 1l3i_A          104 AVVGGSGGE-------LQEILRIIKDKLKPGGRIIVTAILLET  139 (192)
T ss_dssp             EEESCCTTC-------HHHHHHHHHHTEEEEEEEEEEECBHHH
T ss_pred             EEECCchHH-------HHHHHHHHHHhcCCCcEEEEEecCcch
Confidence            999876554       578999999999999999998877543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.57  E-value=2.1e-14  Score=116.62  Aligned_cols=102  Identities=12%  Similarity=0.035  Sum_probs=85.8

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.|++++...+.. ++.+.++|+.....      ..++||+
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------~~~~~D~  146 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQ------ARAPFDA  146 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG------GGCCEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCc------cCCCccE
Confidence            4578999999999999999988874 59999999999999999998876543 68999999865433      3578999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++..++++...          ++.++|+|||.+++..++
T Consensus       147 i~~~~~~~~~~~----------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          147 IIVTAAPPEIPT----------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             EEESSBCSSCCT----------HHHHTEEEEEEEEEEECS
T ss_pred             EEEccchhhhhH----------HHHHhcccCcEEEEEEcC
Confidence            999998887432          578999999999999776

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.57  E-value=8.8e-14  Score=122.90  Aligned_cols=107  Identities=19%  Similarity=0.120  Sum_probs=89.5

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|..+..++... ..+++++|+ +.+++.|+++....+...++.++++|+.+ ++      + ..||+
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~------~-~~~D~  251 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL------P-VTADV  251 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC------S-CCEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cC------C-CCCCE
Confidence            467899999999999999988774 358999999 99999999998776554479999999864 33      2 34999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |++..++|+  ...+....+++++.++|+|||.+++..+
T Consensus       252 v~~~~vl~~--~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          252 VLLSFVLLN--WSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEeccccC--CCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            999999987  3456667999999999999999988755

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.57  E-value=1.6e-14  Score=125.89  Aligned_cols=107  Identities=17%  Similarity=0.103  Sum_probs=88.1

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|.++..+++.+..+++|+|+| .+++.|+++....+...++.++++|+.+.++      +.++||+
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------~~~~~D~  108 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHL------PFPKVDI  108 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCC------SSSCEEE
T ss_pred             hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccC------CCCcccE
Confidence            34788999999999999998888776799999999 6999999998877655579999999987655      4579999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      |++....+. +.....+..++.++.++|+|||.++
T Consensus       109 Ivs~~~~~~-l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          109 IISEWMGYF-LLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEECCCBTT-BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEeCchhh-cccHHHHHHHHHHHHhhcCCCeEEE
Confidence            998754332 3345567789999999999999997

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.57  E-value=7.9e-14  Score=123.75  Aligned_cols=112  Identities=14%  Similarity=0.118  Sum_probs=93.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...+.  .+.++++|+.+...      .+++||+|+
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~D~~~~~~------~~~~fD~Ii  303 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANAL--KAQALHSDVDEALT------EEARFDIIV  303 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTSC------TTCCEEEEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC--CeEEEEcchhhccc------cCCCeEEEE
Confidence            678999999999999999988865 999999999999999999987654  58999999876543      357999999


Q ss_pred             ecccccccc-CCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059          111 CFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (258)
Q Consensus       111 ~~~~l~~~~-~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~  151 (258)
                      ++..+|+.. ...+....+++++.++|+|||.+++.......
T Consensus       304 ~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~  345 (381)
T 3dmg_A          304 TNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLK  345 (381)
T ss_dssp             ECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSC
T ss_pred             ECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCC
Confidence            987776421 12466889999999999999999998776643

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.56  E-value=1.8e-13  Score=120.34  Aligned_cols=108  Identities=19%  Similarity=0.150  Sum_probs=89.5

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|..+..++... ..+++++|+ +.+++.|+++....+...++.++++|+.+ ++      + ..||+
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~------~-~~~D~  252 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL------P-RKADA  252 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC------S-SCEEE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CC------C-CCccE
Confidence            467899999999999999888774 348999999 99999999998776554479999999864 22      2 34999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++..++|+  ...+....+++++.++|+|||.+++..+.
T Consensus       253 v~~~~vl~~--~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          253 IILSFVLLN--WPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEcccccC--CCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            999999987  34666789999999999999999988544

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.56  E-value=4.9e-14  Score=119.78  Aligned_cols=112  Identities=13%  Similarity=0.137  Sum_probs=86.8

Q ss_pred             CCCEEEEEcCCC---CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh-------hhh
Q 025059           31 PYVTVCDLYCGA---GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-------TQM   99 (258)
Q Consensus        31 ~~~~VLDlGcG~---G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~   99 (258)
                      +..+|||||||+   |..+..+... +..+|+++|+|+.|++.|++++....   ++.++++|+.+....       ..+
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~---~v~~~~~D~~~~~~~~~~~~~~~~~  153 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDP---NTAVFTADVRDPEYILNHPDVRRMI  153 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCT---TEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCC---CeEEEEeeCCCchhhhccchhhccC
Confidence            447999999999   9776655554 34599999999999999999885432   789999999763211       111


Q ss_pred             hhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                        ...+||+|++..++|++-  .+....+++++.++|+|||+|+++....
T Consensus       154 --d~~~~d~v~~~~vlh~~~--d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          154 --DFSRPAAIMLVGMLHYLS--PDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             --CTTSCCEEEETTTGGGSC--TTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             --CCCCCEEEEEechhhhCC--cHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence              235899999999999842  2267889999999999999999985543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.56  E-value=1.6e-14  Score=113.17  Aligned_cols=111  Identities=8%  Similarity=0.035  Sum_probs=83.5

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .+++.+|||+|||+|..+..++..+. .++|+|+|+.+++.|+++....+.  ++.++++|+.+.  ........++||+
T Consensus        39 ~~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~--~~~~~~~~~~~D~  113 (171)
T 1ws6_A           39 YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVF--LPEAKAQGERFTV  113 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHH--HHHHHHTTCCEEE
T ss_pred             ccCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHH--HHhhhccCCceEE
Confidence            44678999999999999999988776 599999999999999999887654  788999987431  1111112358999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHH--hcccCCcEEEEEEcCch
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPDSS  150 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~--~~LkpgG~~i~~~~~~~  150 (258)
                      |++....+   ..   ...+++.+.  ++|+|||.+++.++...
T Consensus       114 i~~~~~~~---~~---~~~~~~~~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A          114 AFMAPPYA---MD---LAALFGELLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             EEECCCTT---SC---TTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred             EEECCCCc---hh---HHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence            99986544   11   223444444  99999999999877653

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.55  E-value=2.8e-14  Score=121.13  Aligned_cols=118  Identities=16%  Similarity=0.175  Sum_probs=86.0

Q ss_pred             HHHHHHHHHhcCCCCEEEEEcCCCCc----cHHHHHHc-C----CCeEEEEecChhHHHHHHHHHHh-------------
Q 025059           19 FAKTALIKIYSHPYVTVCDLYCGAGV----DVDKWETA-L----IANYIGIDVATSGIGEARDTWEN-------------   76 (258)
Q Consensus        19 ~~k~~li~~~~~~~~~VLDlGcG~G~----~~~~~~~~-~----~~~v~gvD~s~~~l~~a~~~~~~-------------   76 (258)
                      ++...++..  .++.+|||+|||||.    .+..++.. +    ..+++|+|+|+.||+.|++..-.             
T Consensus        95 ~l~~~llp~--~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~  172 (274)
T 1af7_A           95 ILAEHARRR--HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQ  172 (274)
T ss_dssp             HHHHHHHHS--CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHH
T ss_pred             HHHHHccCC--CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHH
Confidence            334444433  245799999999998    44444443 2    23899999999999999986410             


Q ss_pred             ------c--CCC---------ceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCC
Q 025059           77 ------Q--RKN---------FIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG  139 (258)
Q Consensus        77 ------~--~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg  139 (258)
                            .  ..+         .++.|.++|+.+.++.     ..++||+|+|..+++| | ..+....++.+++++|+||
T Consensus       173 ~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~-----~~~~fDlI~crnvliy-f-~~~~~~~vl~~~~~~L~pg  245 (274)
T 1af7_A          173 RYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYN-----VPGPFDAIFCRNVMIY-F-DKTTQEDILRRFVPLLKPD  245 (274)
T ss_dssp             HHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCC-----CCCCEEEEEECSSGGG-S-CHHHHHHHHHHHGGGEEEE
T ss_pred             HHhhccccCCCCceeechhhcccCeEEecccCCCCCC-----cCCCeeEEEECCchHh-C-CHHHHHHHHHHHHHHhCCC
Confidence                  0  000         1589999999775441     1478999999999987 3 4677899999999999999


Q ss_pred             cEEEEE
Q 025059          140 GYFLGI  145 (258)
Q Consensus       140 G~~i~~  145 (258)
                      |++++.
T Consensus       246 G~L~lg  251 (274)
T 1af7_A          246 GLLFAG  251 (274)
T ss_dssp             EEEEEC
T ss_pred             cEEEEE
Confidence            999874

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.55  E-value=1.2e-13  Score=109.14  Aligned_cols=105  Identities=9%  Similarity=-0.006  Sum_probs=85.9

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|..+..++. +..+++|+|+|+.+++.|+++....+. .++.++++|+.+ ++      ++++||+
T Consensus        33 ~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~-~~------~~~~~D~  103 (183)
T 2yxd_A           33 LNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED-VL------DKLEFNK  103 (183)
T ss_dssp             CCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH-HG------GGCCCSE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc-cc------cCCCCcE
Confidence            34778999999999999998877 556999999999999999999877654 268999999754 33      3478999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~  152 (258)
                      |++...        .....+++++.++  |||.+++..++...+
T Consensus       104 i~~~~~--------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~  137 (183)
T 2yxd_A          104 AFIGGT--------KNIEKIIEILDKK--KINHIVANTIVLENA  137 (183)
T ss_dssp             EEECSC--------SCHHHHHHHHHHT--TCCEEEEEESCHHHH
T ss_pred             EEECCc--------ccHHHHHHHHhhC--CCCEEEEEecccccH
Confidence            999875        2366788888888  999999998876544

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.55  E-value=2.6e-14  Score=125.48  Aligned_cols=107  Identities=16%  Similarity=0.084  Sum_probs=86.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|+++.+..+...++.++++|+.+.++       +++||+|
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-------~~~~D~I  120 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL-------PEQVDII  120 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC-------SSCEEEE
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC-------CCceeEE
Confidence            47899999999999999988887767999999996 889999988876654579999999877554       3689999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ++....++.  ..+.....+.++.++|+|||.+++..
T Consensus       121 vs~~~~~~~--~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          121 ISEPMGYML--FNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             EECCCBTTB--TTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             EEeCchhcC--ChHHHHHHHHHHHhhcCCCeEEEEec
Confidence            998665542  23345667788999999999998653

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.55  E-value=3.8e-14  Score=117.81  Aligned_cols=118  Identities=13%  Similarity=0.090  Sum_probs=83.6

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhc-----CCCceeEEEEcCCCC-Cchhhhhhh
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQ-----RKNFIAEFFEADPCA-ENFETQMQE  101 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~d~~~-~~~~~~~~~  101 (258)
                      ..++.+|||||||+|.++..++... ...++|+|+|+.|++.|+++....     ....++.++++|+.. .+  ..+  
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~--~~~--  119 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLP--NFF--  119 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHH--HHC--
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhh--hhC--
Confidence            3466789999999999999988763 458999999999999999876531     111268999999865 22  111  


Q ss_pred             cCCceeEEEeccccccccC-CHHH---HHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          102 KANQADLVCCFQHLQMCFE-TEER---ARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~-~~~~---~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      ++++||.|++.+.-.+.-. +...   ...+++++.++|+|||.+++.+....
T Consensus       120 ~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~  172 (235)
T 3ckk_A          120 YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLE  172 (235)
T ss_dssp             CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred             CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHH
Confidence            4689999987664332100 0000   14799999999999999999877653

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.55  E-value=4.3e-14  Score=116.86  Aligned_cols=107  Identities=14%  Similarity=0.090  Sum_probs=85.8

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ++||.+|||+|||+|.++..+++.  +.++|+|+|+|+.|++.++++.....   ++..+..|......   .+...+.+
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~---ni~~V~~d~~~p~~---~~~~~~~v  148 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR---NIFPILGDARFPEK---YRHLVEGV  148 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT---TEEEEESCTTCGGG---GTTTCCCE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc---CeeEEEEeccCccc---cccccceE
Confidence            469999999999999999999886  44699999999999999988876543   68888998866432   12246789


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |+|++....      ..+...++.++.+.|||||.+++...
T Consensus       149 DvVf~d~~~------~~~~~~~l~~~~r~LKpGG~lvI~ik  183 (233)
T 4df3_A          149 DGLYADVAQ------PEQAAIVVRNARFFLRDGGYMLMAIK  183 (233)
T ss_dssp             EEEEECCCC------TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEeccC------ChhHHHHHHHHHHhccCCCEEEEEEe
Confidence            999875433      23567899999999999999998743

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.55  E-value=3e-14  Score=121.29  Aligned_cols=110  Identities=14%  Similarity=0.022  Sum_probs=90.2

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (258)
                      .+...++++.+|||+|||+|.++..++..+..+++|+|+|+.+++.|+++...++...++.++++|+.+...       .
T Consensus       118 ~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-------~  190 (278)
T 2frn_A          118 RMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-------E  190 (278)
T ss_dssp             HHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-------C
T ss_pred             HHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-------c
Confidence            344556789999999999999999998887657999999999999999998877655468999999876442       5


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ++||+|++.....        ...++.++.++|+|||.+++....
T Consensus       191 ~~fD~Vi~~~p~~--------~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          191 NIADRILMGYVVR--------THEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             SCEEEEEECCCSS--------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCccEEEECCchh--------HHHHHHHHHHHCCCCeEEEEEEee
Confidence            7899998864321        357888999999999999987554

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.54  E-value=3.2e-13  Score=117.57  Aligned_cols=103  Identities=18%  Similarity=0.142  Sum_probs=86.7

Q ss_pred             CEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      .+|||+|||+|..+..++.. +..+++++|+ +.+++.|+++....+...++.++.+|+.+ ++       +++||+|++
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-------~~~~D~v~~  239 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EV-------PSNGDIYLL  239 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CC-------CSSCSEEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CC-------CCCCCEEEE
Confidence            89999999999999998876 3458999999 99999999987654333379999999866 33       367999999


Q ss_pred             ccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ..++|+  .+.+....+++++.++|+|||.+++..
T Consensus       240 ~~vl~~--~~~~~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          240 SRIIGD--LDEAASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             ESCGGG--CCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             chhccC--CCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999986  356677899999999999999999883

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.54  E-value=5.2e-14  Score=118.71  Aligned_cols=101  Identities=21%  Similarity=0.337  Sum_probs=84.4

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++..      ++.+.++|+...++      ++++||+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~------~~~~fD~  151 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP------QVTFCVASSHRLPF------SDTSMDA  151 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTSCSB------CTTCEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC------CcEEEEcchhhCCC------CCCceeE
Confidence            57889999999999999999887 24599999999999999988752      57899999877665      5679999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHH
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~  153 (258)
                      |++.++.           .++.++.++|+|||.+++..|+...+.
T Consensus       152 v~~~~~~-----------~~l~~~~~~L~pgG~l~~~~~~~~~~~  185 (269)
T 1p91_A          152 IIRIYAP-----------CKAEELARVVKPGGWVITATPGPRHLM  185 (269)
T ss_dssp             EEEESCC-----------CCHHHHHHHEEEEEEEEEEEECTTTTH
T ss_pred             EEEeCCh-----------hhHHHHHHhcCCCcEEEEEEcCHHHHH
Confidence            9987643           247899999999999999998876544

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.54  E-value=3e-14  Score=115.61  Aligned_cols=108  Identities=8%  Similarity=0.004  Sum_probs=83.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++....+. .++.++++|+.+     .++...++||+|+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~-----~~~~~~~~fD~V~  127 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMS-----FLAQKGTPHNIVF  127 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHH-----HHSSCCCCEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHH-----HHhhcCCCCCEEE
Confidence            5789999999999999887777766999999999999999999887654 378999999643     1111357899999


Q ss_pred             eccccccccCCHHHHHHHHHHHHh--cccCCcEEEEEEcCc
Q 025059          111 CFQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPDS  149 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~--~LkpgG~~i~~~~~~  149 (258)
                      +...++.     .....+++.+.+  +|+|||++++.....
T Consensus       128 ~~~p~~~-----~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          128 VDPPFRR-----GLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             ECCSSST-----TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             ECCCCCC-----CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            8765331     234556666654  699999999886554

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.54  E-value=6.4e-14  Score=115.46  Aligned_cols=101  Identities=12%  Similarity=0.052  Sum_probs=84.0

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.|+++....+   ++.+.++|+.....      ..++||+
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~------~~~~fD~  137 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYE------EEKPYDR  137 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCG------GGCCEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccc------cCCCccE
Confidence            4578899999999999999988876 599999999999999999987654   68999999754221      3578999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |++..++++..          .++.++|+|||.+++..++.
T Consensus       138 v~~~~~~~~~~----------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          138 VVVWATAPTLL----------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             EEESSBBSSCC----------HHHHHTEEEEEEEEEEECSS
T ss_pred             EEECCcHHHHH----------HHHHHHcCCCcEEEEEEcCC
Confidence            99999888632          36889999999999997764

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.54  E-value=1.1e-13  Score=122.17  Aligned_cols=107  Identities=14%  Similarity=0.023  Sum_probs=90.8

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC--chhhhhhhcCCce
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQEKANQA  106 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~f  106 (258)
                      .+..+|||||||+|..+..++.. +..+++++|+ +.+++.|+++....+...++.++.+|+.+.  ++      + ++|
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------p-~~~  249 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF------P-TGF  249 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC------C-CCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC------C-CCc
Confidence            36689999999999999999876 3458999999 999999999987665445799999999765  24      3 689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+|++..++|+  .+.++...+++++.++|+|||.+++..
T Consensus       250 D~v~~~~vlh~--~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          250 DAVWMSQFLDC--FSEEEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             SEEEEESCSTT--SCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CEEEEechhhh--CCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            99999999986  456778899999999999999998874

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.53  E-value=2.6e-14  Score=120.07  Aligned_cols=105  Identities=21%  Similarity=0.131  Sum_probs=85.7

Q ss_pred             HHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      .....++.+|||+|||+|.++..++..+. +++|+|+++.+++.|+++...++..  +.+.++|+...     +  +.++
T Consensus       115 ~~~~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-----~--~~~~  184 (254)
T 2nxc_A          115 ARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-----L--PFGP  184 (254)
T ss_dssp             HHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-----G--GGCC
T ss_pred             HHhcCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-----C--cCCC
Confidence            34467889999999999999998888777 9999999999999999998876543  78888886331     1  3578


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ||+|+++...+       ....++.++.++|+|||.++++.+
T Consensus       185 fD~Vv~n~~~~-------~~~~~l~~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          185 FDLLVANLYAE-------LHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             EEEEEEECCHH-------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCEEEECCcHH-------HHHHHHHHHHHHcCCCCEEEEEee
Confidence            99999865433       367899999999999999998743

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.53  E-value=6.3e-14  Score=124.05  Aligned_cols=110  Identities=15%  Similarity=0.058  Sum_probs=85.0

Q ss_pred             HhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHH-------hcCC-CceeEEEEcCCCCCchhh
Q 025059           27 IYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWE-------NQRK-NFIAEFFEADPCAENFET   97 (258)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~-------~~~~-~~~~~~~~~d~~~~~~~~   97 (258)
                      ..+.++.+|||||||+|..+..++.. +..+++|+|+|+.+++.|++..+       ..+. ..++.|+++|+.+.++..
T Consensus       169 l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d  248 (438)
T 3uwp_A          169 IKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE  248 (438)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc
Confidence            34568999999999999999988765 55469999999999999987542       2222 138999999998766522


Q ss_pred             hhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .    -..||+|+++..++     .++....|.++.++|||||.++++
T Consensus       249 ~----~~~aDVVf~Nn~~F-----~pdl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          249 R----IANTSVIFVNNFAF-----GPEVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             H----HHTCSEEEECCTTC-----CHHHHHHHHHHHTTSCTTCEEEES
T ss_pred             c----cCCccEEEEccccc-----CchHHHHHHHHHHcCCCCcEEEEe
Confidence            1    14799999875432     356788889999999999999987

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.52  E-value=1e-14  Score=120.28  Aligned_cols=97  Identities=16%  Similarity=0.228  Sum_probs=79.8

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCC-CCchhhhhhhc
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQMQEK  102 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~  102 (258)
                      ++....+++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++..      ++.++++|+. ..++      +
T Consensus        41 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~~------~  107 (226)
T 3m33_A           41 WLSRLLTPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANAP------HADVYEWNGKGELPA------G  107 (226)
T ss_dssp             HHHHHCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHCT------TSEEEECCSCSSCCT------T
T ss_pred             HHHhcCCCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhCC------CceEEEcchhhccCC------c
Confidence            3444567889999999999999999988754 99999999999999998821      6899999984 3443      4


Q ss_pred             -CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059          103 -ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus       103 -~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                       +++||+|++..          +...+++++.++|+|||.++
T Consensus       108 ~~~~fD~v~~~~----------~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          108 LGAPFGLIVSRR----------GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             CCCCEEEEEEES----------CCSGGGGGHHHHEEEEEEEE
T ss_pred             CCCCEEEEEeCC----------CHHHHHHHHHHHcCCCcEEE
Confidence             68999999863          24467889999999999998

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.52  E-value=1.1e-13  Score=115.19  Aligned_cols=105  Identities=17%  Similarity=0.152  Sum_probs=82.7

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      +++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+.. ++.++++|+.+.++.   +...++||+
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~---~~~~~~fD~  144 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQR---KDVRESYDI  144 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTC---TTTTTCEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhccc---ccccCCccE
Confidence            36789999999999999888764 4458999999999999999988776543 589999997442210   001578999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |++...        .+...+++.+.++|+|||.+++..
T Consensus       145 V~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~  174 (240)
T 1xdz_A          145 VTARAV--------ARLSVLSELCLPLVKKNGLFVALK  174 (240)
T ss_dssp             EEEECC--------SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEecc--------CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            998652        226789999999999999998874

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.52  E-value=3e-13  Score=109.43  Aligned_cols=101  Identities=12%  Similarity=0.012  Sum_probs=83.2

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+.. ++.+.++|+.+..       +.++||+|
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~-------~~~~~D~i  136 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP-------SEPPFDGV  136 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC-------CCSCEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCC-------ccCCcCEE
Confidence            4789999999999999998876 4469999999999999999998776543 4899999986643       35789999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ++.. ++       ....++.++.++|+|||.+++...
T Consensus       137 ~~~~-~~-------~~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          137 ISRA-FA-------SLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             ECSC-SS-------SHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             EEec-cC-------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence            8754 22       256899999999999999998854

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.51  E-value=7.8e-14  Score=122.19  Aligned_cols=111  Identities=18%  Similarity=0.195  Sum_probs=90.5

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|..+..++..+. .+++|+|+|+.|++.|+++....+.  ...+..+|+..  .      .+++||+
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~d~~~--~------~~~~fD~  264 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV--EGEVFASNVFS--E------VKGRFDM  264 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTT--T------CCSCEEE
T ss_pred             CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCEEEEccccc--c------ccCCeeE
Confidence            3567999999999999999888754 4899999999999999999887644  46778888754  2      3578999


Q ss_pred             EEecccccccc-CCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          109 VCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       109 V~~~~~l~~~~-~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      |++...+|+.. .+......+++++.++|+|||.+++..+...
T Consensus       265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  307 (343)
T 2pjd_A          265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL  307 (343)
T ss_dssp             EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred             EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence            99998877422 1345678999999999999999999977653

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.51  E-value=9.4e-14  Score=114.77  Aligned_cols=105  Identities=16%  Similarity=0.061  Sum_probs=81.5

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      ..++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....   .++.++++|+.....  ..+ ..++||
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~--~~~-~~~~~D  145 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQE--YAN-IVEKVD  145 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGG--GTT-TSCCEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCccc--ccc-cCccEE
Confidence            347889999999999999998877 4469999999999999999887654   278999999876211  000 127899


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|++.      +........++.++.++|+|||.+++.
T Consensus       146 ~v~~~------~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          146 VIYED------VAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEC------CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEe------cCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            99832      123344577899999999999999986

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.50  E-value=1e-13  Score=114.80  Aligned_cols=104  Identities=10%  Similarity=0.085  Sum_probs=83.8

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|||||||+|..+..++.. +..+++++|+++.+++.|++++...+...++.++++|+.+..  +.  ..+++||+|
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~--~~~~~fD~V  146 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQF--EN--VNDKVYDMI  146 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCH--HH--HTTSCEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH--Hh--hccCCccEE
Confidence            6789999999999999988774 346999999999999999999987765447999999985421  10  125799999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ++.....       ....+++.+.++|+|||++++.
T Consensus       147 ~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          147 FIDAAKA-------QSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             EEETTSS-------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEcCcHH-------HHHHHHHHHHHhcCCCeEEEEe
Confidence            8765332       2667999999999999999885

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.50  E-value=7.4e-14  Score=117.73  Aligned_cols=128  Identities=17%  Similarity=0.076  Sum_probs=94.0

Q ss_pred             HHHHHHHHhcC--CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHh---cCCCceeEEEEcCCCCC
Q 025059           20 AKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWEN---QRKNFIAEFFEADPCAE   93 (258)
Q Consensus        20 ~k~~li~~~~~--~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~~~~~d~~~~   93 (258)
                      +-.+++..++.  ++.+|||+|||+|..+..++... ..+++|+|+++.+++.|+++...   .+...++.++++|+.+.
T Consensus        23 ~D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~  102 (260)
T 2ozv_A           23 MDAMLLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLR  102 (260)
T ss_dssp             CHHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCC
T ss_pred             cHHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHH
Confidence            45566666654  67899999999999998888774 35899999999999999999876   55544699999999764


Q ss_pred             chhh---hhhhcCCceeEEEeccccccc--------------cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059           94 NFET---QMQEKANQADLVCCFQHLQMC--------------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus        94 ~~~~---~~~~~~~~fD~V~~~~~l~~~--------------~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ....   .+  +.++||+|+++...+..              .........+++.+.++|+|||.+++..+..
T Consensus       103 ~~~~~~~~~--~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  173 (260)
T 2ozv_A          103 AKARVEAGL--PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ  173 (260)
T ss_dssp             HHHHHHTTC--CTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             hhhhhhhcc--CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH
Confidence            2100   01  35789999997432210              0111236788999999999999999887654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=1.7e-13  Score=111.72  Aligned_cols=104  Identities=13%  Similarity=0.012  Sum_probs=83.8

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC-C-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL-I-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..++.+|||+|||+|..+..++... . .+++++|+|+.+++.|+++....+.. ++.+.++|+.....      ..++|
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------~~~~f  147 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYE------PLAPY  147 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCG------GGCCE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCC------CCCCe
Confidence            4578899999999999999888764 2 59999999999999999988765432 58899999733211      25689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |+|++..++++..          .++.++|+|||.+++.+++.
T Consensus       148 D~v~~~~~~~~~~----------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          148 DRIYTTAAGPKIP----------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             EEEEESSBBSSCC----------HHHHHTEEEEEEEEEEESSS
T ss_pred             eEEEECCchHHHH----------HHHHHHcCCCcEEEEEECCC
Confidence            9999999888632          47899999999999997764

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.50  E-value=4.1e-14  Score=116.82  Aligned_cols=120  Identities=24%  Similarity=0.176  Sum_probs=82.3

Q ss_pred             HHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecC-hhHHHHH---HHHHHhcCCCceeEEEEcCCCCCch
Q 025059           21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVA-TSGIGEA---RDTWENQRKNFIAEFFEADPCAENF   95 (258)
Q Consensus        21 k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s-~~~l~~a---~~~~~~~~~~~~~~~~~~d~~~~~~   95 (258)
                      ...++.....++.+|||||||+|..+..++.. +..+++|+|+| +.|++.|   +++....+.. ++.+.++|+...+.
T Consensus        14 ~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~   92 (225)
T 3p2e_A           14 KDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPF   92 (225)
T ss_dssp             HHHHHHHHTTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCG
T ss_pred             HHHHHHHhCCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhh
Confidence            34455566678899999999999999998764 34589999999 6777766   6665554432 68999999876532


Q ss_pred             hhhhhhcCCceeEEEeccccccccCC-HHHHHHHHHHHHhcccCCcEEEEEE
Q 025059           96 ETQMQEKANQADLVCCFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~-~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      .     ..+.+|.|.+.+........ ......++.++.++|||||.+++.+
T Consensus        93 ~-----~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A           93 E-----LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             G-----GTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             h-----ccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            1     13566666665432210000 0012468999999999999999853

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.50  E-value=7.3e-14  Score=123.34  Aligned_cols=104  Identities=16%  Similarity=0.090  Sum_probs=87.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||||||+|.++..+++.+..+|+|+|.|+ |++.|++....+++..++.++++|+.+..+       ++++|+|+
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l-------pe~~Dviv  154 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL-------PEQVDAIV  154 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC-------SSCEEEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC-------CccccEEE
Confidence            6899999999999988888888888999999986 889999998888777789999999987665       47899999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      +-.. .+.+..+..+..++....+.|+|||.++
T Consensus       155 sE~~-~~~l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          155 SEWM-GYGLLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             CCCC-BTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             eecc-cccccccchhhhHHHHHHhhCCCCceEC
Confidence            8542 2334446668889999999999999986

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.50  E-value=3.2e-13  Score=110.82  Aligned_cols=110  Identities=12%  Similarity=0.054  Sum_probs=83.9

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCCce
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~f  106 (258)
                      ++.+|||||||+|..+..++..  ...+++++|+++.+++.|++++...+...+++++++|+.+.  .+.+..  ..++|
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~f  135 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDL--IPQLKKKYDVDTL  135 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH--GGGTTTTSCCCCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHH--HHHHHHhcCCCce
Confidence            6789999999999999998875  24699999999999999999988776554799999996331  111100  12689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |+|++....+.    ......++..+ ++|+|||++++...
T Consensus       136 D~V~~d~~~~~----~~~~~~~~~~~-~~LkpgG~lv~~~~  171 (221)
T 3u81_A          136 DMVFLDHWKDR----YLPDTLLLEKC-GLLRKGTVLLADNV  171 (221)
T ss_dssp             SEEEECSCGGG----HHHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred             EEEEEcCCccc----chHHHHHHHhc-cccCCCeEEEEeCC
Confidence            99998876554    34455677777 99999999998733

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.50  E-value=1.2e-13  Score=114.14  Aligned_cols=107  Identities=12%  Similarity=0.059  Sum_probs=83.2

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..++.+|||+|||+|.++..++..  +..+++|+|+|+.|++.+.+......   ++.++++|+.+...   ++...++|
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~---~v~~~~~d~~~~~~---~~~~~~~~  148 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRT---NIIPVIEDARHPHK---YRMLIAMV  148 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCT---TEEEECSCTTCGGG---GGGGCCCE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccC---CeEEEEcccCChhh---hcccCCcE
Confidence            457889999999999999999876  34699999999999888877766542   78999999876321   11136789


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |+|++...      .......++.++.++|+|||.+++.+.
T Consensus       149 D~V~~~~~------~~~~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          149 DVIFADVA------QPDQTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             EEEEECCC------CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEcCC------CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence            99998553      233456678899999999999999754

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.50  E-value=2.2e-13  Score=121.21  Aligned_cols=123  Identities=11%  Similarity=0.063  Sum_probs=93.6

Q ss_pred             HHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCc-eeEEEEcCCCCCchhhhhhhcCC
Q 025059           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      ..++.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++.+.++... ++.++++|+.+  +.+.+.....
T Consensus       207 ~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~--~l~~~~~~~~  284 (385)
T 2b78_A          207 INGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD--YFKYARRHHL  284 (385)
T ss_dssp             HHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH--HHHHHHHTTC
T ss_pred             HHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHH--HHHHHHHhCC
Confidence            33335688999999999999999988776699999999999999999998876543 68999999743  1111211246


Q ss_pred             ceeEEEecccc-----ccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          105 QADLVCCFQHL-----QMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       105 ~fD~V~~~~~l-----~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      +||+|++.-..     ............++..+.++|+|||++++.+....
T Consensus       285 ~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~  335 (385)
T 2b78_A          285 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  335 (385)
T ss_dssp             CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            89999985322     22334456678889999999999999999876654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.49  E-value=5.2e-13  Score=111.70  Aligned_cols=107  Identities=9%  Similarity=0.040  Sum_probs=84.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ++.+|||||||+|..+..++.. + ..+++++|+|+.+++.|++++...+...++.++++|+.+.  .+.+ ...++||+
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~--l~~~-~~~~~fD~  139 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS--LESL-GECPAFDL  139 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH--HHTC-CSCCCCSE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--HHhc-CCCCCeEE
Confidence            6789999999999999988876 2 4699999999999999999998776555799999997431  1111 02358999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |++....       .....+++++.++|+|||++++...
T Consensus       140 V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          140 IFIDADK-------PNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             EEECSCG-------GGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             EEECCch-------HHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            9886532       3356789999999999999998733

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.49  E-value=2.3e-13  Score=120.53  Aligned_cols=116  Identities=16%  Similarity=0.155  Sum_probs=89.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCC--ceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      ++.+|||+|||+|.++..++... ..+++|+|+|+.+++.|+++...++..  .++.+..+|+.+ .+      ++++||
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~------~~~~fD  294 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GV------EPFRFN  294 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TC------CTTCEE
T ss_pred             CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cC------CCCCee
Confidence            55899999999999999998874 469999999999999999998776432  258889999866 22      467999


Q ss_pred             EEEeccccccccC-CHHHHHHHHHHHHhcccCCcEEEEEEcCchHHH
Q 025059          108 LVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (258)
Q Consensus       108 ~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~  153 (258)
                      +|++...+|.... .......+++++.++|+|||.+++.........
T Consensus       295 ~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~  341 (375)
T 4dcm_A          295 AVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYF  341 (375)
T ss_dssp             EEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHH
T ss_pred             EEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHH
Confidence            9999887764111 112345789999999999999999876654433

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.49  E-value=3.2e-13  Score=111.31  Aligned_cols=115  Identities=10%  Similarity=-0.097  Sum_probs=93.2

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      .+..+++++.+|||||||+|..+..++..+. .+++++|+++.+++.|+++...++...++.+.++|+.+...      +
T Consensus        14 ~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~------~   87 (230)
T 3lec_A           14 KVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE------E   87 (230)
T ss_dssp             HHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC------G
T ss_pred             HHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc------c
Confidence            4567888999999999999999999988764 58999999999999999999988776679999999754322      2


Q ss_pred             CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      .++||+|++...      ..+....++......|+++|.||++.....
T Consensus        88 ~~~~D~IviaGm------Gg~lI~~IL~~~~~~l~~~~~lIlqp~~~~  129 (230)
T 3lec_A           88 ADNIDTITICGM------GGRLIADILNNDIDKLQHVKTLVLQPNNRE  129 (230)
T ss_dssp             GGCCCEEEEEEE------CHHHHHHHHHHTGGGGTTCCEEEEEESSCH
T ss_pred             ccccCEEEEeCC------chHHHHHHHHHHHHHhCcCCEEEEECCCCh
Confidence            347999876442      235577899999999999999999866553

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.49  E-value=2.9e-13  Score=110.97  Aligned_cols=107  Identities=13%  Similarity=0.063  Sum_probs=84.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc-CCcee
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQAD  107 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~fD  107 (258)
                      ++.+|||||||+|..+..++...  ..+++++|+++.+++.|++++...+...++.++++|+.+  ..+.+... .++||
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~fD  135 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD--SLQQIENEKYEPFD  135 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH--HHHHHHHTTCCCCS
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--HHHHHHhcCCCCcC
Confidence            67899999999999999988762  459999999999999999999876655469999999743  11112111 26799


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +|++.....       ....+++++.++|+|||++++..
T Consensus       136 ~v~~d~~~~-------~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          136 FIFIDADKQ-------NNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             EEEECSCGG-------GHHHHHHHHHHTCCTTCEEEEES
T ss_pred             EEEEcCCcH-------HHHHHHHHHHHhcCCCcEEEEeC
Confidence            998866433       35689999999999999998873

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.48  E-value=5.5e-15  Score=122.76  Aligned_cols=103  Identities=20%  Similarity=0.185  Sum_probs=83.6

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|++++...+...++.++++|+.+.+       ++++||+|+
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D~v~  149 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-------SFLKADVVF  149 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-------GGCCCSEEE
T ss_pred             CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-------ccCCCCEEE
Confidence            68999999999999999998877 5999999999999999999887654347999999974422       357999999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +...+++    .......+.++.++|+|||.+++.
T Consensus       150 ~~~~~~~----~~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          150 LSPPWGG----PDYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             ECCCCSS----GGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             ECCCcCC----cchhhhHHHHHHhhcCCcceeHHH
Confidence            9887765    222334677899999999986543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.48  E-value=4.7e-13  Score=111.18  Aligned_cols=123  Identities=9%  Similarity=-0.065  Sum_probs=96.0

Q ss_pred             HHHHHhcCCCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh
Q 025059           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (258)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (258)
                      ..+..+++++.+|||||||+|..+..++..+. .+++++|+++.+++.|+++...++...++.+.++|+.+...      
T Consensus        13 ~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~------   86 (244)
T 3gnl_A           13 EKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE------   86 (244)
T ss_dssp             HHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC------
T ss_pred             HHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC------
Confidence            34567888999999999999999999988764 48999999999999999999888766579999999754321      


Q ss_pred             cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch-HHHHHHH
Q 025059          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS-TIWAKYQ  157 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~-~~~~~~~  157 (258)
                      +..+||+|++...      ..+....++....+.|+++|.||++..... .+.+.+.
T Consensus        87 ~~~~~D~Iviagm------Gg~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~  137 (244)
T 3gnl_A           87 KKDAIDTIVIAGM------GGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSE  137 (244)
T ss_dssp             GGGCCCEEEEEEE------CHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHH
T ss_pred             ccccccEEEEeCC------chHHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHH
Confidence            2236999876432      245578899999999999999999865553 4443333

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.48  E-value=2.3e-13  Score=124.16  Aligned_cols=106  Identities=16%  Similarity=0.092  Sum_probs=85.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||||||+|..+..++..+..+|+|+|+|+ +++.|+++....+...++.++++|+.+.++       .++||+|
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~-------~~~fD~I  228 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL-------PEQVDII  228 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC-------SSCEEEE
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc-------CCCeEEE
Confidence            36789999999999999988887667999999998 999999998877654579999999976543       3689999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ++...+++ +. .+.....+.++.++|+|||.+++.
T Consensus       229 vs~~~~~~-~~-~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          229 ISEPMGYM-LF-NERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             ECCCCHHH-HT-CHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEeCchHh-cC-cHHHHHHHHHHHHhcCCCCEEEEE
Confidence            99765443 22 244566777899999999999854

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.47  E-value=1.7e-14  Score=116.90  Aligned_cols=114  Identities=14%  Similarity=0.049  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|..+..++.... .+++|+|+|+.+++.|+++....+.  ++.++++|+.+ ++.. .....++||+
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~-~~~~-~~~~~~~fD~  104 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIE-WLIE-RAERGRPWHA  104 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHH-HHHH-HHHTTCCBSE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHh-hhhh-hhhccCcccE
Confidence            5788999999999999999988743 4999999999999999998876543  67788888644 2210 0002389999


Q ss_pred             EEecccccccc----------------------CCHHHHHHHHHHHHhcccCCcE-EEEEEc
Q 025059          109 VCCFQHLQMCF----------------------ETEERARRLLQNVSSLLKPGGY-FLGITP  147 (258)
Q Consensus       109 V~~~~~l~~~~----------------------~~~~~~~~~l~~i~~~LkpgG~-~i~~~~  147 (258)
                      |++....+..-                      ...+....+++++.++|+|||. +++..+
T Consensus       105 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A          105 IVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             EEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred             EEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            99964332110                      0011127889999999999999 655544

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.47  E-value=2.4e-13  Score=111.68  Aligned_cols=105  Identities=15%  Similarity=0.129  Sum_probs=83.3

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CC-CeEEEEecChhHHHHHHHHHHhcCC----CceeEEEEcCCCCCchhhhhhhc
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      ..++.+|||+|||+|..+..++.. +. .+++++|+++.+++.|+++....+.    ..++.+.++|+.....      .
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~  148 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA------E  148 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG------G
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc------c
Confidence            568899999999999999888776 33 5999999999999999998876421    1268999999754332      3


Q ss_pred             CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .++||+|++...++.          ++.++.++|+|||.++++++..
T Consensus       149 ~~~fD~i~~~~~~~~----------~~~~~~~~LkpgG~lv~~~~~~  185 (226)
T 1i1n_A          149 EAPYDAIHVGAAAPV----------VPQALIDQLKPGGRLILPVGPA  185 (226)
T ss_dssp             GCCEEEEEECSBBSS----------CCHHHHHTEEEEEEEEEEESCT
T ss_pred             CCCcCEEEECCchHH----------HHHHHHHhcCCCcEEEEEEecC
Confidence            568999999887654          2467889999999999986653

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.47  E-value=4.1e-13  Score=118.06  Aligned_cols=117  Identities=18%  Similarity=0.161  Sum_probs=91.8

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      .+++.+|||+|||+|.++..++...  ..+++|+|+++.+++.|+++++..+.. ++.+.++|+.+.+.      +...|
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~------~~~~~  273 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPR------FFPEV  273 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGG------TCCCC
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcc------ccCCC
Confidence            4578899999999999999888753  358999999999999999999887665 78999999866443      45679


Q ss_pred             eEEEeccccccccCC----HHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059          107 DLVCCFQHLQMCFET----EERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (258)
Q Consensus       107 D~V~~~~~l~~~~~~----~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~  152 (258)
                      |+|+++.........    ......+++++.++|+|||.+++.+++...+
T Consensus       274 D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~  323 (354)
T 3tma_A          274 DRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALL  323 (354)
T ss_dssp             SEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHH
T ss_pred             CEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHH
Confidence            999996543321111    1234789999999999999999999886443

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.47  E-value=5.9e-13  Score=109.47  Aligned_cols=121  Identities=11%  Similarity=-0.015  Sum_probs=94.2

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      .+..+++++.+|||||||+|..+..++..+. .+++++|+++.+++.|+++...++...++++.++|..+. +    + +
T Consensus         8 ~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~-l----~-~   81 (225)
T 3kr9_A            8 LVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA-F----E-E   81 (225)
T ss_dssp             HHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG-C----C-G
T ss_pred             HHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh-c----c-c
Confidence            4567788999999999999999999988753 589999999999999999999887665799999997431 1    0 1


Q ss_pred             CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch-HHHHHH
Q 025059          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS-TIWAKY  156 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~-~~~~~~  156 (258)
                      ..+||+|++..+      .......++......|+++|.+++...... .+.+.+
T Consensus        82 ~~~~D~IviaG~------Gg~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L  130 (225)
T 3kr9_A           82 TDQVSVITIAGM------GGRLIARILEEGLGKLANVERLILQPNNREDDLRIWL  130 (225)
T ss_dssp             GGCCCEEEEEEE------CHHHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHH
T ss_pred             CcCCCEEEEcCC------ChHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH
Confidence            226999876542      234478899999999999999999865543 333333

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.47  E-value=3.2e-13  Score=111.01  Aligned_cols=108  Identities=12%  Similarity=0.049  Sum_probs=84.0

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCC------CeEEEEecChhHHHHHHHHHHhcCC----CceeEEEEcCCCCCchhhh
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALI------ANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFETQ   98 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~------~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~   98 (258)
                      ..++.+|||+|||+|..+..++....      .+++|+|+++.+++.|+++....+.    ..++.+.++|+........
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            56789999999999999988877642      4999999999999999999876531    1268999999865330000


Q ss_pred             hhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      .  ..++||+|++...++.          ++.++.++|+|||.+++..+.
T Consensus       158 ~--~~~~fD~I~~~~~~~~----------~~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          158 K--ELGLFDAIHVGASASE----------LPEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             H--HHCCEEEEEECSBBSS----------CCHHHHHHEEEEEEEEEEEEE
T ss_pred             c--cCCCcCEEEECCchHH----------HHHHHHHhcCCCcEEEEEEcc
Confidence            1  3478999999887765          247788999999999998664

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.47  E-value=3.7e-13  Score=110.38  Aligned_cols=107  Identities=17%  Similarity=0.092  Sum_probs=83.6

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc--CCce
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--ANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~f  106 (258)
                      ++.+|||+|||+|..+..++.. + ..+++++|+++.+++.|++++...+...++.++++|+.+.  .+.+...  .++|
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~f  141 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT--LAELIHAGQAWQY  141 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH--HHHHHTTTCTTCE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH--HHHhhhccCCCCc
Confidence            6789999999999999999876 2 4699999999999999999998776554699999997331  1111101  1789


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+|++...       ......+++++.++|+|||++++..
T Consensus       142 D~v~~~~~-------~~~~~~~l~~~~~~L~pgG~lv~~~  174 (225)
T 3tr6_A          142 DLIYIDAD-------KANTDLYYEESLKLLREGGLIAVDN  174 (225)
T ss_dssp             EEEEECSC-------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cEEEECCC-------HHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            99986553       2336779999999999999999873

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.47  E-value=1.4e-13  Score=120.65  Aligned_cols=110  Identities=19%  Similarity=0.075  Sum_probs=82.2

Q ss_pred             HHHHh-cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh
Q 025059           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (258)
Q Consensus        24 li~~~-~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (258)
                      ++..+ .+++.+|||||||+|..+..++... ..+++++|++ .++.  +++....+...++.++.+|+. .++      
T Consensus       176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~------  245 (348)
T 3lst_A          176 LARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFL-REV------  245 (348)
T ss_dssp             HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTT-TCC------
T ss_pred             HHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCC-CCC------
Confidence            44443 3467899999999999999998763 3489999994 4444  222222222337999999986 333      


Q ss_pred             cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      +  +||+|++..++|+  .+.++...+++++.++|+|||.+++..+
T Consensus       246 p--~~D~v~~~~vlh~--~~d~~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          246 P--HADVHVLKRILHN--WGDEDSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             C--CCSEEEEESCGGG--SCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             C--CCcEEEEehhccC--CCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            3  8999999999997  4566678999999999999999998743

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.47  E-value=4.4e-13  Score=116.90  Aligned_cols=127  Identities=16%  Similarity=0.108  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCc-eeEEEEcCCCCCchh
Q 025059           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFE   96 (258)
Q Consensus        18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~   96 (258)
                      .|+...+..  ..++.+|||+|||+|.++..++..+. +++++|+|+.+++.|+++...++... ++.++++|+.+.  .
T Consensus       142 ~~l~~~~~~--~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~--l  216 (332)
T 2igt_A          142 EWLKNAVET--ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF--I  216 (332)
T ss_dssp             HHHHHHHHH--SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH--H
T ss_pred             HHHHHHHHh--cCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHH--H
Confidence            455544321  34678999999999999999988777 99999999999999999988765432 489999997432  1


Q ss_pred             hhhhhcCCceeEEEeccc---cc---cccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059           97 TQMQEKANQADLVCCFQH---LQ---MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~---l~---~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .......++||+|++...   ..   ..+........++..+.++|+|||.++++....
T Consensus       217 ~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          217 QREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             HHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            111112578999998432   11   012235677899999999999999987775443

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.46  E-value=2e-13  Score=114.34  Aligned_cols=105  Identities=13%  Similarity=-0.006  Sum_probs=83.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|||||||+|..+..++.. +..+|+++|+|+.+++.|+++....+.. ++.++++|+.+.+...   ...++||+|
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~---~~~~~fD~I  155 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREA---GHREAYARA  155 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTST---TTTTCEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhccc---ccCCCceEE
Confidence            5789999999999998888776 4569999999999999999998877654 5899999974422100   024799999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ++....        ....+++.+.++|+|||.+++...
T Consensus       156 ~s~a~~--------~~~~ll~~~~~~LkpgG~l~~~~g  185 (249)
T 3g89_A          156 VARAVA--------PLCVLSELLLPFLEVGGAAVAMKG  185 (249)
T ss_dssp             EEESSC--------CHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             EECCcC--------CHHHHHHHHHHHcCCCeEEEEEeC
Confidence            986421        256889999999999999988753

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.46  E-value=5.4e-13  Score=111.55  Aligned_cols=108  Identities=16%  Similarity=0.140  Sum_probs=88.2

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..++.+|||+|||+|.++..++.. + ..+++++|+|+.+++.|++++...+...++.+.++|+.+. +      ++++|
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~------~~~~~  163 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-I------EEENV  163 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-C------CCCSE
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-c------CCCCc
Confidence            457899999999999999999887 3 4699999999999999999988765543599999998642 2      46789


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~  152 (258)
                      |+|++...         ....+++++.++|+|||.+++..+.....
T Consensus       164 D~v~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  200 (255)
T 3mb5_A          164 DHVILDLP---------QPERVVEHAAKALKPGGFFVAYTPCSNQV  200 (255)
T ss_dssp             EEEEECSS---------CGGGGHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred             CEEEECCC---------CHHHHHHHHHHHcCCCCEEEEEECCHHHH
Confidence            99987432         23568999999999999999998876543

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.46  E-value=2.6e-13  Score=113.42  Aligned_cols=114  Identities=16%  Similarity=0.064  Sum_probs=82.9

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHhc---CCCce----------------------
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQ---RKNFI----------------------   82 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~----------------------   82 (258)
                      ++.+|||+|||+|.++..++..   +..+++|+|+|+.+++.|+++....   +...+                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            5679999999999999888775   2348999999999999999876543   11101                      


Q ss_pred             ---eE-------------EEEcCCCCCchhhhhhhcCCceeEEEeccccccccC-----CHHHHHHHHHHHHhcccCCcE
Q 025059           83 ---AE-------------FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE-----TEERARRLLQNVSSLLKPGGY  141 (258)
Q Consensus        83 ---~~-------------~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-----~~~~~~~~l~~i~~~LkpgG~  141 (258)
                         +.             +.++|+.+....... ....+||+|+|....++...     ..+....+++++.++|+|||+
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  209 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAV-LAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV  209 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHH-HTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred             hhhhhhhccccccccccceeecccccccccccc-cCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence               55             999998652210000 01348999999865554221     246788999999999999999


Q ss_pred             EEEE
Q 025059          142 FLGI  145 (258)
Q Consensus       142 ~i~~  145 (258)
                      ++++
T Consensus       210 l~~~  213 (250)
T 1o9g_A          210 IAVT  213 (250)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9984

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.46  E-value=4.7e-13  Score=111.67  Aligned_cols=115  Identities=17%  Similarity=0.159  Sum_probs=83.3

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhc--------CCCceeEEEEcCCCCCchhhhhh
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQ--------RKNFIAEFFEADPCAENFETQMQ  100 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~  100 (258)
                      +++.+|||||||+|.++..++.... ..++|+|+|+.+++.|+++....        +. .++.++++|+.+. +...+ 
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~-l~~~~-  124 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKF-LPNFF-  124 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSC-GGGTS-
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHH-HHHhc-
Confidence            3678999999999999999988754 48999999999999999887653        32 2789999998651 11111 


Q ss_pred             hcCCceeEEEeccccccccCCHHH-----HHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          101 EKANQADLVCCFQHLQMCFETEER-----ARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~-----~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                       ..+++|.|++.+.-.+ +.....     ...++.++.++|+|||.+++.+...
T Consensus       125 -~~~~~d~v~~~~p~p~-~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~  176 (246)
T 2vdv_E          125 -EKGQLSKMFFCFPDPH-FKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVK  176 (246)
T ss_dssp             -CTTCEEEEEEESCCCC-------CSSCCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             -cccccCEEEEECCCcc-cccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccH
Confidence             4678999976542221 000000     1479999999999999999876553

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.46  E-value=3.6e-13  Score=110.01  Aligned_cols=112  Identities=13%  Similarity=0.024  Sum_probs=79.2

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHH----hcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWE----NQRKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~----~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      ...++.+|||+|||+|..+..++... ..+++|+|+|+.|++.+.++..    ..+. .++.++++|+.+.++      .
T Consensus        24 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~------~   96 (218)
T 3mq2_A           24 RSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPP------L   96 (218)
T ss_dssp             HTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCS------C
T ss_pred             hccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCC------C
Confidence            35678999999999999999998874 4599999999999986443332    2222 268999999988665      3


Q ss_pred             CCceeEEEecccccccc-CCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          103 ANQADLVCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~-~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ++. |.|.+.+...... ....+...+++++.++|||||.++++..
T Consensus        97 ~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (218)
T 3mq2_A           97 SGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN  141 (218)
T ss_dssp             CCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence            455 7766433211100 0012237899999999999999998643

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.46  E-value=2.1e-13  Score=107.60  Aligned_cols=100  Identities=12%  Similarity=0.124  Sum_probs=76.5

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||+|||+|.++..++..+  +++|+|+|+.|++.      ..    ++.++++|+.+ ++      ++++||+|
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~------~~----~~~~~~~d~~~-~~------~~~~fD~i   82 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES------HR----GGNLVRADLLC-SI------NQESVDVV   82 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT------CS----SSCEEECSTTT-TB------CGGGCSEE
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc------cc----CCeEEECChhh-hc------ccCCCCEE
Confidence            567899999999999999887766  99999999999987      11    67899999866 33      34799999


Q ss_pred             EeccccccccC-----CHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCFE-----TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~~-----~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +++..++..-.     .......++.++.+.| |||.+++..+..
T Consensus        83 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~  126 (170)
T 3q87_B           83 VFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA  126 (170)
T ss_dssp             EECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG
T ss_pred             EECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC
Confidence            99877663111     0112345777788888 999999986543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.46  E-value=8.1e-13  Score=112.11  Aligned_cols=111  Identities=13%  Similarity=0.093  Sum_probs=86.7

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+.. ++.++++|+.+. +      +.++||+
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~-~------~~~~fD~  179 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSA-L------AGQQFAM  179 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGG-G------TTCCEEE
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhh-c------ccCCccE
Confidence            56789999999999999988865 4469999999999999999998776543 689999998542 2      3578999


Q ss_pred             EEecccccccc-----------CC----------HHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCF-----------ET----------EERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~-----------~~----------~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++....+..-           ++          ......++.++.++|+|||.+++..+.
T Consensus       180 Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~  240 (276)
T 2b3t_A          180 IVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW  240 (276)
T ss_dssp             EEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred             EEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            99974332210           11          145688999999999999999998543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.46  E-value=5.9e-13  Score=110.18  Aligned_cols=107  Identities=13%  Similarity=0.041  Sum_probs=78.3

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..|+.+|||+|||+|..+..++..  +.++|+|+|+|+.|++...+......   ++.++++|+........   ..++|
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~---nv~~i~~Da~~~~~~~~---~~~~~  147 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRP---NIFPLLADARFPQSYKS---VVENV  147 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCT---TEEEEECCTTCGGGTTT---TCCCE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcC---CeEEEEcccccchhhhc---cccce
Confidence            458999999999999999888775  35699999999999765544443322   78999999876432111   24689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      |+|++..+.      ......+..++.+.|||||.+++.+.
T Consensus       148 D~I~~d~a~------~~~~~il~~~~~~~LkpGG~lvisik  182 (232)
T 3id6_C          148 DVLYVDIAQ------PDQTDIAIYNAKFFLKVNGDMLLVIK  182 (232)
T ss_dssp             EEEEECCCC------TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEEecCCC------hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence            999987643      22344455667779999999999854

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.46  E-value=3.1e-13  Score=111.20  Aligned_cols=103  Identities=14%  Similarity=0.088  Sum_probs=82.0

Q ss_pred             CCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           32 YVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      +.+|||||||+|..+..++.. + .++++++|+|+.+++.|+++++..+.. .++.++++|+.+.  .+.+  .+++||+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~--l~~~--~~~~fD~  132 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV--MSRL--ANDSYQL  132 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH--GGGS--CTTCEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHH--HHHh--cCCCcCe
Confidence            349999999999999988875 2 469999999999999999999876654 4799999986431  1111  2579999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |++.....       ....+++.+.++|+|||++++.
T Consensus       133 V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          133 VFGQVSPM-------DLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             EEECCCTT-------THHHHHHHHHHHEEEEEEEEET
T ss_pred             EEEcCcHH-------HHHHHHHHHHHHcCCCcEEEEe
Confidence            98865433       3567899999999999999985

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.46  E-value=8.2e-13  Score=118.56  Aligned_cols=110  Identities=16%  Similarity=0.103  Sum_probs=83.1

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHH-------HHHHHhcCCC-ceeEEEEcCCCCCchhhhh
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEA-------RDTWENQRKN-FIAEFFEADPCAENFETQM   99 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a-------~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~   99 (258)
                      ..++.+|||||||+|..+..++.. +..+++|+|+++.+++.|       ++++...+.. .++.++++|....+..  +
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~--~  317 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR--V  317 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH--H
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccc--c
Confidence            457899999999999999998875 555899999999999988       7777665421 3789998865432110  1


Q ss_pred             hhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ....++||+|+++..++     .++...++.++.++|+|||.+++.
T Consensus       318 ~~~~~~FDvIvvn~~l~-----~~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          318 AELIPQCDVILVNNFLF-----DEDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             HHHGGGCSEEEECCTTC-----CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             ccccCCCCEEEEeCccc-----cccHHHHHHHHHHhCCCCeEEEEe
Confidence            01236899999875442     245778899999999999999886

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.45  E-value=3.8e-13  Score=116.55  Aligned_cols=103  Identities=12%  Similarity=0.010  Sum_probs=83.8

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCC--CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..++.+|||||||+|..+..++....  .+|+|+|+|+.+++.|+++....+.. ++.+.++|+.+...      ..++|
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~------~~~~f  145 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVP------EFSPY  145 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG------GGCCE
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhccc------cCCCe
Confidence            45789999999999999988877632  47999999999999999998776543 48999999855332      35789


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |+|++..+++++.          +++.++|+|||.+++....
T Consensus       146 D~Iv~~~~~~~~~----------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          146 DVIFVTVGVDEVP----------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             EEEEECSBBSCCC----------HHHHHHEEEEEEEEEEBCB
T ss_pred             EEEEEcCCHHHHH----------HHHHHhcCCCcEEEEEECC
Confidence            9999999888632          5678899999999998544

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.45  E-value=5.4e-13  Score=110.19  Aligned_cols=106  Identities=16%  Similarity=0.155  Sum_probs=84.8

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|||+|||+|..+..++... ..+++++|+++.+++.|++++...+...++.+.++|+.....  ... .+++||+|
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~-~~~~fD~I  130 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGE--KLE-LYPLFDVL  130 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHH--HHT-TSCCEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH--hcc-cCCCccEE
Confidence            67899999999999999888763 469999999999999999998876554468999999754211  110 15789999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ++....+       ....+++++.++|+|||.+++..
T Consensus       131 ~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          131 FIDAAKG-------QYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             EEEGGGS-------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred             EECCCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence            9876544       36789999999999999999873

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.45  E-value=2.7e-13  Score=115.06  Aligned_cols=106  Identities=14%  Similarity=0.067  Sum_probs=86.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhc-CCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      ..++.+|||+|||+|..+..++..  +..+++|+|+++.+++.|++++... +. .++.+.++|+.+ .+      ++++
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~-~~------~~~~  179 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIAD-FI------SDQM  179 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTT-CC------CSCC
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhc-cC------cCCC
Confidence            347889999999999999998876  3459999999999999999998765 42 268999999866 33      4578


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~  151 (258)
                      ||+|++..         ++...+++++.++|+|||.+++.+++...
T Consensus       180 fD~Vi~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  216 (275)
T 1yb2_A          180 YDAVIADI---------PDPWNHVQKIASMMKPGSVATFYLPNFDQ  216 (275)
T ss_dssp             EEEEEECC---------SCGGGSHHHHHHTEEEEEEEEEEESSHHH
T ss_pred             ccEEEEcC---------cCHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence            99998732         12357899999999999999999888643

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.44  E-value=1e-12  Score=109.85  Aligned_cols=109  Identities=13%  Similarity=0.074  Sum_probs=88.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhc-CCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      ..++.+|||+|||+|.++..++.. + ..+++++|+++.+++.|++++... + ..++.+.++|+.+.++      ++++
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~------~~~~  166 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAEL------EEAA  166 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCC------CTTC
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCC------CCCC
Confidence            458899999999999999998887 4 469999999999999999988765 3 2378999999866544      4578


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHH
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~  153 (258)
                      ||+|++...         +...++.++.++|+|||.+++..+....+.
T Consensus       167 ~D~v~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  205 (258)
T 2pwy_A          167 YDGVALDLM---------EPWKVLEKAALALKPDRFLVAYLPNITQVL  205 (258)
T ss_dssp             EEEEEEESS---------CGGGGHHHHHHHEEEEEEEEEEESCHHHHH
T ss_pred             cCEEEECCc---------CHHHHHHHHHHhCCCCCEEEEEeCCHHHHH
Confidence            999987321         234789999999999999999988875443

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.44  E-value=6.6e-13  Score=109.17  Aligned_cols=106  Identities=17%  Similarity=0.102  Sum_probs=82.1

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..++.+|||+|||+|.++..++.. + ..+++|+|+|+.|++.++++....   .++.++++|+.+......   ..++|
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~---~~~~~  144 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRA---LVPKV  144 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTT---TCCCE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhc---ccCCc
Confidence            347889999999999999998876 3 369999999999999998887654   278999999876321111   24589


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+|++...      .......++.++.++|+|||.+++..
T Consensus       145 D~v~~~~~------~~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          145 DVIFEDVA------QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEECCC------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCC------CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99997653      12334566999999999999999873

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.44  E-value=7.8e-13  Score=112.11  Aligned_cols=111  Identities=15%  Similarity=0.082  Sum_probs=89.0

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhc-C-CCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-R-KNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~-~-~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      ..++.+|||+|||+|.++..++..  +..+++++|+++.+++.|+++.... + ...++.+.++|+.+.++      +++
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~------~~~  170 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL------PDG  170 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC------CTT
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC------CCC
Confidence            458899999999999999998875  3469999999999999999988765 2 22378999999866544      467


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHH
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~  154 (258)
                      +||+|++...         +...++.++.++|+|||.+++..+....+.+
T Consensus       171 ~~D~v~~~~~---------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~  211 (280)
T 1i9g_A          171 SVDRAVLDML---------APWEVLDAVSRLLVAGGVLMVYVATVTQLSR  211 (280)
T ss_dssp             CEEEEEEESS---------CGGGGHHHHHHHEEEEEEEEEEESSHHHHHH
T ss_pred             ceeEEEECCc---------CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHH
Confidence            8999988431         1347899999999999999999988765443

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.44  E-value=1.1e-12  Score=114.35  Aligned_cols=115  Identities=17%  Similarity=0.053  Sum_probs=86.0

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc-CC-CeEEEEecChhHHHHHHHHHHhcC----------CCceeEEEEcCCCCCch
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQR----------KNFIAEFFEADPCAENF   95 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~----------~~~~~~~~~~d~~~~~~   95 (258)
                      ...++.+|||+|||+|.++..++.. +. .+++|+|+++.+++.|+++....+          ...++.+.++|+.+...
T Consensus       102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~  181 (336)
T 2b25_A          102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  181 (336)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence            3568899999999999999998876 44 699999999999999999887421          11278999999876421


Q ss_pred             hhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHH
Q 025059           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (258)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~  155 (258)
                        .+  ++++||+|++.....         ..++.++.++|+|||.+++..++...+...
T Consensus       182 --~~--~~~~fD~V~~~~~~~---------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~  228 (336)
T 2b25_A          182 --DI--KSLTFDAVALDMLNP---------HVTLPVFYPHLKHGGVCAVYVVNITQVIEL  228 (336)
T ss_dssp             ----------EEEEEECSSST---------TTTHHHHGGGEEEEEEEEEEESSHHHHHHH
T ss_pred             --cc--CCCCeeEEEECCCCH---------HHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Confidence              01  356899998854322         237899999999999999998887655443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.43  E-value=6.5e-13  Score=109.98  Aligned_cols=104  Identities=13%  Similarity=0.102  Sum_probs=82.9

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|..+..++.....+++++|+++.+++.|+++....+.. ++.+.++|+ ..++.     ...+||+
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~-~~~~~-----~~~~fD~  161 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDG-SKGFP-----PKAPYDV  161 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCG-GGCCG-----GGCCEEE
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCc-ccCCC-----CCCCccE
Confidence            4578899999999999999888764268999999999999999998766543 588999996 22221     2346999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |++..++++..          .++.++|+|||.+++.+++.
T Consensus       162 Ii~~~~~~~~~----------~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          162 IIVTAGAPKIP----------EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             EEECSBBSSCC----------HHHHHTEEEEEEEEEEECSS
T ss_pred             EEECCcHHHHH----------HHHHHhcCCCcEEEEEEecC
Confidence            99998887632          36789999999999998765

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.43  E-value=2.6e-12  Score=106.73  Aligned_cols=108  Identities=11%  Similarity=0.057  Sum_probs=87.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||+|||+|..+..++.. ..+++++|+++.+++.|+++....+...++.+.++|+.+..+      +++.||+|
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~D~v  162 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV------PEGIFHAA  162 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC------CTTCBSEE
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc------CCCcccEE
Confidence            47899999999999999998887 559999999999999999998776543478999999866332      24689999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHH
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~  153 (258)
                      ++...         +...+++++.++|+|||.+++..+....+.
T Consensus       163 ~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  197 (248)
T 2yvl_A          163 FVDVR---------EPWHYLEKVHKSLMEGAPVGFLLPTANQVI  197 (248)
T ss_dssp             EECSS---------CGGGGHHHHHHHBCTTCEEEEEESSHHHHH
T ss_pred             EECCc---------CHHHHHHHHHHHcCCCCEEEEEeCCHHHHH
Confidence            87431         235678999999999999999998765443

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.43  E-value=5.8e-13  Score=107.26  Aligned_cols=109  Identities=11%  Similarity=0.086  Sum_probs=77.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-C--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc-----------
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-----------   94 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------   94 (258)
                      ++++.+|||+|||+|..+..++.. +  ..+++|+|+|+.+         ..   .++.++++|+.+.+           
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~~---~~v~~~~~d~~~~~~~~~~~~~~i~   87 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------PI---PNVYFIQGEIGKDNMNNIKNINYID   87 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------CC---TTCEEEECCTTTTSSCCC-------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------CC---CCceEEEccccchhhhhhccccccc
Confidence            467899999999999999999876 3  3689999999842         01   16789999987654           


Q ss_pred             ------hhhhhh--hcCCceeEEEeccccccccCCHHH-------HHHHHHHHHhcccCCcEEEEEEcCc
Q 025059           95 ------FETQMQ--EKANQADLVCCFQHLQMCFETEER-------ARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus        95 ------~~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~-------~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                            ....+.  -++++||+|++..++++.-....+       ...++.++.++|+|||.+++.+...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  157 (201)
T 2plw_A           88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG  157 (201)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence                  000000  145799999998876642111111       2358899999999999999976654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.43  E-value=5.2e-13  Score=117.86  Aligned_cols=107  Identities=14%  Similarity=0.198  Sum_probs=81.3

Q ss_pred             HHHHhcCCCCEEEEEcCC------CCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059           24 LIKIYSHPYVTVCDLYCG------AGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG------~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (258)
                      ++..+..++.+|||||||      +|+.+..+...  +..+++|+|+|+.|.      . .   ..++.|+++|+.+.++
T Consensus       209 lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~-~---~~rI~fv~GDa~dlpf  278 (419)
T 3sso_A          209 HFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V-D---ELRIRTIQGDQNDAEF  278 (419)
T ss_dssp             HHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G-C---BTTEEEEECCTTCHHH
T ss_pred             HHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h-c---CCCcEEEEecccccch
Confidence            344455577899999999      77767666654  456999999999983      1 1   1279999999988766


Q ss_pred             hhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ...+...+++||+|++.. .|+    ..+...+++++.++|||||++++.
T Consensus       279 ~~~l~~~d~sFDlVisdg-sH~----~~d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          279 LDRIARRYGPFDIVIDDG-SHI----NAHVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             HHHHHHHHCCEEEEEECS-CCC----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhhhhcccCCccEEEECC-ccc----chhHHHHHHHHHHhcCCCeEEEEE
Confidence            433322358999999875 354    567889999999999999999997

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.42  E-value=9e-13  Score=112.52  Aligned_cols=111  Identities=15%  Similarity=0.059  Sum_probs=84.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce---e
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA---D  107 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f---D  107 (258)
                      ++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....+...++.++++|+.+ .+       .++|   |
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~-------~~~f~~~D  194 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PF-------KEKFASIE  194 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GG-------GGGTTTCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh-hc-------ccccCCCC
Confidence            56799999999999999988774459999999999999999999877654469999999865 22       1468   9


Q ss_pred             EEEecccccc--------c-cCCHHH------HHHHHHHHH-hcccCCcEEEEEEcCc
Q 025059          108 LVCCFQHLQM--------C-FETEER------ARRLLQNVS-SLLKPGGYFLGITPDS  149 (258)
Q Consensus       108 ~V~~~~~l~~--------~-~~~~~~------~~~~l~~i~-~~LkpgG~~i~~~~~~  149 (258)
                      +|+++-....        + ++....      ...+++++. +.|+|||.+++.+...
T Consensus       195 ~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~  252 (284)
T 1nv8_A          195 MILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED  252 (284)
T ss_dssp             EEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred             EEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence            9999621110        0 121111      127899999 9999999999986554

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.42  E-value=7.9e-13  Score=103.49  Aligned_cols=110  Identities=18%  Similarity=0.085  Sum_probs=81.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh--hcCC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~  104 (258)
                      ..++.+|||+|||+|..+..++.. +. .+++|+|+++ +++.           .++.+.++|+.+.+..+.++  -+++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCC
Confidence            457889999999999999988877 33 6999999999 7542           16889999987754111111  1467


Q ss_pred             ceeEEEeccccccccCCH-HH------HHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          105 QADLVCCFQHLQMCFETE-ER------ARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~-~~------~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      +||+|++...+++.-... ..      ...+++++.++|+|||.+++..+...
T Consensus        88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  140 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            999999987776422211 11      16899999999999999999877654

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.42  E-value=9.6e-13  Score=106.98  Aligned_cols=102  Identities=14%  Similarity=0.085  Sum_probs=80.7

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ++.+|||+|||+|..+..++.. + ..+++++|+|+.+++.|++++...+...++.++++|+.+.     ++..++ ||+
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~-fD~  129 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI-----AAGQRD-IDI  129 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH-----HTTCCS-EEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH-----hccCCC-CCE
Confidence            5689999999999999988776 2 4699999999999999999987665444689999996331     111245 999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |++....       .....+++++.++|+|||++++.
T Consensus       130 v~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          130 LFMDCDV-------FNGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             EEEETTT-------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEcCCh-------hhhHHHHHHHHHhcCCCeEEEEE
Confidence            9876432       23678899999999999999885

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.42  E-value=4e-13  Score=112.09  Aligned_cols=106  Identities=12%  Similarity=0.048  Sum_probs=83.6

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCCce
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~f  106 (258)
                      ++.+|||||||+|..+..++..  ..++|+++|+++.+++.|+++++..+...++.++++|+.+.  .+.+..  ..++|
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~--l~~~~~~~~~~~f  137 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDT--LHSLLNEGGEHQF  137 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHH--HHHHHHHHCSSCE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--HHHHhhccCCCCE
Confidence            5689999999999999998875  24699999999999999999998776555799999997431  111110  14799


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|++...       ......+++++.++|+|||++++.
T Consensus       138 D~V~~d~~-------~~~~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          138 DFIFIDAD-------KTNYLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             EEEEEESC-------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEcCC-------hHHhHHHHHHHHHhcCCCeEEEEE
Confidence            99987653       233667899999999999999986

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.42  E-value=6.8e-12  Score=110.26  Aligned_cols=103  Identities=23%  Similarity=0.285  Sum_probs=85.3

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      +..+|||||||+|..+..+++..+ .+++..|. +.+++.|+++..... ..+++++.+|+...+.        ..+|+|
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~--------~~~D~~  248 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL--------PEADLY  248 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCC--------CCCSEE
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCC--------CCceEE
Confidence            567999999999999999988743 47888887 889999988875433 3389999999876443        457999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ++..++|+  .+.++...+|+++++.|+|||.+++.
T Consensus       249 ~~~~vlh~--~~d~~~~~iL~~~~~al~pgg~lli~  282 (353)
T 4a6d_A          249 ILARVLHD--WADGKCSHLLERIYHTCKPGGGILVI  282 (353)
T ss_dssp             EEESSGGG--SCHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             Eeeeeccc--CCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            99999997  56778899999999999999999887

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.41  E-value=1.2e-12  Score=116.90  Aligned_cols=124  Identities=17%  Similarity=0.101  Sum_probs=93.6

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (258)
                      ++....+++.+|||+|||+|.++..++..+..+++|+|+|+.+++.|++++..++...++.++++|+.+.  ...+....
T Consensus       210 ~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~--~~~~~~~~  287 (396)
T 2as0_A          210 ALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE--MEKLQKKG  287 (396)
T ss_dssp             HHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH--HHHHHHTT
T ss_pred             HHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHH--HHHHHhhC
Confidence            3444555789999999999999999988766699999999999999999998776544789999997442  11121135


Q ss_pred             CceeEEEeccccc-----cccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          104 NQADLVCCFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       104 ~~fD~V~~~~~l~-----~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ++||+|++.....     ..+........++.++.++|+|||.+++.+.+.
T Consensus       288 ~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          288 EKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             CCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            7899999853211     111123567889999999999999999887765

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.41  E-value=1.4e-13  Score=117.42  Aligned_cols=99  Identities=10%  Similarity=0.006  Sum_probs=73.5

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeE-EEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAE-FFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|||+|||||.++..++..+..+|+|+|+|+.|++.+.++.+      ++. +...|+...... .+  +..+||+|
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~------rv~~~~~~ni~~l~~~-~l--~~~~fD~v  155 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDD------RVRSMEQYNFRYAEPV-DF--TEGLPSFA  155 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCT------TEEEECSCCGGGCCGG-GC--TTCCCSEE
T ss_pred             cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------ccceecccCceecchh-hC--CCCCCCEE
Confidence            578999999999999999988877799999999999998543211      222 222343222211 11  33459999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ++..+++.       +..++.++.++|+|||.+++.
T Consensus       156 ~~d~sf~s-------l~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          156 SIDVSFIS-------LNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             EECCSSSC-------GGGTHHHHHHHSCTTCEEEEE
T ss_pred             EEEeeHhh-------HHHHHHHHHHHcCcCCEEEEE
Confidence            99887665       478999999999999999887

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.41  E-value=8.1e-13  Score=108.77  Aligned_cols=104  Identities=11%  Similarity=0.081  Sum_probs=81.6

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-C------CCeEEEEecChhHHHHHHHHHHhcCC----CceeEEEEcCCCCCchhh
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-L------IANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFET   97 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~------~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~   97 (258)
                      ..++.+|||+|||+|..+..++.. +      ..+++++|+++.+++.|+++....+.    ..++.+.++|+.. .+. 
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~-  159 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYP-  159 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCG-
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCC-
Confidence            567899999999999999888774 3      25899999999999999998765320    1168999999754 221 


Q ss_pred             hhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                          ..++||+|++..+++.+          ..++.++|+|||.+++.+..
T Consensus       160 ----~~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          160 ----PNAPYNAIHVGAAAPDT----------PTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             ----GGCSEEEEEECSCBSSC----------CHHHHHTEEEEEEEEEEESC
T ss_pred             ----cCCCccEEEECCchHHH----------HHHHHHHhcCCCEEEEEEec
Confidence                23789999999887763          26789999999999998654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.41  E-value=1.7e-12  Score=110.55  Aligned_cols=112  Identities=15%  Similarity=0.027  Sum_probs=82.0

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEec-ChhHHHHHHHHH-----HhcCCC----ceeEEEEcCCCCCchhhhh
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDV-ATSGIGEARDTW-----ENQRKN----FIAEFFEADPCAENFETQM   99 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~-s~~~l~~a~~~~-----~~~~~~----~~~~~~~~d~~~~~~~~~~   99 (258)
                      .++.+|||||||+|..+..++..+..+|+|+|+ |+.+++.|+++.     ...+..    .++.+...|..+..- ...
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~  156 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPD-SLQ  156 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTH-HHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccH-HHH
Confidence            467899999999999998888777669999999 899999999988     333221    257777666544211 111


Q ss_pred             hh-cCCceeEEEeccccccccCCHHHHHHHHHHHHhccc---C--CcEEEEEE
Q 025059          100 QE-KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLK---P--GGYFLGIT  146 (258)
Q Consensus       100 ~~-~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk---p--gG~~i~~~  146 (258)
                      .. ..++||+|++..++++    .+....+++.+.++|+   |  ||.+++..
T Consensus       157 ~~~~~~~fD~Ii~~dvl~~----~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~  205 (281)
T 3bzb_A          157 RCTGLQRFQVVLLADLLSF----HQAHDALLRSVKMLLALPANDPTAVALVTF  205 (281)
T ss_dssp             HHHSCSSBSEEEEESCCSC----GGGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred             hhccCCCCCEEEEeCcccC----hHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence            00 2578999999877665    5567889999999999   9  99877663

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.40  E-value=2.3e-12  Score=106.94  Aligned_cols=108  Identities=15%  Similarity=0.123  Sum_probs=84.0

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh------
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE------  101 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------  101 (258)
                      .++.+|||||||+|..+..++...  ..+++++|+++.+++.|++++...+...++.+.++|+.+.  .+.+..      
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~--~~~~~~~~~~~~  136 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALET--LQVLIDSKSAPS  136 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH--HHHHHHCSSCCG
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHH--HHHHHhhccccc
Confidence            367899999999999999988773  4699999999999999999987765444689999986431  111110      


Q ss_pred             -----c-C-CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          102 -----K-A-NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       102 -----~-~-~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                           + + ++||+|++.....       ....+++++.++|+|||++++..
T Consensus       137 ~~~~f~~~~~~fD~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          137 WASDFAFGPSSIDLFFLDADKE-------NYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             GGTTTCCSTTCEEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccccccCCCCCcCEEEEeCCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence                 1 2 7899999876433       35688999999999999999874

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.40  E-value=2.7e-12  Score=114.27  Aligned_cols=119  Identities=11%  Similarity=0.024  Sum_probs=88.1

Q ss_pred             HHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      .++..+++++.+|||+|||+|.++..++..+. .|+++|+|+.+++.|++++..++..  ..+.++|+.+.     +...
T Consensus       206 ~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~--~~~~~~D~~~~-----l~~~  277 (393)
T 4dmg_A          206 RLFEAMVRPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLR--VDIRHGEALPT-----LRGL  277 (393)
T ss_dssp             HHHHTTCCTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCHHHH-----HHTC
T ss_pred             HHHHHHhcCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCC--CcEEEccHHHH-----HHHh
Confidence            44556667799999999999999999988776 5999999999999999999877543  35668886431     1111


Q ss_pred             CCceeEEEeccccc-----cccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          103 ANQADLVCCFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       103 ~~~fD~V~~~~~l~-----~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .+.||+|++.....     ...........++..+.++|+|||.+++.+.+.
T Consensus       278 ~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~  329 (393)
T 4dmg_A          278 EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY  329 (393)
T ss_dssp             CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            34499999854320     011123456789999999999999999776654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.40  E-value=2.4e-12  Score=107.65  Aligned_cols=106  Identities=10%  Similarity=0.041  Sum_probs=83.2

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh---cCCc
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---KANQ  105 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~  105 (258)
                      ++.+|||||||+|..+..++.. + ..+++++|+++.+++.|+++++..+...++.++++|+.+  ..+.+..   ..++
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~--~l~~l~~~~~~~~~  156 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP--VLDEMIKDEKNHGS  156 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH--HHHHHHHSGGGTTC
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHH--HHHHHHhccCCCCC
Confidence            5689999999999999988876 2 469999999999999999999876654579999999743  1111110   1578


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ||+|++....       .....+++++.++|+|||++++.
T Consensus       157 fD~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          157 YDFIFVDADK-------DNYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             BSEEEECSCS-------TTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEEEEEcCch-------HHHHHHHHHHHHhCCCCeEEEEe
Confidence            9999886532       23678899999999999999986

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.39  E-value=1e-12  Score=113.28  Aligned_cols=113  Identities=13%  Similarity=0.058  Sum_probs=82.4

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHh---cCCCceeEEEEcCCCCCchhhhhhh-cCC
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN---QRKNFIAEFFEADPCAENFETQMQE-KAN  104 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~-~~~  104 (258)
                      +++.+|||||||+|..+..+++. +..+++++|+|+.+++.|+++++.   .....++.++++|+....     .. .++
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~~~~~  168 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFV-----RQTPDN  168 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH-----HSSCTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHH-----HhccCC
Confidence            46789999999999999999876 356999999999999999998742   111226899999974321     11 257


Q ss_pred             ceeEEEeccccccccCCHHHH--HHHHHHHHhcccCCcEEEEEEcCc
Q 025059          105 QADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~--~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +||+|++....+.  .....+  ..+++++.++|+|||++++...+.
T Consensus       169 ~fDvIi~d~~~~~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  213 (304)
T 3bwc_A          169 TYDVVIIDTTDPA--GPASKLFGEAFYKDVLRILKPDGICCNQGESI  213 (304)
T ss_dssp             CEEEEEEECC-----------CCHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             ceeEEEECCCCcc--ccchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence            8999998654432  112222  689999999999999999986553

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.39  E-value=8e-13  Score=123.23  Aligned_cols=129  Identities=16%  Similarity=0.126  Sum_probs=89.5

Q ss_pred             CcchHHhHHHHHHHHH--HHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEE
Q 025059            9 SELTHHRLYEFAKTAL--IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFF   86 (258)
Q Consensus         9 ~~~~~~~~~~~~k~~l--i~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~   86 (258)
                      ++....|+ ++++..+  +...+..+.+|||||||+|.++..+++.+. .|+|+|+|+.+|+.|+.+....+. .++.|.
T Consensus        43 ~r~~~~r~-~~i~~~~~~~~~~~~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~  119 (569)
T 4azs_A           43 ARDCNQRL-DLITEQYDNLSRALGRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPD-FAAEFR  119 (569)
T ss_dssp             SBCCHHHH-HHHHHHHHHHHHHHTSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTT-SEEEEE
T ss_pred             ccchHHHH-HHHHHHHHHHHhhcCCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCC-CceEEE
Confidence            44455553 3333321  233344678999999999999999999887 899999999999999999876542 278999


Q ss_pred             EcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059           87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus        87 ~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ++++.+..  ...  .+++||+|+|..+++++..  ......+..+.+.|+++|..++..
T Consensus       120 ~~~~~~~~--~~~--~~~~fD~v~~~e~~ehv~~--~~~~~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          120 VGRIEEVI--AAL--EEGEFDLAIGLSVFHHIVH--LHGIDEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             ECCHHHHH--HHC--CTTSCSEEEEESCHHHHHH--HHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred             ECCHHHHh--hhc--cCCCccEEEECcchhcCCC--HHHHHHHHHHHHHhccccceeeEE
Confidence            99974421  111  4679999999999987321  222233445667777777665553

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.38  E-value=3.5e-12  Score=108.19  Aligned_cols=108  Identities=13%  Similarity=0.054  Sum_probs=87.2

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..++.+|||+|||+|..+..++.. + ..+++++|+|+.+++.|+++....+...++.+.++|+.+. +      ++++|
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~------~~~~~  182 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-F------DEKDV  182 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-C------SCCSE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-c------cCCcc
Confidence            457899999999999999988877 4 4699999999999999999987765434789999997543 2      45789


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~  152 (258)
                      |+|++...         ....++.++.++|+|||.+++..+....+
T Consensus       183 D~V~~~~~---------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (277)
T 1o54_A          183 DALFLDVP---------DPWNYIDKCWEALKGGGRFATVCPTTNQV  219 (277)
T ss_dssp             EEEEECCS---------CGGGTHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred             CEEEECCc---------CHHHHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence            99987431         23478899999999999999998875433

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.38  E-value=3.5e-12  Score=107.57  Aligned_cols=112  Identities=11%  Similarity=0.097  Sum_probs=82.5

Q ss_pred             CEEEEEcCCC--CccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCCce
Q 025059           33 VTVCDLYCGA--GVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (258)
Q Consensus        33 ~~VLDlGcG~--G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~f  106 (258)
                      ..|||||||+  ++++..++..  +..+|+++|.|+.|++.|++++.... ..++.|+++|+.+...  .+..  ....|
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~--~l~~~~~~~~~  156 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPAS--ILDAPELRDTL  156 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHH--HHTCHHHHTTC
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhh--hhccccccccc
Confidence            6899999997  5666666553  45699999999999999999987542 1278999999976421  1110  02345


Q ss_pred             e-----EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          107 D-----LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       107 D-----~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |     .|+++.++|++ ...+....++..+.+.|+|||+|+++...
T Consensus       157 D~~~p~av~~~avLH~l-~d~~~p~~~l~~l~~~L~PGG~Lvls~~~  202 (277)
T 3giw_A          157 DLTRPVALTVIAIVHFV-LDEDDAVGIVRRLLEPLPSGSYLAMSIGT  202 (277)
T ss_dssp             CTTSCCEEEEESCGGGS-CGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred             CcCCcchHHhhhhHhcC-CchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence            5     57788899983 22333678999999999999999998443

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.38  E-value=2.9e-12  Score=102.99  Aligned_cols=110  Identities=14%  Similarity=0.094  Sum_probs=78.6

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--c---C
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--K---A  103 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~---~  103 (258)
                      .+++.+|||||||+|.++..++.. ..+|+|+|+++...            ..++.++++|+.+......+..  .   .
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~~------------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~   89 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEMEE------------IAGVRFIRCDIFKETIFDDIDRALREEGI   89 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCCC------------CTTCEEEECCTTSSSHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEecccccc------------CCCeEEEEccccCHHHHHHHHHHhhcccC
Confidence            468899999999999999999877 55999999998521            1168999999987653322111  1   1


Q ss_pred             CceeEEEeccccccc-------cCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059          104 NQADLVCCFQHLQMC-------FETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~-------~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~  151 (258)
                      ++||+|++.......       .........++..+.++|+|||.|++.+.....
T Consensus        90 ~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~  144 (191)
T 3dou_A           90 EKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM  144 (191)
T ss_dssp             SSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred             CcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence            499999996543211       011123467899999999999999988665543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.38  E-value=3.4e-12  Score=113.02  Aligned_cols=125  Identities=14%  Similarity=0.077  Sum_probs=92.9

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      ++....+++.+|||+|||+|.++..++..+. .+++|+|+|+.|++.|+++....+...++.+.++|+.+.+.      +
T Consensus       210 l~~~~~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~------~  283 (373)
T 3tm4_A          210 MIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ------Y  283 (373)
T ss_dssp             HHHHHTCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG------T
T ss_pred             HHHhhcCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc------c
Confidence            3333366789999999999999999988754 48999999999999999999877654578999999876554      4


Q ss_pred             CCceeEEEecccccccc---CCHHH-HHHHHHHHHhcccCCcEEEEEEcCchHHHHHH
Q 025059          103 ANQADLVCCFQHLQMCF---ETEER-ARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~---~~~~~-~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~  156 (258)
                      +++||+|+++...+.-.   ..... ...+++.+.++|  ||.+++.+++...+.+.+
T Consensus       284 ~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~~~~~~  339 (373)
T 3tm4_A          284 VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKAIEEAI  339 (373)
T ss_dssp             CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHHHHHHH
T ss_pred             cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHH
Confidence            68999999965433211   11222 378889999988  666666677766555444

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.38  E-value=1.9e-12  Score=109.80  Aligned_cols=106  Identities=15%  Similarity=0.034  Sum_probs=86.2

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ...++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|+++.+.++.. ++.++++|+.+.+       ..++|
T Consensus       116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~-------~~~~~  187 (272)
T 3a27_A          116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVE-------LKDVA  187 (272)
T ss_dssp             SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCC-------CTTCE
T ss_pred             hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcC-------ccCCc
Confidence            3567899999999999999999887 3559999999999999999998876543 6789999986531       24689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |+|++....        ....++..+.+.|+|||+++++....
T Consensus       188 D~Vi~d~p~--------~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          188 DRVIMGYVH--------KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             EEEEECCCS--------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             eEEEECCcc--------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            999887643        34568889999999999999885443

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.38  E-value=1.6e-12  Score=112.60  Aligned_cols=113  Identities=18%  Similarity=0.094  Sum_probs=84.9

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..++.+|||+|||+|..+..++..  +.++++|+|+|+.+++.++++....+.. ++.++++|+...+.      ..++|
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~------~~~~f  188 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGE------LNVEF  188 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGG------GCCCE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhccc------ccccC
Confidence            347889999999999999998875  3368999999999999999998876543 68999999755332      35689


Q ss_pred             eEEEeccc------ccccc-----CCH-------HHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          107 DLVCCFQH------LQMCF-----ETE-------ERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       107 D~V~~~~~------l~~~~-----~~~-------~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |+|++...      ++..-     .+.       .....++.++.++|||||.+++++..
T Consensus       189 D~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          189 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            99998422      11100     011       11268999999999999999997654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.37  E-value=2.6e-12  Score=106.26  Aligned_cols=106  Identities=15%  Similarity=0.072  Sum_probs=82.6

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC--Cce
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA--NQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~f  106 (258)
                      ++.+|||+|||+|..+..++...  ..+++++|+++.+++.|++++...+...++.+.++|+.+  ..+.++..+  ++|
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~--~l~~l~~~~~~~~f  149 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA--TLEQLTQGKPLPEF  149 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH--HHHHHHTSSSCCCE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--HHHHHHhcCCCCCc
Confidence            56799999999999998887762  359999999999999999998766554478999998632  111121122  789


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|++....       .....+++++.++|+|||++++.
T Consensus       150 D~V~~d~~~-------~~~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          150 DLIFIDADK-------RNYPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             EEEEECSCG-------GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CEEEECCCH-------HHHHHHHHHHHHHcCCCeEEEEe
Confidence            999876532       34678899999999999999987

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.37  E-value=4.9e-12  Score=112.85  Aligned_cols=118  Identities=14%  Similarity=0.079  Sum_probs=90.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCC-CceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-NFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|.++..++..+..+++|+|+|+.+++.|++++..++. ..++.++++|+.+.  ...+.....+||+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~--~~~~~~~~~~fD~  296 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL--LRTYRDRGEKFDV  296 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHH--HHHHHHTTCCEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH--HHHHHhcCCCCCE
Confidence            56889999999999999999887767999999999999999999987755 33789999997442  1112112568999


Q ss_pred             EEeccccc-----cccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          109 VCCFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~~l~-----~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |++.-...     ...........++.++.++|+|||++++++...
T Consensus       297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            99863211     112223567889999999999999999986654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.37  E-value=7.8e-12  Score=100.71  Aligned_cols=102  Identities=12%  Similarity=0.010  Sum_probs=76.0

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|.++..++..+..+++|+|+|+.+++.|+++..      ++.++++|+.+  +       +++||+
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~--~-------~~~~D~  113 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSE--I-------SGKYDT  113 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGG--C-------CCCEEE
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHH--C-------CCCeeE
Confidence            34678999999999999999888766689999999999999998875      57899999754  2       268999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |++...+|+.  .......+++++.+++  |+++++..+..
T Consensus       114 v~~~~p~~~~--~~~~~~~~l~~~~~~~--g~~~~~~~~~~  150 (200)
T 1ne2_A          114 WIMNPPFGSV--VKHSDRAFIDKAFETS--MWIYSIGNAKA  150 (200)
T ss_dssp             EEECCCC---------CHHHHHHHHHHE--EEEEEEEEGGG
T ss_pred             EEECCCchhc--cCchhHHHHHHHHHhc--CcEEEEEcCch
Confidence            9998877762  1223357888888888  55555444433

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.37  E-value=6.3e-12  Score=104.36  Aligned_cols=107  Identities=10%  Similarity=0.002  Sum_probs=83.9

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh---cCCc
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---KANQ  105 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~  105 (258)
                      ++.+|||||||+|..+..++.. + ..+++++|+++.+++.|+++++..+...++.++++|+.+  ..+.+..   ..++
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~--~l~~l~~~~~~~~~  147 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML--ALDNLLQGQESEGS  147 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH--HHHHHHHSTTCTTC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--HHHHHHhccCCCCC
Confidence            5689999999999999998876 2 469999999999999999999876654479999999743  1111111   1478


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ||+|++...       ......+++.+.++|+|||++++..
T Consensus       148 fD~I~~d~~-------~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          148 YDFGFVDAD-------KPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             EEEEEECSC-------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCEEEECCc-------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence            999987643       2346789999999999999999873

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.36  E-value=9e-13  Score=111.89  Aligned_cols=116  Identities=11%  Similarity=0.026  Sum_probs=84.9

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++.+|||+|||+|+.+..++..  +..+++|+|+++.+++.++++....+.. ++.++++|+.....  .+....++||
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~--~~~~~~~~fD  158 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKD--YLLKNEIFFD  158 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHH--HHHHTTCCEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcch--hhhhccccCC
Confidence            47889999999999999888874  3369999999999999999998876543 78999999743221  1111257899


Q ss_pred             EEEecccccc--ccC-----CH-------HHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          108 LVCCFQHLQM--CFE-----TE-------ERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       108 ~V~~~~~l~~--~~~-----~~-------~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +|++......  .+.     +.       .....++.++.++|||||.+++++++
T Consensus       159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs  213 (274)
T 3ajd_A          159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS  213 (274)
T ss_dssp             EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            9988632211  000     00       22478899999999999999998654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.35  E-value=3.6e-12  Score=104.76  Aligned_cols=107  Identities=13%  Similarity=0.106  Sum_probs=83.0

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC--Cc
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA--NQ  105 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~  105 (258)
                      .++.+|||+|||+|..+..++.. + ..+++++|+++.+++.|++++...+...++.++++|+.+.  .+.+....  ++
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~--~~~~~~~~~~~~  145 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET--LDELLAAGEAGT  145 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH--HHHHHHTTCTTC
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH--HHHHHhcCCCCC
Confidence            36789999999999999988875 2 4699999999999999999988765544789999987431  11121111  68


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ||+|++....       .....+++++.++|+|||++++.
T Consensus       146 ~D~v~~d~~~-------~~~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          146 FDVAVVDADK-------ENCSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             EEEEEECSCS-------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEECCCH-------HHHHHHHHHHHHHcCCCeEEEEE
Confidence            9999886532       23567899999999999999986

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.35  E-value=7.6e-12  Score=106.56  Aligned_cols=110  Identities=13%  Similarity=0.064  Sum_probs=82.1

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc--C--------CCceeEEEEcCCCCCchhhh
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--R--------KNFIAEFFEADPCAENFETQ   98 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~--------~~~~~~~~~~d~~~~~~~~~   98 (258)
                      .+++.+|||||||+|..+..+++.+..+++++|+++.+++.|++++ ..  +        ...+++++++|+.+     .
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~-----~  146 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFE-----F  146 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHH-----H
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHH-----H
Confidence            3467899999999999999998875569999999999999999987 32  1        12378999998632     1


Q ss_pred             hhhcCCceeEEEeccccccccCCHHH--HHHHHHHHHhcccCCcEEEEEEc
Q 025059           99 MQEKANQADLVCCFQHLQMCFETEER--ARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~--~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      +.. .++||+|++....+.  .....  ...+++++.++|+|||++++...
T Consensus       147 l~~-~~~fD~Ii~d~~~~~--~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  194 (281)
T 1mjf_A          147 IKN-NRGFDVIIADSTDPV--GPAKVLFSEEFYRYVYDALNNPGIYVTQAG  194 (281)
T ss_dssp             HHH-CCCEEEEEEECCCCC-------TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hcc-cCCeeEEEECCCCCC--CcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            222 578999998654332  11222  27889999999999999998753

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.35  E-value=1.6e-12  Score=107.93  Aligned_cols=101  Identities=15%  Similarity=0.111  Sum_probs=76.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-----CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      ++.+|||||||+|..+..++..     +..+|+|+|+|+.+++.|+.    .  ..++.++++|+.+....+..  ...+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~--~~~v~~~~gD~~~~~~l~~~--~~~~  152 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----D--MENITLHQGDCSDLTTFEHL--REMA  152 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----G--CTTEEEEECCSSCSGGGGGG--SSSC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----c--CCceEEEECcchhHHHHHhh--ccCC
Confidence            4579999999999999988775     34699999999999988861    1  12799999998764111111  2347


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHh-cccCCcEEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSS-LLKPGGYFLGIT  146 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~-~LkpgG~~i~~~  146 (258)
                      ||+|++..+ |.      ....++.++.+ +|+|||++++..
T Consensus       153 fD~I~~d~~-~~------~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          153 HPLIFIDNA-HA------NTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             SSEEEEESS-CS------SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             CCEEEECCc-hH------hHHHHHHHHHHhhCCCCCEEEEEe
Confidence            999987654 31      35678999997 999999999864

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.34  E-value=1.8e-12  Score=109.93  Aligned_cols=106  Identities=14%  Similarity=0.029  Sum_probs=87.1

Q ss_pred             HHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      +.....+|.+|||+|||+|.++..++..+..+|+++|+++.+++.++++.+.++...++.++++|+.+..       +.+
T Consensus       119 i~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-------~~~  191 (278)
T 3k6r_A          119 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-------GEN  191 (278)
T ss_dssp             HHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-------CCS
T ss_pred             HHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-------ccc
Confidence            3456678999999999999999999888877999999999999999999998877668999999986643       367


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .||.|++... +.       ...++..+.++|++||++.+.
T Consensus       192 ~~D~Vi~~~p-~~-------~~~~l~~a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          192 IADRILMGYV-VR-------THEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             CEEEEEECCC-SS-------GGGGHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEECCC-Cc-------HHHHHHHHHHHcCCCCEEEEE
Confidence            8999987642 21       235677778899999998654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.34  E-value=8.8e-13  Score=107.39  Aligned_cols=89  Identities=19%  Similarity=0.206  Sum_probs=72.8

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||+|||+|..+..+   . .+++|+|+|+.                ++.+.++|+.+.++      ++++||+|
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l---~-~~v~~~D~s~~----------------~~~~~~~d~~~~~~------~~~~fD~v  119 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSI---R-NPVHCFDLASL----------------DPRVTVCDMAQVPL------EDESVDVA  119 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHC---C-SCEEEEESSCS----------------STTEEESCTTSCSC------CTTCEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHh---h-ccEEEEeCCCC----------------CceEEEeccccCCC------CCCCEeEE
Confidence            46789999999999887766   2 48999999987                24578899877655      56899999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ++..++|+     .+...+++++.++|+|||.++++.+..
T Consensus       120 ~~~~~l~~-----~~~~~~l~~~~~~L~~gG~l~i~~~~~  154 (215)
T 2zfu_A          120 VFCLSLMG-----TNIRDFLEEANRVLKPGGLLKVAEVSS  154 (215)
T ss_dssp             EEESCCCS-----SCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             EEehhccc-----cCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            99998873     346789999999999999999985543

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.34  E-value=5.4e-12  Score=111.34  Aligned_cols=97  Identities=18%  Similarity=0.125  Sum_probs=81.2

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .+..+|||||||+|..+..+++. +..+++++|+ +.+++.|+++       .++.++.+|+.+ ++      +.+  |+
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~------p~~--D~  262 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-EV------PSG--DT  262 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CC------CCC--SE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-CC------CCC--CE
Confidence            46789999999999999999876 3458999999 8888776542       279999999876 44      333  99


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |++..++|+  .+.++...++++++++|+|||.+++.
T Consensus       263 v~~~~vlh~--~~d~~~~~~L~~~~~~L~pgG~l~i~  297 (364)
T 3p9c_A          263 ILMKWILHD--WSDQHCATLLKNCYDALPAHGKVVLV  297 (364)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEehHHhcc--CCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            999999997  45778889999999999999999987

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.33  E-value=9e-12  Score=118.57  Aligned_cols=113  Identities=15%  Similarity=0.123  Sum_probs=90.6

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..++.. .++.++++|+.+     .++...++||+|
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~-----~l~~~~~~fD~I  613 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLA-----WLREANEQFDLI  613 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHH-----HHHHCCCCEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH-----HHHhcCCCccEE
Confidence            58899999999999999988877778999999999999999999887654 369999999743     122245789999


Q ss_pred             Eeccccc-------cccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          110 CCFQHLQ-------MCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       110 ~~~~~l~-------~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ++.....       ..+........++..+.++|+|||++++.+..
T Consensus       614 i~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          614 FIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             EECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            9854211       12334567889999999999999999988665

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.33  E-value=1.9e-11  Score=98.81  Aligned_cols=104  Identities=14%  Similarity=0.067  Sum_probs=80.4

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....+.  ++.++++|+.+  +       +++||+|
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~--~-------~~~~D~v  116 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSE--F-------NSRVDIV  116 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGG--C-------CCCCSEE
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHH--c-------CCCCCEE
Confidence            46789999999999999999887666899999999999999999877654  78999999754  2       2489999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ++....+..  .......+++.+.+++  ||.++...++
T Consensus       117 ~~~~p~~~~--~~~~~~~~l~~~~~~l--~~~~~~~~~~  151 (207)
T 1wy7_A          117 IMNPPFGSQ--RKHADRPFLLKAFEIS--DVVYSIHLAK  151 (207)
T ss_dssp             EECCCCSSS--STTTTHHHHHHHHHHC--SEEEEEEECC
T ss_pred             EEcCCCccc--cCCchHHHHHHHHHhc--CcEEEEEeCC
Confidence            998766542  1223456788888888  6655554333

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.33  E-value=4.7e-12  Score=111.91  Aligned_cols=98  Identities=18%  Similarity=0.120  Sum_probs=80.9

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .+..+|||||||+|..+..++.. +..+++++|+ +.+++.|+++       .++.++.+|+.+ ++      +.+  |+
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~------p~~--D~  264 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GV------PKG--DA  264 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CC------CCC--SE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CC------CCC--CE
Confidence            45689999999999999999876 3458999999 8888776532       278999999875 44      333  99


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |++..++|+  .+.++...+++++.++|+|||.+++..
T Consensus       265 v~~~~vlh~--~~~~~~~~~l~~~~~~L~pgG~l~i~e  300 (368)
T 3reo_A          265 IFIKWICHD--WSDEHCLKLLKNCYAALPDHGKVIVAE  300 (368)
T ss_dssp             EEEESCGGG--BCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEechhhc--CCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            999999997  457778899999999999999998873

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.33  E-value=4.8e-12  Score=101.34  Aligned_cols=110  Identities=20%  Similarity=0.105  Sum_probs=78.1

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CC---------CeEEEEecChhHHHHHHHHHHhcCCCceeEEE-EcCCCCCchhh
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LI---------ANYIGIDVATSGIGEARDTWENQRKNFIAEFF-EADPCAENFET   97 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~---------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~d~~~~~~~~   97 (258)
                      +.++.+|||+|||+|..+..++.. +.         .+++|+|+|+.+.         .   .++.+. ++|+.......
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~---------~---~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP---------L---EGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC---------C---TTCEEECSCCTTSHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc---------C---CCCeEEEeccCCCHHHHH
Confidence            468899999999999999999887 43         6899999998430         0   157888 88886543211


Q ss_pred             hhh--hcCCceeEEEeccccccccCCHHHH-------HHHHHHHHhcccCCcEEEEEEcCch
Q 025059           98 QMQ--EKANQADLVCCFQHLQMCFETEERA-------RRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus        98 ~~~--~~~~~fD~V~~~~~l~~~~~~~~~~-------~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      .+.  .++++||+|++..+++.......+.       ..++.++.++|+|||.+++......
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  149 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS  149 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG
T ss_pred             HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            110  0245899999977555322211222       5889999999999999999876653

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.33  E-value=6.6e-12  Score=108.65  Aligned_cols=113  Identities=14%  Similarity=0.059  Sum_probs=84.0

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc--C-C-CceeEEEEcCCCCCchhhhhhhcC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--R-K-NFIAEFFEADPCAENFETQMQEKA  103 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~--~-~-~~~~~~~~~d~~~~~~~~~~~~~~  103 (258)
                      .+++.+|||||||+|..+..+++. +..+++++|+++.+++.|+++++..  + . ..+++++++|+..     .++...
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~-----~l~~~~  149 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARA-----YLERTE  149 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHH-----HHHHCC
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHH-----HHHhcC
Confidence            346689999999999999999876 3569999999999999999987541  1 1 2278999999743     122246


Q ss_pred             CceeEEEeccccccccCC-HHH--HHHHHHHHHhcccCCcEEEEEE
Q 025059          104 NQADLVCCFQHLQMCFET-EER--ARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~-~~~--~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ++||+|++....+..... ...  ...+++++.++|+|||++++..
T Consensus       150 ~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            789999987654430001 111  3689999999999999999884

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.33  E-value=7e-12  Score=107.99  Aligned_cols=114  Identities=11%  Similarity=-0.015  Sum_probs=81.5

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHh--cCC-CceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWEN--QRK-NFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~--~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      +++.+|||||||+|..+..+++.. ..+++++|+++.+++.|++++..  .+. ..+++++++|+..     .++...++
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~-----~l~~~~~~  168 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE-----FMKQNQDA  168 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH-----HHHTCSSC
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH-----HHhhCCCC
Confidence            456899999999999999998773 46999999999999999998764  111 2278999999632     12223578


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ||+|++....+...........+++++.++|+|||++++...+
T Consensus       169 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          169 FDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             EEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence            9999986543321000012367899999999999999988633

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.32  E-value=7.6e-12  Score=108.57  Aligned_cols=113  Identities=15%  Similarity=0.143  Sum_probs=84.1

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc--CC-CceeEEEEcCCCCCchhhhhhhcCC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--RK-NFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      .+++.+|||||||+|..+..+++. +..+++++|+|+.+++.|+++++..  .. ..+++++++|+.+     .++..++
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~-----~l~~~~~  188 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK-----FLENVTN  188 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH-----HHHHCCS
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHH-----HHhhcCC
Confidence            345689999999999999999877 4569999999999999999987641  11 2278999999633     1111357


Q ss_pred             ceeEEEeccccccccCCHHHH--HHHHHHHHhcccCCcEEEEEEcC
Q 025059          105 QADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~--~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +||+|++...-+.  ......  ..+++++.++|+|||++++...+
T Consensus       189 ~fDvIi~d~~~p~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          189 TYDVIIVDSSDPI--GPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             CEEEEEEECCCSS--SGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CceEEEECCcCCC--CcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            8999998653221  111122  68999999999999999998654

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.32  E-value=5e-12  Score=111.77  Aligned_cols=104  Identities=19%  Similarity=0.219  Sum_probs=83.6

Q ss_pred             HHHHHh--cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhh
Q 025059           23 ALIKIY--SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (258)
Q Consensus        23 ~li~~~--~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (258)
                      .++..+  .+++.+|||||||+|..+..++... ..+++++|+ +.+++.|++.       .++.++++|+.+ ++    
T Consensus       199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~----  265 (372)
T 1fp1_D          199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFA-SV----  265 (372)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CC----
T ss_pred             HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCccc-CC----
Confidence            344444  3467899999999999999998874 348999999 9998877642       168999999866 43    


Q ss_pred             hhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                        +.  ||+|++..++|+  .+.+....+++++.++|+|||.+++.
T Consensus       266 --~~--~D~v~~~~~lh~--~~d~~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          266 --PQ--GDAMILKAVCHN--WSDEKCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             --CC--EEEEEEESSGGG--SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --CC--CCEEEEeccccc--CCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence              32  999999999997  34566779999999999999999987

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.32  E-value=1.1e-11  Score=106.48  Aligned_cols=113  Identities=18%  Similarity=0.058  Sum_probs=81.4

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHh--cCC-CceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN--QRK-NFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~--~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      +++.+|||||||+|..+..+++. +..+++++|+++.+++.|++++..  ... ..++.++++|+...     ++...++
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-----l~~~~~~  163 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY-----VRKFKNE  163 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-----GGGCSSC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-----HhhCCCC
Confidence            45689999999999999999877 457999999999999999998753  111 22789999996331     1113578


Q ss_pred             eeEEEeccccccccCCHHH--HHHHHHHHHhcccCCcEEEEEEcC
Q 025059          106 ADLVCCFQHLQMCFETEER--ARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~--~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ||+|++...-+. ......  ...+++++.++|+|||++++...+
T Consensus       164 fD~Ii~d~~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          164 FDVIIIDSTDPT-AGQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             EEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ceEEEEcCCCcc-cCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            999997542220 011111  268899999999999999998654

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.31  E-value=4.5e-13  Score=113.86  Aligned_cols=108  Identities=20%  Similarity=0.070  Sum_probs=75.2

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHH-HhcCCCceeEEE--EcCCCCCchhhhhhhcCC
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW-ENQRKNFIAEFF--EADPCAENFETQMQEKAN  104 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~~  104 (258)
                      .+.++.+|||||||+|+++..++..  .+|+|+|+|+ |+..++++. .....+.++.++  ++|+..  +      +++
T Consensus        79 ~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~--l------~~~  147 (276)
T 2wa2_A           79 GVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTK--M------EPF  147 (276)
T ss_dssp             SCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGG--C------CCC
T ss_pred             CCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhh--C------CCC
Confidence            3457899999999999999988777  5899999999 543332211 111112257888  888754  2      357


Q ss_pred             ceeEEEeccccccccCCH--HHH--HHHHHHHHhcccCCc--EEEEEEcC
Q 025059          105 QADLVCCFQHLQMCFETE--ERA--RRLLQNVSSLLKPGG--YFLGITPD  148 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~--~~~--~~~l~~i~~~LkpgG--~~i~~~~~  148 (258)
                      +||+|+|..+ ++. ...  +..  ..++..+.++|+|||  .|++.+..
T Consensus       148 ~fD~Vvsd~~-~~~-~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          148 QADTVLCDIG-ESN-PTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CCSEEEECCC-CCC-SCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CcCEEEECCC-cCC-CchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            8999999876 431 111  111  137899999999999  99887544

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.31  E-value=3.2e-12  Score=106.91  Aligned_cols=114  Identities=10%  Similarity=0.040  Sum_probs=76.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc-CCceeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~fD~  108 (258)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+...++.++++|+.+.-+. .++.. +++||+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMD-ALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTT-TSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhh-hhhcccCCcccE
Confidence            5679999999999988888765 33599999999999999999998765544699999997542110 11101 268999


Q ss_pred             EEeccccccccCC-----------HHHHHHHHHHHHhcccCCcEEEEE
Q 025059          109 VCCFQHLQMCFET-----------EERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       109 V~~~~~l~~~~~~-----------~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |++....+..-..           .+....++..+.++|+|||.+.+.
T Consensus       144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             EEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence            9998544421100           011235678899999999987553

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.31  E-value=6.2e-13  Score=112.35  Aligned_cols=109  Identities=14%  Similarity=0.053  Sum_probs=75.8

Q ss_pred             HhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHH-HhcCCCceeEEE--EcCCCCCchhhhhhhcC
Q 025059           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW-ENQRKNFIAEFF--EADPCAENFETQMQEKA  103 (258)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~  103 (258)
                      ..+.++.+|||||||+|+++..++..  .+|+|+|+++ |+..++++. .....+.++.++  ++|+.+  +      ++
T Consensus        70 ~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~--l------~~  138 (265)
T 2oxt_A           70 GYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHT--L------PV  138 (265)
T ss_dssp             TSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTT--S------CC
T ss_pred             CCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhH--C------CC
Confidence            34568899999999999999888776  6899999998 533332111 111112257888  889865  3      35


Q ss_pred             CceeEEEeccccccccCCH--HHH--HHHHHHHHhcccCCc--EEEEEEcC
Q 025059          104 NQADLVCCFQHLQMCFETE--ERA--RRLLQNVSSLLKPGG--YFLGITPD  148 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~--~~~--~~~l~~i~~~LkpgG--~~i~~~~~  148 (258)
                      ++||+|+|..+ +.. ...  +..  ..++..+.++|+|||  .|++.+..
T Consensus       139 ~~fD~V~sd~~-~~~-~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          139 ERTDVIMCDVG-ESS-PKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             CCCSEEEECCC-CCC-SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             CCCcEEEEeCc-ccC-CccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            78999999876 331 221  111  138899999999999  99987643

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.31  E-value=9.8e-12  Score=107.50  Aligned_cols=111  Identities=12%  Similarity=0.035  Sum_probs=79.9

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc--CC-CceeEEEEcCCCCCchhhhhhhcCC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--RK-NFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      .+++.+|||||||+|..+..+++. +..+++++|+++.+++.|+++++..  +. ..+++++.+|+..     .++...+
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~-----~l~~~~~  180 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE-----FLKNHKN  180 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH-----HHHHCTT
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHH-----HHHhcCC
Confidence            345689999999999999999876 3469999999999999999987542  11 2378999998632     1222467


Q ss_pred             ceeEEEeccccccccCCHHHH--HHHHHHHHhcccCCcEEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~--~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +||+|++...-+.  .....+  ..+++++.++|+|||++++..
T Consensus       181 ~fD~Ii~d~~~~~--~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          181 EFDVIITDSSDPV--GPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             CEEEEEECCC---------------HHHHHHHHEEEEEEEEEEC
T ss_pred             CceEEEEcCCCCC--CcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            8999998653321  112222  789999999999999999985

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.31  E-value=2.4e-11  Score=107.50  Aligned_cols=106  Identities=9%  Similarity=-0.138  Sum_probs=84.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC-CchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~fD~  108 (258)
                      ++.+|||+| |+|..+..++..+. .+++|+|+|+.|++.|+++.+..+.. ++.++++|+.+ .+..     ..++||+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~-----~~~~fD~  244 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDY-----ALHKFDT  244 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTT-----TSSCBSE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhh-----ccCCccE
Confidence            578999999 99999999887765 69999999999999999999877654 79999999866 2210     2468999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCc-EEEEEEcC
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG-~~i~~~~~  148 (258)
                      |++....+.     .....++.++.++|+||| .+++.+..
T Consensus       245 Vi~~~p~~~-----~~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          245 FITDPPETL-----EAIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             EEECCCSSH-----HHHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             EEECCCCch-----HHHHHHHHHHHHHcccCCeEEEEEEec
Confidence            999765442     236889999999999999 44555443

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.31  E-value=9.5e-12  Score=106.09  Aligned_cols=112  Identities=14%  Similarity=0.140  Sum_probs=84.0

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcC--C-CceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR--K-NFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      +++.+|||||||+|..+..+++.. ..+++++|+++.+++.|+++++...  . ..+++++++|+..     .++...++
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~-----~l~~~~~~  151 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK-----FLENVTNT  151 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH-----HHHHCCSC
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHH-----HHHhCCCC
Confidence            466899999999999999998763 4699999999999999999875421  0 2278999999733     11113678


Q ss_pred             eeEEEeccccccccCCHHHH--HHHHHHHHhcccCCcEEEEEEcC
Q 025059          106 ADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~--~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ||+|++....+.  .....+  ..+++++.++|+|||++++...+
T Consensus       152 fD~Ii~d~~~~~--~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          152 YDVIIVDSSDPI--GPAETLFNQNFYEKIYNALKPNGYCVAQCES  194 (283)
T ss_dssp             EEEEEEECCCTT--TGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ceEEEEcCCCCC--CcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence            999998543322  111222  68999999999999999998554

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.30  E-value=5.7e-12  Score=107.02  Aligned_cols=114  Identities=12%  Similarity=0.069  Sum_probs=83.7

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc--CC-CceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--RK-NFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      +.+.+|||||||+|..+..+++. +..+++++|+++.+++.|+++++..  .. ..+++++.+|+..     .++...++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~-----~l~~~~~~  148 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFM-----HIAKSENQ  148 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHH-----HHHTCCSC
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHH-----HHhhCCCC
Confidence            45689999999999999999877 5579999999999999999987531  11 2378999999742     12223578


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ||+|++....+......-....+++.+.++|+|||++++...+
T Consensus       149 fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            9999986533221000001257899999999999999998544

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.30  E-value=1.6e-11  Score=104.80  Aligned_cols=103  Identities=14%  Similarity=0.090  Sum_probs=77.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|.++..++..+. +++|+|+|+.+++.++++....+...+++++++|+.+.++        ..||+
T Consensus        26 ~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~--------~~fD~   96 (285)
T 1zq9_A           26 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL--------PFFDT   96 (285)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC--------CCCSE
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc--------hhhcE
Confidence            45788999999999999999988765 9999999999999999988654332378999999976554        37999


Q ss_pred             EEeccccccccCCHHHHHHHHH--------------HH--HhcccCCcEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQ--------------NV--SSLLKPGGYFL  143 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~--------------~i--~~~LkpgG~~i  143 (258)
                      |+++...+.   ..+-...++.              ++  +++|+|||.++
T Consensus        97 vv~nlpy~~---~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           97 CVANLPYQI---SSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             EEEECCGGG---HHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             EEEecCccc---chHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            999765554   1222223332              22  35889999874

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.30  E-value=3.9e-12  Score=109.61  Aligned_cols=108  Identities=16%  Similarity=0.051  Sum_probs=74.6

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEec----ChhHHHHHHHHHHhcCCCceeEEEEc-CCCCCchhhhhhhc
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDV----ATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEK  102 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~----s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~  102 (258)
                      .++++.+|||||||+|+++..++..  ++|+|+|+    ++.+++.+.  ....+ ...+.++++ |+...        +
T Consensus        79 ~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l--------~  145 (305)
T 2p41_A           79 LVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFI--------P  145 (305)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTS--------C
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccC--------C
Confidence            4567899999999999999988777  58999999    565442111  01000 126888888 87553        3


Q ss_pred             CCceeEEEeccccccccCC-HHH--HHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          103 ANQADLVCCFQHLQMCFET-EER--ARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~-~~~--~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .++||+|+|..+.+ .... .+.  ...++..+.++|+|||.|++.++..
T Consensus       146 ~~~fD~V~sd~~~~-~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          146 PERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             CCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             cCCCCEEEECCccc-cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            46899999977653 1111 111  1258899999999999999987665

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.30  E-value=5.9e-12  Score=111.82  Aligned_cols=115  Identities=13%  Similarity=0.086  Sum_probs=87.8

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|.++..++.. ..+++|+|+|+.+++.|+++...++.. ++.++++|+.+.  ...+.....+||+|+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~--~~~~~~~~~~fD~Ii  284 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDL--LRRLEKEGERFDLVV  284 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHH--HHHHHHTTCCEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHH--HHHHHhcCCCeeEEE
Confidence            6789999999999999999887 558999999999999999999877643 389999997432  111211257899999


Q ss_pred             eccccc-----cccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          111 CFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       111 ~~~~l~-----~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +.-...     ...........++..+.++|+|||.+++.+...
T Consensus       285 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          285 LDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  328 (382)
T ss_dssp             ECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            853211     011123567889999999999999999987664

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.30  E-value=4.9e-12  Score=110.27  Aligned_cols=112  Identities=13%  Similarity=0.071  Sum_probs=81.9

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhc--CC-CceeEEEEcCCCCCchhhhhhh-cCC
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQ--RK-NFIAEFFEADPCAENFETQMQE-KAN  104 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~-~~~  104 (258)
                      +++.+|||||||+|..+..+++.. ..+++++|+|+.+++.|+++++..  +. ..+++++++|+...     ++. +++
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~-----l~~~~~~  193 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF-----LKNAAEG  193 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH-----HHTSCTT
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH-----HHhccCC
Confidence            456899999999999999998763 469999999999999999987642  11 12789999997331     111 357


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +||+|++................+++++.++|+|||++++..
T Consensus       194 ~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          194 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            899999865321100000113689999999999999999973

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.29  E-value=3e-12  Score=106.06  Aligned_cols=100  Identities=11%  Similarity=0.027  Sum_probs=67.3

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEE-EcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFF-EADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|+++.+.      +... ..++..... ..+  ....||.+
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~------~~~~~~~~~~~~~~-~~~--~~~~~d~~  107 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER------VVVMEQFNFRNAVL-ADF--EQGRPSFT  107 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT------EEEECSCCGGGCCG-GGC--CSCCCSEE
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc------ccccccceEEEeCH-hHc--CcCCCCEE
Confidence            5679999999999999999888766999999999999988765432      1111 111111000 001  11134555


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ++..++..       +..++.++.++|+|||.+++.+
T Consensus       108 ~~D~v~~~-------l~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          108 SIDVSFIS-------LDLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             EECCSSSC-------GGGTHHHHHHHSCTTCEEEEEE
T ss_pred             EEEEEhhh-------HHHHHHHHHHhccCCCEEEEEE
Confidence            54443332       2679999999999999999874

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.28  E-value=1.3e-11  Score=106.47  Aligned_cols=112  Identities=11%  Similarity=0.088  Sum_probs=81.7

Q ss_pred             CEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      .+|||||||+|..+..+++. +..+++++|+++.+++.|++++.... ..+++++++|+..  +....  +.++||+|++
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~--~l~~~--~~~~fDvIi~  165 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARM--VAESF--TPASRDVIIR  165 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHH--HHHTC--CTTCEEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHH--HHhhc--cCCCCCEEEE
Confidence            49999999999999999884 44599999999999999999875421 2378999999743  11111  3578999998


Q ss_pred             ccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ....+......-....+++.+.++|+|||++++...+.
T Consensus       166 D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~  203 (317)
T 3gjy_A          166 DVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH  203 (317)
T ss_dssp             CCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred             CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            64333211100012679999999999999999886543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.27  E-value=7.9e-12  Score=109.66  Aligned_cols=99  Identities=15%  Similarity=0.103  Sum_probs=81.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .+++.+|||||||+|..+..++.. +..+++++|+ +.+++.|++.    .   ++.++.+|+.+ ++      +  .||
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~---~v~~~~~d~~~-~~------p--~~D  248 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----N---NLTYVGGDMFT-SI------P--NAD  248 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----T---TEEEEECCTTT-CC------C--CCS
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----C---CcEEEeccccC-CC------C--Ccc
Confidence            446789999999999999999876 3458999999 9999887641    1   58999999865 33      3  399


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccC---CcEEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKP---GGYFLGIT  146 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp---gG~~i~~~  146 (258)
                      +|++..++|+  .+.+....+++++.++|+|   ||.+++..
T Consensus       249 ~v~~~~~lh~--~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          249 AVLLKYILHN--WTDKDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             EEEEESCGGG--SCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             EEEeehhhcc--CCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            9999999997  3456667999999999999   99998874

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.27  E-value=7.7e-12  Score=104.05  Aligned_cols=104  Identities=16%  Similarity=0.160  Sum_probs=84.8

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .+..+|||||||+|-++..+... +..+|+++|+++.|++.++.++...+.  ...+.+.|....+       +.++||+
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~--~~~~~v~D~~~~~-------p~~~~Dv  201 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV--PHRTNVADLLEDR-------LDEPADV  201 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC--CEEEEECCTTTSC-------CCSCCSE
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeecccC-------CCCCcch
Confidence            45689999999999999999877 567999999999999999999987755  5788999986655       4789999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |++.-.+|++ + .+.....+ .+...|+|+|+++-.
T Consensus       202 aL~lkti~~L-e-~q~kg~g~-~ll~aL~~~~vvVSf  235 (281)
T 3lcv_B          202 TLLLKTLPCL-E-TQQRGSGW-EVIDIVNSPNIVVTF  235 (281)
T ss_dssp             EEETTCHHHH-H-HHSTTHHH-HHHHHSSCSEEEEEE
T ss_pred             HHHHHHHHHh-h-hhhhHHHH-HHHHHhCCCCEEEec
Confidence            9999999872 2 22233455 899999999988654

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.27  E-value=2.3e-11  Score=100.26  Aligned_cols=103  Identities=17%  Similarity=0.044  Sum_probs=81.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||||||.|.++..+.  +...|+|+||++.+++.++++....+.  +..+.++|....++       .+++|+|
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~-------~~~~Dvv  172 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPP-------AEAGDLA  172 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCC-------CCBCSEE
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCC-------CCCcchH
Confidence            467899999999999998887  666999999999999999999876643  78999999877664       5799999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ++.-.+|++ +  ...+...-++...|+++|+++ ++|
T Consensus       173 Lllk~lh~L-E--~q~~~~~~~ll~aL~~~~vvV-sfP  206 (253)
T 3frh_A          173 LIFKLLPLL-E--REQAGSAMALLQSLNTPRMAV-SFP  206 (253)
T ss_dssp             EEESCHHHH-H--HHSTTHHHHHHHHCBCSEEEE-EEE
T ss_pred             HHHHHHHHh-h--hhchhhHHHHHHHhcCCCEEE-EcC
Confidence            999888862 2  222233338888999998775 444

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.25  E-value=9.6e-13  Score=103.95  Aligned_cols=94  Identities=11%  Similarity=0.050  Sum_probs=73.9

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      -+.++.+|||+|||.               +++|+|+.|++.|+++...     ++.+.++|+.+.++..   .++++||
T Consensus         9 g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~---~~~~~fD   65 (176)
T 2ld4_A            9 GISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSA---HKESSFD   65 (176)
T ss_dssp             TCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGC---CCSSCEE
T ss_pred             CCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCcccc---CCCCCEe
Confidence            367899999999986               2399999999999988643     3788999986544310   0367999


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      +|++..++|+..   .+...++++++++|||||.+++..|
T Consensus        66 ~V~~~~~l~~~~---~~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           66 IILSGLVPGSTT---LHSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             EEEECCSTTCCC---CCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEECChhhhcc---cCHHHHHHHHHHHCCCCEEEEEEcc
Confidence            999999999841   2357899999999999999998533

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.25  E-value=9e-11  Score=106.35  Aligned_cols=115  Identities=21%  Similarity=0.175  Sum_probs=84.5

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..++.+|||+|||+|+.+..++..  +.++++++|+++.+++.++++....+.. ++.++++|+...+.  .+  ++++|
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~--~~--~~~~f  331 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPE--II--GEEVA  331 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSS--SS--CSSCE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcch--hh--ccCCC
Confidence            347889999999999999998875  2269999999999999999998876543 68999999876431  01  34789


Q ss_pred             eEEEec-----c-ccccc--------cCCHH----HHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          107 DLVCCF-----Q-HLQMC--------FETEE----RARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       107 D~V~~~-----~-~l~~~--------~~~~~----~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |+|++.     . .++..        -....    ....++.++.++|+|||.++.+++.
T Consensus       332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs  391 (450)
T 2yxl_A          332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS  391 (450)
T ss_dssp             EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            999862     1 11110        00011    1267899999999999999988654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.24  E-value=7.1e-11  Score=106.39  Aligned_cols=113  Identities=14%  Similarity=0.095  Sum_probs=84.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|||+|+.+..++.... ++++++|+++.+++.+++++...+.  ++.++++|+...+-  .+  +.++||+
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~--~~--~~~~fD~  318 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQ--WC--GEQQFDR  318 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHH--HH--TTCCEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchh--hc--ccCCCCE
Confidence            4788999999999999999887643 6999999999999999999887654  57899999876431  11  3578999


Q ss_pred             EEecc------cccccc-----CCH-------HHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQ------HLQMCF-----ETE-------ERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~------~l~~~~-----~~~-------~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++..      .++..-     .+.       .....++.++.++|+|||.++.++++
T Consensus       319 Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs  376 (429)
T 1sqg_A          319 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS  376 (429)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred             EEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            98632      111100     001       11258899999999999999998643

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.23  E-value=1.4e-11  Score=107.75  Aligned_cols=109  Identities=22%  Similarity=0.246  Sum_probs=85.5

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCC------CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALI------ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      ++.+|||+|||+|.++..++....      .+++|+|+++.+++.|+.++...+.  ++.+.++|.....       ..+
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~-------~~~  200 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-------LVD  200 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-------CCC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc-------ccC
Confidence            568999999999999988876521      5899999999999999998876544  6789999975532       357


Q ss_pred             ceeEEEeccccccccCCHHH---------------HHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          105 QADLVCCFQHLQMCFETEER---------------ARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~---------------~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +||+|+++..+++. ...+.               ...++..+.+.|+|||.+++.+|++
T Consensus       201 ~fD~Ii~NPPfg~~-~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          201 PVDVVISDLPVGYY-PDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             CEEEEEEECCCSEE-SCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             CccEEEECCCCCCc-CchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            89999998766542 22221               1368999999999999999998764

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.23  E-value=3.3e-11  Score=105.22  Aligned_cols=105  Identities=12%  Similarity=0.070  Sum_probs=84.0

Q ss_pred             HHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      ...+.++.+|||+|||+|.++.. +. +..+++|+|+|+.+++.|+++...++...++.++++|+.+.        . ++
T Consensus       190 ~~~~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~--------~-~~  258 (336)
T 2yx1_A          190 MKKVSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV--------D-VK  258 (336)
T ss_dssp             HHHCCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC--------C-CC
T ss_pred             HHhcCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh--------c-CC
Confidence            34556789999999999999988 76 56699999999999999999998876544789999997442        1 68


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ||+|++... ++       ...++..+.++|+|||.+++.....
T Consensus       259 fD~Vi~dpP-~~-------~~~~l~~~~~~L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          259 GNRVIMNLP-KF-------AHKFIDKALDIVEEGGVIHYYTIGK  294 (336)
T ss_dssp             EEEEEECCT-TT-------GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred             CcEEEECCc-Hh-------HHHHHHHHHHHcCCCCEEEEEEeec
Confidence            999988532 11       2378889999999999998874443

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.22  E-value=1.6e-11  Score=111.17  Aligned_cols=112  Identities=19%  Similarity=0.126  Sum_probs=83.2

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++.+|||+|||+|+.+..++..  +.+.|+++|+|+.+++.++++++..+..  +.++++|+....  ..   ..++||
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~--~~---~~~~FD  172 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALA--EA---FGTYFH  172 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHH--HH---HCSCEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhh--hh---ccccCC
Confidence            47899999999999999998876  3358999999999999999999877653  788888864322  11   357899


Q ss_pred             EEEeccc------ccc------ccC--C----HHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          108 LVCCFQH------LQM------CFE--T----EERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       108 ~V~~~~~------l~~------~~~--~----~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +|++...      ++.      ...  .    ......++.++.++|||||.++.+++.
T Consensus       173 ~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs  231 (464)
T 3m6w_A          173 RVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT  231 (464)
T ss_dssp             EEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             EEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence            9986221      110      000  0    112378999999999999999987654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.20  E-value=1.1e-10  Score=106.48  Aligned_cols=112  Identities=12%  Similarity=0.034  Sum_probs=84.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ++.+|||+|||+|+.+..++..  +.+.|+++|+|+.+++.++++++..+.. ++.++++|+...+..     ..++||+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~-----~~~~fD~  190 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAA-----VPEMFDA  190 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHH-----STTCEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhh-----ccccCCE
Confidence            7899999999999999988876  2469999999999999999998876543 688999998653210     2568999


Q ss_pred             EEecc------cccccc-----CCH-------HHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQ------HLQMCF-----ETE-------ERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~------~l~~~~-----~~~-------~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++..      .++..-     .+.       .....++.++.++|||||.++.+++.
T Consensus       191 Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs  248 (479)
T 2frx_A          191 ILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT  248 (479)
T ss_dssp             EEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence            98731      111100     011       12357899999999999999998654

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.19  E-value=1.4e-10  Score=99.55  Aligned_cols=79  Identities=19%  Similarity=0.185  Sum_probs=60.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|.++..++..+ .+++|+|+++.+++.|+++....+. .++.++++|+...++        .+||+
T Consensus        40 ~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~--------~~~D~  109 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF--------PKFDV  109 (299)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC--------CCCSE
T ss_pred             CCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc--------ccCCE
Confidence            4578899999999999999998764 4999999999999999998865433 278999999876443        48999


Q ss_pred             EEecccccc
Q 025059          109 VCCFQHLQM  117 (258)
Q Consensus       109 V~~~~~l~~  117 (258)
                      |++....+.
T Consensus       110 Vv~n~py~~  118 (299)
T 2h1r_A          110 CTANIPYKI  118 (299)
T ss_dssp             EEEECCGGG
T ss_pred             EEEcCCccc
Confidence            998765443

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.18  E-value=8.5e-11  Score=106.25  Aligned_cols=113  Identities=14%  Similarity=0.073  Sum_probs=83.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++.+|||+|||+|+.+..++..  +.+.|+++|+|+.+++.++++++..+.. ++.+.++|+....  ..   .+++||
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~--~~---~~~~FD  177 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELV--PH---FSGFFD  177 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHH--HH---HTTCEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhh--hh---ccccCC
Confidence            47899999999999999888775  3469999999999999999999877653 5888888864321  11   257899


Q ss_pred             EEEeccccc--cccC-CH---------------HHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          108 LVCCFQHLQ--MCFE-TE---------------ERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       108 ~V~~~~~l~--~~~~-~~---------------~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +|++.....  .++. +.               .....++.++.++|||||.++.+++.
T Consensus       178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs  236 (456)
T 3m4x_A          178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT  236 (456)
T ss_dssp             EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred             EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence            998743210  0011 11               12348899999999999999987654

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.16  E-value=7.9e-11  Score=103.50  Aligned_cols=97  Identities=16%  Similarity=0.132  Sum_probs=79.7

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .+..+|||||||+|..+..++... ..+++++|+ +.+++.|++.       .++.++.+|+.+ ++      +  .||+
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~------~--~~D~  254 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN-------ENLNFVGGDMFK-SI------P--SADA  254 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC-------SSEEEEECCTTT-CC------C--CCSE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC-------CCcEEEeCccCC-CC------C--CceE
Confidence            366899999999999999998873 348999999 7888776541       158999999866 43      3  4999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccC---CcEEEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKP---GGYFLGI  145 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp---gG~~i~~  145 (258)
                      |++..++|+  .+.+....+++++.++|+|   ||.+++.
T Consensus       255 v~~~~vlh~--~~d~~~~~~l~~~~~~L~p~~~gG~l~i~  292 (358)
T 1zg3_A          255 VLLKWVLHD--WNDEQSLKILKNSKEAISHKGKDGKVIII  292 (358)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred             EEEcccccC--CCHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            999999997  3456677999999999999   9999887

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.15  E-value=6.9e-10  Score=94.93  Aligned_cols=78  Identities=14%  Similarity=0.006  Sum_probs=65.5

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||||||+|.++..++..+ .+|+|+|+++.+++.+++++....   ++.++++|+.+.++      +...||+
T Consensus        48 ~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~~---~v~vi~gD~l~~~~------~~~~fD~  117 (295)
T 3gru_A           48 LTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELYN---NIEIIWGDALKVDL------NKLDFNK  117 (295)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHCS---SEEEEESCTTTSCG------GGSCCSE
T ss_pred             CCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccCC---CeEEEECchhhCCc------ccCCccE
Confidence            4578899999999999999998875 499999999999999999987432   78999999987666      4567999


Q ss_pred             EEeccccc
Q 025059          109 VCCFQHLQ  116 (258)
Q Consensus       109 V~~~~~l~  116 (258)
                      |+++...+
T Consensus       118 Iv~NlPy~  125 (295)
T 3gru_A          118 VVANLPYQ  125 (295)
T ss_dssp             EEEECCGG
T ss_pred             EEEeCccc
Confidence            99876544

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.14  E-value=1.7e-10  Score=102.52  Aligned_cols=125  Identities=16%  Similarity=0.139  Sum_probs=91.1

Q ss_pred             HHHHHHHH-hcCCCCEEEEEcCCCCccHHHHHHcCC---------------------------------------CeEEE
Q 025059           20 AKTALIKI-YSHPYVTVCDLYCGAGVDVDKWETALI---------------------------------------ANYIG   59 (258)
Q Consensus        20 ~k~~li~~-~~~~~~~VLDlGcG~G~~~~~~~~~~~---------------------------------------~~v~g   59 (258)
                      +...++.. ...++.+|||++||+|.++..++....                                       .+++|
T Consensus       183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  262 (385)
T 3ldu_A          183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG  262 (385)
T ss_dssp             HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred             HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence            33334433 345788999999999999888765421                                       37999


Q ss_pred             EecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccC-
Q 025059           60 IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP-  138 (258)
Q Consensus        60 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp-  138 (258)
                      +|+++.|++.|+++....+....+.|.++|+.+.+.       +.+||+|+++-....-....+.+..+...+.+.|++ 
T Consensus       263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~-------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~  335 (385)
T 3ldu_A          263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS-------EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL  335 (385)
T ss_dssp             EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC-------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc-------CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC
Confidence            999999999999999877655579999999866442       468999999754332122345667777777777776 


Q ss_pred             -CcEEEEEEcCchH
Q 025059          139 -GGYFLGITPDSST  151 (258)
Q Consensus       139 -gG~~i~~~~~~~~  151 (258)
                       ||.+.+.+++...
T Consensus       336 ~g~~~~iit~~~~l  349 (385)
T 3ldu_A          336 KNWSYYLITSYEDF  349 (385)
T ss_dssp             BSCEEEEEESCTTH
T ss_pred             CCCEEEEEECCHHH
Confidence             8888888776543

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.13  E-value=5.2e-10  Score=99.20  Aligned_cols=117  Identities=11%  Similarity=0.034  Sum_probs=90.6

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCC---------------------------------------CeEEEEecChhHHH
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALI---------------------------------------ANYIGIDVATSGIG   68 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~---------------------------------------~~v~gvD~s~~~l~   68 (258)
                      ..+++..|||.+||+|.++..++....                                       .+++|+|+++.|++
T Consensus       191 ~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~  270 (384)
T 3ldg_A          191 NWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVE  270 (384)
T ss_dssp             TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHH
T ss_pred             CCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHH
Confidence            345788999999999999887765321                                       35999999999999


Q ss_pred             HHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccC--CcEEEEEE
Q 025059           69 EARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP--GGYFLGIT  146 (258)
Q Consensus        69 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp--gG~~i~~~  146 (258)
                      .|+++....+....+.+.++|+.+.+.       ..+||+|+++-..+.-+...+.+..+...+.+.|++  ||.+.+.+
T Consensus       271 ~Ar~Na~~~gl~~~I~~~~~D~~~l~~-------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  343 (384)
T 3ldg_A          271 IARKNAREVGLEDVVKLKQMRLQDFKT-------NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILT  343 (384)
T ss_dssp             HHHHHHHHTTCTTTEEEEECCGGGCCC-------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred             HHHHHHHHcCCCCceEEEECChHHCCc-------cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence            999999887665569999999866443       358999999844332235567777787777777776  99998888


Q ss_pred             cCchH
Q 025059          147 PDSST  151 (258)
Q Consensus       147 ~~~~~  151 (258)
                      ++...
T Consensus       344 ~~~~l  348 (384)
T 3ldg_A          344 NDTDF  348 (384)
T ss_dssp             SCTTH
T ss_pred             CCHHH
Confidence            87653

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.13  E-value=8e-11  Score=99.22  Aligned_cols=100  Identities=10%  Similarity=-0.025  Sum_probs=77.3

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc--C-CCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--R-KNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~-~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      +.+.+|||||||+|..+..+++.+ .+++++|+++.+++.|+++++..  . ...+++++.+|+..  +      . ++|
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~--~------~-~~f  140 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDL--D------I-KKY  140 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGS--C------C-CCE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHH--H------H-hhC
Confidence            356899999999999999888776 89999999999999998866431  0 11268899888743  2      1 689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |+|++...     ...    .+++.+.++|+|||++++...+
T Consensus       141 D~Ii~d~~-----dp~----~~~~~~~~~L~pgG~lv~~~~~  173 (262)
T 2cmg_A          141 DLIFCLQE-----PDI----HRIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_dssp             EEEEESSC-----CCH----HHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CEEEECCC-----ChH----HHHHHHHHhcCCCcEEEEEcCC
Confidence            99988631     222    3899999999999999987544

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.12  E-value=4.3e-10  Score=101.03  Aligned_cols=106  Identities=22%  Similarity=0.095  Sum_probs=78.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|.++..++... .+++|+|+|+.|++.|+++...++..  +.|+++|+.+..        ..+||+
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~--------~~~fD~  356 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVS--------VKGFDT  356 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCC--------CTTCSE
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcC--------ccCCCE
Confidence            4678899999999999999988764 49999999999999999998876543  899999986632        128999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHH
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~  153 (258)
                      |++...-..  .    ...+++.+. .|+|||++++++ +...+.
T Consensus       357 Vv~dPPr~g--~----~~~~~~~l~-~l~p~givyvsc-~p~tla  393 (425)
T 2jjq_A          357 VIVDPPRAG--L----HPRLVKRLN-REKPGVIVYVSC-NPETFA  393 (425)
T ss_dssp             EEECCCTTC--S----CHHHHHHHH-HHCCSEEEEEES-CHHHHH
T ss_pred             EEEcCCccc--h----HHHHHHHHH-hcCCCcEEEEEC-ChHHHH
Confidence            988643211  1    123444444 489999988874 433333

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.12  E-value=2.6e-10  Score=101.51  Aligned_cols=123  Identities=19%  Similarity=0.119  Sum_probs=88.5

Q ss_pred             HHHHHH-hcCCCCEEEEEcCCCCccHHHHHHcCC---------------------------------------CeEEEEe
Q 025059           22 TALIKI-YSHPYVTVCDLYCGAGVDVDKWETALI---------------------------------------ANYIGID   61 (258)
Q Consensus        22 ~~li~~-~~~~~~~VLDlGcG~G~~~~~~~~~~~---------------------------------------~~v~gvD   61 (258)
                      ..++.. ...++..|||++||+|.++..++....                                       .+++|+|
T Consensus       191 a~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvD  270 (393)
T 3k0b_A          191 AALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGD  270 (393)
T ss_dssp             HHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEE
T ss_pred             HHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEE
Confidence            334333 345788999999999999877765421                                       3599999


Q ss_pred             cChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccC--C
Q 025059           62 VATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP--G  139 (258)
Q Consensus        62 ~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp--g  139 (258)
                      +++.|++.|+++....+....+.+.++|+.+.+.       ..+||+|+++-....-....+.+..+...+.+.|++  |
T Consensus       271 id~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~-------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g  343 (393)
T 3k0b_A          271 IDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT-------EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPT  343 (393)
T ss_dssp             SCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC-------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             CCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC-------CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCC
Confidence            9999999999999887665468999999866443       458999999843221112234556666666666665  9


Q ss_pred             cEEEEEEcCchH
Q 025059          140 GYFLGITPDSST  151 (258)
Q Consensus       140 G~~i~~~~~~~~  151 (258)
                      |.+.+.+++...
T Consensus       344 ~~~~iit~~~~l  355 (393)
T 3k0b_A          344 WSVYVLTSYELF  355 (393)
T ss_dssp             CEEEEEECCTTH
T ss_pred             CEEEEEECCHHH
Confidence            998888877653

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.11  E-value=1.2e-09  Score=98.59  Aligned_cols=111  Identities=17%  Similarity=0.156  Sum_probs=79.1

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+|||+|.++..++.. ..+++|+|+|+.+++.|+++...++.. ++.|+++|+.+...  .++...++||+
T Consensus       284 ~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~--~~~~~~~~fD~  359 (433)
T 1uwv_A          284 VQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVT--KQPWAKNGFDK  359 (433)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCS--SSGGGTTCCSE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhh--hhhhhcCCCCE
Confidence            346789999999999999999877 459999999999999999998876544 79999999866210  00114568999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~  152 (258)
                      |++.-.-..       ...++..+.+ ++|+++++++ .+...+
T Consensus       360 Vv~dPPr~g-------~~~~~~~l~~-~~p~~ivyvs-c~p~tl  394 (433)
T 1uwv_A          360 VLLDPARAG-------AAGVMQQIIK-LEPIRIVYVS-CNPATL  394 (433)
T ss_dssp             EEECCCTTC-------CHHHHHHHHH-HCCSEEEEEE-SCHHHH
T ss_pred             EEECCCCcc-------HHHHHHHHHh-cCCCeEEEEE-CChHHH
Confidence            988543221       1234444443 7898887775 344333

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.09  E-value=1.8e-10  Score=104.20  Aligned_cols=112  Identities=18%  Similarity=0.113  Sum_probs=83.7

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--------------CCCeEEEEecChhHHHHHHHHHHhcCCCc-eeEEEEcCCCCCch
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--------------LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENF   95 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~   95 (258)
                      ++.+|||+|||+|+++..++..              ...+++|+|+++.+++.|+.++..++... ...+.++|....+.
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~  250 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  250 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence            5679999999999999887654              12479999999999999998887654422 56789999865442


Q ss_pred             hhhhhhcCCceeEEEeccccccccCC-------------HHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059           96 ETQMQEKANQADLVCCFQHLQMCFET-------------EERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~-------------~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                             ..+||+|+++-........             ......+++++.++|+|||.+.+.+|++
T Consensus       251 -------~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~  310 (445)
T 2okc_A          251 -------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  310 (445)
T ss_dssp             -------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             -------cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc
Confidence                   3489999997544321110             0112478999999999999999998764

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.07  E-value=2.6e-10  Score=102.02  Aligned_cols=102  Identities=20%  Similarity=0.229  Sum_probs=76.7

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ++.+|||+|||+|.++..+++.  ...+++|+|+++.+++.|      .    ++.++++|+.+..       ..++||+
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------~----~~~~~~~D~~~~~-------~~~~fD~  101 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------P----WAEGILADFLLWE-------PGEAFDL  101 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------T----TEEEEESCGGGCC-------CSSCEEE
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------C----CCcEEeCChhhcC-------ccCCCCE
Confidence            5679999999999999988875  446999999999999877      1    6789999975432       3478999


Q ss_pred             EEeccccccccC--------CHHH-----------------HHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          109 VCCFQHLQMCFE--------TEER-----------------ARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~~l~~~~~--------~~~~-----------------~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |+++-.....-.        ..+.                 ...+++.+.++|+|||.+++.+|+.
T Consensus       102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A          102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence            999632211000        0111                 2267999999999999999998875

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.03  E-value=1.9e-09  Score=91.14  Aligned_cols=111  Identities=14%  Similarity=0.017  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh
Q 025059           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (258)
Q Consensus        18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   97 (258)
                      +++...+-..-..++ +|||||||+|.++..++..+ .+|+|+|+++.|++.+++++...    +++++++|+...++. 
T Consensus        34 ~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~~----~v~vi~~D~l~~~~~-  106 (271)
T 3fut_A           34 AHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSGL----PVRLVFQDALLYPWE-  106 (271)
T ss_dssp             HHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTTS----SEEEEESCGGGSCGG-
T ss_pred             HHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCCC----CEEEEECChhhCChh-
Confidence            344443333335577 99999999999999998876 48999999999999999988642    799999999776652 


Q ss_pred             hhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                          ....+|.|+++...+.   +.+-+..++..   ..-+.+++++.
T Consensus       107 ----~~~~~~~iv~NlPy~i---ss~il~~ll~~---~~~~~~~lm~Q  144 (271)
T 3fut_A          107 ----EVPQGSLLVANLPYHI---ATPLVTRLLKT---GRFARLVFLVQ  144 (271)
T ss_dssp             ----GSCTTEEEEEEECSSC---CHHHHHHHHHH---CCEEEEEEEEE
T ss_pred             ----hccCccEEEecCcccc---cHHHHHHHhcC---CCCCEEEEEee
Confidence                1136888877654332   34555555554   22234555554

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.01  E-value=4.1e-11  Score=99.91  Aligned_cols=103  Identities=9%  Similarity=0.002  Sum_probs=72.5

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc-CCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~fD  107 (258)
                      ..++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.|+++....   .+++++++|+.+.++      + +++| 
T Consensus        27 ~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~------~~~~~f-   95 (245)
T 1yub_A           27 LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLN---TRVTLIHQDILQFQF------PNKQRY-   95 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTC---SEEEECCSCCTTTTC------CCSSEE-
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhccC---CceEEEECChhhcCc------ccCCCc-
Confidence            3477899999999999999998876 59999999999999988776522   278999999977654      3 3678 


Q ss_pred             EEEeccccccccCCHHHHHHHH--------------HHHHhcccCCcEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLL--------------QNVSSLLKPGGYFLGI  145 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l--------------~~i~~~LkpgG~~i~~  145 (258)
                      .|+++...+   .+......++              +.+.++|+|||.+.+.
T Consensus        96 ~vv~n~Py~---~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~  144 (245)
T 1yub_A           96 KIVGNIPYH---LSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL  144 (245)
T ss_dssp             EEEEECCSS---SCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred             EEEEeCCcc---ccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence            555543221   1222222332              4577777777766543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.01  E-value=2.5e-09  Score=89.60  Aligned_cols=75  Identities=13%  Similarity=0.142  Sum_probs=60.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||||||+|.++..++..+ .+++|+|+++.|++.+++++...   .+++++++|+.+.++....  ..++||+
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~--~~~~~~v  100 (255)
T 3tqs_A           27 PQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQQ---KNITIYQNDALQFDFSSVK--TDKPLRV  100 (255)
T ss_dssp             CCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTTC---TTEEEEESCTTTCCGGGSC--CSSCEEE
T ss_pred             CCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhhC---CCcEEEEcchHhCCHHHhc--cCCCeEE
Confidence            4578999999999999999998876 59999999999999999998652   2789999999887663221  1357884


Q ss_pred             E
Q 025059          109 V  109 (258)
Q Consensus       109 V  109 (258)
                      |
T Consensus       101 v  101 (255)
T 3tqs_A          101 V  101 (255)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.99  E-value=3.1e-09  Score=94.06  Aligned_cols=105  Identities=10%  Similarity=0.002  Sum_probs=80.5

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc---------------CCCceeEEEEcCCCCCc
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ---------------RKNFIAEFFEADPCAEN   94 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~---------------~~~~~~~~~~~d~~~~~   94 (258)
                      ++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++.+.+               +.. ++.++++|+... 
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~-  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRL-  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHH-
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHH-
Confidence            6789999999999999998887 5558999999999999999998876               443 488999997431 


Q ss_pred             hhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus        95 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                          +....++||+|++.- . +  .    ...++..+.+.|+|||.++++..+.
T Consensus       125 ----~~~~~~~fD~I~lDP-~-~--~----~~~~l~~a~~~lk~gG~l~vt~td~  167 (378)
T 2dul_A          125 ----MAERHRYFHFIDLDP-F-G--S----PMEFLDTALRSAKRRGILGVTATDG  167 (378)
T ss_dssp             ----HHHSTTCEEEEEECC-S-S--C----CHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred             ----HHhccCCCCEEEeCC-C-C--C----HHHHHHHHHHhcCCCCEEEEEeecc
Confidence                111245899998542 1 1  1    2467888889999999998885443

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.98  E-value=3.7e-09  Score=93.77  Aligned_cols=107  Identities=16%  Similarity=0.163  Sum_probs=82.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCce-eEEEEcCCCCCchhhhhh-hcCCc
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADPCAENFETQMQ-EKANQ  105 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~-~~~~~  105 (258)
                      .++.+|||++||+|..+..++..  +..+++++|+++.+++.++++++.++...+ +.++++|+..  +   +. ...++
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~--~---l~~~~~~~  125 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANF--F---LRKEWGFG  125 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHH--H---HHSCCSSC
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHH--H---HHHhhCCC
Confidence            36789999999999999988875  346899999999999999999988776544 8999999733  1   11 12458


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ||+|++.-   +  ..   ...++..+.++|+|||+++++..+.
T Consensus       126 fD~V~lDP---~--g~---~~~~l~~a~~~Lk~gGll~~t~t~~  161 (392)
T 3axs_A          126 FDYVDLDP---F--GT---PVPFIESVALSMKRGGILSLTATDT  161 (392)
T ss_dssp             EEEEEECC---S--SC---CHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred             CcEEEECC---C--cC---HHHHHHHHHHHhCCCCEEEEEecch
Confidence            99998754   1  11   2357888889999999998886543

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.98  E-value=5e-09  Score=92.44  Aligned_cols=112  Identities=12%  Similarity=0.128  Sum_probs=79.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc--------
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--------  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------  102 (258)
                      .+.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|+++.+.++.. ++.|+++|+.+.  ...+...        
T Consensus       213 ~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~d~~~~--~~~~~~~~~~~~l~~  288 (369)
T 3bt7_A          213 SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEF--TQAMNGVREFNRLQG  288 (369)
T ss_dssp             CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECCCSHHH--HHHHSSCCCCTTGGG
T ss_pred             CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECCHHHH--HHHHhhccccccccc
Confidence            4678999999999999988764 459999999999999999998877553 789999997432  1111100        


Q ss_pred             ----CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHH
Q 025059          103 ----ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (258)
Q Consensus       103 ----~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~  156 (258)
                          ..+||+|++.-.-.          .+...+.+.|+++|.++....+...+.+.+
T Consensus       289 ~~~~~~~fD~Vv~dPPr~----------g~~~~~~~~l~~~g~ivyvsc~p~t~ard~  336 (369)
T 3bt7_A          289 IDLKSYQCETIFVDPPRS----------GLDSETEKMVQAYPRILYISCNPETLCKNL  336 (369)
T ss_dssp             SCGGGCCEEEEEECCCTT----------CCCHHHHHHHTTSSEEEEEESCHHHHHHHH
T ss_pred             cccccCCCCEEEECcCcc----------ccHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence                13799998753211          123345556678899888888776554443

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.97  E-value=7.7e-10  Score=94.31  Aligned_cols=98  Identities=15%  Similarity=0.005  Sum_probs=68.8

Q ss_pred             cCCCCEEEEEcCCC------CccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEE-EEcCCCCCchhhhh
Q 025059           29 SHPYVTVCDLYCGA------GVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEF-FEADPCAENFETQM   99 (258)
Q Consensus        29 ~~~~~~VLDlGcG~------G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~   99 (258)
                      ++++.+|||||||+      |.  ..++.. + .++|+|+|+|+. +         .    ++.+ +++|+.+.++    
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------~----~v~~~i~gD~~~~~~----  120 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------S----DADSTLIGDCATVHT----  120 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------C----SSSEEEESCGGGCCC----
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------C----CCEEEEECccccCCc----
Confidence            45889999999955      65  223332 3 369999999998 1         1    5678 9999866443    


Q ss_pred             hhcCCceeEEEecccccc-------ccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          100 QEKANQADLVCCFQHLQM-------CFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~-------~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                         .++||+|++....+.       ..........+++++.++|||||.|++.....
T Consensus       121 ---~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~  174 (290)
T 2xyq_A          121 ---ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  174 (290)
T ss_dssp             ---SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             ---cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence               368999998653221       01112345689999999999999999976443

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.95  E-value=5.6e-09  Score=86.93  Aligned_cols=62  Identities=8%  Similarity=0.024  Sum_probs=53.3

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (258)
                      .++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.++++.....   ++.++++|+.+.++
T Consensus        29 ~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~D~~~~~~   90 (244)
T 1qam_A           29 NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHD---NFQVLNKDILQFKF   90 (244)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCC---SEEEECCCGGGCCC
T ss_pred             CCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccCC---CeEEEEChHHhCCc
Confidence            478899999999999999998877 599999999999999999876432   78999999876554

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.95  E-value=6.5e-09  Score=89.51  Aligned_cols=114  Identities=11%  Similarity=-0.017  Sum_probs=79.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++.+|||+|||+|+.+..++..  +.++|+++|+++.+++.++++++..+.. ++.++++|+......  .. ...+||
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~--~~-~~~~fD  176 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPS--DP-RYHEVH  176 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTT--CG-GGTTEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCcc--cc-ccCCCC
Confidence            47899999999999999988775  4469999999999999999999876543 689999997553321  00 115799


Q ss_pred             EEEecc-----c-cccc----------cCCHH----HHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          108 LVCCFQ-----H-LQMC----------FETEE----RARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       108 ~V~~~~-----~-l~~~----------~~~~~----~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      .|++..     + +...          -....    ....++.++.++|+ ||.++.++..
T Consensus       177 ~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs  236 (309)
T 2b9e_A          177 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS  236 (309)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred             EEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence            998731     1 1100          00111    12457888888887 9998877554

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.90  E-value=3.5e-09  Score=97.90  Aligned_cols=114  Identities=16%  Similarity=0.113  Sum_probs=83.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc----C---------------CCeEEEEecChhHHHHHHHHHHhcCCCc----eeEEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA----L---------------IANYIGIDVATSGIGEARDTWENQRKNF----IAEFFE   87 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~----~---------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~----~~~~~~   87 (258)
                      ++.+|||.|||+|+++..++..    .               ...++|+|+++.++..|+.++..++...    +..+.+
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~  248 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  248 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence            5789999999999998877653    1               1379999999999999998876654431    167889


Q ss_pred             cCCCCCchhhhhhhcCCceeEEEeccccccccC----------CHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059           88 ADPCAENFETQMQEKANQADLVCCFQHLQMCFE----------TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~----------~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +|....+..     ...+||+|+++-.......          .......++..+.+.|+|||.+.+.+|++
T Consensus       249 gDtL~~~~~-----~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          249 GNTLGSDGE-----NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             SCTTSHHHH-----TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             CCCcccccc-----cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence            997543211     3578999999754332111          01122478999999999999999998876

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.83  E-value=2.1e-08  Score=83.91  Aligned_cols=115  Identities=18%  Similarity=0.176  Sum_probs=74.3

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      .++++.+|||||||+|+++..++.. +...+.|+|++-.+.....   .....+.++.....++....+      +.++|
T Consensus        71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi---~~~~~g~~ii~~~~~~dv~~l------~~~~~  141 (277)
T 3evf_A           71 YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPM---NVQSLGWNIITFKDKTDIHRL------EPVKC  141 (277)
T ss_dssp             SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCC---CCCBTTGGGEEEECSCCTTTS------CCCCC
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccc---ccCcCCCCeEEEeccceehhc------CCCCc
Confidence            4568889999999999999987665 4557889998854311100   001011134445665533333      56789


Q ss_pred             eEEEeccccccccCC-HHHHH--HHHHHHHhcccCC-cEEEEEEcC--chHH
Q 025059          107 DLVCCFQHLQMCFET-EERAR--RLLQNVSSLLKPG-GYFLGITPD--SSTI  152 (258)
Q Consensus       107 D~V~~~~~l~~~~~~-~~~~~--~~l~~i~~~Lkpg-G~~i~~~~~--~~~~  152 (258)
                      |+|+|-.+.+ .-.. .+...  .++..+.++|+|| |.|++-+..  +...
T Consensus       142 DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~  192 (277)
T 3evf_A          142 DTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDV  192 (277)
T ss_dssp             SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHH
T ss_pred             cEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccH
Confidence            9999987665 1111 12222  3478889999999 999999888  5443

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.83  E-value=4.9e-08  Score=82.78  Aligned_cols=74  Identities=12%  Similarity=0.161  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCC---CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc
Q 025059           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALI---ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (258)
Q Consensus        18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~   94 (258)
                      +++...+-..-..++.+|||||||+|.++..++....   .+++|+|+++.|++.++++. ..    +++++++|+.+.+
T Consensus        29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~~----~v~~i~~D~~~~~  103 (279)
T 3uzu_A           29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-GE----LLELHAGDALTFD  103 (279)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-GG----GEEEEESCGGGCC
T ss_pred             HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-CC----CcEEEECChhcCC
Confidence            3444333222345789999999999999999988754   23999999999999999884 22    7899999998776


Q ss_pred             hh
Q 025059           95 FE   96 (258)
Q Consensus        95 ~~   96 (258)
                      +.
T Consensus       104 ~~  105 (279)
T 3uzu_A          104 FG  105 (279)
T ss_dssp             GG
T ss_pred             hh
Confidence            63

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.82  E-value=7.4e-09  Score=95.72  Aligned_cols=116  Identities=14%  Similarity=0.007  Sum_probs=80.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--------C--------CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--------L--------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA   92 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--------~--------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~   92 (258)
                      .+...+|||.|||+|+++..+...        .        ...++|+|+++.++..|+.++..++...++.+.++|...
T Consensus       242 ~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~  321 (544)
T 3khk_A          242 EPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFL  321 (544)
T ss_dssp             CCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTT
T ss_pred             hcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhc
Confidence            333349999999999998876432        0        237999999999999999988776554344447777654


Q ss_pred             CchhhhhhhcCCceeEEEeccccccc------------------------cCCH-HHHHHHHHHHHhcccCCcEEEEEEc
Q 025059           93 ENFETQMQEKANQADLVCCFQHLQMC------------------------FETE-ERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus        93 ~~~~~~~~~~~~~fD~V~~~~~l~~~------------------------~~~~-~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      .+..     +..+||+|+++-.....                        .... ..--.++..+.+.|+|||.+.+.+|
T Consensus       322 ~~~~-----~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP  396 (544)
T 3khk_A          322 DDQH-----PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLA  396 (544)
T ss_dssp             SCSC-----TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             Cccc-----ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEec
Confidence            3321     35789999996432210                        0001 1112689999999999999999988


Q ss_pred             Cc
Q 025059          148 DS  149 (258)
Q Consensus       148 ~~  149 (258)
                      ++
T Consensus       397 ~g  398 (544)
T 3khk_A          397 NG  398 (544)
T ss_dssp             TH
T ss_pred             ch
Confidence            75

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.82  E-value=2.1e-08  Score=95.40  Aligned_cols=125  Identities=14%  Similarity=0.052  Sum_probs=85.3

Q ss_pred             HHHHHH-hcCCCCEEEEEcCCCCccHHHHHHcC-------------------------------------------CCeE
Q 025059           22 TALIKI-YSHPYVTVCDLYCGAGVDVDKWETAL-------------------------------------------IANY   57 (258)
Q Consensus        22 ~~li~~-~~~~~~~VLDlGcG~G~~~~~~~~~~-------------------------------------------~~~v   57 (258)
                      ..++.. ..+++..|||.+||+|.++...+...                                           ...+
T Consensus       180 a~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i  259 (703)
T 3v97_A          180 AAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHF  259 (703)
T ss_dssp             HHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_pred             HHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccE
Confidence            334433 34578899999999999987766431                                           1379


Q ss_pred             EEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHH---HHHHHHh
Q 025059           58 IGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARR---LLQNVSS  134 (258)
Q Consensus        58 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~---~l~~i~~  134 (258)
                      +|+|+++.|++.|+.++...+....+.|.++|+.+...    +...++||+|+++-....-+...+.+..   .+.++.+
T Consensus       260 ~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~----~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk  335 (703)
T 3v97_A          260 YGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTN----PLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK  335 (703)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCC----SCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcc----ccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHH
Confidence            99999999999999999887766568999999865321    0012389999998332211122333434   4445555


Q ss_pred             cccCCcEEEEEEcCch
Q 025059          135 LLKPGGYFLGITPDSS  150 (258)
Q Consensus       135 ~LkpgG~~i~~~~~~~  150 (258)
                      .+.|||.+.+.+++..
T Consensus       336 ~~~~g~~~~ilt~~~~  351 (703)
T 3v97_A          336 NQFGGWNLSLFSASPD  351 (703)
T ss_dssp             HHCTTCEEEEEESCHH
T ss_pred             hhCCCCeEEEEeCCHH
Confidence            5668999999877754

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.81  E-value=4.2e-09  Score=88.43  Aligned_cols=83  Identities=16%  Similarity=0.073  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecCh-------hHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVAT-------SGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~-------~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (258)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+       .+++.|+++.+.++...+++++++|+.+  +.+.+++..
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~--~l~~~~~~~  159 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAE--QMPALVKTQ  159 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHH--HHHHHHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHH--HHHhhhccC
Confidence            568999999999999999988754 899999999       9999998766543322258999999743  111121111


Q ss_pred             CceeEEEeccccc
Q 025059          104 NQADLVCCFQHLQ  116 (258)
Q Consensus       104 ~~fD~V~~~~~l~  116 (258)
                      ++||+|++.-..+
T Consensus       160 ~~fD~V~~dP~~~  172 (258)
T 2r6z_A          160 GKPDIVYLDPMYP  172 (258)
T ss_dssp             CCCSEEEECCCC-
T ss_pred             CCccEEEECCCCC
Confidence            6899999865433

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.78  E-value=6.6e-08  Score=89.25  Aligned_cols=116  Identities=17%  Similarity=0.090  Sum_probs=84.7

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc----CCCeEEEEecChhHHHHHHHHHHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      ++.+|||.|||+|+++..+...    +...++|+|+++.++..|+.++..++.. .++.+.++|....... .  ....+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p-~--~~~~~  297 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWP-T--QEPTN  297 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSC-C--SSCCC
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccc-c--ccccc
Confidence            6789999999999999888765    2458999999999999999887766543 2578999998654210 0  04578


Q ss_pred             eeEEEecccccccc------------------CCHH-HHHHHHHHHHhccc-CCcEEEEEEcCc
Q 025059          106 ADLVCCFQHLQMCF------------------ETEE-RARRLLQNVSSLLK-PGGYFLGITPDS  149 (258)
Q Consensus       106 fD~V~~~~~l~~~~------------------~~~~-~~~~~l~~i~~~Lk-pgG~~i~~~~~~  149 (258)
                      ||+|+++-......                  .+.. .--.++..+.+.|+ |||++.+.+|++
T Consensus       298 fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          298 FDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             BSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             ccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            99999873221100                  0000 01258999999999 999999998886

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.76  E-value=1.7e-08  Score=86.59  Aligned_cols=81  Identities=14%  Similarity=0.069  Sum_probs=63.0

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~f  106 (258)
                      ..++.+|||+|||+|+.+..++... ..+++|+|+|+.|++.|+++....+  .++.++++|+.+.+  ..+.. ...+|
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~--~~l~~~g~~~~   99 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREAD--FLLKTLGIEKV   99 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHH--HHHHHTTCSCE
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHH--HHHHhcCCCCC
Confidence            3578899999999999999998873 4699999999999999999987654  27999999975532  11111 12589


Q ss_pred             eEEEecc
Q 025059          107 DLVCCFQ  113 (258)
Q Consensus       107 D~V~~~~  113 (258)
                      |.|++..
T Consensus       100 D~Vl~D~  106 (301)
T 1m6y_A          100 DGILMDL  106 (301)
T ss_dssp             EEEEEEC
T ss_pred             CEEEEcC
Confidence            9998754

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.76  E-value=3.1e-08  Score=82.70  Aligned_cols=62  Identities=13%  Similarity=0.061  Sum_probs=53.2

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (258)
                      ..++.+|||||||+|.++..++..+..+++|+|+++.+++.++++ ..    .+++++++|+...++
T Consensus        29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~~----~~v~~i~~D~~~~~~   90 (249)
T 3ftd_A           29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-GD----ERLEVINEDASKFPF   90 (249)
T ss_dssp             CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-CC----TTEEEECSCTTTCCG
T ss_pred             CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-cC----CCeEEEEcchhhCCh
Confidence            447889999999999999999887656999999999999999877 21    278999999988766

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.75  E-value=1.8e-08  Score=94.03  Aligned_cols=102  Identities=15%  Similarity=0.101  Sum_probs=75.6

Q ss_pred             CCEEEEEcCCCCccHHHHHHc---CCC--eEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           32 YVTVCDLYCGAGVDVDKWETA---LIA--NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~---~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      +..|||+|||+|.++...++.   ...  +|++++.|+ +...|++....++++.+++++++|+.+..+       +++.
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~L-------PEKV  429 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVA-------PEKA  429 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCC-------SSCE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccC-------Cccc
Confidence            357999999999885444333   322  689999997 455677777777777799999999988765       5799


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      |+|++-. +.+.+..+. ....+....+.|||||+++
T Consensus       430 DIIVSEw-MG~fLl~E~-mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          430 DIIVSEL-LGSFADNEL-SPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EEEECCC-CBTTBGGGC-HHHHHHHHGGGEEEEEEEE
T ss_pred             CEEEEEc-CcccccccC-CHHHHHHHHHhcCCCcEEc
Confidence            9998854 333333333 3367888899999999874

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.73  E-value=2.9e-07  Score=81.04  Aligned_cols=114  Identities=14%  Similarity=0.100  Sum_probs=73.7

Q ss_pred             CCEEEEEcCCCCccHHHHHHc----------------CCCeEEEEecChhHHHHHHHHHHhcCC-----------CceeE
Q 025059           32 YVTVCDLYCGAGVDVDKWETA----------------LIANYIGIDVATSGIGEARDTWENQRK-----------NFIAE   84 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~----------------~~~~v~gvD~s~~~l~~a~~~~~~~~~-----------~~~~~   84 (258)
                      ..+|+|+|||+|.++..+...                +.-++...|+..+.....-+.++....           ..+..
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            578999999999998877221                112677888877776655444443210           00112


Q ss_pred             EEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCH----------------------------------HHHHHHHH
Q 025059           85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETE----------------------------------ERARRLLQ  130 (258)
Q Consensus        85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~----------------------------------~~~~~~l~  130 (258)
                      |+.+...+  +...+. +++++|+|.++.++||+-...                                  .+...+|+
T Consensus       133 f~~gvpgS--Fy~rlf-P~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~  209 (374)
T 3b5i_A          133 FVAGVPGS--FYRRLF-PARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLR  209 (374)
T ss_dssp             EEEEEESC--TTSCCS-CTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChh--hhcccC-CCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            22222211  111110 689999999999999953211                                  26677899


Q ss_pred             HHHhcccCCcEEEEEEcC
Q 025059          131 NVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       131 ~i~~~LkpgG~~i~~~~~  148 (258)
                      ..++.|+|||.+++++..
T Consensus       210 ~ra~eL~pGG~mvl~~~g  227 (374)
T 3b5i_A          210 ARAAEVKRGGAMFLVCLG  227 (374)
T ss_dssp             HHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHhCCCCEEEEEEec
Confidence            999999999999999654

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.73  E-value=7.9e-08  Score=80.33  Aligned_cols=78  Identities=9%  Similarity=-0.079  Sum_probs=57.2

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCe--EEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIAN--YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~--v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..++.+|||||||+|.++. +.. . .+  ++|+|+++.|++.++++.....   +++++++|+...++...... .+..
T Consensus        19 ~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~~---~v~~i~~D~~~~~~~~~~~~-~~~~   91 (252)
T 1qyr_A           19 PQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLGP---KLTIYQQDAMTFNFGELAEK-MGQP   91 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTGG---GEEEECSCGGGCCHHHHHHH-HTSC
T ss_pred             CCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccCC---ceEEEECchhhCCHHHhhcc-cCCc
Confidence            4578899999999999999 654 3 36  9999999999999998775432   78999999977665322100 1234


Q ss_pred             eEEEecc
Q 025059          107 DLVCCFQ  113 (258)
Q Consensus       107 D~V~~~~  113 (258)
                      |.|+++.
T Consensus        92 ~~vvsNl   98 (252)
T 1qyr_A           92 LRVFGNL   98 (252)
T ss_dssp             EEEEEEC
T ss_pred             eEEEECC
Confidence            6666654

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.70  E-value=3.3e-08  Score=82.81  Aligned_cols=115  Identities=18%  Similarity=0.148  Sum_probs=73.6

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ++.++.+|||||||+|++++.++.. +...++|+|++..+...+..   ....+.++.....++....+      +..++
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~---~~~~g~~ii~~~~~~dv~~l------~~~~~  157 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM---RTTLGWNLIRFKDKTDVFNM------EVIPG  157 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC---CCBTTGGGEEEECSCCGGGS------CCCCC
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc---cccCCCceEEeeCCcchhhc------CCCCc
Confidence            4568889999999999999987754 55679999998764322211   00011233333433321122      56899


Q ss_pred             eEEEeccccccccC-CHHHHH--HHHHHHHhcccCC--cEEEEEEcC--chHH
Q 025059          107 DLVCCFQHLQMCFE-TEERAR--RLLQNVSSLLKPG--GYFLGITPD--SSTI  152 (258)
Q Consensus       107 D~V~~~~~l~~~~~-~~~~~~--~~l~~i~~~Lkpg--G~~i~~~~~--~~~~  152 (258)
                      |+|+|-.+.. .=. ..++..  .++.-+..+|+||  |.|++-+..  +...
T Consensus       158 DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~  209 (282)
T 3gcz_A          158 DTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLI  209 (282)
T ss_dssp             SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHH
T ss_pred             CEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccH
Confidence            9999987665 111 122222  3577788999999  999999888  5443

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.67  E-value=3.2e-07  Score=73.87  Aligned_cols=104  Identities=5%  Similarity=-0.132  Sum_probs=73.2

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCC--CceeEEEEcCCCCCc-------------h
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAEN-------------F   95 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~~~-------------~   95 (258)
                      +..+|||+|||  ..+..+++...++|+.+|.+++..+.|++.++..+.  ..+++++.+|+....             +
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            46799999985  444555443346999999999999999999988765  558999999975421             1


Q ss_pred             h---hhhhh--cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           96 E---TQMQE--KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        96 ~---~~~~~--~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .   ..+..  ..++||+|++-...         ....+..+.+.|+|||++++.
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~k---------~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGRF---------RVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSSS---------HHHHHHHHHHHCSSCEEEEET
T ss_pred             HHHhhhhhccccCCCCCEEEEeCCC---------chhHHHHHHHhcCCCeEEEEe
Confidence            1   00001  23789999876521         125556677999999999764

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.66  E-value=2.2e-08  Score=89.16  Aligned_cols=78  Identities=17%  Similarity=0.056  Sum_probs=61.5

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc--CCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--RKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++.+..  +. .++.++++|+.+. + +..  ..++||
T Consensus        92 ~~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~-L-~~~--~~~~fD  165 (410)
T 3ll7_A           92 REGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEY-L-PLI--KTFHPD  165 (410)
T ss_dssp             CTTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGS-H-HHH--HHHCCS
T ss_pred             CCCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHh-h-hhc--cCCCce
Confidence            3589999999999999988877654 9999999999999999998865  43 3799999998542 1 111  235899


Q ss_pred             EEEecc
Q 025059          108 LVCCFQ  113 (258)
Q Consensus       108 ~V~~~~  113 (258)
                      +|++.-
T Consensus       166 vV~lDP  171 (410)
T 3ll7_A          166 YIYVDP  171 (410)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            998853

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.64  E-value=2.9e-07  Score=87.43  Aligned_cols=116  Identities=14%  Similarity=0.066  Sum_probs=76.8

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC----CCeEEEEecChhHHHHHHHHHHhc--C--CCce-eEEEEcCCCCCchhhhhh
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL----IANYIGIDVATSGIGEARDTWENQ--R--KNFI-AEFFEADPCAENFETQMQ  100 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~----~~~v~gvD~s~~~l~~a~~~~~~~--~--~~~~-~~~~~~d~~~~~~~~~~~  100 (258)
                      +++.+|||.|||+|.++..++...    ..+++|+|+++.+++.|+.+....  .  .+.. ..+...|+.....     
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~-----  394 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNP-----  394 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCG-----
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccc-----
Confidence            357899999999999999887653    247999999999999995443221  1  1111 2444444432111     


Q ss_pred             hcCCceeEEEeccccccccCCHH-------------------------HHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          101 EKANQADLVCCFQHLQMCFETEE-------------------------RARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~-------------------------~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      ....+||+|+++-..........                         ....++..+.+.|+|||.+.+.+|++-
T Consensus       395 ~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~  469 (878)
T 3s1s_A          395 EDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY  469 (878)
T ss_dssp             GGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH
T ss_pred             cccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHH
Confidence            13578999999753311011111                         133578889999999999999999873

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.60  E-value=4.4e-07  Score=80.04  Aligned_cols=112  Identities=14%  Similarity=0.053  Sum_probs=71.8

Q ss_pred             CCEEEEEcCCCCccHHHHHHc-----------------CC-CeEEEEecC-----------hhHHHHHHHHHHhcCCCce
Q 025059           32 YVTVCDLYCGAGVDVDKWETA-----------------LI-ANYIGIDVA-----------TSGIGEARDTWENQRKNFI   82 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~-----------------~~-~~v~gvD~s-----------~~~l~~a~~~~~~~~~~~~   82 (258)
                      ..+|+|+||++|.++..+...                 .+ -++...|+.           +.+.+.+++.   .+...+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCCCC
Confidence            578999999999998877553                 01 267778877           3333322221   111123


Q ss_pred             eEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCH-----------------------------------HHHHH
Q 025059           83 AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETE-----------------------------------ERARR  127 (258)
Q Consensus        83 ~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~-----------------------------------~~~~~  127 (258)
                      ..|+.+...+  +...+. +.+++|+|.++.++||+-...                                   .+...
T Consensus       130 ~~f~~gvpgS--Fy~rlf-p~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~  206 (384)
T 2efj_A          130 SCLIGAMPGS--FYSRLF-PEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTT  206 (384)
T ss_dssp             SEEEEECCSC--TTSCCS-CTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchh--hhhccC-CCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHH
Confidence            4566665432  211111 689999999999999953221                                   13345


Q ss_pred             HHHHHHhcccCCcEEEEEEcCc
Q 025059          128 LLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       128 ~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +|+..++.|+|||.+++++...
T Consensus       207 FL~~Ra~eL~pGG~mvl~~~gr  228 (384)
T 2efj_A          207 FLRIHSEELISRGRMLLTFICK  228 (384)
T ss_dssp             HHHHHHHHEEEEEEEEEEEECC
T ss_pred             HHHHHHHHhccCCeEEEEEecC
Confidence            5888899999999999996643

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.60  E-value=4.5e-07  Score=79.48  Aligned_cols=128  Identities=13%  Similarity=0.002  Sum_probs=86.0

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc-------CCCceeEEEEcCCCCCchhhhhhhc
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      +++.+||=||.|.|+.+..+++.+..+++.+||++.+++.|++.++..       ....+++++.+|+..  +.......
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~--fl~~~~~~  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP--VLKRYAKE  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH--HHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH--HHHhhhhc
Confidence            466899999999999999998887789999999999999999876431       111247888888632  22222224


Q ss_pred             CCceeEEEecccccc-c-----cCCHHHHHHHHHHHHhcccCCcEEEEE--EcCchHHHHHHHHh
Q 025059          103 ANQADLVCCFQHLQM-C-----FETEERARRLLQNVSSLLKPGGYFLGI--TPDSSTIWAKYQKN  159 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~-~-----~~~~~~~~~~l~~i~~~LkpgG~~i~~--~~~~~~~~~~~~~~  159 (258)
                      .++||+|+.-..-.. .     .....-.+.+++.+.++|+|||+++..  .|........+.+.
T Consensus       282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~t  346 (381)
T 3c6k_A          282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQ  346 (381)
T ss_dssp             TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHH
T ss_pred             cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHH
Confidence            578999986421100 0     001223467899999999999999876  34433333344433

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.58  E-value=1.1e-07  Score=89.03  Aligned_cols=108  Identities=15%  Similarity=0.025  Sum_probs=73.4

Q ss_pred             CCEEEEEcCCCCccHHHHHHc----C----------CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh
Q 025059           32 YVTVCDLYCGAGVDVDKWETA----L----------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~----~----------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   97 (258)
                      +..|||+|||+|.++...+..    +          ..+|+++|.|+.++..++.+.. ++++.+++++.+|+.+..+-.
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            468999999999986432111    1          2389999999988876665554 555558999999997644300


Q ss_pred             hhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      . .+..++.|+|++-.. .+... .+-....+..+.+.|+|||++|
T Consensus       489 ~-~~~~ekVDIIVSElm-Gsfl~-nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          489 K-DRGFEQPDIIVSELL-GSFGD-NELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             H-HTTCCCCSEEEECCC-BTTBG-GGSHHHHHHTTGGGSCTTCEEE
T ss_pred             c-cCCCCcccEEEEecc-ccccc-hhccHHHHHHHHHhCCCCcEEE
Confidence            0 012679999998653 33222 2334567777889999999864

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.54  E-value=2.5e-07  Score=78.64  Aligned_cols=114  Identities=11%  Similarity=0.070  Sum_probs=82.6

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc----CCCceeEEEEcCCCCCchhhhhhhcC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ----RKNFIAEFFEADPCAENFETQMQEKA  103 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (258)
                      .+...+||=||.|.|+.+..+++. +..+++.+||++.+++.|++.++..    -...+++++.+|...-     +....
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~-----l~~~~  155 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNF-----VNQTS  155 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTT-----TSCSS
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHH-----Hhhcc
Confidence            345689999999999999999887 4579999999999999999877531    1133799999998652     12256


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ++||+|++-..=.......---..+++.++++|+|||+++....
T Consensus       156 ~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~  199 (294)
T 3o4f_A          156 QTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG  199 (294)
T ss_dssp             CCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence            79999987431110000000125789999999999999998743

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.52  E-value=3e-07  Score=80.45  Aligned_cols=110  Identities=15%  Similarity=0.097  Sum_probs=78.9

Q ss_pred             CCEEEEEcCCCCccHHHHHHc---------------CC--CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC--
Q 025059           32 YVTVCDLYCGAGVDVDKWETA---------------LI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--   92 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~---------------~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--   92 (258)
                      ..+|+|+||++|.++..+...               ..  -++...|+..+....+.+.++......+..|+.+...+  
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            467999999999888765433               11  27889999999998887776542110023454443322  


Q ss_pred             -CchhhhhhhcCCceeEEEeccccccccCC-----------------------------HHHHHHHHHHHHhcccCCcEE
Q 025059           93 -ENFETQMQEKANQADLVCCFQHLQMCFET-----------------------------EERARRLLQNVSSLLKPGGYF  142 (258)
Q Consensus        93 -~~~~~~~~~~~~~fD~V~~~~~l~~~~~~-----------------------------~~~~~~~l~~i~~~LkpgG~~  142 (258)
                       ..+      +.+++|+|.++.++||+-..                             ..+...+|+..++.|+|||.+
T Consensus       132 ~rlf------p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~m  205 (359)
T 1m6e_X          132 GRLF------PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRM  205 (359)
T ss_dssp             SCCS------CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEE
T ss_pred             hccC------CCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence             223      68999999999999995321                             246778899999999999999


Q ss_pred             EEEEc
Q 025059          143 LGITP  147 (258)
Q Consensus       143 i~~~~  147 (258)
                      ++++.
T Consensus       206 vl~~~  210 (359)
T 1m6e_X          206 VLTIL  210 (359)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99955

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.43  E-value=6.4e-07  Score=75.52  Aligned_cols=117  Identities=15%  Similarity=0.088  Sum_probs=72.7

Q ss_pred             HhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           27 IYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      .+++++.+||||||++|+++..++.. +...++|+|+...+...... .  ...+.++.....++.-..+      ..+.
T Consensus        77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~--~~~~~~iv~~~~~~di~~l------~~~~  147 (300)
T 3eld_A           77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-M--QTLGWNIVKFKDKSNVFTM------PTEP  147 (300)
T ss_dssp             TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-C--CBTTGGGEEEECSCCTTTS------CCCC
T ss_pred             CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-c--cccCCceEEeecCceeeec------CCCC
Confidence            35668999999999999999999875 55579999997643211000 0  0001122222322221122      4578


Q ss_pred             eeEEEeccccccccC-CHHHH--HHHHHHHHhcccCC-cEEEEEEcC--chHHH
Q 025059          106 ADLVCCFQHLQMCFE-TEERA--RRLLQNVSSLLKPG-GYFLGITPD--SSTIW  153 (258)
Q Consensus       106 fD~V~~~~~l~~~~~-~~~~~--~~~l~~i~~~Lkpg-G~~i~~~~~--~~~~~  153 (258)
                      +|+|+|-.+.. .=. ..+..  ..++.-+..+|+|| |.|++-+..  +....
T Consensus       148 ~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~  200 (300)
T 3eld_A          148 SDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVI  200 (300)
T ss_dssp             CSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHH
T ss_pred             cCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHH
Confidence            99999977655 111 11111  33477788999999 999999888  65433

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.34  E-value=5.2e-07  Score=68.24  Aligned_cols=88  Identities=17%  Similarity=0.156  Sum_probs=60.8

Q ss_pred             HhcCCCCEEEEEcCCCC-ccHHHHHH-cCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           27 IYSHPYVTVCDLYCGAG-VDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        27 ~~~~~~~~VLDlGcG~G-~~~~~~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      +...++.+|||+|||+| ..+..++. .+. .|+++|+++.+++                +++.|+++..+.     .-.
T Consensus        31 ~~~~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~----------------~v~dDiF~P~~~-----~Y~   88 (153)
T 2k4m_A           31 RCSGPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG----------------IVRDDITSPRME-----IYR   88 (153)
T ss_dssp             HHSCSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT----------------EECCCSSSCCHH-----HHT
T ss_pred             hcCCCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc----------------eEEccCCCCccc-----ccC
Confidence            33355689999999999 58888876 565 8999999988866                788998775441     114


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .||+|.+.-       ...++...+.++++.+  |.-+++.
T Consensus        89 ~~DLIYsir-------PP~El~~~i~~lA~~v--~adliI~  120 (153)
T 2k4m_A           89 GAALIYSIR-------PPAEIHSSLMRVADAV--GARLIIK  120 (153)
T ss_dssp             TEEEEEEES-------CCTTTHHHHHHHHHHH--TCEEEEE
T ss_pred             CcCEEEEcC-------CCHHHHHHHHHHHHHc--CCCEEEE
Confidence            899996543       3344555555555543  4556665

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.29  E-value=3.8e-06  Score=73.52  Aligned_cols=115  Identities=17%  Similarity=0.014  Sum_probs=80.6

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCC-----CceeEEEEcCCCCCchhhhhhhc
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRK-----NFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      .+||.+|||+|+|.|+=+..++.... +.++++|+++.-+...++++...+.     ..++.+...|....+-   .  .
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~---~--~  220 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE---L--E  220 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH---H--S
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch---h--c
Confidence            34889999999999998888877643 4799999999999988888765421     2357778887643211   1  3


Q ss_pred             CCceeEEEeccccc----ccc---------CCH-------HHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          103 ANQADLVCCFQHLQ----MCF---------ETE-------ERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       103 ~~~fD~V~~~~~l~----~~~---------~~~-------~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      .+.||.|++-....    ...         .+.       .-..++|.+..++|||||.++-++++
T Consensus       221 ~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS  286 (359)
T 4fzv_A          221 GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS  286 (359)
T ss_dssp             TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred             cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence            57899998632110    000         011       12357889999999999999888655

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.26  E-value=3.9e-06  Score=70.58  Aligned_cols=76  Identities=11%  Similarity=0.045  Sum_probs=59.8

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD  107 (258)
                      ..++..+||.+||.|+++..++.. .++|+|+|.++.+++.|++ +..    .++.++++|..+  +...+.. ..+++|
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~--l~~~L~~~g~~~vD   91 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRH--LKRHLAALGVERVD   91 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGG--HHHHHHHTTCSCEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcch--HHHHHHHcCCCCcC
Confidence            457899999999999999999988 4599999999999999998 654    279999999755  3222221 225799


Q ss_pred             EEEec
Q 025059          108 LVCCF  112 (258)
Q Consensus       108 ~V~~~  112 (258)
                      .|++.
T Consensus        92 gIL~D   96 (285)
T 1wg8_A           92 GILAD   96 (285)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            99763

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.24  E-value=5e-06  Score=76.63  Aligned_cols=116  Identities=15%  Similarity=0.050  Sum_probs=79.2

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--------------CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--------------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (258)
                      ++.+|+|.+||+|+++......              ....++|+|+++.+...|+-++--++.. ...+.++|....+..
T Consensus       217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-~~~I~~~dtL~~~~~  295 (530)
T 3ufb_A          217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-YPRIDPENSLRFPLR  295 (530)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-CCEEECSCTTCSCGG
T ss_pred             CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-cccccccccccCchh
Confidence            5779999999999998776542              1236999999999999998877655432 346778887654432


Q ss_pred             hhhhhcCCceeEEEeccccccc------------cCCHHHHHHHHHHHHhccc-------CCcEEEEEEcCc
Q 025059           97 TQMQEKANQADLVCCFQHLQMC------------FETEERARRLLQNVSSLLK-------PGGYFLGITPDS  149 (258)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~------------~~~~~~~~~~l~~i~~~Lk-------pgG~~i~~~~~~  149 (258)
                      ...  ...+||+|+++-.....            ..+......++..+.+.|+       |||.+.+.+|++
T Consensus       296 ~~~--~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g  365 (530)
T 3ufb_A          296 EMG--DKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNG  365 (530)
T ss_dssp             GCC--GGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHH
T ss_pred             hhc--ccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecch
Confidence            211  24589999997543210            1111223456777777776       799999998875

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.20  E-value=9.5e-07  Score=72.93  Aligned_cols=110  Identities=22%  Similarity=0.177  Sum_probs=66.2

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCc-eeEEEEc-CCCCCchhhhhhhcCC
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEA-DPCAENFETQMQEKAN  104 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~-d~~~~~~~~~~~~~~~  104 (258)
                      +++|+.+||||||+.|++++..+.. +.+.+.|.++.... ..  ........+. -+.|.++ |+.+  +      ...
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~--~P~~~~~~Gv~~i~~~~G~Df~~--~------~~~  138 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HE--EPMLMQSYGWNIVTMKSGVDVFY--K------PSE  138 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SC--CCCCCCSTTGGGEEEECSCCGGG--S------CCC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-cc--CCCcccCCCceEEEeeccCCccC--C------CCC
Confidence            6789999999999999999988775 23344555554331 00  0000000111 1245556 8754  2      346


Q ss_pred             ceeEEEeccccc---cccCCHHHHHHHHHHHHhcccCCc-EEEEEEcCc
Q 025059          105 QADLVCCFQHLQ---MCFETEERARRLLQNVSSLLKPGG-YFLGITPDS  149 (258)
Q Consensus       105 ~fD~V~~~~~l~---~~~~~~~~~~~~l~~i~~~LkpgG-~~i~~~~~~  149 (258)
                      ++|+|+|-.+-.   ...++...+. ++.-+.+.|+||| .|++=+..+
T Consensus       139 ~~DvVLSDMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~FvvKVFqg  186 (269)
T 2px2_A          139 ISDTLLCDIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCIKILCP  186 (269)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEEEESCT
T ss_pred             CCCEEEeCCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEEEEEECCC
Confidence            899999976543   1111112223 6777779999999 888876665

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.19  E-value=1.9e-06  Score=72.08  Aligned_cols=81  Identities=11%  Similarity=-0.043  Sum_probs=57.1

Q ss_pred             CCC--CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc-------C-CCceeEEEEcCCCCCchhhhh
Q 025059           30 HPY--VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------R-KNFIAEFFEADPCAENFETQM   99 (258)
Q Consensus        30 ~~~--~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-------~-~~~~~~~~~~d~~~~~~~~~~   99 (258)
                      .++  .+|||++||+|.++..++..+. +|+++|+++.+.+.+++.++..       + ...+++++++|+.+  +.+. 
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~--~L~~-  160 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT--ALTD-  160 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH--HSTT-
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH--HHHh-
Confidence            356  8999999999999999988765 8999999998766655543211       0 11268999999743  1111 


Q ss_pred             hhcCCceeEEEeccccc
Q 025059          100 QEKANQADLVCCFQHLQ  116 (258)
Q Consensus       100 ~~~~~~fD~V~~~~~l~  116 (258)
                        ...+||+|++.-..+
T Consensus       161 --~~~~fDvV~lDP~y~  175 (258)
T 2oyr_A          161 --ITPRPQVVYLDPMFP  175 (258)
T ss_dssp             --CSSCCSEEEECCCCC
T ss_pred             --CcccCCEEEEcCCCC
Confidence              124799998865444

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.18  E-value=1.9e-05  Score=68.93  Aligned_cols=97  Identities=7%  Similarity=-0.090  Sum_probs=66.5

Q ss_pred             HhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..+.+|.+||||||++|+++..+...+. +|++||+.+-. .    .+...+   ++.++++|......      +...+
T Consensus       207 ~~l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~-~----~l~~~~---~V~~~~~d~~~~~~------~~~~~  271 (375)
T 4auk_A          207 ERLANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMA-Q----SLMDTG---QVTWLREDGFKFRP------TRSNI  271 (375)
T ss_dssp             HHSCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCC-H----HHHTTT---CEEEECSCTTTCCC------CSSCE
T ss_pred             ccCCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcC-h----hhccCC---CeEEEeCccccccC------CCCCc
Confidence            3466899999999999999999988775 99999987532 1    122222   78999999876544      45789


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      |+|+|-.+..     .......+.........++.++
T Consensus       272 D~vvsDm~~~-----p~~~~~l~~~wl~~~~~~~aI~  303 (375)
T 4auk_A          272 SWMVCDMVEK-----PAKVAALMAQWLVNGWCRETIF  303 (375)
T ss_dssp             EEEEECCSSC-----HHHHHHHHHHHHHTTSCSEEEE
T ss_pred             CEEEEcCCCC-----hHHhHHHHHHHHhccccceEEE
Confidence            9999976432     4444445544444444445433

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.15  E-value=5.4e-05  Score=63.99  Aligned_cols=106  Identities=12%  Similarity=-0.028  Sum_probs=77.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc------CCCeEEEEecCh--------------------------hHHHHHHHHHHhcC
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA------LIANYIGIDVAT--------------------------SGIGEARDTWENQR   78 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~------~~~~v~gvD~s~--------------------------~~l~~a~~~~~~~~   78 (258)
                      ....|||+|+..|..+..++..      ...+++++|..+                          ..++.++++++..+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            3569999999999988776543      246899999642                          14677888888766


Q ss_pred             C-CceeEEEEcCCCCCchhhhhhh-cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059           79 K-NFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus        79 ~-~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      . ..+++++.+|+.+     .++. +.++||+|.+-...      -+.....++.+...|+|||++++.-.
T Consensus       186 l~~~~I~li~Gda~e-----tL~~~~~~~~d~vfIDaD~------y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKD-----TLPTAPIDTLAVLRMDGDL------YESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             CCSTTEEEEESCHHH-----HSTTCCCCCEEEEEECCCS------HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             CCcCceEEEEeCHHH-----HHhhCCCCCEEEEEEcCCc------cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            5 2489999999632     1211 35789999776532      23456789999999999999988744

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.13  E-value=1.6e-05  Score=66.37  Aligned_cols=121  Identities=14%  Similarity=0.164  Sum_probs=71.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-------CC------CeEEEEecCh---hHHH-----------HHHHHHHhc------
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-------LI------ANYIGIDVAT---SGIG-----------EARDTWENQ------   77 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-------~~------~~v~gvD~s~---~~l~-----------~a~~~~~~~------   77 (258)
                      ++.+|||+|+|+|..+..+...       .+      .+++++|..+   +++.           .|++.....      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4579999999999887665432       22      3899999876   4444           444444321      


Q ss_pred             -------CCCceeEEEEcCCCCCchhhhhhh-cCCceeEEEec-cccccccCCHH-HHHHHHHHHHhcccCCcEEEEEEc
Q 025059           78 -------RKNFIAEFFEADPCAENFETQMQE-KANQADLVCCF-QHLQMCFETEE-RARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus        78 -------~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~-~~l~~~~~~~~-~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                             ....+++++.+|+.+.  .+.+.. ....||+|..- ++...   +.+ -...++..+.++|+|||+++.-+ 
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~--l~~~~~~~~~~~D~iflD~fsp~~---~p~lw~~~~l~~l~~~L~pGG~l~tys-  213 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINEL--ISQLDDSLNQKVDAWFLDGFAPAK---NPDMWTQNLFNAMARLARPGGTLATFT-  213 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHH--GGGSCGGGTTCEEEEEECSSCTTT---CGGGCCHHHHHHHHHHEEEEEEEEESC-
T ss_pred             hhheeccCCceEEEEEECcHHHH--HhhcccccCCeEEEEEECCCCccc---ChhhcCHHHHHHHHHHcCCCcEEEEEe-
Confidence                   1113577888886431  111100 01379999773 22210   111 13578999999999999987433 


Q ss_pred             CchHHHHHHH
Q 025059          148 DSSTIWAKYQ  157 (258)
Q Consensus       148 ~~~~~~~~~~  157 (258)
                      ....+.+.+.
T Consensus       214 aa~~vrr~L~  223 (257)
T 2qy6_A          214 SAGFVRRGLQ  223 (257)
T ss_dssp             CBHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            3344444444

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.05  E-value=1.5e-05  Score=68.02  Aligned_cols=55  Identities=15%  Similarity=0.225  Sum_probs=47.1

Q ss_pred             HHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc
Q 025059           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (258)
Q Consensus        22 ~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~   77 (258)
                      ..+|..+..++..|||++||+|..+..+...+. +++|+|+++.+++.|++++...
T Consensus       226 ~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          226 ERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            345556667899999999999999988877765 9999999999999999998764

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.91  E-value=8.7e-05  Score=62.37  Aligned_cols=117  Identities=21%  Similarity=0.201  Sum_probs=73.7

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEc-CCCCCchhhhhhhcCCc
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEKANQ  105 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~  105 (258)
                      ++.++.+||||||++|+++...+.. +...|+|+|+...-.+.-+ ..+..++. .+.+.+. |+...+        ...
T Consensus        91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~-lV~~~~~~Dv~~l~--------~~~  160 (321)
T 3lkz_A           91 FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWN-IVTMKSGVDVFYRP--------SEC  160 (321)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGG-GEEEECSCCTTSSC--------CCC
T ss_pred             CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCc-ceEEEeccCHhhCC--------CCC
Confidence            4568889999999999999977665 5568999999765211000 00011111 3677777 764432        367


Q ss_pred             eeEEEeccccccccCCH--H--HHHHHHHHHHhcccCC-cEEEEEEcCc--hHHHHHH
Q 025059          106 ADLVCCFQHLQMCFETE--E--RARRLLQNVSSLLKPG-GYFLGITPDS--STIWAKY  156 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~--~--~~~~~l~~i~~~Lkpg-G~~i~~~~~~--~~~~~~~  156 (258)
                      +|+|+|-.+ . +-.+.  +  ....+|+-+.+.|++| |.|.+-+..+  +.+.+.+
T Consensus       161 ~D~ivcDig-e-Ss~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l  216 (321)
T 3lkz_A          161 CDTLLCDIG-E-SSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKM  216 (321)
T ss_dssp             CSEEEECCC-C-CCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHH
T ss_pred             CCEEEEECc-c-CCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHH
Confidence            999998665 2 11221  1  1123677778889998 8888877766  5554433

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.80  E-value=2.5e-05  Score=63.64  Aligned_cols=116  Identities=21%  Similarity=0.165  Sum_probs=73.4

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEc-CCCCCchhhhhhhcCCc
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEKANQ  105 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~  105 (258)
                      .+.++.+||||||++|+++...+.. +...|+|+|+-..-.+.-+ ..+..++. .++|.++ |+...        +..+
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn-~v~fk~gvDv~~~--------~~~~  144 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWN-IVKLMSGKDVFYL--------PPEK  144 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTT-SEEEECSCCGGGC--------CCCC
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcC-ceEEEeccceeec--------CCcc
Confidence            3568899999999999999977665 5568999998755431100 00111111 5789888 86332        3467


Q ss_pred             eeEEEeccccccccCCH--H--HHHHHHHHHHhcccCCcEEEEEEcCch--HHHHHH
Q 025059          106 ADLVCCFQHLQMCFETE--E--RARRLLQNVSSLLKPGGYFLGITPDSS--TIWAKY  156 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~--~--~~~~~l~~i~~~LkpgG~~i~~~~~~~--~~~~~~  156 (258)
                      +|+|+|-.+-..  .+.  +  ....+|+-+.+.|++ |.|.+-+..+.  .+.+.+
T Consensus       145 ~DtllcDIgeSs--~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l  198 (267)
T 3p8z_A          145 CDTLLCDIGESS--PSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHL  198 (267)
T ss_dssp             CSEEEECCCCCC--SCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHH
T ss_pred             ccEEEEecCCCC--CChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHH
Confidence            999999765421  221  1  112367777899998 77777655543  344433

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.64  E-value=2.9e-05  Score=83.00  Aligned_cols=104  Identities=22%  Similarity=0.263  Sum_probs=57.5

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC------CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC-chhhhhhhc
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEK  102 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~  102 (258)
                      +|..+|||||.|+|..+..+...-      ...|+.+|+|+...+.|+++++..    ++.....|..+. ++      .
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~d~~~~~~~------~ 1308 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQWDPANPAPG------S 1308 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECCCSSCCCC--------
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----ccccccccccccccC------C
Confidence            357899999999998877665431      347999999999998888887653    333332343221 22      2


Q ss_pred             CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ...||+|++..++|.    ..+....+.+++++|+|||++++..+
T Consensus      1309 ~~~ydlvia~~vl~~----t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1309 LGKADLLVCNCALAT----LGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             ---CCEEEEECC------------------------CCEEEEEEC
T ss_pred             CCceeEEEEcccccc----cccHHHHHHHHHHhcCCCcEEEEEec
Confidence            457999999988874    45577899999999999999988643

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.59  E-value=0.00013  Score=62.75  Aligned_cols=78  Identities=15%  Similarity=0.052  Sum_probs=57.8

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc--CC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--AN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~  104 (258)
                      ..|+..++|..||.|+++..++..  +.++|+|+|.++.+++.|+ ++.    ..++.+++++..+  +...+...  .+
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~----~~Rv~lv~~nF~~--l~~~L~~~g~~~  127 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID----DPRFSIIHGPFSA--LGEYVAERDLIG  127 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC----CTTEEEEESCGGG--HHHHHHHTTCTT
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc----CCcEEEEeCCHHH--HHHHHHhcCCCC
Confidence            358899999999999999999876  3469999999999999984 552    2378999998754  32223221  13


Q ss_pred             ceeEEEecc
Q 025059          105 QADLVCCFQ  113 (258)
Q Consensus       105 ~fD~V~~~~  113 (258)
                      ++|.|+...
T Consensus       128 ~vDgILfDL  136 (347)
T 3tka_A          128 KIDGILLDL  136 (347)
T ss_dssp             CEEEEEEEC
T ss_pred             cccEEEECC
Confidence            688887643

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.54  E-value=0.00022  Score=59.50  Aligned_cols=55  Identities=22%  Similarity=0.264  Sum_probs=46.8

Q ss_pred             HHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc
Q 025059           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (258)
Q Consensus        22 ~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~   77 (258)
                      ..+|..+..++..|||..||+|..+......+. +++|+|+++.+++.|++|++..
T Consensus       203 ~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~  257 (260)
T 1g60_A          203 ERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQL  257 (260)
T ss_dssp             HHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-
T ss_pred             HHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhc
Confidence            355666678899999999999998888877665 9999999999999999998754

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.50  E-value=0.002  Score=55.65  Aligned_cols=130  Identities=13%  Similarity=0.121  Sum_probs=87.4

Q ss_pred             chHHhHHHHHHHHHHHHh----c--CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcC-----
Q 025059           11 LTHHRLYEFAKTALIKIY----S--HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR-----   78 (258)
Q Consensus        11 ~~~~~~~~~~k~~li~~~----~--~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~-----   78 (258)
                      +|...---|++...++..    +  ++...|+.||||.......+... +...++-+|. |+.++.-++.+...+     
T Consensus        71 ~P~in~g~~~Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~  149 (334)
T 1rjd_A           71 FPVMNYGTYLRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRIS  149 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhh
Confidence            565544455555544433    2  45678999999998877777654 3336777777 777777766665431     


Q ss_pred             ---------------CCceeEEEEcCCCCCchh-hhhhh--cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCc
Q 025059           79 ---------------KNFIAEFFEADPCAENFE-TQMQE--KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG  140 (258)
Q Consensus        79 ---------------~~~~~~~~~~d~~~~~~~-~~~~~--~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG  140 (258)
                                     ...+..++.+|+.+.... ..+..  ......++++-.++.|  .+.+....+++.+.+.. |+|
T Consensus       150 l~~~~~~~~~~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~Y--L~~~~~~~ll~~ia~~~-~~~  226 (334)
T 1rjd_A          150 LGLSKEDTAKSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCY--MHNNESQLLINTIMSKF-SHG  226 (334)
T ss_dssp             HTCCSSCCCCTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGG--SCHHHHHHHHHHHHHHC-SSE
T ss_pred             cccccccccccccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhC--CCHHHHHHHHHHHHhhC-CCc
Confidence                           013678999999874321 11111  2356788999999998  56888999999999987 677


Q ss_pred             EEEE
Q 025059          141 YFLG  144 (258)
Q Consensus       141 ~~i~  144 (258)
                      .+++
T Consensus       227 ~~v~  230 (334)
T 1rjd_A          227 LWIS  230 (334)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6653

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.48  E-value=0.018  Score=49.12  Aligned_cols=174  Identities=8%  Similarity=-0.041  Sum_probs=107.7

Q ss_pred             CEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcC--CCceeEEEEcCCCCCchhhhhhhc---CCc
Q 025059           33 VTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK---ANQ  105 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~---~~~  105 (258)
                      ..|++||||-=.  ..+.-. + ...++-+| -|..++..++.+...+  ...+..++.+|+.+ .+...+...   ...
T Consensus       104 ~QvV~LGaGlDT--ra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~  179 (310)
T 2uyo_A          104 RQFVILASGLDS--RAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSA  179 (310)
T ss_dssp             CEEEEETCTTCC--HHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTS
T ss_pred             CeEEEeCCCCCc--hhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCC
Confidence            569999998754  333222 2 24889999 5899998888886421  12378899999987 443333211   235


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch--HHHHHHHHhH-HhhhcCCCCCCCCCCCCcccCe
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS--TIWAKYQKNV-EAYHNRSSSMKPNLVPNCIRSE  182 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~  182 (258)
                      .-++++-.+++|  .+.+....+++.+...+.||+.+++......  .-.......+ ..+-..+         .     
T Consensus       180 Pt~~i~Egvl~Y--l~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~g---------~-----  243 (310)
T 2uyo_A          180 RTAWLAEGLLMY--LPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALG---------F-----  243 (310)
T ss_dssp             CEEEEECSCGGG--SCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC------------------
T ss_pred             CEEEEEechHhh--CCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcchhHHHHHHHHHHHHHcC---------C-----
Confidence            567788888887  4567889999999999999999999854432  1111111111 1110000         0     


Q ss_pred             eEEEEecccCCCCCCceeceEEEEccCccCCCccccc-hHHHHHHHHHcCcEEEEeCChhHHHHhccCC
Q 025059          183 SYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVH-FPSLIRLAREAGLEYVEIQNLNEFYDDNRHA  250 (258)
Q Consensus       183 ~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~-~~~l~~~~~~~Gf~~~~~~~f~~~~~~~~~~  250 (258)
                          .++              ..+.. .    .+..+ .++..+.+.++||+.+ ..+..+++..|...
T Consensus       244 ----~~~--------------~~l~~-~----~~~~~~~~~~~~~f~~~G~~~~-~~~~~e~~~~yg~~  288 (310)
T 2uyo_A          244 ----EQA--------------VDVQE-L----IYHDENRAVVADWLNRHGWRAT-AQSAPDEMRRVGRW  288 (310)
T ss_dssp             -------------------------C-C----TTCCTTCCCHHHHHTTTTEEEE-EEEHHHHHHHTTCC
T ss_pred             ----cCC--------------CCccc-c----ccCCCChHHHHHHHHHCcCccc-cCCHHHHHHHcCCC
Confidence                000              00000 0    01124 6788899999999999 77889999888664

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.11  E-value=0.00051  Score=57.78  Aligned_cols=99  Identities=15%  Similarity=-0.011  Sum_probs=63.9

Q ss_pred             CCCEEEEEcC------CCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 025059           31 PYVTVCDLYC------GAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGc------G~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (258)
                      -+.+|||+|+      ..|.....-. .+. +.++++|+.+-..         .    .-.++++|+....       ..
T Consensus       109 ~gmrVLDLGA~s~kg~APGS~VLr~~-~p~g~~VVavDL~~~~s---------d----a~~~IqGD~~~~~-------~~  167 (344)
T 3r24_A          109 YNMRVIHFGAGSDKGVAPGTAVLRQW-LPTGTLLVDSDLNDFVS---------D----ADSTLIGDCATVH-------TA  167 (344)
T ss_dssp             TTCEEEEESCCCTTSBCHHHHHHHHH-SCTTCEEEEEESSCCBC---------S----SSEEEESCGGGEE-------ES
T ss_pred             CCCEEEeCCCCCCCCCCCcHHHHHHh-CCCCcEEEEeeCccccc---------C----CCeEEEccccccc-------cC
Confidence            5799999996      5666322211 222 3899999976431         1    1145999974422       35


Q ss_pred             CceeEEEeccccccc-------cCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          104 NQADLVCCFQHLQMC-------FETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~-------~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      ++||+|++-.+-.-.       .....-.+.++.-+.+.|+|||.|++=+..+.
T Consensus       168 ~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs  221 (344)
T 3r24_A          168 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS  221 (344)
T ss_dssp             SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred             CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC
Confidence            889999986533210       01122467788888999999999999876664

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.71  E-value=0.0048  Score=53.65  Aligned_cols=58  Identities=17%  Similarity=0.186  Sum_probs=49.1

Q ss_pred             CCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC
Q 025059           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE   93 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~   93 (258)
                      +..|||||.|.|.++..++.. ...+++++++++..+...++.. ..   .+++++++|+...
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~---~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EG---SPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TT---SSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cC---CCEEEEECCccch
Confidence            589999999999999999875 4458999999999999888876 22   2789999999653

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.58  E-value=0.0036  Score=55.00  Aligned_cols=76  Identities=14%  Similarity=0.058  Sum_probs=57.1

Q ss_pred             CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh--hcCCceeEEE
Q 025059           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQADLVC  110 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~fD~V~  110 (258)
                      .+||||.||.|++...+...+...+.++|+++.+++..+.++.      ...++++|+.+........  .....+|+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~   76 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDGII   76 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence            6899999999999999988888778899999999887776654      3467889987654322110  0246899998


Q ss_pred             eccc
Q 025059          111 CFQH  114 (258)
Q Consensus       111 ~~~~  114 (258)
                      ...-
T Consensus        77 ggpP   80 (376)
T 3g7u_A           77 GGPP   80 (376)
T ss_dssp             ECCC
T ss_pred             ecCC
Confidence            7654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.39  E-value=0.0019  Score=56.02  Aligned_cols=74  Identities=15%  Similarity=0.145  Sum_probs=55.5

Q ss_pred             CCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           32 YVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ..+||||.||.|++...+...+  ...+.++|+++.+++..+.++..      ..++++|+.+.... .+  +...+|+|
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~-~~--~~~~~D~l   72 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLE-EF--DRLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHH-HH--HHHCCSEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHh-Hc--CcCCcCEE
Confidence            3689999999999999998887  44799999999999988887653      34678888664321 11  11268999


Q ss_pred             Eeccc
Q 025059          110 CCFQH  114 (258)
Q Consensus       110 ~~~~~  114 (258)
                      +...-
T Consensus        73 ~~gpP   77 (343)
T 1g55_A           73 LMSPP   77 (343)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            88764

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.26  E-value=0.0088  Score=51.49  Aligned_cols=69  Identities=14%  Similarity=0.057  Sum_probs=52.9

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      +.+||||.||.|++...+...+...+.++|+++.+++..+.++...    .    ++|+.+....     .-..+|+|+.
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~----~----~~Di~~~~~~-----~~~~~D~l~~   77 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK----P----EGDITQVNEK-----TIPDHDILCA   77 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC----C----BSCGGGSCGG-----GSCCCSEEEE
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC----C----cCCHHHcCHh-----hCCCCCEEEE
Confidence            5799999999999999998888878999999999998888776432    1    5777553321     1235899987


Q ss_pred             cc
Q 025059          112 FQ  113 (258)
Q Consensus       112 ~~  113 (258)
                      ..
T Consensus        78 gp   79 (327)
T 2c7p_A           78 GF   79 (327)
T ss_dssp             EC
T ss_pred             CC
Confidence            64

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.17  E-value=0.0088  Score=51.33  Aligned_cols=55  Identities=13%  Similarity=0.204  Sum_probs=46.4

Q ss_pred             HHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc
Q 025059           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (258)
Q Consensus        22 ~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~   77 (258)
                      ..+|..+..++..|||.-||+|..+......+. +.+|+|+++..++.+++|+...
T Consensus       243 ~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~  297 (323)
T 1boo_A          243 EFFIRMLTEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN  297 (323)
T ss_dssp             HHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred             HHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhc
Confidence            345666677999999999999998888777665 9999999999999999998644

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.03  E-value=0.012  Score=50.36  Aligned_cols=55  Identities=25%  Similarity=0.270  Sum_probs=45.3

Q ss_pred             HHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecCh---hHHHHHHHHHHhc
Q 025059           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVAT---SGIGEARDTWENQ   77 (258)
Q Consensus        22 ~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~---~~l~~a~~~~~~~   77 (258)
                      ..+|..+..++..|||.-||+|..+......+. +.+|+|+++   ..++.+++|+...
T Consensus       233 ~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          233 ERLVRALSHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             HHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC---
T ss_pred             HHHHHHhCCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHc
Confidence            355667778999999999999998888877765 999999999   9999999998643

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.88  E-value=0.032  Score=48.53  Aligned_cols=98  Identities=12%  Similarity=0.074  Sum_probs=63.6

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (258)
                      .+++.+||-+|+|. |..+.++++. +...|+++|.+++.++.+++.-.      . ..+..  .+..+.+.+.. ..+.
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa------~-~vi~~--~~~~~~~~~~~~~~gg  258 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA------T-HVINS--KTQDPVAAIKEITDGG  258 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC------S-EEEET--TTSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC------C-EEecC--CccCHHHHHHHhcCCC
Confidence            45889999999886 6666777665 55479999999998888864311      1 12222  22223222211 2337


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+|+..-..          ...+....++|++||.++..
T Consensus       259 ~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          259 VNFALESTGS----------PEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             EEEEEECSCC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred             CcEEEECCCC----------HHHHHHHHHHHhcCCEEEEe
Confidence            9999764421          24567788999999999876

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=95.79  E-value=0.81  Score=39.26  Aligned_cols=190  Identities=13%  Similarity=0.093  Sum_probs=110.7

Q ss_pred             CcchHHhHHHHHHHHHHHHhc-------CCCCEEEEEcCCCCccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcC-
Q 025059            9 SELTHHRLYEFAKTALIKIYS-------HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQR-   78 (258)
Q Consensus         9 ~~~~~~~~~~~~k~~li~~~~-------~~~~~VLDlGcG~G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~-   78 (258)
                      +++|...---|++...++..+       ++...|+-||||-=.....+...+  ...++=+|. |+.++.=++.+...+ 
T Consensus        61 rr~P~inrG~~~Rt~~iD~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~  139 (334)
T 3iei_A           61 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPP  139 (334)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchh
Confidence            677776655666665555443       245789999999855444443331  236777776 444443333333200 


Q ss_pred             ---------------------CCceeEEEEcCCCCCc-hhhhhhh---cCCceeEEEeccccccccCCHHHHHHHHHHHH
Q 025059           79 ---------------------KNFIAEFFEADPCAEN-FETQMQE---KANQADLVCCFQHLQMCFETEERARRLLQNVS  133 (258)
Q Consensus        79 ---------------------~~~~~~~~~~d~~~~~-~~~~~~~---~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~  133 (258)
                                           ...+..++.+|+.+.. +...+..   .....-++++-.++.|  .+.+....+++.+.
T Consensus       140 l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~Y--L~~~~~~~ll~~ia  217 (334)
T 3iei_A          140 LSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVY--MTPEQSANLLKWAA  217 (334)
T ss_dssp             HHHHHHHHSSSSSCBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGG--SCHHHHHHHHHHHH
T ss_pred             hhhhhcccccccccccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhC--CCHHHHHHHHHHHH
Confidence                                 0226788999987642 2222211   2345667888888887  56888999999999


Q ss_pred             hcccCCcEEEEEEcCc-hHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccC
Q 025059          134 SLLKPGGYFLGITPDS-STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISA  212 (258)
Q Consensus       134 ~~LkpgG~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~  212 (258)
                      +...+|..++....+. +...+.+.++..   ..+                           .|..|          .  
T Consensus       218 ~~f~~~~~i~yE~i~p~d~fg~~M~~~l~---~~g---------------------------~pl~s----------l--  255 (334)
T 3iei_A          218 NSFERAMFINYEQVNMGDRFGQIMIENLR---RRQ---------------------------CDLAG----------V--  255 (334)
T ss_dssp             HHCSSEEEEEEEECCTTSHHHHHHHHHHH---TTT---------------------------CCCTT----------G--
T ss_pred             HhCCCceEEEEeccCCCCHHHHHHHHHHH---HhC---------------------------CCCcc----------c--
Confidence            8876554444433332 222233332221   111                           01111          1  


Q ss_pred             CCccccchHHHHHHHHHcCcEEEEeCChhHHHH
Q 025059          213 ETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD  245 (258)
Q Consensus       213 ~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~~~~  245 (258)
                        ....+++...+.+.++||+.+...+..++|+
T Consensus       256 --~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~~~  286 (334)
T 3iei_A          256 --ETCKSLESQKERLLSNGWETASAVDMMELYN  286 (334)
T ss_dssp             --GGGGCHHHHHHHHHTTTCSEEEEEEHHHHHH
T ss_pred             --ccCCCHHHHHHHHHHcCCCcceeecHHHHHH
Confidence              0134667778888999999999999999984

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=95.79  E-value=0.0029  Score=53.13  Aligned_cols=107  Identities=7%  Similarity=-0.059  Sum_probs=75.1

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      +..+||+=+|+|..+..+.+.+ .+++.+|.++..++..++++...   .++.++..|...  ....+..+..+||+|.+
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~---~~~~V~~~D~~~--~L~~l~~~~~~fdLVfi  165 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFN---KKVYVNHTDGVS--KLNALLPPPEKRGLIFI  165 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTT---SCEEEECSCHHH--HHHHHCSCTTSCEEEEE
T ss_pred             CCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcC---CcEEEEeCcHHH--HHHHhcCCCCCccEEEE
Confidence            4668999999999999988844 79999999999999888877552   268889888632  11112123457999977


Q ss_pred             ccccccccCCHHHHHHHHHHHHh--cccCCcEEEEEEcC
Q 025059          112 FQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPD  148 (258)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~i~~--~LkpgG~~i~~~~~  148 (258)
                      --  .|  +.......+++.+.+  .+.|+|++++..|-
T Consensus       166 DP--PY--e~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi  200 (283)
T 2oo3_A          166 DP--SY--ERKEEYKEIPYAIKNAYSKFSTGLYCVWYPV  200 (283)
T ss_dssp             CC--CC--CSTTHHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred             CC--CC--CCCcHHHHHHHHHHHhCccCCCeEEEEEEec
Confidence            43  22  212345566665555  56799999998654

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=95.75  E-value=0.023  Score=48.57  Aligned_cols=100  Identities=14%  Similarity=0.014  Sum_probs=66.1

Q ss_pred             CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEec
Q 025059           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~  112 (258)
                      ++||||-||-|++...+...++.-+.++|+++.+.+.-+.++       ...++++|+.+....     .-...|+++..
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~-------~~~~~~~DI~~i~~~-----~~~~~D~l~gg   68 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-------SAKLIKGDISKISSD-----EFPKCDGIIGG   68 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC-------CSEEEESCGGGCCGG-----GSCCCSEEECC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-------CCCcccCChhhCCHh-----hCCcccEEEec
Confidence            479999999999999998888877889999999888766654       235788998765432     22468998775


Q ss_pred             ccccc--------ccCCH-HHHHHHHHHHHhcccCCcEEEEE
Q 025059          113 QHLQM--------CFETE-ERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       113 ~~l~~--------~~~~~-~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +-...        -+.+. ..+-.-+-.+.+.++|.- |++.
T Consensus        69 pPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~-~~~E  109 (331)
T 3ubt_Y           69 PPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIF-FLAE  109 (331)
T ss_dssp             CCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCSE-EEEE
T ss_pred             CCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCeE-EEee
Confidence            53221        01122 123333334566678974 4444

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.71  E-value=0.026  Score=47.79  Aligned_cols=75  Identities=17%  Similarity=0.105  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCe--EEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIAN--YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~--v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ...+|+||-||.|++...+...+...  +.++|+++.+++.-+.++.      ...+..+|+.+..... ++ ..+.+|+
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~-i~-~~~~~Dl   86 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKH-IQ-EWGPFDL   86 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHH-HH-HTCCCSE
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHH-hc-ccCCcCE
Confidence            45789999999999999998888755  6999999998877665543      2357789987654321 21 1257999


Q ss_pred             EEecc
Q 025059          109 VCCFQ  113 (258)
Q Consensus       109 V~~~~  113 (258)
                      ++..+
T Consensus        87 l~ggp   91 (295)
T 2qrv_A           87 VIGGS   91 (295)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            98765

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.60  E-value=0.13  Score=42.49  Aligned_cols=117  Identities=12%  Similarity=0.082  Sum_probs=71.3

Q ss_pred             HHHHhcCCCCEEEEEcCCCCccHHHHHHc--------CCCeEEEEe-----cChh----------------------HHH
Q 025059           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA--------LIANYIGID-----VATS----------------------GIG   68 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~~~~~--------~~~~v~gvD-----~s~~----------------------~l~   68 (258)
                      |.+....-...|+|+||-.|+.+..++..        ...+++++|     +.+.                      .+.
T Consensus        62 l~~~i~~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~  141 (257)
T 3tos_A           62 LYRQVLDVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLK  141 (257)
T ss_dssp             HHHHTTTSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHH
T ss_pred             HHHHhhCCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHH
Confidence            33443444468999999999988776542        236899999     3221                      112


Q ss_pred             HHHHHH---HhcCC-CceeEEEEcCCCCCchhhhhh-hcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059           69 EARDTW---ENQRK-NFIAEFFEADPCAENFETQMQ-EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus        69 ~a~~~~---~~~~~-~~~~~~~~~d~~~~~~~~~~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      ...+..   ...+. ..++.++.+++.+. +...+. .+..++|+|.+-...      -+.....++.+...|+|||+++
T Consensus       142 ~~l~~~~~~~~~g~~~~~i~li~G~~~dT-L~~~l~~~~~~~~dlv~ID~D~------Y~~t~~~le~~~p~l~~GGvIv  214 (257)
T 3tos_A          142 EVLDAHECSDFFGHVTQRSVLVEGDVRET-VPRYLAENPQTVIALAYFDLDL------YEPTKAVLEAIRPYLTKGSIVA  214 (257)
T ss_dssp             HHHHHHHTTSTTTTSCCSEEEEESCHHHH-HHHHHHHCTTCCEEEEEECCCC------HHHHHHHHHHHGGGEEEEEEEE
T ss_pred             HHHHHHhhhhhcCCCCCcEEEEEecHHHH-HHHHHHhCCCCceEEEEEcCcc------cchHHHHHHHHHHHhCCCcEEE
Confidence            111111   11121 24799999996331 111111 134579999776532      3456678899999999999999


Q ss_pred             EEEc
Q 025059          144 GITP  147 (258)
Q Consensus       144 ~~~~  147 (258)
                      +.-.
T Consensus       215 ~DD~  218 (257)
T 3tos_A          215 FDEL  218 (257)
T ss_dssp             ESST
T ss_pred             EcCC
Confidence            8854

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.49  E-value=0.025  Score=48.66  Aligned_cols=76  Identities=12%  Similarity=0.110  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCC--CeE-EEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALI--ANY-IGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~--~~v-~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      ...+|+|+.||.|++...+...+.  ..+ .++|+++.+.+.-+.++...       ++++|+.+..... +  +...+|
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~~~-i--~~~~~D   78 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISIKQ-I--ESLNCN   78 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCHHH-H--HHTCCC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCHHH-h--ccCCCC
Confidence            356899999999999999988874  456 79999999988877776421       5678887755422 2  223689


Q ss_pred             EEEeccccc
Q 025059          108 LVCCFQHLQ  116 (258)
Q Consensus       108 ~V~~~~~l~  116 (258)
                      +++......
T Consensus        79 il~ggpPCQ   87 (327)
T 3qv2_A           79 TWFMSPPCQ   87 (327)
T ss_dssp             EEEECCCCT
T ss_pred             EEEecCCcc
Confidence            998765433

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.35  E-value=0.017  Score=49.88  Aligned_cols=72  Identities=13%  Similarity=0.192  Sum_probs=53.2

Q ss_pred             CEEEEEcCCCCccHHHHHHcCC--CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           33 VTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      .+|+|+.||.|++...+...+.  ..+.++|+++.+.+.-+.++..      ..+.+.|+.+..... +  +...+|+++
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~-~--~~~~~D~l~   74 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQV-I--KKWNVDTIL   74 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHH-H--HHTTCCEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHH-h--ccCCCCEEE
Confidence            5899999999999999987775  4688999999998877766643      346778886654322 2  223689998


Q ss_pred             ecc
Q 025059          111 CFQ  113 (258)
Q Consensus       111 ~~~  113 (258)
                      ..+
T Consensus        75 ggp   77 (333)
T 4h0n_A           75 MSP   77 (333)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.22  E-value=0.051  Score=46.56  Aligned_cols=99  Identities=13%  Similarity=0.063  Sum_probs=64.0

Q ss_pred             hcCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      -..++.+||-.|+|. |..+.++++....+++++|.+++.++.+++.-.      . ..+  |..+..+.+.+....+.+
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa------~-~~i--~~~~~~~~~~~~~~~g~~  233 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGA------E-VAV--NARDTDPAAWLQKEIGGA  233 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC------S-EEE--ETTTSCHHHHHHHHHSSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCC------C-EEE--eCCCcCHHHHHHHhCCCC
Confidence            345889999999976 777777777644499999999998887765311      1 122  222223332222223478


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|+....          ....+..+.++|++||.++..
T Consensus       234 d~vid~~g----------~~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          234 HGVLVTAV----------SPKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             EEEEESSC----------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             CEEEEeCC----------CHHHHHHHHHHhccCCEEEEe
Confidence            99865432          124567778899999999876

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.19  E-value=0.17  Score=37.27  Aligned_cols=100  Identities=10%  Similarity=0.002  Sum_probs=61.7

Q ss_pred             CEEEEEcCCC-CccHHHHHH-cCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           33 VTVCDLYCGA-GVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        33 ~~VLDlGcG~-G~~~~~~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      .+|+=+|||. |..+...+. .+. .++++|.+++.++.+++    .    .+..+.+|..+.......  .-..+|+|+
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~----g~~~i~gd~~~~~~l~~a--~i~~ad~vi   76 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----R----GVRAVLGNAANEEIMQLA--HLECAKWLI   76 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----T----TCEEEESCTTSHHHHHHT--TGGGCSEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----c----CCCEEECCCCCHHHHHhc--CcccCCEEE
Confidence            5788899986 433333333 355 89999999998877654    2    456788998765432221  235789887


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      +..      .+.... ..+....+.+.|+..++....+..
T Consensus        77 ~~~------~~~~~n-~~~~~~a~~~~~~~~iiar~~~~~  109 (140)
T 3fwz_A           77 LTI------PNGYEA-GEIVASARAKNPDIEIIARAHYDD  109 (140)
T ss_dssp             ECC------SCHHHH-HHHHHHHHHHCSSSEEEEEESSHH
T ss_pred             EEC------CChHHH-HHHHHHHHHHCCCCeEEEEECCHH
Confidence            643      223222 223345666788888776655543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=94.58  E-value=0.062  Score=47.19  Aligned_cols=106  Identities=15%  Similarity=0.006  Sum_probs=63.9

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-hhhhhh--cC
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ETQMQE--KA  103 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~--~~  103 (258)
                      ..++.+||-+|||. |..+..+++. +..+|+++|.+++.++.+++.        .++.+  |..+..+ .+.+..  ..
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l--------Ga~~i--~~~~~~~~~~~~~~~~~g  252 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA--------GFETI--DLRNSAPLRDQIDQILGK  252 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT--------TCEEE--ETTSSSCHHHHHHHHHSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc--------CCcEE--cCCCcchHHHHHHHHhCC
Confidence            45899999999976 7777777765 555899999999888777532        22333  2222222 222211  22


Q ss_pred             CceeEEEeccccccccCC-H----HHHHHHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQMCFET-E----ERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~-~----~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+|+|+..-.-... .. .    ......+..+.++|++||.+++.
T Consensus       253 ~g~Dvvid~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          253 PEVDCGVDAVGFEAH-GLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             SCEEEEEECSCTTCB-CSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             CCCCEEEECCCCccc-cccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence            369999765432110 00 0    00113577788899999998765

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.42  E-value=0.21  Score=43.09  Aligned_cols=103  Identities=13%  Similarity=0.002  Sum_probs=64.7

Q ss_pred             hcCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cC
Q 025059           28 YSHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~  103 (258)
                      -..++.+||=+|+|. |..+.++++. +...++++|.+++.++.+++. ...    -+.+...+.....+...+..  ..
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~----~~~~~~~~~~~~~~~~~v~~~t~g  250 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE----VVTHKVERLSAEESAKKIVESFGG  250 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT----CEEEECCSCCHHHHHHHHHHHTSS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh----cccccccccchHHHHHHHHHHhCC
Confidence            356899999999875 6666777665 454599999999999988765 222    12222111111122222211  24


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+|+|+..-+-          ...+....++|++||.++..
T Consensus       251 ~g~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          251 IEPAVALECTGV----------ESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             CCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCCCEEEECCCC----------hHHHHHHHHHhcCCCEEEEE
Confidence            579999764421          23567778899999999876

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=94.11  E-value=0.13  Score=45.53  Aligned_cols=61  Identities=5%  Similarity=-0.056  Sum_probs=47.3

Q ss_pred             CCCCEEEEEcCCCCccHHHHH-Hc-C-CCeEEEEecChhHHHHHHHHHHh--cCCC-ceeEEEEcCC
Q 025059           30 HPYVTVCDLYCGAGVDVDKWE-TA-L-IANYIGIDVATSGIGEARDTWEN--QRKN-FIAEFFEADP   90 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~-~~-~-~~~v~gvD~s~~~l~~a~~~~~~--~~~~-~~~~~~~~d~   90 (258)
                      +++..|+|+|++.|..+..++ .. + .++|+++++++...+..+++...  ++.. .++.+++.-+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al  291 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA  291 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence            478899999999999988877 33 3 36999999999999999988876  2111 3677766554

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.07  E-value=0.065  Score=41.97  Aligned_cols=96  Identities=15%  Similarity=0.086  Sum_probs=58.5

Q ss_pred             cCCCCEEEEEcCC--CCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cC
Q 025059           29 SHPYVTVCDLYCG--AGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (258)
Q Consensus        29 ~~~~~~VLDlGcG--~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~  103 (258)
                      .+++.+||..|++  -|..+..++.. +. +++++|.+++.++.+++    .+.  . ..  .|..+....+.+..  ..
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~--~-~~--~d~~~~~~~~~~~~~~~~  105 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGV--E-YV--GDSRSVDFADEILELTDG  105 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCC--S-EE--EETTCSTHHHHHHHHTTT
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCC--C-EE--eeCCcHHHHHHHHHHhCC
Confidence            4578999999953  35445555444 54 89999999887766543    111  1 11  24333333222211  12


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+|+|+...+           ...+..+.++|+|||.++..
T Consensus       106 ~~~D~vi~~~g-----------~~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          106 YGVDVVLNSLA-----------GEAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             CCEEEEEECCC-----------THHHHHHHHTEEEEEEEEEC
T ss_pred             CCCeEEEECCc-----------hHHHHHHHHHhccCCEEEEE
Confidence            46999986542           13567788999999998875

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=93.76  E-value=0.19  Score=43.28  Aligned_cols=101  Identities=10%  Similarity=0.029  Sum_probs=62.0

Q ss_pred             hcCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC-Cchhhhhhh-cC
Q 025059           28 YSHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQE-KA  103 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~-~~  103 (258)
                      -..++.+||-+|+|. |..+.++++. +..+++++|.+++.++.+++.-.      . ..+..+-.+ ..+...+.. ..
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa------~-~vi~~~~~~~~~~~~~i~~~~~  240 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA------D-LVLQISKESPQEIARKVEGQLG  240 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC------S-EEEECSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC------C-EEEcCcccccchHHHHHHHHhC
Confidence            356899999999875 6666777665 44489999999988887764211      1 222211000 112111111 12


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+|+|+..-+      .    ...+....++|++||.++..
T Consensus       241 ~g~D~vid~~g------~----~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          241 CKPEVTIECTG------A----EASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             SCCSEEEECSC------C----HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCCCEEEECCC------C----hHHHHHHHHHhcCCCEEEEE
Confidence            57999976432      1    13466777899999999876

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=93.74  E-value=0.19  Score=42.76  Aligned_cols=97  Identities=14%  Similarity=-0.010  Sum_probs=60.3

Q ss_pred             cCCCCEEEEEcCC--CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC-Cchhhhhhh-cCC
Q 025059           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQE-KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG--~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~-~~~  104 (258)
                      ..++.+||-.|++  -|..+..++.....+++++|.+++.++.++ .+   +.  ..   ..|..+ ..+...+.. ..+
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~-~~---g~--~~---~~d~~~~~~~~~~~~~~~~~  213 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QI---GF--DA---AFNYKTVNSLEEALKKASPD  213 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HT---TC--SE---EEETTSCSCHHHHHHHHCTT
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hc---CC--cE---EEecCCHHHHHHHHHHHhCC
Confidence            4578999999983  455555555543349999999988887773 22   11  11   124333 233222211 225


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+...+       .    ..+....++|++||.++..
T Consensus       214 ~~d~vi~~~g-------~----~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          214 GYDCYFDNVG-------G----EFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             CEEEEEESSC-------H----HHHHHHHTTEEEEEEEEEC
T ss_pred             CCeEEEECCC-------h----HHHHHHHHHHhcCCEEEEE
Confidence            7999976553       1    2367788999999999865

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.73  E-value=0.26  Score=42.08  Aligned_cols=99  Identities=16%  Similarity=0.170  Sum_probs=62.0

Q ss_pred             hcCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      -..++.+||-+|+|. |..+.++++....+++++|.+++.++.+++ +   +.  . ..  .|..+..+...+....+.+
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-l---Ga--~-~~--~d~~~~~~~~~~~~~~~~~  231 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE-L---GA--D-LV--VNPLKEDAAKFMKEKVGGV  231 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-T---TC--S-EE--ECTTTSCHHHHHHHHHSSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-C---CC--C-EE--ecCCCccHHHHHHHHhCCC
Confidence            456889999999964 555555655533499999999988887753 2   11  1 11  2433333322221111579


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|+...+.          ...+....++|+++|.++..
T Consensus       232 d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          232 HAAVVTAVS----------KPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             EEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CEEEECCCC----------HHHHHHHHHHhhcCCEEEEe
Confidence            999765421          13567778899999998865

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=93.71  E-value=0.19  Score=43.24  Aligned_cols=98  Identities=12%  Similarity=0.060  Sum_probs=62.8

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (258)
                      .+++.+||=+|+|. |..+.++++. +..+|+++|.+++.++.+++.-.      . ..+  |..+..+.+.+..  ...
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa------~-~vi--~~~~~~~~~~v~~~t~g~  234 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA------T-DII--NYKNGDIVEQILKATDGK  234 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTC------C-EEE--CGGGSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC------c-eEE--cCCCcCHHHHHHHHcCCC
Confidence            45899999999875 6666777666 44489999999988887765421      1 122  2112223222211  234


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+....-          ...+....++|+|||.++..
T Consensus       235 g~D~v~d~~g~----------~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          235 GVDKVVIAGGD----------VHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             CEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             CCCEEEECCCC----------hHHHHHHHHHHhcCCEEEEe
Confidence            69999764421          13567778899999999865

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=93.57  E-value=0.21  Score=43.15  Aligned_cols=97  Identities=13%  Similarity=-0.063  Sum_probs=62.0

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCCc
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~  105 (258)
                      .+++.+||=+|+|. |..+..+++....+++++|.+++.++.+++.-.      . ..+..+  ...+.+.+..  ....
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa------~-~vi~~~--~~~~~~~v~~~~~g~g  257 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA------D-HGINRL--EEDWVERVYALTGDRG  257 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC------S-EEEETT--TSCHHHHHHHHHTTCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC------C-EEEcCC--cccHHHHHHHHhCCCC
Confidence            45889999999875 666666666544499999999988888765311      1 222221  1222222211  2347


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+|+...+-           ..+....++|++||.++..
T Consensus       258 ~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  286 (363)
T 3uog_A          258 ADHILEIAGG-----------AGLGQSLKAVAPDGRISVI  286 (363)
T ss_dssp             EEEEEEETTS-----------SCHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEECCCh-----------HHHHHHHHHhhcCCEEEEE
Confidence            9999765431           2356677899999999876

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=93.53  E-value=0.16  Score=43.62  Aligned_cols=100  Identities=14%  Similarity=0.080  Sum_probs=61.2

Q ss_pred             hcCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--c--
Q 025059           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--K--  102 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~--  102 (258)
                      -..++.+||-+|+|. |..+.++++....+|+++|.+++.++.+++.    +.  . ..+..+- ...+...+..  .  
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga--~-~~~~~~~-~~~~~~~i~~~~~~~  236 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA--D-VTLVVDP-AKEEESSIIERIRSA  236 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC--S-EEEECCT-TTSCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----CC--C-EEEcCcc-cccHHHHHHHHhccc
Confidence            356899999999875 6666666665334799999999988877632    11  1 1222110 0122111111  1  


Q ss_pred             -CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          103 -ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 -~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                       ...+|+|+.....          ...+....++|+++|.++..
T Consensus       237 ~g~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          237 IGDLPNVTIDCSGN----------EKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             SSSCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             cCCCCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence             3579999764421          13466777899999999876

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=93.53  E-value=0.18  Score=43.21  Aligned_cols=91  Identities=16%  Similarity=0.103  Sum_probs=61.3

Q ss_pred             hcCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      -..++.+||-+|+|. |..+.++++....+++++|.+++.++.+++.    +  ... .+ .+.  ..+       ...+
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----G--a~~-v~-~~~--~~~-------~~~~  235 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSM----G--VKH-FY-TDP--KQC-------KEEL  235 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHT----T--CSE-EE-SSG--GGC-------CSCE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc----C--CCe-ec-CCH--HHH-------hcCC
Confidence            456899999999875 6666777666444999999999998887652    1  111 22 221  111       2279


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|+...+-.          ..+....++|+++|.++..
T Consensus       236 D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          236 DFIISTIPTH----------YDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             EEEEECCCSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred             CEEEECCCcH----------HHHHHHHHHHhcCCEEEEE
Confidence            9997654322          2466778899999999876

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.49  E-value=0.25  Score=42.91  Aligned_cols=96  Identities=16%  Similarity=0.080  Sum_probs=61.3

Q ss_pred             hcCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      -..++.+||-+|+|. |..+.++++....+++++|.+++.++.+++. ..     . ..+  |..+......+   .+.+
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~l-Ga-----~-~vi--~~~~~~~~~~~---~~g~  258 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL-GA-----D-EVV--NSRNADEMAAH---LKSF  258 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH-TC-----S-EEE--ETTCHHHHHTT---TTCE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC-----c-EEe--ccccHHHHHHh---hcCC
Confidence            356899999999875 6666677665444799999999998888652 11     1 122  21111111111   2579


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|+..-+..          ..+....++|+++|.++..
T Consensus       259 Dvvid~~g~~----------~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          259 DFILNTVAAP----------HNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             EEEEECCSSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred             CEEEECCCCH----------HHHHHHHHHhccCCEEEEe
Confidence            9997654321          1355677899999998865

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=93.48  E-value=0.39  Score=41.63  Aligned_cols=99  Identities=16%  Similarity=0.076  Sum_probs=63.9

Q ss_pred             hcCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh----
Q 025059           28 YSHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE----  101 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----  101 (258)
                      -+.++.+||=+|+|. |..+.++++. +..+++++|.+++.++.+++.-.      . ..+  |..+..+.+.+..    
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa------~-~vi--~~~~~~~~~~i~~~~~~  249 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGA------T-ATV--DPSAGDVVEAIAGPVGL  249 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC------S-EEE--CTTSSCHHHHHHSTTSS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC------C-EEE--CCCCcCHHHHHHhhhhc
Confidence            456899999999875 6666666665 44589999999998887765311      1 111  2222223222211    


Q ss_pred             cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+.+|+|+..-+.          ...+..+.++|++||.++..
T Consensus       250 ~~gg~Dvvid~~G~----------~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          250 VPGGVDVVIECAGV----------AETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             STTCEEEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             cCCCCCEEEECCCC----------HHHHHHHHHHhccCCEEEEE
Confidence            23479999764321          24567788899999999876

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.39  E-value=0.2  Score=43.78  Aligned_cols=107  Identities=15%  Similarity=0.057  Sum_probs=64.2

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc-hhhhhhh--cC
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FETQMQE--KA  103 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~--~~  103 (258)
                      .+++.+||-+|+|. |..+.++++. +...++++|.+++.++.+++.        .++.+  |..+.. +.+.+..  ..
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l--------Ga~~i--~~~~~~~~~~~v~~~t~g  252 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ--------GFEIA--DLSLDTPLHEQIAALLGE  252 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT--------TCEEE--ETTSSSCHHHHHHHHHSS
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc--------CCcEE--ccCCcchHHHHHHHHhCC
Confidence            45889999999876 6677777765 444799999999988887542        22322  222211 2222211  23


Q ss_pred             CceeEEEeccccccccC-----CHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQMCFE-----TEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~-----~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+|+|+..-+......     +.+.....+....++|++||.+++.
T Consensus       253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          253 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence            47999976543210000     0001123577788899999998765

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=93.06  E-value=0.23  Score=42.30  Aligned_cols=98  Identities=10%  Similarity=-0.056  Sum_probs=61.8

Q ss_pred             cCCCCEEEEEcCC--CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG--~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (258)
                      .+++.+||-.|++  -|..+..+++....+++++|.+++.++.+.+.+..     . ..  .|..+..+...+.. ..+.
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~-----~-~~--~~~~~~~~~~~~~~~~~~~  218 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGF-----D-GA--IDYKNEDLAAGLKRECPKG  218 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC-----S-EE--EETTTSCHHHHHHHHCTTC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC-----C-EE--EECCCHHHHHHHHHhcCCC
Confidence            4589999999983  35666666655334999999999887776333211     1 11  23223333322211 2357


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+|+...+       .    ..+....++|++||.++..
T Consensus       219 ~d~vi~~~g-------~----~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          219 IDVFFDNVG-------G----EILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             EEEEEESSC-------H----HHHHHHHTTEEEEEEEEEC
T ss_pred             ceEEEECCC-------c----chHHHHHHHHhhCCEEEEE
Confidence            999976542       1    2577888999999999875

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=92.93  E-value=0.36  Score=41.53  Aligned_cols=96  Identities=14%  Similarity=0.063  Sum_probs=60.9

Q ss_pred             cCCC------CEEEEEcCCC-CccH-HHHH-Hc-CCCeEEEEecChh---HHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059           29 SHPY------VTVCDLYCGA-GVDV-DKWE-TA-LIANYIGIDVATS---GIGEARDTWENQRKNFIAEFFEADPCAENF   95 (258)
Q Consensus        29 ~~~~------~~VLDlGcG~-G~~~-~~~~-~~-~~~~v~gvD~s~~---~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (258)
                      .+++      .+||=+|+|. |..+ .+++ +. +..+++++|.+++   .++.+++.        .++.+  |..+..+
T Consensus       164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l--------Ga~~v--~~~~~~~  233 (357)
T 2b5w_A          164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL--------DATYV--DSRQTPV  233 (357)
T ss_dssp             HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT--------TCEEE--ETTTSCG
T ss_pred             CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc--------CCccc--CCCccCH
Confidence            4578      9999999864 5566 6666 54 4434999999988   77777532        22333  3333333


Q ss_pred             hhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+ +....+.+|+|+-.-+      .    ...+..+.++|+++|.++..
T Consensus       234 ~~-i~~~~gg~Dvvid~~g------~----~~~~~~~~~~l~~~G~iv~~  272 (357)
T 2b5w_A          234 ED-VPDVYEQMDFIYEATG------F----PKHAIQSVQALAPNGVGALL  272 (357)
T ss_dssp             GG-HHHHSCCEEEEEECSC------C----HHHHHHHHHHEEEEEEEEEC
T ss_pred             HH-HHHhCCCCCEEEECCC------C----hHHHHHHHHHHhcCCEEEEE
Confidence            32 2111237999975432      1    13567778899999998876

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=92.92  E-value=0.56  Score=40.54  Aligned_cols=100  Identities=14%  Similarity=0.054  Sum_probs=61.8

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (258)
                      ..++.+||-+|+|. |..+.++++. +..+|+++|.+++.++.+++.    +.  . ..+..+-....+.+.+.. ..+.
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga--~-~vi~~~~~~~~~~~~i~~~t~gg  261 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GA--T-ECLNPKDYDKPIYEVICEKTNGG  261 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TC--S-EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CC--c-EEEecccccchHHHHHHHHhCCC
Confidence            45889999999875 5566666665 555899999999988887642    10  1 122111001122222211 2347


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~~i~~  145 (258)
                      +|+|+..-+.          ...+....++|+++ |.++..
T Consensus       262 ~Dvvid~~g~----------~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          262 VDYAVECAGR----------IETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             BSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCEEEECCCC----------HHHHHHHHHHHhcCCCEEEEE
Confidence            9999764321          23567788899999 998865

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=92.89  E-value=0.72  Score=40.39  Aligned_cols=102  Identities=14%  Similarity=-0.012  Sum_probs=61.7

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (258)
                      ..++.+||=+|+|. |..+.++++. +..+++++|.+++.++.+++.-.      . ..+  |..+..+.+.+..  ...
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa------~-~vi--~~~~~~~~~~i~~~t~g~  281 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA------D-HVI--DPTKENFVEAVLDYTNGL  281 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC------S-EEE--CTTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC------C-EEE--cCCCCCHHHHHHHHhCCC
Confidence            45889999999864 5566666665 44589999999998888865421      1 122  2222233222211  234


Q ss_pred             ceeEEEeccccccccCCH-HHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETE-ERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~-~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+-.-+      .. .....+++.+.+++++||.++..
T Consensus       282 g~D~vid~~g------~~~~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          282 GAKLFLEATG------VPQLVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             CCSEEEECSS------CHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             CCCEEEECCC------CcHHHHHHHHHHHHhccCCCcEEEEe
Confidence            7999976432      12 12334444444666999999876

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=92.89  E-value=0.58  Score=40.41  Aligned_cols=100  Identities=13%  Similarity=0.126  Sum_probs=61.7

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (258)
                      .+++.+||-+|+|. |..+.++++. +..+++++|.+++.++.+++.-.      . ..+...-....+.+.+.. ..+.
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa------~-~vi~~~~~~~~~~~~v~~~~~~g  260 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA------T-ECINPQDFSKPIQEVLIEMTDGG  260 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC------S-EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC------c-eEeccccccccHHHHHHHHhCCC
Confidence            45889999999875 5566666665 55489999999999888864311      1 122111001122222211 2347


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~~i~~  145 (258)
                      +|+|+.....          ...+....++|+++ |.++..
T Consensus       261 ~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          261 VDYSFECIGN----------VKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             BSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCEEEECCCc----------HHHHHHHHHhhccCCcEEEEE
Confidence            9999764421          23567788899999 998875

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=92.84  E-value=0.99  Score=32.86  Aligned_cols=100  Identities=15%  Similarity=0.094  Sum_probs=58.5

Q ss_pred             CCEEEEEcCCC-CccH-HHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           32 YVTVCDLYCGA-GVDV-DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        32 ~~~VLDlGcG~-G~~~-~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ..+|+=+|||. |..+ ..+...+. +++++|.+++.++.+++.        ...++.+|..+.......  ....+|+|
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~--------~~~~~~gd~~~~~~l~~~--~~~~~d~v   74 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDE--------GFDAVIADPTDESFYRSL--DLEGVSAV   74 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT--------TCEEEECCTTCHHHHHHS--CCTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC--------CCcEEECCCCCHHHHHhC--CcccCCEE
Confidence            35788899875 3222 23333355 899999999887766532        356788998765432221  23578988


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      ++...      +.+ ....+....+.+. ...++....+..
T Consensus        75 i~~~~------~~~-~n~~~~~~a~~~~-~~~iia~~~~~~  107 (141)
T 3llv_A           75 LITGS------DDE-FNLKILKALRSVS-DVYAIVRVSSPK  107 (141)
T ss_dssp             EECCS------CHH-HHHHHHHHHHHHC-CCCEEEEESCGG
T ss_pred             EEecC------CHH-HHHHHHHHHHHhC-CceEEEEEcChh
Confidence            76442      222 2333444444555 566666655543

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=92.59  E-value=0.088  Score=47.62  Aligned_cols=81  Identities=10%  Similarity=0.067  Sum_probs=54.3

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh-----------hhhh
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-----------TQMQ  100 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-----------~~~~  100 (258)
                      ..+++||.||.|++...+...+...+.++|+++.+.+.-+.++....   ...+++.|+.+....           ..+.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p---~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~  164 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDP---ATHHFNEDIRDITLSHQEGVSDEAAAEHIR  164 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCT---TTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCC---CcceeccchhhhhhccccccchhhHHhhhh
Confidence            36899999999999999987787678999999988877666652211   234667887543210           0011


Q ss_pred             hcCCceeEEEecccc
Q 025059          101 EKANQADLVCCFQHL  115 (258)
Q Consensus       101 ~~~~~fD~V~~~~~l  115 (258)
                      .....+|+|+..+..
T Consensus       165 ~~~~~~Dvl~gGpPC  179 (482)
T 3me5_A          165 QHIPEHDVLLAGFPC  179 (482)
T ss_dssp             HHSCCCSEEEEECCC
T ss_pred             hcCCCCCEEEecCCC
Confidence            123468999876543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.58  E-value=0.56  Score=41.48  Aligned_cols=102  Identities=13%  Similarity=0.040  Sum_probs=65.9

Q ss_pred             CCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        32 ~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ..+|+=+|+|. |..+...+......|+++|.+++.++.+++.        .+..+.+|..+.......  .-...|+|+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~--------g~~vi~GDat~~~~L~~a--gi~~A~~vi   73 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESA--GAAKAEVLI   73 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT--------TCCCEESCTTCHHHHHHT--TTTTCSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC--------CCeEEEcCCCCHHHHHhc--CCCccCEEE
Confidence            45688888875 4333333333333899999999998887632        456788998775543222  246789887


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      +..      .+ ......+....+.+.|+..++....+..
T Consensus        74 v~~------~~-~~~n~~i~~~ar~~~p~~~Iiara~~~~  106 (413)
T 3l9w_A           74 NAI------DD-PQTNLQLTEMVKEHFPHLQIIARARDVD  106 (413)
T ss_dssp             ECC------SS-HHHHHHHHHHHHHHCTTCEEEEEESSHH
T ss_pred             ECC------CC-hHHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            644      22 3344556667777889888877755543

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=92.56  E-value=0.37  Score=41.19  Aligned_cols=97  Identities=14%  Similarity=0.085  Sum_probs=61.4

Q ss_pred             cCCCCEEEEEcC--CCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059           29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGc--G~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (258)
                      +.++.+||-.|+  |-|..+..+++....+++++|.+++.++.+++. . .    . ..  .|..+..+.+.+..  ...
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~-g-a----~-~~--~d~~~~~~~~~~~~~~~~~  234 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL-G-A----D-ET--VNYTHPDWPKEVRRLTGGK  234 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-T-C----S-EE--EETTSTTHHHHHHHHTTTT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc-C-C----C-EE--EcCCcccHHHHHHHHhCCC
Confidence            457899999998  456666666665334999999999888887542 1 1    1 12  23333333222211  124


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+...+ .          ..+..+.++|+++|.++..
T Consensus       235 ~~d~vi~~~g-~----------~~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          235 GADKVVDHTG-A----------LYFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             CEEEEEESSC-S----------SSHHHHHHHEEEEEEEEES
T ss_pred             CceEEEECCC-H----------HHHHHHHHhhccCCEEEEE
Confidence            7999987654 2          1356677889999998765

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=92.51  E-value=0.35  Score=41.95  Aligned_cols=100  Identities=15%  Similarity=0.157  Sum_probs=62.1

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (258)
                      .+++.+||=+|+|. |..+..+++. +..+|+++|.+++.++.+++.    +  .. ..+...-....+.+.+.. ..+.
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l----G--a~-~vi~~~~~~~~~~~~i~~~~~gg  263 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF----G--VN-EFVNPKDHDKPIQEVIVDLTDGG  263 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT----T--CC-EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C--Cc-EEEccccCchhHHHHHHHhcCCC
Confidence            45889999999874 6666666665 555899999999988877532    1  11 122111001222222211 2348


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~~i~~  145 (258)
                      +|+|+..-.-          ...+....++|++| |.++..
T Consensus       264 ~D~vid~~g~----------~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          264 VDYSFECIGN----------VSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             BSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCEEEECCCC----------HHHHHHHHHHhhccCCEEEEE
Confidence            9999764421          24577788899997 998876

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=92.46  E-value=0.56  Score=40.54  Aligned_cols=98  Identities=15%  Similarity=0.133  Sum_probs=61.5

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC--Cchhhhhhh-cC
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA  103 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~  103 (258)
                      ..++.+||-+|+|. |..+.++++. +..+|+++|.+++.++.+++.    +.  . ..+  |..+  ..+.+.+.. ..
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga--~-~vi--~~~~~~~~~~~~~~~~~~  260 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----GA--T-DFV--NPNDHSEPISQVLSKMTN  260 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC--C-EEE--CGGGCSSCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CC--c-eEE--eccccchhHHHHHHHHhC
Confidence            45889999999875 5666666665 444899999999998887642    10  1 122  2111  122222211 23


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~~i~~  145 (258)
                      +.+|+|+..-..          ...+....++|++| |.++..
T Consensus       261 ~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          261 GGVDFSLECVGN----------VGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             SCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCEEEECCCC----------HHHHHHHHHHhhcCCcEEEEE
Confidence            479999764421          23567788899999 998875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=92.42  E-value=0.34  Score=41.50  Aligned_cols=98  Identities=12%  Similarity=0.009  Sum_probs=61.3

Q ss_pred             cCCCCEEEEEcCC--CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCC-CCchhhhhhh-cCC
Q 025059           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQMQE-KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG--~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~-~~~  104 (258)
                      ..++.+||-+|++  -|..+..++.....+++++|.+++.++.+++.    +.  . ..  .|.. ...+...+.. ..+
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~----g~--~-~~--~d~~~~~~~~~~~~~~~~~  237 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSI----GG--E-VF--IDFTKEKDIVGAVLKATDG  237 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHT----TC--C-EE--EETTTCSCHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHc----CC--c-eE--EecCccHhHHHHHHHHhCC
Confidence            4588999999983  45555555554334999999998887766542    11  1 11  2433 2233222211 123


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+...+.          ...+..+.++|+++|.++..
T Consensus       238 ~~D~vi~~~g~----------~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          238 GAHGVINVSVS----------EAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             CEEEEEECSSC----------HHHHHHHTTSEEEEEEEEEC
T ss_pred             CCCEEEECCCc----------HHHHHHHHHHHhcCCEEEEE
Confidence            79999775431          24677888999999998865

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=92.21  E-value=0.32  Score=41.50  Aligned_cols=96  Identities=16%  Similarity=0.101  Sum_probs=59.9

Q ss_pred             cCCCCEEEEEcCCC--CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cC
Q 025059           29 SHPYVTVCDLYCGA--GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (258)
Q Consensus        29 ~~~~~~VLDlGcG~--G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~  103 (258)
                      .+++.+||-+|+|.  |..+..+++. +. +++++|.+++.++.+++.-.      . ..+  |..+..+.+.+..  ..
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga------~-~~~--~~~~~~~~~~~~~~~~~  211 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGA------A-YVI--DTSTAPLYETVMELTNG  211 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTC------S-EEE--ETTTSCHHHHHHHHTTT
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCC------c-EEE--eCCcccHHHHHHHHhCC
Confidence            45889999999984  5555666555 55 99999999998888875311      1 122  2222333222211  23


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+|+|+...+.       ...    ....++|++||.++..
T Consensus       212 ~g~Dvvid~~g~-------~~~----~~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          212 IGADAAIDSIGG-------PDG----NELAFSLRPNGHFLTI  242 (340)
T ss_dssp             SCEEEEEESSCH-------HHH----HHHHHTEEEEEEEEEC
T ss_pred             CCCcEEEECCCC-------hhH----HHHHHHhcCCCEEEEE
Confidence            479999765421       212    2334799999999876

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=92.08  E-value=0.45  Score=40.68  Aligned_cols=96  Identities=15%  Similarity=0.043  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCCce
Q 025059           31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~f  106 (258)
                      ++.+||-+|+|. |..+.++++. +..+++++|.+++.++.+++.-.      . ..+  |..+..+.+.+..  ....+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga------~-~~~--~~~~~~~~~~v~~~~~g~g~  237 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA------D-YVI--NPFEEDVVKEVMDITDGNGV  237 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTC------S-EEE--CTTTSCHHHHHHHHTTTSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC------C-EEE--CCCCcCHHHHHHHHcCCCCC
Confidence            789999999964 5556666665 44489999999988887764211      1 122  3322333322221  12469


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|+.....          ...+..+.++|+++|.++..
T Consensus       238 D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          238 DVFLEFSGA----------PKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             EEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            999765421          23567778899999998765

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=91.99  E-value=0.47  Score=40.41  Aligned_cols=98  Identities=12%  Similarity=0.056  Sum_probs=60.7

Q ss_pred             cCCCCEEEEEcC--CCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC-chhhhhhh-cCC
Q 025059           29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQE-KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGc--G~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~-~~~  104 (258)
                      ..++.+||-.|+  |-|..+..+++....+++++|.+++.++.+++.+   +.  . ..+  |..+. .+...+.. ..+
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~---g~--~-~~~--d~~~~~~~~~~~~~~~~~  224 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKF---GF--D-DAF--NYKEESDLTAALKRCFPN  224 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTS---CC--S-EEE--ETTSCSCSHHHHHHHCTT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---CC--c-eEE--ecCCHHHHHHHHHHHhCC
Confidence            457899999997  3455566665553348999999988887775332   11  1 112  33221 22222211 125


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+...+       .    ..+....++|++||.++..
T Consensus       225 ~~d~vi~~~g-------~----~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          225 GIDIYFENVG-------G----KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             CEEEEEESSC-------H----HHHHHHHTTEEEEEEEEEC
T ss_pred             CCcEEEECCC-------H----HHHHHHHHHHhcCCEEEEE
Confidence            7999976542       1    2577788999999998865

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=91.77  E-value=0.9  Score=39.24  Aligned_cols=100  Identities=14%  Similarity=0.077  Sum_probs=61.2

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (258)
                      ..++.+||-+|+|. |..+.++++. +..+|+++|.+++.++.+++.-.      . ..+..+-....+.+.+.. ..+.
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa------~-~vi~~~~~~~~~~~~v~~~~~~g  265 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA------T-DCLNPRELDKPVQDVITELTAGG  265 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC------S-EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC------c-EEEccccccchHHHHHHHHhCCC
Confidence            34789999999874 5666666665 44489999999998888754211      1 122111001122222211 2347


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~~i~~  145 (258)
                      +|+|+..-.-          ...+....++|++| |.++..
T Consensus       266 ~Dvvid~~G~----------~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          266 VDYSLDCAGT----------AQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             BSEEEESSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             ccEEEECCCC----------HHHHHHHHHHhhcCCCEEEEE
Confidence            9999764321          23567788899999 998865

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=91.65  E-value=0.82  Score=39.40  Aligned_cols=95  Identities=12%  Similarity=0.095  Sum_probs=61.5

Q ss_pred             CCCEEEEEc-CCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCce
Q 025059           31 PYVTVCDLY-CGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQA  106 (258)
Q Consensus        31 ~~~~VLDlG-cG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~f  106 (258)
                      ++.+||=.| +|. |..+.++++. +..+++++|.+++.++.+++.    +  .. ..+  |..+ .+.+.+.. ..+.+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l----G--ad-~vi--~~~~-~~~~~v~~~~~~g~  240 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL----G--AH-HVI--DHSK-PLAAEVAALGLGAP  240 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT----T--CS-EEE--CTTS-CHHHHHHTTCSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc----C--CC-EEE--eCCC-CHHHHHHHhcCCCc
Confidence            678999998 554 7777777775 556999999999888877542    1  11 122  2111 22222211 24589


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|+...+          ....+..+.++|+++|.++..
T Consensus       241 Dvvid~~g----------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          241 AFVFSTTH----------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEECSC----------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             eEEEECCC----------chhhHHHHHHHhcCCCEEEEE
Confidence            99976432          224667788899999999875

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=91.60  E-value=0.77  Score=39.65  Aligned_cols=100  Identities=15%  Similarity=0.102  Sum_probs=61.1

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (258)
                      ..++.+||-+|+|. |..+.++++. +..+++++|.+++.++.+++.-.      . ..+..+-....+.+.+.. ..+.
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa------~-~vi~~~~~~~~~~~~~~~~~~~g  261 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA------T-ECVNPQDYKKPIQEVLTEMSNGG  261 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC------S-EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC------c-eEecccccchhHHHHHHHHhCCC
Confidence            45889999999875 6666666665 44489999999998888753210      1 122111001122222211 2347


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~~i~~  145 (258)
                      +|+|+..-..          ...+....++|+++ |.++..
T Consensus       262 ~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          262 VDFSFEVIGR----------LDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             BSEEEECSCC----------HHHHHHHHHHBCTTTCEEEEC
T ss_pred             CcEEEECCCC----------HHHHHHHHHHhhcCCcEEEEe
Confidence            9999764421          23566778899999 998865

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=91.54  E-value=0.39  Score=41.43  Aligned_cols=91  Identities=13%  Similarity=0.066  Sum_probs=56.9

Q ss_pred             CCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecCh---hHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           32 YVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVAT---SGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        32 ~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~---~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      +.+||-+|+|. |..+.++++. +. +++++|.++   +.++.+++.        .++.+  | .+ .+.+.+....+.+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~--------ga~~v--~-~~-~~~~~~~~~~~~~  247 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEET--------KTNYY--N-SS-NGYDKLKDSVGKF  247 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHH--------TCEEE--E-CT-TCSHHHHHHHCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHh--------CCcee--c-hH-HHHHHHHHhCCCC
Confidence            89999999843 4444555544 55 999999998   776666532        22222  3 22 2222221112579


Q ss_pred             eEEEeccccccccCCHHHHHHHH-HHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLL-QNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l-~~i~~~LkpgG~~i~~  145 (258)
                      |+|+...+..          ..+ +.+.++|+++|.++..
T Consensus       248 d~vid~~g~~----------~~~~~~~~~~l~~~G~iv~~  277 (366)
T 2cdc_A          248 DVIIDATGAD----------VNILGNVIPLLGRNGVLGLF  277 (366)
T ss_dssp             EEEEECCCCC----------THHHHHHGGGEEEEEEEEEC
T ss_pred             CEEEECCCCh----------HHHHHHHHHHHhcCCEEEEE
Confidence            9998765321          134 7788999999998876

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=91.50  E-value=0.44  Score=40.96  Aligned_cols=97  Identities=14%  Similarity=0.097  Sum_probs=59.2

Q ss_pred             cCCCCEEEEEcCC--CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG--~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (258)
                      ..++.+||-.|++  -|..+..++.....+++++|.+++.++.+++.    +.  . ..  .|..+..+...+..  ...
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga--~-~~--~d~~~~~~~~~~~~~~~~~  238 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----GA--H-EV--FNHREVNYIDKIKKYVGEK  238 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC--S-EE--EETTSTTHHHHHHHHHCTT
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHc----CC--C-EE--EeCCCchHHHHHHHHcCCC
Confidence            4578999999973  35555555554334899999998887766432    11  1 11  23323233222211  234


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+...+       .    ..+....++|+++|.++..
T Consensus       239 ~~D~vi~~~G-------~----~~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          239 GIDIIIEMLA-------N----VNLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             CEEEEEESCH-------H----HHHHHHHHHEEEEEEEEEC
T ss_pred             CcEEEEECCC-------h----HHHHHHHHhccCCCEEEEE
Confidence            7999976542       1    2456678899999998875

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=91.36  E-value=0.38  Score=40.77  Aligned_cols=120  Identities=13%  Similarity=0.127  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCCCCccHHHHH----Hc-CCC--eEEEEecCh--------hHHHHHHHHH-Hh----cCCCceeEEEEcCC
Q 025059           31 PYVTVCDLYCGAGVDVDKWE----TA-LIA--NYIGIDVAT--------SGIGEARDTW-EN----QRKNFIAEFFEADP   90 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~----~~-~~~--~v~gvD~s~--------~~l~~a~~~~-~~----~~~~~~~~~~~~d~   90 (258)
                      +..+|||+|-|+|-+.....    +. +..  +++.+|..+        ..+....+.+ ..    ........+..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            45789999999997654322    12 222  456666421        1122222212 11    11122456777775


Q ss_pred             CCCchhhhhhh-cCCceeEEEec-cccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHH
Q 025059           91 CAENFETQMQE-KANQADLVCCF-QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (258)
Q Consensus        91 ~~~~~~~~~~~-~~~~fD~V~~~-~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~  158 (258)
                      ..     .++. ...++|+|..- |+...  .+.---..+++.|+++++|||.+. |......+.+.+.+
T Consensus       176 ~~-----~l~~l~~~~~Da~flDgFsP~k--NPeLWs~e~f~~l~~~~~pgg~la-TYtaag~VRR~L~~  237 (308)
T 3vyw_A          176 RK-----RIKEVENFKADAVFHDAFSPYK--NPELWTLDFLSLIKERIDEKGYWV-SYSSSLSVRKSLLT  237 (308)
T ss_dssp             HH-----HGGGCCSCCEEEEEECCSCTTT--SGGGGSHHHHHHHHTTEEEEEEEE-ESCCCHHHHHHHHH
T ss_pred             HH-----HHhhhcccceeEEEeCCCCccc--CcccCCHHHHHHHHHHhCCCcEEE-EEeCcHHHHHHHHH
Confidence            32     2221 34579999653 22111  000012679999999999999875 44444555555543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=91.33  E-value=0.38  Score=41.06  Aligned_cols=98  Identities=16%  Similarity=0.114  Sum_probs=63.5

Q ss_pred             hcCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cC
Q 025059           28 YSHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~  103 (258)
                      ...++.+||=+|+|. |..+.++++. +..+++++|.+++.++.+++.-.      . ..+..+  . .+.+.+..  ..
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa------~-~~i~~~--~-~~~~~v~~~t~g  237 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGA------D-AAVKSG--A-GAADAIRELTGG  237 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTC------S-EEEECS--T-THHHHHHHHHGG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC------C-EEEcCC--C-cHHHHHHHHhCC
Confidence            356899999999875 6666777665 46699999999998888764311      1 122221  1 22222111  23


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+|+|+-.-+-          ...+....++|++||.++..
T Consensus       238 ~g~d~v~d~~G~----------~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          238 QGATAVFDFVGA----------QSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             GCEEEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCeEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            479999764421          23677788899999999876

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=91.09  E-value=0.45  Score=40.66  Aligned_cols=99  Identities=16%  Similarity=0.192  Sum_probs=61.0

Q ss_pred             hcCCCCEEEEEcCCC--CccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cC
Q 025059           28 YSHPYVTVCDLYCGA--GVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KA  103 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~--G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~  103 (258)
                      -..++.+||-.|+|.  |..+..++... ..+++++|.+++.++.+++. . .    . ..+  |..+......+.. ..
T Consensus       167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~-g-~----~-~~~--~~~~~~~~~~~~~~~~  237 (347)
T 1jvb_A          167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA-G-A----D-YVI--NASMQDPLAEIRRITE  237 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH-T-C----S-EEE--ETTTSCHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-C-C----C-EEe--cCCCccHHHHHHHHhc
Confidence            345889999999984  44444554443 34899999999888877542 1 1    1 122  2222222111111 22


Q ss_pred             -CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          104 -NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 -~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                       +.+|+|+...+-          ...+....++|+++|.++..
T Consensus       238 ~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          238 SKGVDAVIDLNNS----------EKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             TSCEEEEEESCCC----------HHHHTTGGGGEEEEEEEEEC
T ss_pred             CCCceEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence             589999765421          23567788899999998875

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.90  E-value=4.1  Score=33.26  Aligned_cols=112  Identities=13%  Similarity=-0.020  Sum_probs=67.0

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecC------------hhHHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVA------------TSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s------------~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (258)
                      .+.+||=-|++.|.   .+..++..+. +|+.+|.+            ...++.+.......+  .++.++.+|+.+..-
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence            35678888876652   2333444465 89999987            666666655554432  378899999977432


Q ss_pred             hh----hhhhcCCceeEEEecccccccc--CCHHHH-----------HHHHHHHHhcccCCcEEEEE
Q 025059           96 ET----QMQEKANQADLVCCFQHLQMCF--ETEERA-----------RRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        96 ~~----~~~~~~~~fD~V~~~~~l~~~~--~~~~~~-----------~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..    ......+..|+++.+.+....-  .+.+..           -.+++.+...|+.+|.++.+
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  152 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT  152 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence            11    1111235789998876543210  122222           23455677777888887766

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=90.84  E-value=3.3  Score=33.46  Aligned_cols=109  Identities=13%  Similarity=0.051  Sum_probs=67.2

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhcC
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (258)
                      .+.++|=.|++.|.   .+..+++.+. +|+.+|.+++.++...+.+.     .++.++.+|+.+..-..    ......
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            36788888876652   2333444465 89999999988877666552     26889999997743211    111223


Q ss_pred             CceeEEEeccccccc----cCCHHHHH-----------HHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQMC----FETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~----~~~~~~~~-----------~~l~~i~~~LkpgG~~i~~  145 (258)
                      +..|+++.+.+....    -.+.++.+           .+.+.+...++.+|.++.+
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i  137 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT  137 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            689999887654321    01233332           3445666777778887766

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=90.70  E-value=0.47  Score=41.58  Aligned_cols=59  Identities=5%  Similarity=-0.050  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc--------CCCeEEEEecChhHHHHHHHHHHh
Q 025059           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA--------LIANYIGIDVATSGIGEARDTWEN   76 (258)
Q Consensus        18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~--------~~~~v~gvD~s~~~l~~a~~~~~~   76 (258)
                      .|+...+.....+....|+|+|.|+|.++..+++.        ...+|+.||+|+...+.-++++..
T Consensus        67 ~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  133 (387)
T 1zkd_A           67 LWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  133 (387)
T ss_dssp             HHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence            66655554444455568999999999998777653        123899999999998877776654

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=90.48  E-value=0.37  Score=40.59  Aligned_cols=87  Identities=11%  Similarity=-0.070  Sum_probs=56.4

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      .+++.+||=+|+|. |..+.++++. +. +++++| +++.++.+++.        .+..+.-|     . +.+   ...+
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l--------Ga~~v~~d-----~-~~v---~~g~  200 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR--------GVRHLYRE-----P-SQV---TQKY  200 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH--------TEEEEESS-----G-GGC---CSCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc--------CCCEEEcC-----H-HHh---CCCc
Confidence            34899999999964 6666777665 55 999999 99888888653        22222212     1 111   5689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|+-.-+-           ..+....++|+++|.++..
T Consensus       201 Dvv~d~~g~-----------~~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          201 FAIFDAVNS-----------QNAAALVPSLKANGHIICI  228 (315)
T ss_dssp             EEEECC------------------TTGGGEEEEEEEEEE
T ss_pred             cEEEECCCc-----------hhHHHHHHHhcCCCEEEEE
Confidence            999653311           1225578899999999876

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=90.31  E-value=0.076  Score=45.56  Aligned_cols=95  Identities=15%  Similarity=0.015  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCCC-CccHHHHHHcC--CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC-CchhhhhhhcCCce
Q 025059           31 PYVTVCDLYCGA-GVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~f  106 (258)
                      ++.+||-+|+|. |..+.++++..  ..+++++|.+++.++.+++.-.      . ..+  |..+ ......+. ....+
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa------~-~vi--~~~~~~~~~~~~~-~g~g~  239 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGA------D-YVS--EMKDAESLINKLT-DGLGA  239 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTC------S-EEE--CHHHHHHHHHHHH-TTCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCC------C-EEe--ccccchHHHHHhh-cCCCc
Confidence            789999999974 55666666553  4589999999998888765311      1 111  1101 11111111 13379


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|+..-..          ...+..+.++|++||.++..
T Consensus       240 D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          240 SIAIDLVGT----------EETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             EEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             cEEEECCCC----------hHHHHHHHHHhhcCCEEEEe
Confidence            999765421          23567778899999998875

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=90.30  E-value=0.58  Score=40.63  Aligned_cols=100  Identities=20%  Similarity=0.115  Sum_probs=60.7

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCC-CCchhhhhhh--cC
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQMQE--KA  103 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~--~~  103 (258)
                      ..++.+||-+|+|. |..+.++++... .+++++|.+++.++.+++.    +.  . ..+..+.. +..+.+.+..  ..
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga--~-~vi~~~~~~~~~~~~~v~~~~~g  265 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GA--D-LTLNRRETSVEERRKAIMDITHG  265 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TC--S-EEEETTTSCHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc----CC--c-EEEeccccCcchHHHHHHHHhCC
Confidence            46789999999764 556666666533 5999999999888877632    10  1 22221100 1122222211  12


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+|+|+..-..          ...+....++|+++|.++..
T Consensus       266 ~g~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~~  297 (380)
T 1vj0_A          266 RGADFILEATGD----------SRALLEGSELLRRGGFYSVA  297 (380)
T ss_dssp             SCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             CCCcEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            369999765421          12466677899999998865

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=90.22  E-value=1.4  Score=37.55  Aligned_cols=95  Identities=16%  Similarity=0.115  Sum_probs=59.3

Q ss_pred             CCCEEEEE-cCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcee
Q 025059           31 PYVTVCDL-YCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (258)
Q Consensus        31 ~~~~VLDl-GcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD  107 (258)
                      ++.+||=. |+|. |..+.++++....+++++|.+++.++.+++.-.      . ..+  |..+ .+.+.+.. ....+|
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa------~-~vi--~~~~-~~~~~~~~~~~~g~D  219 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGA------D-IVL--NHKE-SLLNQFKTQGIELVD  219 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTC------S-EEE--CTTS-CHHHHHHHHTCCCEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC------c-EEE--ECCc-cHHHHHHHhCCCCcc
Confidence            68999999 4553 556666666533499999999988888876311      1 122  2111 22222211 345799


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+...+          ....+..+.++|+++|.++..
T Consensus       220 vv~d~~g----------~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          220 YVFCTFN----------TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEEESSC----------HHHHHHHHHHHEEEEEEEEES
T ss_pred             EEEECCC----------chHHHHHHHHHhccCCEEEEE
Confidence            9976432          234567788899999999754

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=90.15  E-value=6.4  Score=31.74  Aligned_cols=113  Identities=5%  Similarity=-0.029  Sum_probs=67.8

Q ss_pred             CCCEEEEEcCC--CCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh----hhh
Q 025059           31 PYVTVCDLYCG--AGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQE  101 (258)
Q Consensus        31 ~~~~VLDlGcG--~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~  101 (258)
                      .+.+||=.|++  .|.   .+..++..+. +|+.++.++...+.+.+.....+. .++.++.+|+.+..-...    +..
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHH
Confidence            35678888876  332   3344444565 899999887666665555443321 168899999987542111    112


Q ss_pred             cCCceeEEEecccccc--------ccCCHHHHH-----------HHHHHHHhcccCCcEEEEE
Q 025059          102 KANQADLVCCFQHLQM--------CFETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~--------~~~~~~~~~-----------~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+..|+++.+.+...        .-.+.+...           .+++.+...++++|.++.+
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i  146 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTL  146 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEE
Confidence            2357899887765421        012233332           3556777788888888776

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=90.14  E-value=2.1  Score=35.29  Aligned_cols=84  Identities=10%  Similarity=-0.055  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCCCC---ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC-chh----hhhhhc
Q 025059           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFE----TQMQEK  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~----~~~~~~  102 (258)
                      .+.+||=.|++.|   ..+..++..+. +|+.++.++..++.+.+.+.... +.++.++.+|+.+. .-.    ..+...
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            3567887776655   12333444465 89999999988887777665543 22688999999875 311    112222


Q ss_pred             CCceeEEEeccccc
Q 025059          103 ANQADLVCCFQHLQ  116 (258)
Q Consensus       103 ~~~fD~V~~~~~l~  116 (258)
                      .+..|+++.+.+..
T Consensus        89 ~g~iD~lv~nAg~~  102 (311)
T 3o26_A           89 FGKLDILVNNAGVA  102 (311)
T ss_dssp             HSSCCEEEECCCCC
T ss_pred             CCCCCEEEECCccc
Confidence            36899998877653

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=89.80  E-value=2.1  Score=32.45  Aligned_cols=106  Identities=14%  Similarity=0.041  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ...-|||+|-|+|..-..+... +...++.+|-.-.+-..      ....  .-.++.+|+.+.-- .....-..+.-++
T Consensus        40 ~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~------~~P~--~e~~ilGdi~~tL~-~~~~r~g~~a~La  110 (174)
T 3iht_A           40 LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPD------STPP--EAQLILGDIRETLP-ATLERFGATASLV  110 (174)
T ss_dssp             CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGG------GCCC--GGGEEESCHHHHHH-HHHHHHCSCEEEE
T ss_pred             CCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCC------CCCc--hHheecccHHHHHH-HHHHhcCCceEEE
Confidence            4456999999999877777555 45689999843211000      0000  12355555422100 0000012344444


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+-.+.++--.+......+-.-+..+|.|||+++-.
T Consensus       111 HaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~  146 (174)
T 3iht_A          111 HADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSS  146 (174)
T ss_dssp             EECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             EeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence            444444431111122344555688999999998754

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=89.71  E-value=0.33  Score=41.82  Aligned_cols=97  Identities=14%  Similarity=0.055  Sum_probs=60.2

Q ss_pred             hcCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC-chhhhhhhcCC
Q 025059           28 YSHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEKAN  104 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~  104 (258)
                      -.+++.+||-+|+|. |..+.++++. +. +++++|.+++.++.+++.-  .    . ..+..+  +. .+...+   .+
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~lG--a----~-~v~~~~--~~~~~~~~~---~~  242 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMG--A----D-HYIATL--EEGDWGEKY---FD  242 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHT--C----S-EEEEGG--GTSCHHHHS---CS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcC--C----C-EEEcCc--CchHHHHHh---hc
Confidence            355899999999864 5556666665 55 8999999999888886521  1    1 122211  11 222222   15


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+.......        ...+....++|++||.++..
T Consensus       243 ~~D~vid~~g~~~--------~~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          243 TFDLIVVCASSLT--------DIDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             CEEEEEECCSCST--------TCCTTTGGGGEEEEEEEEEC
T ss_pred             CCCEEEECCCCCc--------HHHHHHHHHHhcCCCEEEEe
Confidence            7999976543200        12345567899999998765

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=89.67  E-value=1.3  Score=37.68  Aligned_cols=96  Identities=15%  Similarity=0.072  Sum_probs=60.9

Q ss_pred             cCCCCEEEEEcCC--CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG--~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (258)
                      .+++.+||=.|++  -|..+..+++....+++++|.+++.++.+++.-       ....+..+   ..+.+.+..  ...
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g-------a~~v~~~~---~~~~~~v~~~~~~~  226 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVG-------ADIVLPLE---EGWAKAVREATGGA  226 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHT-------CSEEEESS---TTHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcC-------CcEEecCc---hhHHHHHHHHhCCC
Confidence            3478999999973  366666666654349999999999888776531       11222222   223222211  233


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+...+.           ..+....++|++||.++..
T Consensus       227 g~Dvvid~~g~-----------~~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          227 GVDMVVDPIGG-----------PAFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             CEEEEEESCC-------------CHHHHHHTEEEEEEEEEC
T ss_pred             CceEEEECCch-----------hHHHHHHHhhcCCCEEEEE
Confidence            79999765431           1466778899999999876

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=89.67  E-value=0.47  Score=40.47  Aligned_cols=95  Identities=15%  Similarity=0.076  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcee
Q 025059           31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (258)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD  107 (258)
                      ++.+||-+|+|. |..+.++++. +..+++++|.+++.++.+++.  .     . ..  .|..+..+.+.+.. ....+|
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l--a-----~-~v--~~~~~~~~~~~~~~~~~~g~D  233 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY--A-----D-RL--VNPLEEDLLEVVRRVTGSGVE  233 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT--C-----S-EE--ECTTTSCHHHHHHHHHSSCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--H-----H-hc--cCcCccCHHHHHHHhcCCCCC
Confidence            789999999864 5556666665 434899999998777666432  1     1 11  23222233222211 134799


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+....-          ...++...++|+++|.++..
T Consensus       234 ~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          234 VLLEFSGN----------EAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             EEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            99765421          23466778899999998765

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.62  E-value=1.9  Score=32.93  Aligned_cols=101  Identities=14%  Similarity=0.116  Sum_probs=58.1

Q ss_pred             CCEEEEEcCCC-CccH-HHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           32 YVTVCDLYCGA-GVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        32 ~~~VLDlGcG~-G~~~-~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      +.+|+=+|||. |..+ ..+... +. .|+++|.+++.++.+++    .    .+..+.+|..+........ .-..+|+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~----~----g~~~~~gd~~~~~~l~~~~-~~~~ad~  108 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRS----E----GRNVISGDATDPDFWERIL-DTGHVKL  108 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHH----T----TCCEEECCTTCHHHHHTBC-SCCCCCE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHH----C----CCCEEEcCCCCHHHHHhcc-CCCCCCE
Confidence            46899999885 3333 333334 55 89999999987766543    1    3456777875533211100 1346898


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |++..      .+..... .+....+.+.|++.++....+.
T Consensus       109 vi~~~------~~~~~~~-~~~~~~~~~~~~~~ii~~~~~~  142 (183)
T 3c85_A          109 VLLAM------PHHQGNQ-TALEQLQRRNYKGQIAAIAEYP  142 (183)
T ss_dssp             EEECC------SSHHHHH-HHHHHHHHTTCCSEEEEEESSH
T ss_pred             EEEeC------CChHHHH-HHHHHHHHHCCCCEEEEEECCH
Confidence            87643      2233233 3334556667788887765543

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=89.41  E-value=1.7  Score=36.68  Aligned_cols=97  Identities=21%  Similarity=0.163  Sum_probs=60.2

Q ss_pred             cCCCCEEEEEcC--CCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059           29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGc--G~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (258)
                      .+++.+||-.|+  |-|..+..++.....+++++|.+++.++.+++. . .    . ..  .|..+......+..  ...
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~-g-~----~-~~--~d~~~~~~~~~i~~~~~~~  213 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL-G-C----H-HT--INYSTQDFAEVVREITGGK  213 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-T-C----S-EE--EETTTSCHHHHHHHHHTTC
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-C-C----C-EE--EECCCHHHHHHHHHHhCCC
Confidence            457899999995  345555555554334999999998888777542 1 1    1 11  23333333222211  234


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+...+-           ..+..+.++|++||.++..
T Consensus       214 ~~d~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~  243 (333)
T 1wly_A          214 GVDVVYDSIGK-----------DTLQKSLDCLRPRGMCAAY  243 (333)
T ss_dssp             CEEEEEECSCT-----------TTHHHHHHTEEEEEEEEEC
T ss_pred             CCeEEEECCcH-----------HHHHHHHHhhccCCEEEEE
Confidence            79999765431           2466778899999998765

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=89.37  E-value=2.5  Score=35.79  Aligned_cols=98  Identities=9%  Similarity=0.030  Sum_probs=59.4

Q ss_pred             cCCCCEEEEEcCCCC-ccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh--hcCC
Q 025059           29 SHPYVTVCDLYCGAG-VDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G-~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~  104 (258)
                      ..++.+||=.|+|.. ..+..+++. +...++++|.+++-++.|++.-.      . ..+..  .+....+...  ....
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa------~-~~i~~--~~~~~~~~~~~~~~~~  228 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGA------M-QTFNS--SEMSAPQMQSVLRELR  228 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC------S-EEEET--TTSCHHHHHHHHGGGC
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCC------e-EEEeC--CCCCHHHHHHhhcccC
Confidence            458899999999763 344444444 55678999999998887764311      1 22222  1222211111  1235


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+..-+          ....+....++|++||.+++.
T Consensus       229 g~d~v~d~~G----------~~~~~~~~~~~l~~~G~~v~~  259 (346)
T 4a2c_A          229 FNQLILETAG----------VPQTVELAVEIAGPHAQLALV  259 (346)
T ss_dssp             SSEEEEECSC----------SHHHHHHHHHHCCTTCEEEEC
T ss_pred             Cccccccccc----------ccchhhhhhheecCCeEEEEE
Confidence            6788865432          124566777899999999876

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=89.36  E-value=0.88  Score=38.44  Aligned_cols=96  Identities=16%  Similarity=0.128  Sum_probs=61.1

Q ss_pred             cCCCCEEEEEc-CC-CCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cC
Q 025059           29 SHPYVTVCDLY-CG-AGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (258)
Q Consensus        29 ~~~~~~VLDlG-cG-~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~  103 (258)
                      .+++.+||=.| +| -|..+..+++. +. +++++|.+++.++.+++.-  .    . ..+  |..+..+.+.+..  ..
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~G--a----~-~~~--~~~~~~~~~~~~~~~~~  207 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALG--A----W-ETI--DYSHEDVAKRVLELTDG  207 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHT--C----S-EEE--ETTTSCHHHHHHHHTTT
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC--C----C-EEE--eCCCccHHHHHHHHhCC
Confidence            45789999998 33 35556666555 55 9999999999888876431  1    1 122  2222333322221  23


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+|+|+...+.           ..+....++|++||.++..
T Consensus       208 ~g~Dvvid~~g~-----------~~~~~~~~~l~~~G~iv~~  238 (325)
T 3jyn_A          208 KKCPVVYDGVGQ-----------DTWLTSLDSVAPRGLVVSF  238 (325)
T ss_dssp             CCEEEEEESSCG-----------GGHHHHHTTEEEEEEEEEC
T ss_pred             CCceEEEECCCh-----------HHHHHHHHHhcCCCEEEEE
Confidence            479999765432           2466778899999999876

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=89.33  E-value=4.1  Score=33.33  Aligned_cols=112  Identities=13%  Similarity=-0.040  Sum_probs=65.4

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecCh-hHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhc
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVAT-SGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~  102 (258)
                      .+.++|=-|++.|.   .+..++..+. +|+.+|... ..++...+.+...+  .++.++.+|+.+..-..    .....
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVEA  106 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            57789988877652   2334444465 788886554 55555555554432  27889999997743211    11112


Q ss_pred             CCceeEEEeccccccc----cCCHHHH-----------HHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQHLQMC----FETEERA-----------RRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~----~~~~~~~-----------~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+..|+++.+.+....    -.+.++.           -.+++.+...|+++|.++.+
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i  164 (271)
T 3v2g_A          107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI  164 (271)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            3578999887654211    0122322           23456667778888887766

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=89.31  E-value=1.1  Score=38.29  Aligned_cols=97  Identities=11%  Similarity=-0.059  Sum_probs=58.9

Q ss_pred             cCCCCEEEEEcC--CCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059           29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGc--G~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (258)
                      ..++.+||-.|+  |-|..+..++.....+++++|.+++.++.+++. . .    . ..  .|..+..+.+.+..  ...
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~-g-~----~-~~--~~~~~~~~~~~~~~~~~~~  230 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL-G-A----A-AG--FNYKKEDFSEATLKFTKGA  230 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-T-C----S-EE--EETTTSCHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-C-C----c-EE--EecCChHHHHHHHHHhcCC
Confidence            347899999984  335555555554334899999999888877432 1 1    1 11  23323333222211  234


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+...+-           ..+....++|++||.++..
T Consensus       231 ~~d~vi~~~G~-----------~~~~~~~~~l~~~G~iv~~  260 (354)
T 2j8z_A          231 GVNLILDCIGG-----------SYWEKNVNCLALDGRWVLY  260 (354)
T ss_dssp             CEEEEEESSCG-----------GGHHHHHHHEEEEEEEEEC
T ss_pred             CceEEEECCCc-----------hHHHHHHHhccCCCEEEEE
Confidence            79999765532           1355667889999998876

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=89.21  E-value=4.1  Score=33.73  Aligned_cols=111  Identities=10%  Similarity=-0.091  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCCCC-----ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhh
Q 025059           31 PYVTVCDLYCGAG-----VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQE  101 (258)
Q Consensus        31 ~~~~VLDlGcG~G-----~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~  101 (258)
                      .+.+||=.|++.|     ..+..+++.+. +|+.++.++...+.+.+.....+   ++.++.+|+.+..-..    ....
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHH
Confidence            4678888887633     23344455565 89999988765555444433332   5788999997743211    1122


Q ss_pred             cCCceeEEEecccccc--------ccCCHHHH-----------HHHHHHHHhcccCCcEEEEE
Q 025059          102 KANQADLVCCFQHLQM--------CFETEERA-----------RRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~--------~~~~~~~~-----------~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+..|+++.+.+...        .-.+.++.           ..+++.+...|+.+|.++.+
T Consensus       106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~i  168 (293)
T 3grk_A          106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTL  168 (293)
T ss_dssp             HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            3468999988765432        01122322           23445666677778888766

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=89.15  E-value=0.8  Score=39.24  Aligned_cols=98  Identities=10%  Similarity=-0.076  Sum_probs=60.3

Q ss_pred             cCCC--CEEEEEcCC--CCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-c
Q 025059           29 SHPY--VTVCDLYCG--AGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-K  102 (258)
Q Consensus        29 ~~~~--~~VLDlGcG--~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~  102 (258)
                      ..++  .+||-.|++  -|..+..++.. +..+++++|.+++.++.+++.+   +.  . ..  .|..+..+...+.. .
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~---g~--~-~~--~d~~~~~~~~~~~~~~  227 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL---GF--D-AA--INYKKDNVAEQLRESC  227 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS---CC--S-EE--EETTTSCHHHHHHHHC
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc---CC--c-eE--EecCchHHHHHHHHhc
Confidence            4578  999999983  34555555554 4348999999987777665422   11  1 11  23333333222211 1


Q ss_pred             CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+.+|+|+...+       .    ..+....++|++||.++..
T Consensus       228 ~~~~d~vi~~~G-------~----~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          228 PAGVDVYFDNVG-------G----NISDTVISQMNENSHIILC  259 (357)
T ss_dssp             TTCEEEEEESCC-------H----HHHHHHHHTEEEEEEEEEC
T ss_pred             CCCCCEEEECCC-------H----HHHHHHHHHhccCcEEEEE
Confidence            237999976542       1    4567788899999998865

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=89.14  E-value=0.75  Score=38.86  Aligned_cols=96  Identities=14%  Similarity=0.137  Sum_probs=59.6

Q ss_pred             cCCCCEEEEEcC--CCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cC
Q 025059           29 SHPYVTVCDLYC--GAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (258)
Q Consensus        29 ~~~~~~VLDlGc--G~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~  103 (258)
                      .+++.+||-.|+  |-|..+..++.. +. +++++|.+++.++.+++.  ..    . ..  .|..+......+..  ..
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~--g~----~-~~--~~~~~~~~~~~~~~~~~~  207 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA--GA----W-QV--INYREEDLVERLKEITGG  207 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH--TC----S-EE--EETTTSCHHHHHHHHTTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc--CC----C-EE--EECCCccHHHHHHHHhCC
Confidence            447899999994  335555555544 55 899999998888877652  11    1 11  23333333222211  13


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+|+|+...+ .          ..+..+.++|++||.++..
T Consensus       208 ~~~D~vi~~~g-~----------~~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          208 KKVRVVYDSVG-R----------DTWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             CCEEEEEECSC-G----------GGHHHHHHTEEEEEEEEEC
T ss_pred             CCceEEEECCc-h----------HHHHHHHHHhcCCCEEEEE
Confidence            46999987653 1          2467778899999998765

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=88.85  E-value=0.34  Score=40.66  Aligned_cols=63  Identities=19%  Similarity=0.212  Sum_probs=40.5

Q ss_pred             eeEEEEcCCCCCchhhhhhhcCCceeEEEecccccccc--C--------------CHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           82 IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCF--E--------------TEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        82 ~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~--~--------------~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +..++++|+.+  ....+  ++++||+|++.--....-  .              ....+..++.++.++|+|||.+++.
T Consensus        21 ~~~i~~gD~~~--~l~~l--~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~   96 (297)
T 2zig_A           21 VHRLHVGDARE--VLASF--PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV   96 (297)
T ss_dssp             CEEEEESCHHH--HHTTS--CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEECcHHH--HHhhC--CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            56889999743  11112  467999998864321100  0              0112456788999999999999888


Q ss_pred             EcC
Q 025059          146 TPD  148 (258)
Q Consensus       146 ~~~  148 (258)
                      ..+
T Consensus        97 ~~d   99 (297)
T 2zig_A           97 VGD   99 (297)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            664

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=88.84  E-value=8.6  Score=31.66  Aligned_cols=112  Identities=13%  Similarity=0.044  Sum_probs=65.4

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhH-HHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhc
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSG-IGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~  102 (258)
                      .+.+||=.|++.|.   .+..++..+. +|+.+|.++.. .+.+.+.....  +.++.++.+|+.+..-..    .....
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKE--GVKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTT--TCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35688888876652   2333444455 89999988753 33344333333  237889999997743211    11122


Q ss_pred             CCceeEEEecccccccc-----CCHHHH-----------HHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQHLQMCF-----ETEERA-----------RRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~-----~~~~~~-----------~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+..|+++.+.+.....     .+.++.           -.+++.+...|+.+|.++.+
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i  181 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT  181 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence            35789998775442211     123333           34556777788888987766

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=88.57  E-value=1.1  Score=38.53  Aligned_cols=97  Identities=12%  Similarity=0.006  Sum_probs=60.9

Q ss_pred             cCCCCEEEEEc-CC-CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059           29 SHPYVTVCDLY-CG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlG-cG-~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (258)
                      .+++.+||-.| +| -|..+..+++....+++++|.+++.++.+++.    +  .. ..+  |..+..+.+.+.. ....
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~----G--a~-~~~--~~~~~~~~~~~~~~~~~g  231 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSL----G--CD-RPI--NYKTEPVGTVLKQEYPEG  231 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----T--CS-EEE--ETTTSCHHHHHHHHCTTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc----C--Cc-EEE--ecCChhHHHHHHHhcCCC
Confidence            45889999999 34 46666666665434899999998888777642    1  11 122  2222223222211 2357


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+|+...+      .     ..+..+.++|+++|.++..
T Consensus       232 ~D~vid~~g------~-----~~~~~~~~~l~~~G~iv~~  260 (362)
T 2c0c_A          232 VDVVYESVG------G-----AMFDLAVDALATKGRLIVI  260 (362)
T ss_dssp             EEEEEECSC------T-----HHHHHHHHHEEEEEEEEEC
T ss_pred             CCEEEECCC------H-----HHHHHHHHHHhcCCEEEEE
Confidence            999976542      1     3567788899999998776

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=88.35  E-value=7.5  Score=31.35  Aligned_cols=81  Identities=7%  Similarity=-0.109  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCCCCccHH----HHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhc
Q 025059           31 PYVTVCDLYCGAGVDVD----KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~----~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~  102 (258)
                      .+.+||=.|++.| ...    .++..+. +|+.+|.++..++...+.+...+  .++.++.+|+.+..-..    .+...
T Consensus        28 ~~k~vlITGas~g-IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           28 SGQVAVVTGASRG-IGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAA  103 (262)
T ss_dssp             TTCEEEESSTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHh
Confidence            4678888886654 333    3344455 89999999988888777765542  27889999997643211    11122


Q ss_pred             CCceeEEEecccc
Q 025059          103 ANQADLVCCFQHL  115 (258)
Q Consensus       103 ~~~fD~V~~~~~l  115 (258)
                      .+..|+++.+.+.
T Consensus       104 ~g~id~lv~~Ag~  116 (262)
T 3rkr_A          104 HGRCDVLVNNAGV  116 (262)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            3578999887665

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=87.83  E-value=1.4  Score=39.08  Aligned_cols=56  Identities=20%  Similarity=0.084  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc----C--CCeEEEEecChhHHHHHHHHHHh
Q 025059           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA----L--IANYIGIDVATSGIGEARDTWEN   76 (258)
Q Consensus        18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~----~--~~~v~gvD~s~~~l~~a~~~~~~   76 (258)
                      .|+...+.+.-   ...|+|+|.|+|.++..+++.    .  ..+++.|++|+...+..++++..
T Consensus       127 ~~~~~~~~~~g---~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          127 RPVAQALDASG---TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             HHHHHHHHHHT---CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             HHHHHHHHhcC---CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            66665554432   479999999999988777543    1  34899999999999888887764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=87.79  E-value=1.7  Score=37.18  Aligned_cols=97  Identities=11%  Similarity=-0.003  Sum_probs=60.6

Q ss_pred             cCCCCEEEEEcC-C-CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGc-G-~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (258)
                      .+++.+||-.|+ | -|..+..+++....+++++|.+++.++.+++.-.      . ..+  |..+..+...+.. ....
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa------~-~~~--~~~~~~~~~~~~~~~~~g  235 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGA------K-RGI--NYRSEDFAAVIKAETGQG  235 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC------S-EEE--ETTTSCHHHHHHHHHSSC
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC------C-EEE--eCCchHHHHHHHHHhCCC
Confidence            348899999953 3 3556666666544489999999998888765311      1 122  2222333222211 2457


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+|+...+-           ..+....++|+++|.++..
T Consensus       236 ~Dvvid~~g~-----------~~~~~~~~~l~~~G~iv~~  264 (353)
T 4dup_A          236 VDIILDMIGA-----------AYFERNIASLAKDGCLSII  264 (353)
T ss_dssp             EEEEEESCCG-----------GGHHHHHHTEEEEEEEEEC
T ss_pred             ceEEEECCCH-----------HHHHHHHHHhccCCEEEEE
Confidence            9999875532           1456677899999998875

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=87.64  E-value=8.5  Score=32.23  Aligned_cols=84  Identities=13%  Similarity=0.012  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcC
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~  103 (258)
                      .+.+||=.|++.|.   .+..++..+. +|++++.++..++.+.+.+...+.+.++.++.+|+.+..-.    .......
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            35688888877652   2233344465 89999999998888777766543333688999999774311    1112234


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      +..|+++.+.+.
T Consensus        86 g~id~lv~nAg~   97 (319)
T 3ioy_A           86 GPVSILCNNAGV   97 (319)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            688999887764

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=87.56  E-value=3.9  Score=30.09  Aligned_cols=101  Identities=7%  Similarity=-0.066  Sum_probs=58.1

Q ss_pred             CCEEEEEcCCCCccHHHHH----HcCCCeEEEEecCh-hHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           32 YVTVCDLYCGAGVDVDKWE----TALIANYIGIDVAT-SGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~----~~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..+|+=+|+|.  ....++    ..+. .++.+|.++ +..+......+ .    .+.++.+|..+.......  .-...
T Consensus         3 ~~~vlI~G~G~--vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~-~----~~~~i~gd~~~~~~l~~a--~i~~a   72 (153)
T 1id1_A            3 KDHFIVCGHSI--LAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG-D----NADVIPGDSNDSSVLKKA--GIDRC   72 (153)
T ss_dssp             CSCEEEECCSH--HHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC-T----TCEEEESCTTSHHHHHHH--TTTTC
T ss_pred             CCcEEEECCCH--HHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhc-C----CCeEEEcCCCCHHHHHHc--ChhhC
Confidence            34677777753  333333    3344 899999974 44444333221 1    467889998664332111  23578


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |+|++..      . .......+....+.+.|...++....+.
T Consensus        73 d~vi~~~------~-~d~~n~~~~~~a~~~~~~~~ii~~~~~~  108 (153)
T 1id1_A           73 RAILALS------D-NDADNAFVVLSAKDMSSDVKTVLAVSDS  108 (153)
T ss_dssp             SEEEECS------S-CHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred             CEEEEec------C-ChHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            8887653      1 2234556666777777877777655443

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=87.43  E-value=6  Score=31.88  Aligned_cols=83  Identities=19%  Similarity=0.096  Sum_probs=53.9

Q ss_pred             CCCEEEEEcC-CCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhc
Q 025059           31 PYVTVCDLYC-GAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK  102 (258)
Q Consensus        31 ~~~~VLDlGc-G~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~  102 (258)
                      .+.+||=.|+ |.|.   .+..++..+. +|+.+|.++..++.+.+.+.... ..++.++.+|+.+..-..    .....
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            3567888887 5542   2344444565 89999999988888777765432 227899999997743211    11122


Q ss_pred             CCceeEEEecccc
Q 025059          103 ANQADLVCCFQHL  115 (258)
Q Consensus       103 ~~~fD~V~~~~~l  115 (258)
                      .+..|+++.+.+.
T Consensus        99 ~g~id~li~~Ag~  111 (266)
T 3o38_A           99 AGRLDVLVNNAGL  111 (266)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCcEEEECCCc
Confidence            3578999887664

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=87.38  E-value=4.9  Score=28.56  Aligned_cols=97  Identities=10%  Similarity=-0.017  Sum_probs=52.5

Q ss_pred             CCEEEEEcCCC-CccH-HHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           32 YVTVCDLYCGA-GVDV-DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        32 ~~~VLDlGcG~-G~~~-~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      +.+|+=+|+|. |..+ ..+...+. +++++|.+++.++..++..       .+.++.+|..+......  .....+|+|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~-------~~~~~~~d~~~~~~l~~--~~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLED--AGIEDADMY   73 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHH--TTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhc-------CcEEEEcCCCCHHHHHH--cCcccCCEE
Confidence            46788888865 2222 22333354 8999999988766554321       34566777654322110  113468998


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ++.-.      .. .....+..+.+.+.++ .++...
T Consensus        74 i~~~~------~~-~~~~~~~~~~~~~~~~-~ii~~~  102 (140)
T 1lss_A           74 IAVTG------KE-EVNLMSSLLAKSYGIN-KTIARI  102 (140)
T ss_dssp             EECCS------CH-HHHHHHHHHHHHTTCC-CEEEEC
T ss_pred             EEeeC------Cc-hHHHHHHHHHHHcCCC-EEEEEe
Confidence            76532      12 2333455556667775 444443

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=87.03  E-value=1.7  Score=36.76  Aligned_cols=97  Identities=13%  Similarity=0.072  Sum_probs=60.5

Q ss_pred             cCCCCEEEEEcC-C-CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGc-G-~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (258)
                      .+++.+||-.|+ | -|..+..+++....+++++|.+++.++.+++.    +  .. ..+  |..+..+...+..  ...
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g--a~-~~~--~~~~~~~~~~~~~~~~~~  216 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY----G--AE-YLI--NASKEDILRQVLKFTNGK  216 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----T--CS-EEE--ETTTSCHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C--Cc-EEE--eCCCchHHHHHHHHhCCC
Confidence            458899999994 3 35555666665444999999999888877542    1  01 122  2222333222211  235


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+...+-           ..+....++|++||.++..
T Consensus       217 g~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          217 GVDASFDSVGK-----------DTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             CEEEEEECCGG-----------GGHHHHHHHEEEEEEEEEC
T ss_pred             CceEEEECCCh-----------HHHHHHHHHhccCCEEEEE
Confidence            79999765432           2466677899999999875

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=86.82  E-value=4.3  Score=31.89  Aligned_cols=96  Identities=8%  Similarity=0.009  Sum_probs=57.2

Q ss_pred             EEEEEcCCCCccHHHHH----HcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           34 TVCDLYCGAGVDVDKWE----TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        34 ~VLDlGcG~G~~~~~~~----~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      +|+=+|+|.  ....++    ..+. .++.+|.+++.++...+..       ...++.+|..+.......  .-..+|+|
T Consensus         2 ~iiIiG~G~--~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~-------~~~~i~gd~~~~~~l~~a--~i~~ad~v   69 (218)
T 3l4b_C            2 KVIIIGGET--TAYYLARSMLSRKY-GVVIINKDRELCEEFAKKL-------KATIIHGDGSHKEILRDA--EVSKNDVV   69 (218)
T ss_dssp             CEEEECCHH--HHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHS-------SSEEEESCTTSHHHHHHH--TCCTTCEE
T ss_pred             EEEEECCCH--HHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHc-------CCeEEEcCCCCHHHHHhc--CcccCCEE
Confidence            466677654  333333    3344 8999999998877654332       456889998764432211  24578988


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ++..      . .......+..+.+.+.|...++....+
T Consensus        70 i~~~------~-~d~~n~~~~~~a~~~~~~~~iia~~~~  101 (218)
T 3l4b_C           70 VILT------P-RDEVNLFIAQLVMKDFGVKRVVSLVND  101 (218)
T ss_dssp             EECC------S-CHHHHHHHHHHHHHTSCCCEEEECCCS
T ss_pred             EEec------C-CcHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            7643      2 223445566666666677776655433

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=86.81  E-value=12  Score=30.84  Aligned_cols=110  Identities=8%  Similarity=-0.070  Sum_probs=65.8

Q ss_pred             CCEEEEEcCCC--Cc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh----hhhc
Q 025059           32 YVTVCDLYCGA--GV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEK  102 (258)
Q Consensus        32 ~~~VLDlGcG~--G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~  102 (258)
                      +.+||=.|++.  |.   .+..++..+. +|+.+|.++...+.+.+.....+   .+.++.+|+.+..-...    ....
T Consensus        30 ~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           30 GKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            56888888753  31   3344444565 89999999876665555444332   46789999977432111    1112


Q ss_pred             CCceeEEEeccccccc--------cCCHHHH-----------HHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQHLQMC--------FETEERA-----------RRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~--------~~~~~~~-----------~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+..|+++.+.+....        -.+.++.           -.+++.+...++.+|.++.+
T Consensus       106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~i  167 (296)
T 3k31_A          106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTL  167 (296)
T ss_dssp             HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred             cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence            3678999887754320        1223332           23455667777788888776

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=86.71  E-value=1.3  Score=32.95  Aligned_cols=102  Identities=10%  Similarity=0.069  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCCC-CccHHHHHH-cCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           31 PYVTVCDLYCGA-GVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ++.+|+=+|||. |..+...+. .+. +|+++|.+++.++.++.   ..    ....+.+|..+.......  .-..+|+
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~---~~----g~~~~~~d~~~~~~l~~~--~~~~ad~   87 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS---EF----SGFTVVGDAAEFETLKEC--GMEKADM   87 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT---TC----CSEEEESCTTSHHHHHTT--TGGGCSE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh---cC----CCcEEEecCCCHHHHHHc--CcccCCE
Confidence            568999999875 433333333 354 89999999876544321   11    345666776442211100  1246898


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |+....      +. .....+..+.+.+.+...++....+.
T Consensus        88 Vi~~~~------~~-~~~~~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           88 VFAFTN------DD-STNFFISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             EEECSS------CH-HHHHHHHHHHHHTSCCSEEEEECSSG
T ss_pred             EEEEeC------Cc-HHHHHHHHHHHHHCCCCeEEEEECCH
Confidence            876542      22 23344445555566666666654443

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=86.66  E-value=1.6  Score=37.25  Aligned_cols=94  Identities=20%  Similarity=0.019  Sum_probs=58.8

Q ss_pred             cCCCCEEEEEcC-C-CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGc-G-~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (258)
                      .+++.+||=+|+ | -|..+..+++....+++++ .+++.++.+++.        .+..+.   ....+...+..  ...
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l--------Ga~~i~---~~~~~~~~~~~~~~~~  215 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL--------GATPID---ASREPEDYAAEHTAGQ  215 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH--------TSEEEE---TTSCHHHHHHHHHTTS
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc--------CCCEec---cCCCHHHHHHHHhcCC
Confidence            348899999994 3 3666666666544489999 888887777543        122222   22223222211  235


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+...+      .     ..+....++|+++|.++..
T Consensus       216 g~D~vid~~g------~-----~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          216 GFDLVYDTLG------G-----PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             CEEEEEESSC------T-----HHHHHHHHHEEEEEEEEES
T ss_pred             CceEEEECCC------c-----HHHHHHHHHHhcCCeEEEE
Confidence            7999976442      1     3566777899999998865

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=86.62  E-value=3.2  Score=35.15  Aligned_cols=99  Identities=13%  Similarity=0.052  Sum_probs=58.7

Q ss_pred             hcCCCCEEEEEcCCCCc-cHHHHHH-cCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cC
Q 025059           28 YSHPYVTVCDLYCGAGV-DVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~-~~~~~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~  103 (258)
                      ...++.+||=+|+|.++ .+..+++ .+..+|+++|.+++-++.+++.-.      . ..+  |-.+.++.+.+..  ..
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga------~-~~i--~~~~~~~~~~v~~~t~g  230 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGA------D-VTI--NSGDVNPVDEIKKITGG  230 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTC------S-EEE--EC-CCCHHHHHHHHTTS
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCC------e-EEE--eCCCCCHHHHhhhhcCC
Confidence            45689999999998753 3444444 355699999999988777654321      1 112  1112222222211  23


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+|.++....          ....+....++|+++|.++..
T Consensus       231 ~g~d~~~~~~~----------~~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          231 LGVQSAIVCAV----------ARIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             SCEEEEEECCS----------CHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCceEEEEecc----------CcchhheeheeecCCceEEEE
Confidence            35666644321          124567778899999998876

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=86.53  E-value=0.62  Score=38.93  Aligned_cols=92  Identities=15%  Similarity=0.046  Sum_probs=58.7

Q ss_pred             cCCCCEEEEEcC-C-CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC-CchhhhhhhcCCc
Q 025059           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGc-G-~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~  105 (258)
                      .+++.+||-+|+ | -|..+..+++....+++++|.+++.++.+++.    +.  . ..+  |..+ ..+.+.    -..
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga--~-~~~--~~~~~~~~~~~----~~~  189 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL----GA--E-EAA--TYAEVPERAKA----WGG  189 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT----TC--S-EEE--EGGGHHHHHHH----TTS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CC--C-EEE--ECCcchhHHHH----hcC
Confidence            678999999998 3 46666666665334999999999888877542    11  1 111  2111 112111    157


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+|+. .+-           ..+....++|+++|.++..
T Consensus       190 ~d~vid-~g~-----------~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          190 LDLVLE-VRG-----------KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             EEEEEE-CSC-----------TTHHHHHTTEEEEEEEEEC
T ss_pred             ceEEEE-CCH-----------HHHHHHHHhhccCCEEEEE
Confidence            999987 431           2456778899999998765

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=86.21  E-value=5.9  Score=32.74  Aligned_cols=109  Identities=13%  Similarity=-0.025  Sum_probs=69.3

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhcC
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (258)
                      .+..+|=-|.+.|.   .+..++..+. +|+.+|.+++.++.+.+.+..     ++..+++|+.+..-.+    ......
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~  101 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGG-----GAVGIQADSANLAELDRLYEKVKAEA  101 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCT-----TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCC-----CeEEEEecCCCHHHHHHHHHHHHHHc
Confidence            46788888887762   2344444565 999999999988877665522     5778899997743211    112235


Q ss_pred             CceeEEEeccccccc----cCCHHHH-----------HHHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQMC----FETEERA-----------RRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~----~~~~~~~-----------~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ++.|+++.+.+....    -.+.++.           -.+.+.+...|+.+|.++.+
T Consensus       102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni  158 (273)
T 4fgs_A          102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT  158 (273)
T ss_dssp             SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence            789999887654221    0122222           34455677788888887766

>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U

Probab=85.85  E-value=1.3  Score=43.34  Aligned_cols=100  Identities=15%  Similarity=0.142  Sum_probs=64.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ...+.++||+|+|.-.=...+.- ....++.+|+-|-+     +...  .+.....|++.|-....++     ....+|.
T Consensus       819 ~~~~~~~lDlGTGPE~RiLsLiP-~~~pvtm~D~RP~a-----e~~~--~w~~~T~f~~~DyL~~~~~-----~~~~~D~  885 (1289)
T 1ej6_A          819 VYDGDVVLDLGTGPEAKILELIP-ATSPVTCVDIRPTA-----QPSG--CWNVRTTFLELDYLSDGWI-----TGVRGDI  885 (1289)
T ss_dssp             CCTTCCEEEESCCSSCGGGGTSC-TTSCEEEEESSCCC-----SCST--TBSSCEEEEESCTTSSSCG-----GGCCCSE
T ss_pred             ecccceEEEccCCCcceeeeecC-CCCceEEecccCch-----hhhc--cccccceeeEcccccccee-----ecCCCcE
Confidence            55678999999988642222211 23479999987654     1111  1233579999998776654     3568999


Q ss_pred             EEeccccccccCCHH-HHHHHHHHHHhcccCCcE
Q 025059          109 VCCFQHLQMCFETEE-RARRLLQNVSSLLKPGGY  141 (258)
Q Consensus       109 V~~~~~l~~~~~~~~-~~~~~l~~i~~~LkpgG~  141 (258)
                      |+|.+.+..++-... .+.+.++++.+..++.|.
T Consensus       886 vt~i~SLGAA~A~a~~tl~~~~~q~l~~~~~~~~  919 (1289)
T 1ej6_A          886 VTCMLSLGAAAAGKSMTFDAAFQQLIKVLSKSTA  919 (1289)
T ss_dssp             EEECSCHHHHHHHHTCCHHHHHHHHHHHHHTSCC
T ss_pred             EEEEeechhhhhccCCcHHHHHHHHHHHHHhcCc
Confidence            999998875432221 356677777777776554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=85.67  E-value=23  Score=33.09  Aligned_cols=116  Identities=13%  Similarity=0.197  Sum_probs=69.7

Q ss_pred             eeEEEEcCCCCC-chhhhhhh----cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE-EcCc----hH
Q 025059           82 IAEFFEADPCAE-NFETQMQE----KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPDS----ST  151 (258)
Q Consensus        82 ~~~~~~~d~~~~-~~~~~~~~----~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~-~~~~----~~  151 (258)
                      +..++.+|+.+. .+...+..    .....-++++-.++.|  .+.+...++++.+.+.  ++|.+++. ..+.    +.
T Consensus       189 ~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Y--l~~~~~~~ll~~~~~~--~~~~~~~~e~~~~~~~~d~  264 (695)
T 2zwa_A          189 KYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAY--MKPERSDSIIEATSKM--ENSHFIILEQLIPKGPFEP  264 (695)
T ss_dssp             SEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGG--SCHHHHHHHHHHHHTS--SSEEEEEEEECCTTCTTSH
T ss_pred             CeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEE--cCHHHHHHHHHHHhhC--CCceEEEEEeecCCCCCCh
Confidence            568899999774 22222221    1234556777777877  5688899999999864  56666654 2222    22


Q ss_pred             HHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcC
Q 025059          152 IWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAG  231 (258)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G  231 (258)
                      ..+.+.++...   .+         .                  |         +.. .    ....+.+...+.+.++|
T Consensus       265 f~~~m~~~~~~---~g---------~------------------~---------l~~-~----~~~~~~~~~~~~~~~~G  300 (695)
T 2zwa_A          265 FSKQMLAHFKR---ND---------S------------------P---------LQS-V----LKYNTIESQVQRFNKLG  300 (695)
T ss_dssp             HHHHHHHHHHH---TT---------C------------------C---------CCG-G----GTCCSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH---cC---------C------------------C---------CCc-c----ccCCCHHHHHHHHHHCC
Confidence            33333222211   00         0                  0         100 1    11346788888899999


Q ss_pred             cEEEEeCChhHHHH
Q 025059          232 LEYVEIQNLNEFYD  245 (258)
Q Consensus       232 f~~~~~~~f~~~~~  245 (258)
                      |+.+...++.++|+
T Consensus       301 w~~v~~~~~~~~y~  314 (695)
T 2zwa_A          301 FAYVNVGDMFQLWE  314 (695)
T ss_dssp             CCEEEEEEHHHHHH
T ss_pred             CCCcceeeHHHHHh
Confidence            99999999999884

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=85.39  E-value=4.1  Score=33.09  Aligned_cols=84  Identities=15%  Similarity=-0.018  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .+.+||=-|++.|.   .+..+++.+. +|+.+|.++..++.+.+.+.....+..+.++.+|+.+..-...+...-+..|
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            35678877766541   2333444455 8999999998888776666554333367889999876432222222346789


Q ss_pred             EEEecccc
Q 025059          108 LVCCFQHL  115 (258)
Q Consensus       108 ~V~~~~~l  115 (258)
                      +++.+.+.
T Consensus        88 ~lv~nAg~   95 (267)
T 3t4x_A           88 ILINNLGI   95 (267)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99887654

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=85.39  E-value=13  Score=29.81  Aligned_cols=111  Identities=9%  Similarity=-0.094  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCC-CCccHH----HHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhh
Q 025059           31 PYVTVCDLYCG-AGVDVD----KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQE  101 (258)
Q Consensus        31 ~~~~VLDlGcG-~G~~~~----~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~  101 (258)
                      ++.+||=.|++ +|+...    .++..+. +|+.+|.+....+.+++.....+   .+.++.+|+.+..-.    ..+..
T Consensus        13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           13 DGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLKT   88 (271)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHHH
Confidence            56889988875 233333    3344455 89999988766555544443332   477899999774321    11222


Q ss_pred             cCCceeEEEeccccccc-------c--CCHHHHH-----------HHHHHHHhcccCCcEEEEE
Q 025059          102 KANQADLVCCFQHLQMC-------F--ETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~-------~--~~~~~~~-----------~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+..|+++.+.+....       .  .+.++..           .+++.+...++++|.++.+
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i  152 (271)
T 3ek2_A           89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTL  152 (271)
T ss_dssp             HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEE
Confidence            34689999887655321       0  2233332           3445566677778887766

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=85.08  E-value=2.1  Score=36.81  Aligned_cols=96  Identities=21%  Similarity=0.128  Sum_probs=57.7

Q ss_pred             cC-CCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SH-PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~-~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      .. ++.+||=+|+|. |..+.++++....+++++|.+++.++.+++.+..     . ..+  |..+..   .+....+.+
T Consensus       184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa-----~-~v~--~~~~~~---~~~~~~~~~  252 (366)
T 1yqd_A          184 LDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGA-----D-SFL--VSRDQE---QMQAAAGTL  252 (366)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCC-----S-EEE--ETTCHH---HHHHTTTCE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC-----c-eEE--eccCHH---HHHHhhCCC
Confidence            45 889999999764 5555566555334899999999887776533311     1 122  222211   111123479


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|+.......          .+....++|+++|.++..
T Consensus       253 D~vid~~g~~~----------~~~~~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          253 DGIIDTVSAVH----------PLLPLFGLLKSHGKLILV  281 (366)
T ss_dssp             EEEEECCSSCC----------CSHHHHHHEEEEEEEEEC
T ss_pred             CEEEECCCcHH----------HHHHHHHHHhcCCEEEEE
Confidence            99976543221          234556788999998765

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=85.03  E-value=14  Score=29.89  Aligned_cols=112  Identities=13%  Similarity=-0.084  Sum_probs=65.0

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecC-hhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhc
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVA-TSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~  102 (258)
                      .+.++|=-|++.|.   .+..++..+. +|+.++.. ...++...+.+...+  .++.++.+|+.+..-..    .....
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45778888866552   2334444465 88887764 455555555554432  27889999997743211    11112


Q ss_pred             CCceeEEEeccccccc----cCCHHHH-----------HHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQHLQMC----FETEERA-----------RRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~----~~~~~~~-----------~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+..|+++.+.+....    -.+.++.           -.+.+.+...|+++|.++.+
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i  151 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLT  151 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEE
Confidence            3578999877654321    0123332           23455677778888888776

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=84.85  E-value=11  Score=29.98  Aligned_cols=111  Identities=9%  Similarity=-0.028  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCCCccHHHH----HH-cCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-hhh---hhh
Q 025059           31 PYVTVCDLYCGAGVDVDKW----ET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ETQ---MQE  101 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~----~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~---~~~  101 (258)
                      ++.+||=.|+ +|+....+    +. .+. +|++++.++..++.+.+.+...+  .++.++.+|+.+..- ...   +..
T Consensus         3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   78 (276)
T 1wma_A            3 GIHVALVTGG-NKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRK   78 (276)
T ss_dssp             CCCEEEESSC-SSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHH
Confidence            3567776664 44444333    34 454 89999999887776666655432  267899999976431 111   111


Q ss_pred             cCCceeEEEecccccccc---CC-HHHH-----------HHHHHHHHhcccCCcEEEEE
Q 025059          102 KANQADLVCCFQHLQMCF---ET-EERA-----------RRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~---~~-~~~~-----------~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+..|+|+...+.....   .. .++.           ..+++.+...++++|.++.+
T Consensus        79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~  137 (276)
T 1wma_A           79 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  137 (276)
T ss_dssp             HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence            234799998766543110   11 1222           23455666677777877766

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=84.77  E-value=4.5  Score=33.07  Aligned_cols=82  Identities=11%  Similarity=0.070  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh----hhhcC
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~  103 (258)
                      ++..+|=-|.+.|.   .+..++..+. +|+.+|.+++.++.+.+.++..+  .++.++++|+.+..--+.    ....-
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46778888877762   2344444565 89999999999998888776653  378899999987432111    12234


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      ++.|+++.+.++
T Consensus        83 G~iDiLVNNAGi   94 (254)
T 4fn4_A           83 SRIDVLCNNAGI   94 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            789999887654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=84.69  E-value=8.9  Score=31.12  Aligned_cols=83  Identities=10%  Similarity=-0.001  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCCCC---ccHHHHHHcCCCeEEEEecC------------hhHHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVA------------TSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (258)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~~~~~~~~~v~gvD~s------------~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (258)
                      .+.+||=-|++.|   ..+..+++.+. +|+.+|.+            ++.++...+.....+  .++.++.+|+.+..-
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   88 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRES   88 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHHH
Confidence            4678888887665   22344444465 89999987            566665555544432  278999999987432


Q ss_pred             hhh----hhhcCCceeEEEeccccc
Q 025059           96 ETQ----MQEKANQADLVCCFQHLQ  116 (258)
Q Consensus        96 ~~~----~~~~~~~fD~V~~~~~l~  116 (258)
                      ...    .....+..|+++.+.+..
T Consensus        89 v~~~~~~~~~~~g~id~lv~nAg~~  113 (278)
T 3sx2_A           89 LSAALQAGLDELGRLDIVVANAGIA  113 (278)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            111    111235789998877654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=84.54  E-value=7.5  Score=32.09  Aligned_cols=112  Identities=13%  Similarity=0.065  Sum_probs=65.1

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecCh--hHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhh
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVAT--SGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQE  101 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~  101 (258)
                      .+.+||=.|++.|.   .+..+++.+. +|+.+|.+.  ...+.+.+.....+  .++.++.+|+.+..-..    ....
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            35688888876552   2233444455 899888763  34444444444332  27888999997743211    1112


Q ss_pred             cCCceeEEEecccccccc-----CCHHHH-----------HHHHHHHHhcccCCcEEEEE
Q 025059          102 KANQADLVCCFQHLQMCF-----ETEERA-----------RRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~-----~~~~~~-----------~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+..|+++.+.+.....     .+.++.           -.+++.+...++.+|.++.+
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i  184 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT  184 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence            236789998876643211     123332           34556677788888988776

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=84.39  E-value=5.7  Score=31.94  Aligned_cols=81  Identities=9%  Similarity=-0.085  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcC
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~  103 (258)
                      .+.+||=.|++.|.   .+..++..+. +|+.+|.++..++.+.+.+...+  .++.++.+|+.+..-.    ...... 
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~-   81 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH-   81 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh-
Confidence            45678888877652   2334444465 89999999998888777776542  3789999999774321    112223 


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      +..|+++.+.+.
T Consensus        82 g~id~lv~nAg~   93 (252)
T 3h7a_A           82 APLEVTIFNVGA   93 (252)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CCceEEEECCCc
Confidence            789999887664

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=83.83  E-value=2.6  Score=37.67  Aligned_cols=101  Identities=11%  Similarity=0.060  Sum_probs=60.8

Q ss_pred             CCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        32 ~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      .++|+=+|||. |..+...+......++.+|.+++.++.+.+++       .+..+++|..+.......  .-...|+++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~A--gi~~ad~~i   73 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEA--GAQDADMLV   73 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHH--TTTTCSEEE
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhc--CCCcCCEEE
Confidence            46788888875 32222222222238999999999988876664       567899999876543222  346789887


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +.-       +.+...-+...+++.+.+.-..+...-+
T Consensus        74 a~t-------~~De~Nl~~~~~Ak~~~~~~~~iar~~~  104 (461)
T 4g65_A           74 AVT-------NTDETNMAACQVAFTLFNTPNRIARIRS  104 (461)
T ss_dssp             ECC-------SCHHHHHHHHHHHHHHHCCSSEEEECCC
T ss_pred             EEc-------CChHHHHHHHHHHHHhcCCccceeEecc
Confidence            532       1233444555566666555555544333

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=83.78  E-value=13  Score=29.88  Aligned_cols=79  Identities=11%  Similarity=-0.034  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCCCC---ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhcC
Q 025059           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (258)
                      .+.+||=.|++.|   ..+..+++.+. +|+.+|.++..++...+.+..     ++.++.+|+.+..-..    ......
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   80 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGP-----AAYAVQMDVTRQDSIDAAIAATVEHA   80 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC-----CceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            3567888886655   22334444465 899999998887766555421     5788999997743211    112234


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      +..|+++.+.+.
T Consensus        81 g~id~lv~~Ag~   92 (259)
T 4e6p_A           81 GGLDILVNNAAL   92 (259)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            689999887654

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=83.47  E-value=15  Score=29.99  Aligned_cols=79  Identities=11%  Similarity=-0.010  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhcC
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (258)
                      .+.+||=.|++.|.   .+..+++.+. +|+.+|.+++.++.+.+.+     +.++.++.+|+.+..-..    ......
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKI-----GCGAAACRVDVSDEQQIIAMVDACVAAF  101 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH-----CSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc-----CCcceEEEecCCCHHHHHHHHHHHHHHc
Confidence            45778888876652   2334444465 8999999988877766555     126788999997743211    111223


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      +..|+++.+.+.
T Consensus       102 g~iD~lvnnAg~  113 (277)
T 3gvc_A          102 GGVDKLVANAGV  113 (277)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            578999887655

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=83.35  E-value=1.3  Score=37.16  Aligned_cols=90  Identities=11%  Similarity=-0.016  Sum_probs=56.8

Q ss_pred             EEEEEcC-C-CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           34 TVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        34 ~VLDlGc-G-~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      +||=.|+ | -|..+.++++....+++++|.+++.++.+++.-.      ...+-..+...  . ..+  ..+.+|+|+-
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa------~~vi~~~~~~~--~-~~~--~~~~~d~v~d  217 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGA------NRILSRDEFAE--S-RPL--EKQLWAGAID  217 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTC------SEEEEGGGSSC--C-CSS--CCCCEEEEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC------CEEEecCCHHH--H-Hhh--cCCCccEEEE
Confidence            4999987 3 4666777776644499999999999888865311      11121111111  1 001  2457998865


Q ss_pred             ccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .-       ..    ..+....++|+++|.++..
T Consensus       218 ~~-------g~----~~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          218 TV-------GD----KVLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             SS-------CH----HHHHHHHHTEEEEEEEEEC
T ss_pred             CC-------Cc----HHHHHHHHHHhcCCEEEEE
Confidence            32       11    2678888999999999876

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=83.15  E-value=8.1  Score=31.39  Aligned_cols=112  Identities=11%  Similarity=-0.006  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEE-ecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhc
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGI-DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gv-D~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~  102 (258)
                      .+.++|=-|++.|.   .+..++..+. +++.+ +.++..++...+.....+  .++.++.+|+.+..-..    .....
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEA  102 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            56788888877652   2344445566 77776 445556666555554432  26888999997743211    11122


Q ss_pred             CCceeEEEeccccccc----cCCHHHH-----------HHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQHLQMC----FETEERA-----------RRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~----~~~~~~~-----------~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+..|+++.+.+....    -.+.+..           -.+++.+...++++|.++.+
T Consensus       103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i  160 (267)
T 3u5t_A          103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINM  160 (267)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEE
Confidence            3689999887654311    1122222           23455666777778888776

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=83.03  E-value=12  Score=30.61  Aligned_cols=82  Identities=7%  Similarity=-0.020  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEec-ChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh----hhhc
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDV-ATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEK  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~-s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~  102 (258)
                      .+.++|=-|++.|.   .+..++..+. +|+.+|. +++.++...+.+...+  .++.++.+|+.+..-...    ....
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  104 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVVAE  104 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            45778888876652   2334444455 8999996 6666666655555432  278899999987542111    1122


Q ss_pred             CCceeEEEecccc
Q 025059          103 ANQADLVCCFQHL  115 (258)
Q Consensus       103 ~~~fD~V~~~~~l  115 (258)
                      .+..|+++.+.+.
T Consensus       105 ~g~iD~lvnnAg~  117 (280)
T 4da9_A          105 FGRIDCLVNNAGI  117 (280)
T ss_dssp             HSCCCEEEEECC-
T ss_pred             cCCCCEEEECCCc
Confidence            3578999887655

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=82.87  E-value=13  Score=29.85  Aligned_cols=112  Identities=13%  Similarity=-0.021  Sum_probs=65.4

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEE-ecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhc
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGI-DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gv-D~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~  102 (258)
                      .+.+||=-|++.|.   .+..++..+. +|+.+ +.++...+.+.+.+...+  .++.++.+|+.+..-..    .....
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46788888877652   2334444465 78777 777777776666655432  26889999997743211    11112


Q ss_pred             CCceeEEEeccccccc-----cCCHHHH-----------HHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQHLQMC-----FETEERA-----------RRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~-----~~~~~~~-----------~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+..|+++.+.+....     -.+.+..           -.+.+.+...++++|.++..
T Consensus        84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i  142 (259)
T 3edm_A           84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTF  142 (259)
T ss_dssp             HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            3578999877643210     0122222           33455666777777877766

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=82.55  E-value=6.4  Score=31.41  Aligned_cols=82  Identities=7%  Similarity=-0.070  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCCCC---ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh----hhhcC
Q 025059           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~  103 (258)
                      .+.+||=.|++.|   ..+..+++.+. +|+.+|.+++.++.+.+.+...+  .++.++.+|+.+..-...    .....
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4678888887655   23344444465 89999999998888777765542  278899999977432111    11123


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      +..|+++.+.+.
T Consensus        85 g~id~li~~Ag~   96 (253)
T 3qiv_A           85 GGIDYLVNNAAI   96 (253)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            578999887654

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=82.47  E-value=10  Score=30.59  Aligned_cols=82  Identities=7%  Similarity=-0.062  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhcC
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (258)
                      .+.+||=.|++.|.   .+..++..+. +|+.+|.+++.++.+.+.+...+  .++.++.+|+.+..-..    ......
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKAY   86 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            36788888877662   2334444465 89999999988888777665542  27889999998743211    112234


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      +..|+++.+.+.
T Consensus        87 g~id~lv~nAg~   98 (264)
T 3ucx_A           87 GRVDVVINNAFR   98 (264)
T ss_dssp             SCCSEEEECCCS
T ss_pred             CCCcEEEECCCC
Confidence            689999877643

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=82.02  E-value=1.4  Score=37.86  Aligned_cols=95  Identities=21%  Similarity=0.104  Sum_probs=57.2

Q ss_pred             cC-CCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           29 SH-PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        29 ~~-~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      .. ++.+||=+|+|. |..+.++++. +. +++++|.+++.++.+++.+..     . ..+..+  +..   .+....+.
T Consensus       177 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa-----~-~vi~~~--~~~---~~~~~~~g  244 (357)
T 2cf5_A          177 LKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGA-----D-DYVIGS--DQA---KMSELADS  244 (357)
T ss_dssp             TTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCC-----S-CEEETT--CHH---HHHHSTTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCC-----c-eeeccc--cHH---HHHHhcCC
Confidence            45 889999999764 4555555554 54 899999998877766533211     1 112111  111   11112347


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+|+..-.-.          ..+....++|++||.++..
T Consensus       245 ~D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~  274 (357)
T 2cf5_A          245 LDYVIDTVPVH----------HALEPYLSLLKLDGKLILM  274 (357)
T ss_dssp             EEEEEECCCSC----------CCSHHHHTTEEEEEEEEEC
T ss_pred             CCEEEECCCCh----------HHHHHHHHHhccCCEEEEe
Confidence            99997654321          1245567899999999876

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=81.95  E-value=5.3  Score=37.48  Aligned_cols=123  Identities=13%  Similarity=0.199  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-----------CC--CeEEEEec---ChhHHHHHHHHHH-----------hcC-----
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-----------LI--ANYIGIDV---ATSGIGEARDTWE-----------NQR-----   78 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-----------~~--~~v~gvD~---s~~~l~~a~~~~~-----------~~~-----   78 (258)
                      +..+|+|+|.|+|.+.......           ..  -+++.++.   +.+.+..|-..++           ...     
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            4579999999999776554332           11  26899998   4444443322211           110     


Q ss_pred             --------CCceeEEEEcCCCCCchhhhhhh-cCCceeEEEecc-ccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059           79 --------KNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus        79 --------~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                              -...+++..+|+.+.  .+.+.. ....+|.+..-. +...  ...--...++..+.++++|||.+. +...
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~--l~~~~~~~~~~~da~flD~f~p~~--np~~w~~~~~~~l~~~~~~g~~~~-t~~~  212 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTL--LPTLDDSLNNQVDAWFLDGFAPAK--NPDMWNEQLFNAMARMTRPGGTFS-TFTA  212 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHH--GGGCCGGGTTCEEEEEECSSCC----CCTTCSHHHHHHHHHHEEEEEEEE-ESCC
T ss_pred             ceEEEecCCcEEEEEEccCHHHH--HhhcccccCCceeEEEECCCCCCC--ChhhhhHHHHHHHHHHhCCCCEEE-eccC
Confidence                    012456677775321  111110 147899996532 1111  000012678899999999999864 3333


Q ss_pred             chHHHHHHHH
Q 025059          149 SSTIWAKYQK  158 (258)
Q Consensus       149 ~~~~~~~~~~  158 (258)
                      ...+.+.+.+
T Consensus       213 ~~~vr~~l~~  222 (689)
T 3pvc_A          213 AGFVRRGLQQ  222 (689)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHh
Confidence            4455444443

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=81.61  E-value=15  Score=29.55  Aligned_cols=84  Identities=7%  Similarity=-0.159  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCCCC---ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhcC
Q 025059           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (258)
                      .+.++|=-|++.|   ..+..++..+. +|+.+|.++..++.+.+.+.....+.++.++.+|+.+..-..    ......
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4677888887765   22334444465 899999999888887776655222225889999997743211    111123


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      +..|+++.+.+.
T Consensus        86 g~id~lvnnAg~   97 (265)
T 3lf2_A           86 GCASILVNNAGQ   97 (265)
T ss_dssp             CSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            678999887654

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=81.61  E-value=1.2  Score=43.86  Aligned_cols=54  Identities=19%  Similarity=0.205  Sum_probs=42.2

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCC
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP   90 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~   90 (258)
                      +..+++||-||.|++...+...++ ..+.++|+++.+++.-+.+++      ...++..|+
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI  593 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP------GSTVFTEDC  593 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT------TSEEECSCH
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC------CCccccccH
Confidence            457899999999999999988887 568899999999877665553      234566664

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=81.44  E-value=6.7  Score=32.51  Aligned_cols=82  Identities=12%  Similarity=-0.002  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCCC---ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh----hhhcC
Q 025059           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~  103 (258)
                      .+.+||=.|++.|   ..+..++..+. +|+.+|.++..++.+.+.+...+  .++.++.+|+.+..-...    .....
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            4578888887765   22334444465 89999999999888877776542  378899999977432111    11123


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      +..|+++.+.+.
T Consensus       107 g~id~lvnnAg~  118 (301)
T 3tjr_A          107 GGVDVVFSNAGI  118 (301)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            578999887654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=81.10  E-value=20  Score=28.78  Aligned_cols=83  Identities=7%  Similarity=-0.040  Sum_probs=49.6

Q ss_pred             CCEEEEEcCCCC---ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch-hhh---hhhcCC
Q 025059           32 YVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ETQ---MQEKAN  104 (258)
Q Consensus        32 ~~~VLDlGcG~G---~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~---~~~~~~  104 (258)
                      +.+||=.|++.|   ..+..++..+. +|+.+|.++..++.+.+.+.....+.++.++.+|+.+..- ...   .....+
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            567888886554   12233344455 8999999987776655554332112267889999976431 111   111235


Q ss_pred             ceeEEEecccc
Q 025059          105 QADLVCCFQHL  115 (258)
Q Consensus       105 ~fD~V~~~~~l  115 (258)
                      ..|+++.+.+.
T Consensus        86 ~id~lv~~Ag~   96 (267)
T 2gdz_A           86 RLDILVNNAGV   96 (267)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999887654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=80.84  E-value=9.6  Score=30.21  Aligned_cols=81  Identities=6%  Similarity=0.001  Sum_probs=53.0

Q ss_pred             CCEEEEEcCCCC---ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcCC
Q 025059           32 YVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKAN  104 (258)
Q Consensus        32 ~~~VLDlGcG~G---~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~~  104 (258)
                      +.+||=.|++.|   ..+..+++.+. +|+.++.++..++...+.+...+  .++.++.+|+.+..-.    .......+
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAENL   81 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            567777776554   12344444455 89999999988887777665543  3788999999774321    11222356


Q ss_pred             ceeEEEecccc
Q 025059          105 QADLVCCFQHL  115 (258)
Q Consensus       105 ~fD~V~~~~~l  115 (258)
                      ..|+++.+.+.
T Consensus        82 ~id~li~~Ag~   92 (247)
T 3lyl_A           82 AIDILVNNAGI   92 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999887654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=80.76  E-value=16  Score=29.68  Aligned_cols=82  Identities=12%  Similarity=0.050  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecC----------------hhHHHHHHHHHHhcCCCceeEEEEcCCC
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVA----------------TSGIGEARDTWENQRKNFIAEFFEADPC   91 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s----------------~~~l~~a~~~~~~~~~~~~~~~~~~d~~   91 (258)
                      .+.++|=-|++.|.   .+..++..+. +|+.+|.+                ++.++...+.....  +.++.++.+|+.
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~   86 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH--NRRIVTAEVDVR   86 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT--TCCEEEEECCTT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhc--CCceEEEEcCCC
Confidence            36788888877652   2334444455 89999987                55666655555443  237889999997


Q ss_pred             CCchhh----hhhhcCCceeEEEecccc
Q 025059           92 AENFET----QMQEKANQADLVCCFQHL  115 (258)
Q Consensus        92 ~~~~~~----~~~~~~~~fD~V~~~~~l  115 (258)
                      +..-..    ......+..|+++.+.+.
T Consensus        87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           87 DYDALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            743211    111123578999887765

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=80.71  E-value=3.4  Score=38.66  Aligned_cols=123  Identities=14%  Similarity=0.223  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-----------CC--CeEEEEec---ChhHHHHHHHHHHh-----------cCC----
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-----------LI--ANYIGIDV---ATSGIGEARDTWEN-----------QRK----   79 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-----------~~--~~v~gvD~---s~~~l~~a~~~~~~-----------~~~----   79 (258)
                      +..+|||+|-|+|.+.......           ..  -++++++.   +++.+..+-..++.           ...    
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            4468999999999776554332           11  15899998   77777644332111           100    


Q ss_pred             ---------CceeEEEEcCCCCCchhhhhhh-cCCceeEEEec-cccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059           80 ---------NFIAEFFEADPCAENFETQMQE-KANQADLVCCF-QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus        80 ---------~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~-~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                               ...+++..+|+.+.  .+.+.. ....+|+|..- |+...  .+.---..++..+.++++|||.+. +...
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~--l~~~~~~~~~~~d~~~~D~f~p~~--np~~w~~~~~~~l~~~~~~g~~~~-t~~~  220 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINEL--TSQLDDSLNQKVDAWFLDGFAPAK--NPDMWTQNLFNAMARLARPGGTLA-TFTS  220 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHH--GGGBCGGGTTCEEEEEECCSCGGG--CGGGSCHHHHHHHHHHEEEEEEEE-ESCC
T ss_pred             ceEEEecCCcEEEEEecCCHHHH--HHhcccccCCcccEEEECCCCCcC--ChhhhhHHHHHHHHHHhCCCCEEE-eccC
Confidence                     12345566665221  111110 14689999652 21110  000113578899999999999864 3333


Q ss_pred             chHHHHHHHH
Q 025059          149 SSTIWAKYQK  158 (258)
Q Consensus       149 ~~~~~~~~~~  158 (258)
                      ...+.+.+.+
T Consensus       221 ~~~vr~~L~~  230 (676)
T 3ps9_A          221 AGFVRRGLQD  230 (676)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHh
Confidence            3444444443

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=80.59  E-value=6.1  Score=31.46  Aligned_cols=79  Identities=8%  Similarity=-0.014  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      ++.+||=.|++.|.   .+..++..+. +|+.+|.++..++...+.+..     ++.+..+|+.+..-...+....+..|
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~id   86 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKD-----NYTIEVCNLANKEECSNLISKTSNLD   86 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCS-----SEEEEECCTTSHHHHHHHHHTCSCCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhcc-----CccEEEcCCCCHHHHHHHHHhcCCCC
Confidence            56788888866551   2233444455 899999998888776655532     67888999876432222222345789


Q ss_pred             EEEecccc
Q 025059          108 LVCCFQHL  115 (258)
Q Consensus       108 ~V~~~~~l  115 (258)
                      +++.+.+.
T Consensus        87 ~li~~Ag~   94 (249)
T 3f9i_A           87 ILVCNAGI   94 (249)
T ss_dssp             EEEECCC-
T ss_pred             EEEECCCC
Confidence            99887654

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=80.57  E-value=4.7  Score=34.63  Aligned_cols=98  Identities=12%  Similarity=-0.024  Sum_probs=57.8

Q ss_pred             cCCCCEEEEEc-CC-CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLY-CG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlG-cG-~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ..++.+||=.| +| -|..+.++++....++++++ +++.++.+++.    +.  . ..+  |..+..+.+.+.. ...+
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~l----Ga--~-~v~--~~~~~~~~~~~~~-~~g~  249 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKL----GA--D-DVI--DYKSGSVEEQLKS-LKPF  249 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHT----TC--S-EEE--ETTSSCHHHHHHT-SCCB
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHc----CC--C-EEE--ECCchHHHHHHhh-cCCC
Confidence            45789999999 44 35666666665334899998 67666666321    11  1 122  2222233222221 2579


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+|+..-+-.         ...+....++|++||.++...
T Consensus       250 D~vid~~g~~---------~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          250 DFILDNVGGS---------TETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             SEEEESSCTT---------HHHHGGGGBCSSSCCEEEESC
T ss_pred             CEEEECCCCh---------hhhhHHHHHhhcCCcEEEEeC
Confidence            9997654211         124566778999999998763

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=80.54  E-value=22  Score=30.55  Aligned_cols=101  Identities=11%  Similarity=-0.029  Sum_probs=67.6

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCc-eeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+||.++.+-|.++..++..+   ++.+.-|-.+....+.++..++... .+.+...-  + .       ....+|+|
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~~---~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~--~-~-------~~~~~~~v  104 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEHK---PYSIGDSYISELATRENLRLNGIDESSVKFLDST--A-D-------YPQQPGVV  104 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGGC---CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETT--S-C-------CCSSCSEE
T ss_pred             CCCCEEEECCCCCHHHHhhccCC---ceEEEhHHHHHHHHHHHHHHcCCCccceEecccc--c-c-------cccCCCEE
Confidence            45689999999998877765443   3444335555555666666654422 24443221  1 1       35789999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +...     -.+...+...+..+...|+||+.+++...+.
T Consensus       105 ~~~l-----pk~~~~l~~~L~~l~~~l~~~~~i~~~g~~~  139 (375)
T 4dcm_A          105 LIKV-----PKTLALLEQQLRALRKVVTSDTRIIAGAKAR  139 (375)
T ss_dssp             EEEC-----CSCHHHHHHHHHHHHTTCCTTSEEEEEEEGG
T ss_pred             EEEc-----CCCHHHHHHHHHHHHhhCCCCCEEEEEeccc
Confidence            7643     3567788999999999999999998775554

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=80.16  E-value=7.1  Score=31.60  Aligned_cols=78  Identities=18%  Similarity=0.113  Sum_probs=47.6

Q ss_pred             CCEEEEEcCCC-Cc-cHHHHHHcCCCeEEEEecCh-------------------hHHHHHHHHHHhcCCCceeEEEEcCC
Q 025059           32 YVTVCDLYCGA-GV-DVDKWETALIANYIGIDVAT-------------------SGIGEARDTWENQRKNFIAEFFEADP   90 (258)
Q Consensus        32 ~~~VLDlGcG~-G~-~~~~~~~~~~~~v~gvD~s~-------------------~~l~~a~~~~~~~~~~~~~~~~~~d~   90 (258)
                      +.+||=+|||. |. .+..++..+.++++.+|.+.                   .-.+.+.+++.......++..+..++
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~  110 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALL  110 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccC
Confidence            47899999984 33 23444455888999999887                   55666667776543333455555554


Q ss_pred             CCCchhhhhhhcCCceeEEEecc
Q 025059           91 CAENFETQMQEKANQADLVCCFQ  113 (258)
Q Consensus        91 ~~~~~~~~~~~~~~~fD~V~~~~  113 (258)
                      ....+.+.+    ..+|+|+...
T Consensus       111 ~~~~~~~~~----~~~DvVi~~~  129 (249)
T 1jw9_B          111 DDAELAALI----AEHDLVLDCT  129 (249)
T ss_dssp             CHHHHHHHH----HTSSEEEECC
T ss_pred             CHhHHHHHH----hCCCEEEEeC
Confidence            322222112    3689998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	2e-33
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	5e-09
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	4e-07
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	3e-06
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	2e-05
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	4e-05
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	7e-04
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	0.002
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	0.003
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.003

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score =  119 bits (299), Expect = 2e-33
 Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 23/239 (9%)

Query: 19  FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR 78
           F K  LI++Y+    +V DL CG G D+ K+E A I  Y G+D+A   I +AR    N +
Sbjct: 12  FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK 71

Query: 79  KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138
           + F   F   D    + +   +        +         F T E      +N++  L+P
Sbjct: 72  RRFKVFFRAQDSYGRHMDLGKEFDV-----ISSQFSFHYAFSTSESLDIAQRNIARHLRP 126

Query: 139 GGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLF 198
           GGYF+   P    I  +Y++   +                   + Y I  E  E+     
Sbjct: 127 GGYFIMTVPSRDVILERYKQGRMSN------------------DFYKIELEKMEDVPMES 168

Query: 199 GKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRHADECWSKS 257
            ++Y+    + ++   +  V F  ++   +  GL  VE +   +FY+D    +   SK 
Sbjct: 169 VREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEGRRNPELSKK 227

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.4 bits (127), Expect = 5e-09
 Identities = 44/254 (17%), Positives = 80/254 (31%), Gaps = 24/254 (9%)

Query: 12  THHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR 71
           T  R  E+    L  +  H    V D+ CG GVD          +   +D +   +  A 
Sbjct: 37  TRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIML-VEEGFSVTSVDASDKMLKYAL 95

Query: 72  DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC----FQHLQMCFETEERARR 127
               N+RK    + +  +        +     +  D V C    F HL      +   R 
Sbjct: 96  KERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRL 155

Query: 128 LLQNVSSLLKPGGYFLGITPDSSTIWAK---------YQKNVEAYHNRSSSMKPNLVPNC 178
            L+N++S+++PGG  +    +   I +          Y K+       +S +  N   + 
Sbjct: 156 ALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHM 215

Query: 179 IRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQ 238
           +  + Y +              K++L         +       S   L +EA     +  
Sbjct: 216 VTLD-YTVQVPGAGRDGAPGFSKFRL---------SYYPHCLASFTELVQEAFGGRCQHS 265

Query: 239 NLNEFYDDNRHADE 252
            L +F         
Sbjct: 266 VLGDFKPYRPGQAY 279

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 4e-07
 Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 31/181 (17%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
             +L   A+            T+ D+  G  V       +   +    D       E   
Sbjct: 38  PWKLRCLAQ--TFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGR 95

Query: 73  TWENQRKNF-----------------------------IAEFFEADPCAENFETQMQEKA 103
             + +   F                             +      D              
Sbjct: 96  WLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAP 155

Query: 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAY 163
             AD +     L+         +R L ++++LL+PGG+ L I     + +   +  +   
Sbjct: 156 LPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVV 215

Query: 164 H 164
            
Sbjct: 216 P 216

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.1 bits (105), Expect = 3e-06
 Identities = 40/231 (17%), Positives = 66/231 (28%), Gaps = 19/231 (8%)

Query: 7   PRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSG 66
            R         +F +    +        V DL CG G+   +            +     
Sbjct: 17  RRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLEL----------AERGYEV 66

Query: 67  IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERAR 126
           +G        +     A+           +       N+ D V  F    + +  EE  R
Sbjct: 67  VGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFST-IMYFDEEDLR 125

Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI 186
           +L   V+  LKPGG F+   P     W    ++     N     +  ++ +    E  V 
Sbjct: 126 KLFSKVAEALKPGGVFITDFPC----WFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQ 181

Query: 187 TFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237
               +     L        F  D         + P  +RL  E   E V+I
Sbjct: 182 KLRFKRLVQILRPNGEVKAFLVDDELNI----YTPREVRLLAEKYFEKVKI 228

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 29/185 (15%)

Query: 7   PRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSG 66
           P +E+    L    K            T+ D+  G  +           +    D     
Sbjct: 29  PEAEMLKFNLECLHK--TFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRN 86

Query: 67  IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA----------------------- 103
             E     + +   +         C     +   E+                        
Sbjct: 87  REELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLA 146

Query: 104 ----NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN 159
                 AD V     ++    + +  R  L N++SLLKPGG+ +         +   ++ 
Sbjct: 147 PAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKRE 206

Query: 160 VEAYH 164
                
Sbjct: 207 FSCVA 211

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 28/198 (14%), Positives = 57/198 (28%), Gaps = 19/198 (9%)

Query: 13  HHRLYEFAKTALIKIYS-----HPYVTVCDLYCGAGV-------DVDKWETALIANYIGI 60
           H  + EF    L  I          + +  +  GAG         V      +  N   +
Sbjct: 17  HQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVV 76

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQADLVCCFQHLQMC 118
           + +   I + ++           +F      +  ++++M E  +  + D +   Q L   
Sbjct: 77  EPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV 136

Query: 119 FETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNC 178
            +        L+   SLL      L I    S+ W K  K           +   +  + 
Sbjct: 137 KDIPA----TLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKY-GSRFPQDDLCQYITSDD 191

Query: 179 IRSESYVITFEVEEEKFP 196
           +      +  + E     
Sbjct: 192 LTQMLDNLGLKYECYDLL 209

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 11/135 (8%)

Query: 34  TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93
            + D  CG G     +   ++   +      +GI          R+ F    ++++    
Sbjct: 30  HIVDYGCGYG-----YLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFL-- 82

Query: 94  NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW 153
             +    E  ++ D+  C                +LQ +   +K GG  +   P   +  
Sbjct: 83  EGDATEIELNDKYDIAICH----AFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNM 138

Query: 154 AKYQKNVEAYHNRSS 168
           A Y  + E       
Sbjct: 139 ASYLLDGEKQSEFIQ 153

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 7/143 (4%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI 82
           AL    S     V ++  G  +   K + A I  +  I+         RD W  ++ + +
Sbjct: 45  ALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKV 103

Query: 83  AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142
                                   D     +      +       +  +   LLKPGG  
Sbjct: 104 IPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNF----IKNHAFRLLKPGGVL 159

Query: 143 L--GITPDSSTIWAKYQKNVEAY 163
               +T     + +KY      +
Sbjct: 160 TYCNLTSWGELMKSKYSDITIMF 182

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 22/230 (9%)

Query: 8   RSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGI 67
           R+++ + +  +F         +  +    DL CG G       T  +        A    
Sbjct: 15  RADVDYKKWSDFII-EKCVENNLVFDDYLDLACGTG-----NLTENLCPKFKNTWAVDLS 68

Query: 68  GEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARR 127
            E     EN+ ++   +   A     N     +          C           +  ++
Sbjct: 69  QEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLI-----TCCLDSTNYIIDSDDLKK 123

Query: 128 LLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVIT 187
             + VS+ LK GG F+        +      N   Y +                  Y+  
Sbjct: 124 YFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISF 183

Query: 188 FEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237
           F  + E +  F ++++ +                 + +  +   L  ++ 
Sbjct: 184 FVRDGEFYKRFDEEHEERA-----------YKEEDIEKYLKHGQLNILDK 222

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 30/165 (18%), Positives = 49/165 (29%), Gaps = 22/165 (13%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
           HH L    KTA  +        V D+  GAG       +  +   IG+D           
Sbjct: 2   HHSLGLMIKTAECR----AEHRVLDIGAGAG-HTALAFSPYVQECIGVDA---------- 46

Query: 73  TWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNV 132
             +   +   +   E       F+    E     D        +         R+ ++ V
Sbjct: 47  -TKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREV 105

Query: 133 SSLLKPGGYFLGIT------PDSSTIWAKYQKNVEAYHNRSSSMK 171
           + +LK  G FL +       P          +  +  H R SS+ 
Sbjct: 106 ARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLS 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	100.0
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.88
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.88
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.86
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.86
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.86
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.85
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.84
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.83
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.83
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.83
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.82
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.81
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.81
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.8
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.79
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.79
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.79
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.78
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.76
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.76
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.75
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.74
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.72
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.72
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.7
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.7
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.69
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.68
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.68
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.67
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.64
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.63
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.6
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.57
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.56
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.56
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.55
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.55
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.54
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.52
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.51
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.49
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.47
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.47
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.47
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.45
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.43
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.41
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.4
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.4
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.39
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.39
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.38
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.35
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.34
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.32
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.27
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.2
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.2
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.19
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.18
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.17
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.16
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.15
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.06
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.05
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.05
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.03
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.96
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.91
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.84
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.8
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.75
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.67
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.66
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.66
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.65
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.6
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.59
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.58
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.58
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.57
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.56
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.53
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.52
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.52
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.5
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.37
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.34
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.31
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.3
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.27
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.24
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.21
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.17
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.0
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.94
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.81
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.98
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.9
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.89
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.76
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.75
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.73
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.57
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.55
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.46
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.39
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.34
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.31
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.14
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.12
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.06
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.0
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.86
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.8
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	95.75
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	95.46
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.19
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.75
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.73
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.72
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.45
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.3
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	94.15
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.09
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.07
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.7
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	93.69
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.6
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.06
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.96
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	92.58
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.53
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	92.29
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.11
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.1
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.82
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	91.74
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.65
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.19
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	90.91
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.59
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	90.57
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.1
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.04
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	89.02
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	88.9
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	88.77
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	88.52
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.36
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	87.24
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	86.45
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	85.98
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	85.56
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	85.45
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	85.1
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	84.62
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	84.04
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	83.81
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	83.36
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	82.91
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	82.37
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	82.35
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	81.16
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	81.03
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	80.71
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	80.03

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=100.00  E-value=3.3e-39  Score=270.49  Aligned_cols=219  Identities=25%  Similarity=0.440  Sum_probs=189.9

Q ss_pred             HHhHHHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC
Q 025059           13 HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA   92 (258)
Q Consensus        13 ~~~~~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~   92 (258)
                      .+.++||+|+.||+.+.+++.+|||||||+|+++.+++..+..+|+|+|+|+.|++.|++++...+...++.|.++|+..
T Consensus         6 ~r~~~N~vK~~lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~   85 (252)
T d1ri5a_           6 IRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG   85 (252)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT
T ss_pred             HHHHHHHHHHHHHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhh
Confidence            34578999999999999999999999999999999999888889999999999999999999887666689999999976


Q ss_pred             CchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCC
Q 025059           93 ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKP  172 (258)
Q Consensus        93 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (258)
                      .++.     ..++||+|+|++++||++.+.+++..+++++.++|+|||+|++++|+.+.+...+.+.             
T Consensus        86 ~~~~-----~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~-------------  147 (252)
T d1ri5a_          86 RHMD-----LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQG-------------  147 (252)
T ss_dssp             SCCC-----CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHT-------------
T ss_pred             hccc-----ccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhc-------------
Confidence            5542     3678999999999999999999999999999999999999999999998888776541             


Q ss_pred             CCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChhHHHHhccCCCc
Q 025059          173 NLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRHADE  252 (258)
Q Consensus       173 ~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~~~~~~~~~~~  252 (258)
                       .+    .++.|++.++.........+..|.+++.+.+.++.||+++++.|.++++++||++++..+|.+||++......
T Consensus       148 -~~----~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~E~l~~~~~l~~~~~~~g~~lv~~~~f~~~~~~~~~~~~  222 (252)
T d1ri5a_         148 -RM----SNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEGRRNP  222 (252)
T ss_dssp             -CC----BCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHHHHHHHHHHTCH
T ss_pred             -cc----CCceEEEecccccCCcCcCceEEEEEcccccccCcccccCHHHHHHHHHHcCCEEEEEecHHHHHHHHhhhCH
Confidence             22    3456888887654444556788999999988889999999999999999999999999999999987765443


Q ss_pred             cc
Q 025059          253 CW  254 (258)
Q Consensus       253 ~~  254 (258)
                      .+
T Consensus       223 ~~  224 (252)
T d1ri5a_         223 EL  224 (252)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.88  E-value=5.9e-22  Score=162.05  Aligned_cols=110  Identities=16%  Similarity=0.218  Sum_probs=94.0

Q ss_pred             HHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      ..-++++.+|||||||+|..+..++..+. +++|+|+|+.|++.|+++....+.. ++.|.++|+.+.++      ++++
T Consensus        10 ~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~~~l~~------~~~~   81 (231)
T d1vl5a_          10 IAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPF------TDER   81 (231)
T ss_dssp             HHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCS------CTTC
T ss_pred             hcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccc-cccccccccccccc------cccc
Confidence            34467889999999999999999987765 8999999999999999998766532 78999999988776      6899


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ||+|+|..++|++    ++...+++++.++|+|||++++..+
T Consensus        82 fD~v~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~  119 (231)
T d1vl5a_          82 FHIVTCRIAAHHF----PNPASFVSEAYRVLKKGGQLLLVDN  119 (231)
T ss_dssp             EEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccccc----CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            9999999999973    3467899999999999999998744

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.88  E-value=2.7e-22  Score=166.07  Aligned_cols=117  Identities=19%  Similarity=0.244  Sum_probs=97.6

Q ss_pred             HHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      .....++.+|||+|||+|..+..+++.+. +++|+|+|+.|++.|+++....+.  ++.++++|+.+.++       +++
T Consensus        32 ~~~~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~-------~~~  101 (246)
T d1y8ca_          32 VENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI-------NRK  101 (246)
T ss_dssp             HTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC-------SCC
T ss_pred             HHhCCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc--cceeeccchhhhcc-------ccc
Confidence            34455678999999999999999988877 899999999999999999877644  78999999876543       578


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~  152 (258)
                      ||+|+|.+...+.+.+.+++..++++++++|+|||.|++.+++...+
T Consensus       102 fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  148 (246)
T d1y8ca_         102 FDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKL  148 (246)
T ss_dssp             EEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHH
T ss_pred             ccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHHH
Confidence            99999875443346778899999999999999999999987766443

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=2.7e-21  Score=158.81  Aligned_cols=107  Identities=19%  Similarity=0.261  Sum_probs=93.7

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      -++|+.+|||||||+|..+..++..+. +++|+|+|+.|++.|+++....+.. ++.++++|+.+.++      ++++||
T Consensus        13 ~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~~~------~~~~fD   84 (234)
T d1xxla_          13 ECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPF------PDDSFD   84 (234)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCS------CTTCEE
T ss_pred             CCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccc-cccccccccccccc------cccccc
Confidence            356999999999999999999988764 9999999999999999998776542 69999999988777      689999


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +|+|..+++++    ++...+++++.++|||||+++++.
T Consensus        85 ~v~~~~~l~~~----~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          85 IITCRYAAHHF----SDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             EEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeeeeceeecc----cCHHHHHHHHHHeeCCCcEEEEEE
Confidence            99999999873    347799999999999999998873

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=5.3e-21  Score=155.33  Aligned_cols=119  Identities=23%  Similarity=0.308  Sum_probs=103.0

Q ss_pred             HHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      .++.++++++.+|||||||+|.++..+++.+. +++|+|+|+.|++.|+++....+.  .+.++++|+.+.++      +
T Consensus        29 ~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~------~   99 (226)
T d1ve3a1          29 PLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSF------E   99 (226)
T ss_dssp             HHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCS------C
T ss_pred             HHHHHhcCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccc--cccccccccccccc------c
Confidence            35677888999999999999999999988765 899999999999999999877643  67889999988776      6


Q ss_pred             CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~  152 (258)
                      +++||+|+|..+++++  +..+...+++++.++|||||.+++..++...+
T Consensus       100 ~~~fD~I~~~~~l~~~--~~~d~~~~l~~i~~~LkpgG~lii~~~~~~~~  147 (226)
T d1ve3a1         100 DKTFDYVIFIDSIVHF--EPLELNQVFKEVRRVLKPSGKFIMYFTDLREL  147 (226)
T ss_dssp             TTCEEEEEEESCGGGC--CHHHHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred             CcCceEEEEecchhhC--ChhHHHHHHHHHHHHcCcCcEEEEEEcCchhh
Confidence            8999999999999983  45678899999999999999999998875443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.86  E-value=4.6e-21  Score=156.53  Aligned_cols=128  Identities=19%  Similarity=0.139  Sum_probs=105.1

Q ss_pred             cchHHhHHHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEE
Q 025059           10 ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFF   86 (258)
Q Consensus        10 ~~~~~~~~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~   86 (258)
                      ..|.++.....-..++..+.+|+.+|||||||+|..+..+++.   +..+++|+|+|+.|++.|+++....+....+.+.
T Consensus        18 ~iP~Y~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~   97 (225)
T d1im8a_          18 SVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEIL   97 (225)
T ss_dssp             HSTTHHHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEE
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhc
Confidence            3465665555556677888899999999999999999888764   3459999999999999999999877665578888


Q ss_pred             EcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059           87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus        87 ~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ++|..+.        +...+|+|+|.+++|+  .+.++...+++++.++|+|||.+++..+
T Consensus        98 ~~d~~~~--------~~~~~d~i~~~~~l~~--~~~~d~~~~l~~i~~~LkpgG~li~~~~  148 (225)
T d1im8a_          98 CNDIRHV--------EIKNASMVILNFTLQF--LPPEDRIALLTKIYEGLNPNGVLVLSEK  148 (225)
T ss_dssp             CSCTTTC--------CCCSEEEEEEESCGGG--SCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cchhhcc--------ccccceeeEEeeeccc--cChhhHHHHHHHHHHhCCCCceeecccc
Confidence            8887553        3468999999999988  4567788999999999999999998743

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3e-21  Score=160.24  Aligned_cols=144  Identities=17%  Similarity=0.117  Sum_probs=108.0

Q ss_pred             ccCCCCCcchHHhHHHHHHHHHHHHhcC---CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCC
Q 025059            3 VLPIPRSELTHHRLYEFAKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK   79 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~k~~li~~~~~---~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~   79 (258)
                      +|.+.....+.....+|+...+.+.+..   ++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|+++++....
T Consensus        20 ~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~   99 (257)
T d2a14a1          20 YYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPG   99 (257)
T ss_dssp             HCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTT
T ss_pred             HhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccc
Confidence            4666666667777788988888776543   6789999999999988777766666899999999999999998875432


Q ss_pred             Cce-----------------------------eEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHH
Q 025059           80 NFI-----------------------------AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQ  130 (258)
Q Consensus        80 ~~~-----------------------------~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~  130 (258)
                      ...                             ......++......  .+.+.++||+|++.+++|++....++...+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~  177 (257)
T d2a14a1         100 AYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPL--APAVLPLADCVLTLLAMECACCSLDAYRAALC  177 (257)
T ss_dssp             CCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTT--TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHH
T ss_pred             cchhhhHHHHHHHhccccchHHHHHHHHhhhhhccccccccccccc--ccccCCcccEEeehhhHHHhcccHHHHHHHHH
Confidence            110                             01222222221111  11157899999999999998888889999999


Q ss_pred             HHHhcccCCcEEEEEEcC
Q 025059          131 NVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       131 ~i~~~LkpgG~~i~~~~~  148 (258)
                      ++.++|||||++++..+.
T Consensus       178 ~i~~~LkpGG~li~~~~~  195 (257)
T d2a14a1         178 NLASLLKPGGHLVTTVTL  195 (257)
T ss_dssp             HHHTTEEEEEEEEEEEES
T ss_pred             HHHhccCCCcEEEEEEec
Confidence            999999999999997553

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.84  E-value=2.3e-20  Score=157.42  Aligned_cols=110  Identities=12%  Similarity=0.016  Sum_probs=95.8

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ++++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++....+...++++.++|+.+.++      ++++||+
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~------~~~sfD~  138 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC------EDNSYDF  138 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS------CTTCEEE
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccc------cccccch
Confidence            5689999999999999999988764448999999999999999999887666689999999988777      6789999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++..+++++    ++...+++++.++|||||.++++.+.
T Consensus       139 V~~~~~l~h~----~d~~~~l~~~~~~LkpgG~l~~~~~~  174 (282)
T d2o57a1         139 IWSQDAFLHS----PDKLKVFQECARVLKPRGVMAITDPM  174 (282)
T ss_dssp             EEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hhccchhhhc----cCHHHHHHHHHHhcCCCcEEEEEEee
Confidence            9999998873    34678999999999999999987543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.9e-20  Score=152.59  Aligned_cols=107  Identities=13%  Similarity=0.126  Sum_probs=92.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||||||+|.++..++.....+|+|+|+|+.|++.|++++...+.. ++.|+++|+.+.++      ++++||+|+
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~~~~~------~~~~fD~I~  132 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDFTP------EPDSYDVIW  132 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGCCC------CSSCEEEEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccc-cccccccccccccc------ccccccccc
Confidence            56899999999999998887666669999999999999999998765322 67999999877665      578999999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +..++|+  .+.++...++++++++|+|||.+++..
T Consensus       133 ~~~~l~h--~~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         133 IQWVIGH--LTDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             EESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccc--chhhhhhhHHHHHHHhcCCcceEEEEE
Confidence            9999998  345677899999999999999999874

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.83  E-value=6.5e-21  Score=155.74  Aligned_cols=110  Identities=11%  Similarity=0.165  Sum_probs=91.3

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||||||+|..+..++..+. +++|+|+|+++++.|+++...     ++.++++|+.+.++       +++||+|+
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~~-----~~~~~~~~~~~~~~-------~~~fD~I~   86 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQL-------PRRYDNIV   86 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCC-------SSCEEEEE
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccccc-----cccccccccccccc-------cccccccc
Confidence            456899999999999999877665 899999999999999887542     68899998765443       57999999


Q ss_pred             eccccccccCCHHHHHHHHHHHH-hcccCCcEEEEEEcCchHHHHHHH
Q 025059          111 CFQHLQMCFETEERARRLLQNVS-SLLKPGGYFLGITPDSSTIWAKYQ  157 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~-~~LkpgG~~i~~~~~~~~~~~~~~  157 (258)
                      |..+++|+    ++...++.++. ++|+|||.+++++|+...+...+.
T Consensus        87 ~~~vleh~----~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~  130 (225)
T d2p7ia1          87 LTHVLEHI----DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIA  130 (225)
T ss_dssp             EESCGGGC----SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHH
T ss_pred             ccceeEec----CCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHH
Confidence            99999874    34677889997 899999999999999877665543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.83  E-value=3.5e-20  Score=153.20  Aligned_cols=110  Identities=28%  Similarity=0.377  Sum_probs=93.3

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||||||+|..+..+++.+. +++|+|+|+.|++.|+++.+..+.  ++.+.++|+.+.++       +++||+
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~-------~~~fD~  108 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF-------KNEFDA  108 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC-------CSCEEE
T ss_pred             CCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc--cchheehhhhhccc-------ccccch
Confidence            34678999999999999999988876 899999999999999999887644  78999999977665       468999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |+|.++.++. .+.++...+|+++.++|||||++++..++.
T Consensus       109 I~~~~~~~~~-~~~~~~~~~L~~~~~~LkpgG~lii~~~~~  148 (251)
T d1wzna1         109 VTMFFSTIMY-FDEEDLRKLFSKVAEALKPGGVFITDFPCW  148 (251)
T ss_dssp             EEECSSGGGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred             Hhhhhhhhhc-CChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence            9997644432 457788999999999999999999988764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=4.4e-20  Score=148.58  Aligned_cols=102  Identities=17%  Similarity=0.178  Sum_probs=86.5

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .|+.+|||||||+|.++..+.     +++|+|+|+.|++.|+++        ++.++++|+.+.++      ++++||+|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~------~~~~fD~I   95 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPL------KDESFDFA   95 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCS------CTTCEEEE
T ss_pred             CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--------cccccccccccccc------cccccccc
Confidence            356789999999999887762     568999999999999864        57899999988776      67899999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHH
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~  154 (258)
                      +|..+++++    ++...+++++.++|+|||.+++..++......
T Consensus        96 ~~~~~l~h~----~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~  136 (208)
T d1vlma_          96 LMVTTICFV----DDPERALKEAYRILKKGGYLIVGIVDRESFLG  136 (208)
T ss_dssp             EEESCGGGS----SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHH
T ss_pred             ccccccccc----cccccchhhhhhcCCCCceEEEEecCCcchhH
Confidence            999999984    34678999999999999999999998765443

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=2.2e-20  Score=157.42  Aligned_cols=173  Identities=14%  Similarity=0.151  Sum_probs=121.4

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      -++|+.+|||||||+|+.+..+++....+|+|+|+|+++++.|+++....++...+.+...|...         .+++||
T Consensus        49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~---------~~~~fD  119 (280)
T d2fk8a1          49 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED---------FAEPVD  119 (280)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG---------CCCCCS
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh---------hccchh
Confidence            36699999999999999998888774459999999999999999999888776677777777432         357999


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVIT  187 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~  187 (258)
                      .|++..++.+  .+.+....+++++.++|||||.+++.+................                        .
T Consensus       120 ~i~si~~~eh--~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~------------------------~  173 (280)
T d2fk8a1         120 RIVSIEAFEH--FGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKL------------------------S  173 (280)
T ss_dssp             EEEEESCGGG--TCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHH------------------------H
T ss_pred             hhhHhhHHHH--hhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhccccc------------------------c
Confidence            9999998876  3446678999999999999999998742211111000000000                        0


Q ss_pred             ecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChhHHHH
Q 025059          188 FEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD  245 (258)
Q Consensus       188 f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~~~~  245 (258)
                      ++.  .....|-.+|.|        +..++++.+.+.+.++++||+++...+|...|.
T Consensus       174 ~~~--~~~~dfI~kyif--------Pgg~lPS~~~l~~~~e~aGf~v~~~~~~~~hYa  221 (280)
T d2fk8a1         174 FET--ARFIKFIVTEIF--------PGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYI  221 (280)
T ss_dssp             HHH--HHHHHHHHHHTS--------TTCCCCCHHHHHHHHHHTTCBCCCCEECHHHHH
T ss_pred             ccc--ccccchhhhhcc--------CCCcccchHhhhhhHHhhccccceeeecccCHH
Confidence            000  000011112222        223578899999999999999998888876554

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=7.5e-20  Score=150.29  Aligned_cols=113  Identities=17%  Similarity=0.176  Sum_probs=92.8

Q ss_pred             HHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      .++..+.+++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|+++..       ..++++|+.+.++      +
T Consensus        34 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~-------~~~~~~~~~~l~~------~   99 (246)
T d2avna1          34 SFLEEYLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-------KNVVEAKAEDLPF------P   99 (246)
T ss_dssp             HHHHHHCCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-------SCEEECCTTSCCS------C
T ss_pred             HHHHHhcCCCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc-------ccccccccccccc------c
Confidence            45567778889999999999999999987765 89999999999999998742       2367889888776      6


Q ss_pred             CCceeEEEecc-ccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHH
Q 025059          103 ANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (258)
Q Consensus       103 ~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~  153 (258)
                      +++||+|+|.+ ++|+. .   +...+++++.++|||||++++++|+...+.
T Consensus       100 ~~~fD~ii~~~~~~~~~-~---d~~~~l~~i~r~Lk~gG~~ii~~~~~~~~~  147 (246)
T d2avna1         100 SGAFEAVLALGDVLSYV-E---NKDKAFSEIRRVLVPDGLLIATVDNFYTFL  147 (246)
T ss_dssp             TTCEEEEEECSSHHHHC-S---CHHHHHHHHHHHEEEEEEEEEEEEBHHHHH
T ss_pred             cccccceeeecchhhhh-h---hHHHHHHHHHhhcCcCcEEEEEECCHHHHH
Confidence            79999999865 56662 2   356789999999999999999998865443

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.80  E-value=2.4e-19  Score=149.03  Aligned_cols=105  Identities=17%  Similarity=0.150  Sum_probs=91.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|..+..++......|+++|+|+.|++.|++++...+   .+.|.++|+.+.++      ++++||+|+
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~---~~~~~~~d~~~~~~------~~~~fD~I~  163 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP---VGKFILASMETATL------PPNTYDLIV  163 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSS---EEEEEESCGGGCCC------CSSCEEEEE
T ss_pred             CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccc---cceeEEcccccccc------CCCccceEE
Confidence            568999999999999988877666689999999999999999886543   68999999876655      578999999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+.++|+  .+.+++..+++++.++|+|||.+++..
T Consensus       164 ~~~vl~h--l~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         164 IQWTAIY--LTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             EESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeccccc--cchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            9999998  456778899999999999999999864

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.79  E-value=2.5e-19  Score=142.16  Aligned_cols=122  Identities=13%  Similarity=0.056  Sum_probs=97.8

Q ss_pred             HHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCC-----------CceeEEEE
Q 025059           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-----------NFIAEFFE   87 (258)
Q Consensus        19 ~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-----------~~~~~~~~   87 (258)
                      +++..+-..-.+|+.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++.+....           .....+.+
T Consensus         8 ~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (201)
T d1pjza_           8 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC   86 (201)
T ss_dssp             HHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred             HHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence            344444455567899999999999999999999887 999999999999999998864321           22457888


Q ss_pred             cCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059           88 ADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      +|+.+.+..     ....||+|++..++++  ...+....+++++.++|||||.+++....
T Consensus        87 ~d~~~l~~~-----~~~~~D~i~~~~~l~~--l~~~~~~~~~~~i~~~LkpgG~l~l~~~~  140 (201)
T d1pjza_          87 GDFFALTAR-----DIGHCAAFYDRAAMIA--LPADMRERYVQHLEALMPQACSGLLITLE  140 (201)
T ss_dssp             ECCSSSTHH-----HHHSEEEEEEESCGGG--SCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred             ccccccccc-----cccceeEEEEEeeeEe--cchhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence            888765432     3468999999999887  45677889999999999999998877443

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.4e-19  Score=148.09  Aligned_cols=109  Identities=20%  Similarity=0.233  Sum_probs=94.2

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      +.|+.+|||||||+|..+..+++....+++|+|+|+.|++.|+++....+...+++|.++|+.+..       .+++||+
T Consensus        31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~-------~~~~fD~  103 (245)
T d1nkva_          31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-------ANEKCDV  103 (245)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-------CSSCEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-------ccCceeE
Confidence            568999999999999999988876446999999999999999999888876667999999987642       4789999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |+|..+++++    .+...++++++++|||||.+++..+.
T Consensus       104 v~~~~~~~~~----~d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_         104 AACVGATWIA----GGFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             EEEESCGGGT----SSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             EEEEehhhcc----CCHHHHHHHHHHHcCcCcEEEEEecc
Confidence            9999988873    34678999999999999999998553

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7.5e-19  Score=146.72  Aligned_cols=132  Identities=16%  Similarity=0.121  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHhcC---CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCc-----------
Q 025059           16 LYEFAKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-----------   81 (258)
Q Consensus        16 ~~~~~k~~li~~~~~---~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-----------   81 (258)
                      +.+|....+-+.+..   ++.+|||+|||+|......+.....+|+|+|+|+.|++.+++++......+           
T Consensus        36 ~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~  115 (263)
T d2g72a1          36 VGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACL  115 (263)
T ss_dssp             HHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhh
Confidence            456666666555433   678999999999987665555556689999999999999998765432111           


Q ss_pred             ------------------eeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059           82 ------------------IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus        82 ------------------~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                                        ......+|+.........+...++||+|++.+++|++..+.++...+++++.++|||||+++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li  195 (263)
T d2g72a1         116 IEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL  195 (263)
T ss_dssp             HHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             hccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEE
Confidence                              12345567655433222222457899999999999988888899999999999999999999


Q ss_pred             EEEc
Q 025059          144 GITP  147 (258)
Q Consensus       144 ~~~~  147 (258)
                      +..+
T Consensus       196 ~~~~  199 (263)
T d2g72a1         196 LIGA  199 (263)
T ss_dssp             EEEE
T ss_pred             Eecc
Confidence            8744

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=6.7e-18  Score=142.53  Aligned_cols=185  Identities=16%  Similarity=0.103  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh
Q 025059           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (258)
Q Consensus        18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   97 (258)
                      +-++..+-..-+++|.+|||||||.|+.+..++.....+++|+++|+++++.|+++....++..++.+...|..   .  
T Consensus        48 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~--  122 (291)
T d1kpia_          48 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---E--  122 (291)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---G--
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---c--
Confidence            43443333334669999999999999999988876445999999999999999999998777667888888742   2  


Q ss_pred             hhhhcCCceeEEEeccccccccC-----CHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCC
Q 025059           98 QMQEKANQADLVCCFQHLQMCFE-----TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKP  172 (258)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~-----~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (258)
                          .+++||.|++..++.++-.     ..+..+.+++.+.++|||||.+++.+.....-.......      ..     
T Consensus       123 ----~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~------~~-----  187 (291)
T d1kpia_         123 ----FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELG------LT-----  187 (291)
T ss_dssp             ----CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHT------CC-----
T ss_pred             ----cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhcc------CC-----
Confidence                5789999999988766432     135688999999999999999998744321101000000      00     


Q ss_pred             CCCCCcccCeeEEEEecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChhHHHH
Q 025059          173 NLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD  245 (258)
Q Consensus       173 ~~~g~~~~~~~~~i~f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~~~~  245 (258)
                        -+.     .+        .....|-.+|.|        +..++++...+...++++||+++...++...|.
T Consensus       188 --~p~-----~~--------~~~~~fi~kyiF--------pgg~lps~~~~~~~~e~~gl~v~~~~~~~~hYa  237 (291)
T d1kpia_         188 --SPM-----SL--------LRFIKFILTEIF--------PGGRLPRISQVDYYSSNAGWKVERYHRIGANYV  237 (291)
T ss_dssp             --CCH-----HH--------HHHHHHHHHHTC--------TTCCCCCHHHHHHHHHHHTCEEEEEEECGGGHH
T ss_pred             --Cch-----hh--------cccchHHHHHhc--------CCCCCCCHHHHHhhhcccccccceeeeccccHH
Confidence              000     00        000001112322        223578899999999999999998888877664

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=2.1e-17  Score=139.03  Aligned_cols=173  Identities=17%  Similarity=0.177  Sum_probs=121.9

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      -+.||.+|||||||.|+.+..+++....+|+|+++|+..++.|+++....+...++.+..+|...         .+++||
T Consensus        59 ~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~---------~~~~fD  129 (285)
T d1kpga_          59 GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ---------FDEPVD  129 (285)
T ss_dssp             TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG---------CCCCCS
T ss_pred             CCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc---------cccccc
Confidence            45699999999999999999887774459999999999999999999887776789999998633         357899


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCeeEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVIT  187 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~  187 (258)
                      .|++..++.++  .......+++++.++|+|||.+++.+...........        +.       .+..         
T Consensus       130 ~i~si~~~eh~--~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~--------~~-------~~~~---------  183 (285)
T d1kpga_         130 RIVSIGAFEHF--GHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHE--------RG-------LPMS---------  183 (285)
T ss_dssp             EEEEESCGGGT--CTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTT--------TT-------CSCH---------
T ss_pred             ceeeehhhhhc--CchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhcc--------cc-------CCcc---------
Confidence            99998877663  2355678999999999999999987443211100000        00       0000         


Q ss_pred             ecccCCCCCCceeceEEEEccCccCCCccccchHHHHHHHHHcCcEEEEeCChhHHHH
Q 025059          188 FEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD  245 (258)
Q Consensus       188 f~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~Gf~~~~~~~f~~~~~  245 (258)
                      +..  .....|-.+|.|        +...+++...+.++++++||++++..++...|.
T Consensus       184 ~~~--~~~~~fi~kyiF--------pgg~lPsl~~~~~~~e~agf~v~~~~~~~~hYa  231 (285)
T d1kpga_         184 FTF--ARFLKFIVTEIF--------PGGRLPSIPMVQECASANGFTVTRVQSLQPHYA  231 (285)
T ss_dssp             HHH--HHHHHHHHHHTS--------TTCCCCCHHHHHHHHHTTTCEEEEEEECHHHHH
T ss_pred             hhh--hchhhHHHHHhc--------cCCCCCChhhHHHHHHHhchhhcccccchhhHH
Confidence            000  000011122322        123467889999999999999999988887664

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.76  E-value=5.5e-18  Score=135.37  Aligned_cols=107  Identities=16%  Similarity=0.145  Sum_probs=91.5

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||||||+|.++..+++.+. +++|+|+|+.|++.|+++....+.. .+.+...|+....+       +++||+|+
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~-------~~~fD~I~  100 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTF-------DGEYDFIL  100 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCC-------CCCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccc-------cccccEEE
Confidence            345999999999999999988876 8999999999999999988776543 57889999876553       68999999


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |..++|+  .+.+....+++++.++|+|||++++....
T Consensus       101 ~~~~~~~--~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1         101 STVVMMF--LEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             EESCGGG--SCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             Eeeeeec--CCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            9999987  34567889999999999999999887543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=5.4e-18  Score=141.83  Aligned_cols=110  Identities=21%  Similarity=0.334  Sum_probs=91.4

Q ss_pred             HHHHHHhcCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh
Q 025059           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (258)
Q Consensus        22 ~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (258)
                      ..+......++.+|||+|||+|..+..++... ...++|+|+|+.|++.|+++..      ++.+.++|+.+.++     
T Consensus        75 ~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~------~~~~~~~d~~~l~~-----  143 (268)
T d1p91a_          75 AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP------QVTFCVASSHRLPF-----  143 (268)
T ss_dssp             HHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTSCSB-----
T ss_pred             HHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc------cccceeeehhhccC-----
Confidence            33444444578899999999999999998874 3589999999999999988753      67899999988887     


Q ss_pred             hcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHH
Q 025059          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (258)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~  154 (258)
                       ++++||+|++.+++++           ++++.|+|||||.+++++|+...+..
T Consensus       144 -~~~sfD~v~~~~~~~~-----------~~e~~rvLkpgG~l~~~~p~~~~l~e  185 (268)
T d1p91a_         144 -SDTSMDAIIRIYAPCK-----------AEELARVVKPGGWVITATPGPRHLME  185 (268)
T ss_dssp             -CTTCEEEEEEESCCCC-----------HHHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred             -CCCCEEEEeecCCHHH-----------HHHHHHHhCCCcEEEEEeeCCcchHH
Confidence             6899999999887765           46789999999999999998866543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=2.2e-17  Score=139.57  Aligned_cols=119  Identities=21%  Similarity=0.252  Sum_probs=89.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCc---eeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF---IAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      ++.+|||+|||+|..+..++..+. +|+|+|+|+.||+.|+++....+...   ...+..+|...  +....+ ..++||
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~fd  131 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT--LDKDVP-AGDGFD  131 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG--HHHHSC-CTTCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc--cccccC-CCCCce
Confidence            567999999999999999998876 89999999999999999886653211   23445555422  111111 357899


Q ss_pred             EEEecc-ccccccC---CHHHHHHHHHHHHhcccCCcEEEEEEcCchHHH
Q 025059          108 LVCCFQ-HLQMCFE---TEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (258)
Q Consensus       108 ~V~~~~-~l~~~~~---~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~  153 (258)
                      +|+|.+ +++|+..   ..++...+++++.++|||||+|+++.++.+.+.
T Consensus       132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~  181 (292)
T d1xvaa_         132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYIL  181 (292)
T ss_dssp             EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHH
T ss_pred             EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCHHHHh
Confidence            998865 5665432   246788999999999999999999988876554

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.6e-17  Score=138.19  Aligned_cols=143  Identities=16%  Similarity=0.154  Sum_probs=98.6

Q ss_pred             cchHHhHHHHHHHHHHHHhc-----CCCCEEEEEcCCCCccHHHHHHc------C-CCeEEEEecChhHHHHHHHHHHhc
Q 025059           10 ELTHHRLYEFAKTALIKIYS-----HPYVTVCDLYCGAGVDVDKWETA------L-IANYIGIDVATSGIGEARDTWENQ   77 (258)
Q Consensus        10 ~~~~~~~~~~~k~~li~~~~-----~~~~~VLDlGcG~G~~~~~~~~~------~-~~~v~gvD~s~~~l~~a~~~~~~~   77 (258)
                      .+.+..+++|+...+.....     ++..+|||||||+|..+..++..      + ...++|+|+|+.|++.|+++....
T Consensus        14 s~~~~~~~~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~   93 (280)
T d1jqea_          14 STEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKI   93 (280)
T ss_dssp             BSHHHHHHHHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhc
Confidence            34445567888776655432     24458999999999987766543      1 136899999999999999998654


Q ss_pred             CCCcee--EEEEcCCCCCchhhh--hhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHH
Q 025059           78 RKNFIA--EFFEADPCAENFETQ--MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (258)
Q Consensus        78 ~~~~~~--~~~~~d~~~~~~~~~--~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~  153 (258)
                      .....+  .+.+.++..  +...  ...++++||+|+|.+++|++    ++...+++++.++|+|||.++++.++....+
T Consensus        94 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~fD~I~~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~  167 (280)
T d1jqea_          94 SNLENVKFAWHKETSSE--YQSRMLEKKELQKWDFIHMIQMLYYV----KDIPATLKFFHSLLGTNAKMLIIVVSGSSGW  167 (280)
T ss_dssp             CSCTTEEEEEECSCHHH--HHHHHTTSSSCCCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEECTTSHH
T ss_pred             cccccccccchhhhhhh--hcchhcccCCCCceeEEEEccceecC----CCHHHHHHHHHhhCCCCCEEEEEEecCcchH
Confidence            321133  334433211  1110  11157899999999999984    3467899999999999999999988776555


Q ss_pred             HHHHH
Q 025059          154 AKYQK  158 (258)
Q Consensus       154 ~~~~~  158 (258)
                      .++.+
T Consensus       168 ~~l~~  172 (280)
T d1jqea_         168 DKLWK  172 (280)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.72  E-value=1.5e-17  Score=140.03  Aligned_cols=115  Identities=23%  Similarity=0.308  Sum_probs=93.5

Q ss_pred             HHHHHHh--cCCCCEEEEEcCCCCccHHHHHHc-C-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh
Q 025059           22 TALIKIY--SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (258)
Q Consensus        22 ~~li~~~--~~~~~~VLDlGcG~G~~~~~~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   97 (258)
                      +.+++..  ..++.+|||+|||+|.++..++.. + ..+|+|+|+|+.+++.|+++....+.  ++.|.++|+.+.++  
T Consensus        16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~~--   91 (281)
T d2gh1a1          16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL--   91 (281)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC--
T ss_pred             HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccccc--
Confidence            3444443  236789999999999998888765 2 25899999999999999999887643  78999999977654  


Q ss_pred             hhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                           +++||+|+|..++|++    ++...+++++.++|||||.+++..|+.
T Consensus        92 -----~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~lii~~~~~  134 (281)
T d2gh1a1          92 -----NDKYDIAICHAFLLHM----TTPETMLQKMIHSVKKGGKIICFEPHW  134 (281)
T ss_dssp             -----SSCEEEEEEESCGGGC----SSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             -----cCCceEEEEehhhhcC----CCHHHHHHHHHHHcCcCcEEEEEECCc
Confidence                 4689999999999873    235689999999999999999987763

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.70  E-value=4e-16  Score=129.12  Aligned_cols=105  Identities=18%  Similarity=0.135  Sum_probs=89.5

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      +..+|||||||+|..+..+++.. ..+++++|+ +.+++.++++....+...++.++.+|+.+.        ...+||+|
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~--------~~~~~D~v  150 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP--------LPRKADAI  150 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC--------CSSCEEEE
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh--------cccchhhe
Confidence            56899999999999999998874 458999998 679999999998877666899999998542        23579999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ++..++|+  .+.++...+|++++++|||||.+++..
T Consensus       151 ~~~~vlh~--~~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         151 ILSFVLLN--WPDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eecccccc--CCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence            99999997  456778899999999999999998873

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.5e-17  Score=132.96  Aligned_cols=112  Identities=13%  Similarity=0.061  Sum_probs=91.6

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcC----------------CCceeEEEEcCCCC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR----------------KNFIAEFFEADPCA   92 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----------------~~~~~~~~~~d~~~   92 (258)
                      .+++.+|||+|||+|.++..++..+. +|+|+|+|+.+|+.|+++.....                .+.++.+.++|+..
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            45788999999999999999999888 99999999999999998865321                12367889999755


Q ss_pred             CchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059           93 ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus        93 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      .+..     ..+.||+|....++|+  .+.+....+++++.++|+|||.+++.+..
T Consensus       122 l~~~-----~~~~fd~i~~~~~l~~--~~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         122 LPRT-----NIGKFDMIWDRGALVA--INPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             GGGS-----CCCCEEEEEESSSTTT--SCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             cccc-----ccCceeEEEEEEEEEe--ccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            4321     4689999999998887  35567889999999999999998877543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.69  E-value=1e-16  Score=126.80  Aligned_cols=119  Identities=14%  Similarity=0.111  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHh-cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059           18 EFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (258)
Q Consensus        18 ~~~k~~li~~~-~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (258)
                      .-++..++... ..++.+|||+|||+|..+..++... .+|+|+|+++.+++.|+++.+..+...+++++++|+.+... 
T Consensus        19 ~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~-   96 (186)
T d1l3ia_          19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC-   96 (186)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT-
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc-
Confidence            34444555544 3489999999999999999887654 59999999999999999999988776689999999643322 


Q ss_pred             hhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                           ....||+|++....+.       ...++..+.+.|||||.+++..+..+
T Consensus        97 -----~~~~~D~v~~~~~~~~-------~~~~~~~~~~~LkpgG~lvi~~~~~e  138 (186)
T d1l3ia_          97 -----KIPDIDIAVVGGSGGE-------LQEILRIIKDKLKPGGRIIVTAILLE  138 (186)
T ss_dssp             -----TSCCEEEEEESCCTTC-------HHHHHHHHHHTEEEEEEEEEEECBHH
T ss_pred             -----ccCCcCEEEEeCcccc-------chHHHHHHHHHhCcCCEEEEEeeccc
Confidence                 4579999999876554       56789999999999999998866543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=5e-17  Score=134.47  Aligned_cols=104  Identities=22%  Similarity=0.150  Sum_probs=85.7

Q ss_pred             HHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      +..+.+|+.+|||+|||+|.++..+++.+. +++|+|+|+.|++.|+++.+.++.  +..+.++|+..     ..  +.+
T Consensus       114 l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~~-----~~--~~~  183 (254)
T d2nxca1         114 LARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLEA-----AL--PFG  183 (254)
T ss_dssp             HHHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHHH-----HG--GGC
T ss_pred             HHhhcCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCC--ceeEEeccccc-----cc--ccc
Confidence            345678899999999999999988877775 899999999999999999887754  56788888632     11  467


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +||+|+++...       ..+..++..+.++|||||+++++
T Consensus       184 ~fD~V~ani~~-------~~l~~l~~~~~~~LkpGG~lilS  217 (254)
T d2nxca1         184 PFDLLVANLYA-------ELHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             CEEEEEEECCH-------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccchhhhcccc-------ccHHHHHHHHHHhcCCCcEEEEE
Confidence            99999986533       34678899999999999999986

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.68  E-value=5.6e-16  Score=123.23  Aligned_cols=119  Identities=16%  Similarity=0.175  Sum_probs=95.0

Q ss_pred             HHHHHHHHh-cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCC-ceeEEEEcCCCCCchhh
Q 025059           20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFET   97 (258)
Q Consensus        20 ~k~~li~~~-~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~   97 (258)
                      ....|++.. ..++.+|||+|||+|..+..++.... +++++|+|+.+++.|++++..++.. .++.+..+|+.+ .+  
T Consensus        40 ~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~--  115 (194)
T d1dusa_          40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NV--  115 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TC--
T ss_pred             HHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hh--
Confidence            344455544 34789999999999999988877654 8999999999999999998776543 368999999865 33  


Q ss_pred             hhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                          ++++||+|++...+|.   ..+....+++++.++|+|||.+++.....
T Consensus       116 ----~~~~fD~Ii~~~p~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  160 (194)
T d1dusa_         116 ----KDRKYNKIITNPPIRA---GKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             ----TTSCEEEEEECCCSTT---CHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             ----ccCCceEEEEcccEEe---cchhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence                5689999999887664   45567889999999999999998775544

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.67  E-value=2e-16  Score=129.06  Aligned_cols=106  Identities=15%  Similarity=0.065  Sum_probs=82.9

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      +.|+.+|||||||+|..+..+++. +.+.|+|+|+|+.|++.++++.....   ++..+..|.......     .+..+|
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~-----~~~~~~  143 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE---NIIPILGDANKPQEY-----ANIVEK  143 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT---TEEEEECCTTCGGGG-----TTTCCC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc---ccceEEEeeccCccc-----ccccce
Confidence            448999999999999999999887 44699999999999999998876543   567788887654321     345566


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ++++...+++    .++...++.++.+.|||||.+++..
T Consensus       144 v~~i~~~~~~----~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         144 VDVIYEDVAQ----PNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             EEEEEECCCS----TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEeeccccc----hHHHHHHHHHHHHhcccCceEEEEe
Confidence            6655554443    4567889999999999999998863

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.7e-16  Score=127.49  Aligned_cols=117  Identities=17%  Similarity=0.022  Sum_probs=88.7

Q ss_pred             HHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      .+......+|.+|||||||+|..+..+++.+..+++|+|+|+.+++.|+++......  ++.++..|+....  ..+  +
T Consensus        45 ~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~--~~~--~  118 (229)
T d1zx0a1          45 ALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVA--PTL--P  118 (229)
T ss_dssp             HHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHG--GGS--C
T ss_pred             HHHHhhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc--ccccccccccccc--ccc--c
Confidence            455566678999999999999999998887666899999999999999999876543  6677777653211  111  5


Q ss_pred             CCceeEEEecc-ccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +++||.|+.-. ...+...+..+...+++++.++|||||+|++.
T Consensus       119 ~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         119 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            68999987421 12223345677889999999999999999874

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.63  E-value=5.8e-15  Score=122.28  Aligned_cols=106  Identities=19%  Similarity=0.127  Sum_probs=89.8

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .+..+|||||||+|..+..+++.. ..+++++|+ +.+++.|+++....+...++.++.+|... +.       +..||+
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~-------p~~~D~  150 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL-------PVTADV  150 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-------SCCEEE
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-cc-------cccchh
Confidence            356789999999999999998874 348999997 78999999998877766689999999754 22       356999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |++..++|+  .+.++...+|++++++|+|||.+++..
T Consensus       151 v~~~~vLh~--~~d~~~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         151 VLLSFVLLN--WSDEDALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhccccccc--cCcHHHHHHHHHHHhhcCCcceeEEEE
Confidence            999999997  467788899999999999999998874

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.60  E-value=1.8e-15  Score=121.62  Aligned_cols=107  Identities=11%  Similarity=0.003  Sum_probs=83.0

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      .++|+.+|||+|||+|..+..+++. +.++|+|+|+|+.|++.|+++.+..+   ++.++..|+........   ....+
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~~---~~~~v  126 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYSG---IVEKV  126 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTTT---TCCCE
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCcccccc---ccceE
Confidence            4569999999999999999998876 44689999999999999999987754   78999999876544211   23345


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+|.+.  ++    ...+...++.++.++|||||.+++..
T Consensus       127 d~v~~~--~~----~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         127 DLIYQD--IA----QKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEEC--CC----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEec--cc----ChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            555432  22    24457789999999999999998874

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=8.6e-15  Score=125.47  Aligned_cols=106  Identities=16%  Similarity=0.109  Sum_probs=89.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||||||+|.++..+++.+..+|+|+|.|+ +++.|++....++...++.++++|+.+.++      ++++||+|
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~------~~~~~D~i  109 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL------PFPKVDII  109 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC------SSSCEEEE
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC------cccceeEE
Confidence            47899999999999999888888888999999986 678888888877776689999999988776      67899999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      ++....+. +........++..+.++|||||+++
T Consensus       110 ~se~~~~~-~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         110 ISEWMGYF-LLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EECCCBTT-BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEeccee-eccchhHHHHHHHHHhccCCCeEEE
Confidence            98765554 4446668889999999999999985

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.56  E-value=1.2e-14  Score=119.46  Aligned_cols=111  Identities=14%  Similarity=0.036  Sum_probs=90.6

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ++||.+|||+|||+|.++..+++.  +.++|+++|+++++++.|+++++......++.+.++|+.+. +      +++.|
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~------~~~~f  155 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-I------SDQMY  155 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-C------CSCCE
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-c------cccee
Confidence            569999999999999999888875  45699999999999999999998765445899999998653 2      46789


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHH
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~  155 (258)
                      |.|++...         +...++.++.++|||||++++..|+-..+.+.
T Consensus       156 D~V~ld~p---------~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~  195 (250)
T d1yb2a1         156 DAVIADIP---------DPWNHVQKIASMMKPGSVATFYLPNFDQSEKT  195 (250)
T ss_dssp             EEEEECCS---------CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHH
T ss_pred             eeeeecCC---------chHHHHHHHHHhcCCCceEEEEeCCcChHHHH
Confidence            99976431         13467999999999999999999986555443

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=1.5e-14  Score=119.74  Aligned_cols=117  Identities=15%  Similarity=0.060  Sum_probs=93.9

Q ss_pred             HHhcCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhc--CCCceeEEEEcCCCCCchhhhhhh
Q 025059           26 KIYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ--RKNFIAEFFEADPCAENFETQMQE  101 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~  101 (258)
                      ...+.||.+|||+|||+|.++..+++.  +.++++++|+++++++.|+++++..  ....++.+.++|+.+.++      
T Consensus        91 ~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~------  164 (264)
T d1i9ga_          91 EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL------  164 (264)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC------
T ss_pred             HhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc------
Confidence            344679999999999999999999876  4569999999999999999988753  223378999999876666      


Q ss_pred             cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHH
Q 025059          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~  157 (258)
                      +++.||.|++..         ++...++.++.++|||||.+++..|+-..+.+...
T Consensus       165 ~~~~fDaV~ldl---------p~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~  211 (264)
T d1i9ga_         165 PDGSVDRAVLDM---------LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVE  211 (264)
T ss_dssp             CTTCEEEEEEES---------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHH
T ss_pred             cCCCcceEEEec---------CCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHH
Confidence            678999997521         22457899999999999999999999876554443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.55  E-value=2.2e-14  Score=114.59  Aligned_cols=116  Identities=15%  Similarity=0.152  Sum_probs=90.0

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++-.|||||||+|..+..++.. +...++|+|+++.++..|.++....+.. ++.++++|+..  +...+  +++++|.
T Consensus        28 ~~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~--l~~~~--~~~~~d~  102 (204)
T d2fcaa1          28 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADT--LTDVF--EPGEVKR  102 (204)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGG--HHHHC--CTTSCCE
T ss_pred             CCCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-Cchhcccchhh--hhccc--Cchhhhc
Confidence            34557999999999999999887 4468999999999999999999887664 79999999854  32223  5789999


Q ss_pred             EEeccccccccCCHHH------HHHHHHHHHhcccCCcEEEEEEcCchHHH
Q 025059          109 VCCFQHLQMCFETEER------ARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~------~~~~l~~i~~~LkpgG~~i~~~~~~~~~~  153 (258)
                      |.+.+...+  ....+      ...++..++++|||||.|.+.+ |.....
T Consensus       103 v~i~fp~P~--~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T-D~~~y~  150 (204)
T d2fcaa1         103 VYLNFSDPW--PKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT-DNRGLF  150 (204)
T ss_dssp             EEEESCCCC--CSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE-SCHHHH
T ss_pred             ccccccccc--chhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE-CChHHH
Confidence            998887654  11111      1479999999999999998875 443333

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=1e-14  Score=117.47  Aligned_cols=102  Identities=12%  Similarity=0.011  Sum_probs=81.9

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      -++|+.+|||||||+|..+..+++.  ..+.|+++|+++.+++.|+++++..... ++.++++|..+...      ..++
T Consensus        72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~d~~~~~~------~~~~  144 (213)
T d1dl5a1          72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVP------EFSP  144 (213)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG------GGCC
T ss_pred             hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-ccccccCchHHccc------cccc
Confidence            3679999999999999998888765  3458999999999999999999876543 67888898755443      4678


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      ||+|++..+++.+          ..++.+.|||||.+++..
T Consensus       145 fD~I~~~~~~~~~----------p~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         145 YDVIFVTVGVDEV----------PETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             EEEEEECSBBSCC----------CHHHHHHEEEEEEEEEEB
T ss_pred             hhhhhhhccHHHh----------HHHHHHhcCCCcEEEEEE
Confidence            9999999988762          124667899999998753

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=1.2e-14  Score=123.84  Aligned_cols=106  Identities=14%  Similarity=0.126  Sum_probs=87.2

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||||||+|.++..+++.+..+|+|+|.|+.+ ..+++....++...++.++++|+.+.++      +.++||+|
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~------~~~~~D~i  104 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVEL------PVEKVDII  104 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCC------SSSCEEEE
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHccc------ccceeEEE
Confidence            3789999999999999888888887799999999765 5666666666666689999999988766      67899999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      ++....++ +.....+..++..+.++|+|||.++
T Consensus       105 vs~~~~~~-l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         105 ISEWMGYC-LFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             EECCCBBT-BTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeeee-eccHHHHHHHHHHHHhcCCCCeEEE
Confidence            98765554 4446668899999999999999986

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.6e-14  Score=119.44  Aligned_cols=106  Identities=15%  Similarity=0.092  Sum_probs=86.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .++.+|||||||+|.++..+++.+..+|+|+|.|+.++. +++....++...++.++++|+.+..+      +..+||+|
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~------~~~~~D~I  106 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHL------PVEKVDVI  106 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCC------SCSCEEEE
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcC------ccccceEE
Confidence            478999999999999999888888889999999998865 45555555555589999999988766      67899999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      ++....+. .........++....+.|+|||.++
T Consensus       107 vse~~~~~-~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         107 ISEWMGYF-LLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             EECCCBTT-BTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEeeeeee-cccccccHHHHHHHHhcCCCCcEEe
Confidence            98765554 3445667888888999999999986

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=6.9e-14  Score=119.53  Aligned_cols=135  Identities=15%  Similarity=0.079  Sum_probs=101.4

Q ss_pred             HHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      .++..+++++.+|||+|||+|..+..++..+..+|+++|+|+.+++.|++++..++...++.++++|+.+  ....+...
T Consensus       137 ~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~--~~~~~~~~  214 (324)
T d2as0a2         137 LALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE--EMEKLQKK  214 (324)
T ss_dssp             HHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH--HHHHHHHT
T ss_pred             HHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhh--hhHHHHhc
Confidence            3445677889999999999999999998888779999999999999999999988876688999999743  21223335


Q ss_pred             CCceeEEEecccccc-----ccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHh
Q 025059          103 ANQADLVCCFQHLQM-----CFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN  159 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~-----~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~  159 (258)
                      ..+||+|++......     ..........++..+.++|+|||+++..+++...-.+.+.+.
T Consensus       215 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~  276 (324)
T d2as0a2         215 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDM  276 (324)
T ss_dssp             TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHH
T ss_pred             cCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHH
Confidence            679999998542211     011123467788999999999999999877764333444443

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.49  E-value=1.7e-13  Score=109.35  Aligned_cols=112  Identities=16%  Similarity=0.101  Sum_probs=87.2

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ...-.|||||||+|..+..++.. +...++|+|+++.++..|.++....+.. ++.+.++|+...  ...+  ++.++|.
T Consensus        30 ~~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l--~~~~--~~~~~~~  104 (204)
T d1yzha1          30 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDL--TDYF--EDGEIDR  104 (204)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCG--GGTS--CTTCCSE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHH--hhhc--cCCceeh
Confidence            34457999999999999999887 4568999999999999999998877654 799999998663  2223  5789999


Q ss_pred             EEeccccccccCCHHH------HHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQHLQMCFETEER------ARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~------~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |.+.+.-.+  ....+      ...+++.++++|+|||.+.+.+=+
T Consensus       105 i~i~fPdPw--~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~  148 (204)
T d1yzha1         105 LYLNFSDPW--PKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN  148 (204)
T ss_dssp             EEEESCCCC--CSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred             hcccccccc--cchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence            988875443  11111      268999999999999999886533

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.47  E-value=1.6e-13  Score=111.21  Aligned_cols=106  Identities=18%  Similarity=0.144  Sum_probs=83.3

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      +.||.+|||+|||+|..+..+++.  +.++|+|+|+|+.|++.++++.+...   .+..+..|.......   ......+
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~~---~~~~~~v  144 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEEY---RALVPKV  144 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGGG---TTTCCCE
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCcccc---cccccce
Confidence            459999999999999999999886  45699999999999999999876553   567788887653321   1135678


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+|.+...      ..++...++.++.+.|||||.+++.+
T Consensus       145 D~i~~d~~------~~~~~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         145 DVIFEDVA------QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEECCC------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEEcc------ccchHHHHHHHHHHhcccCCeEEEEE
Confidence            98876432      23457789999999999999998873

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7e-14  Score=119.68  Aligned_cols=109  Identities=15%  Similarity=0.068  Sum_probs=83.7

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc-------C-CCceeEEEEcCCCCCchhhh
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-------R-KNFIAEFFEADPCAENFETQ   98 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~-------~-~~~~~~~~~~d~~~~~~~~~   98 (258)
                      .+.++.+|||||||+|..+..++.. +..+++|+|+|+.+++.|++..+..       + ...++.|+++|+.+.++...
T Consensus       148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~  227 (328)
T d1nw3a_         148 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER  227 (328)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccc
Confidence            3568999999999999999888765 5568999999999999998765532       1 12268999999987665332


Q ss_pred             hhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .    ..+|+|++....+     .+++...+.++.+.|||||.++.+
T Consensus       228 ~----~~advi~~~~~~f-----~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         228 I----ANTSVIFVNNFAF-----GPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             H----HHCSEEEECCTTT-----CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             c----CcceEEEEcceec-----chHHHHHHHHHHHhCCCCcEEEEe
Confidence            2    2357887654322     356788999999999999999875

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.3e-13  Score=111.64  Aligned_cols=104  Identities=15%  Similarity=0.129  Sum_probs=81.4

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCC----CceeEEEEcCCCCCchhhhhhh
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFETQMQE  101 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~  101 (258)
                      .++|+.+|||+|||+|..+..+++.  ..++|+++|+++++++.|++++.....    ..++.+.++|+.....      
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~------  146 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA------  146 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG------
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc------
Confidence            3568999999999999888777664  356999999999999999998865432    1267889999765444      


Q ss_pred             cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEc
Q 025059          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      ....||+|++..+++..          ...+.+.|||||.+++...
T Consensus       147 ~~~~fD~I~~~~~~~~i----------p~~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         147 EEAPYDAIHVGAAAPVV----------PQALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             GGCCEEEEEECSBBSSC----------CHHHHHTEEEEEEEEEEES
T ss_pred             hhhhhhhhhhhcchhhc----------CHHHHhhcCCCcEEEEEEc
Confidence            46789999999887752          2346789999999998643

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=3.1e-13  Score=112.11  Aligned_cols=110  Identities=13%  Similarity=0.045  Sum_probs=88.6

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      -+.|+.+|||+|||+|.++..+++.  +.++++++|+++++++.|+++++..+...++.+...|+... +      ....
T Consensus       100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~-~------~~~~  172 (266)
T d1o54a_         100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-F------DEKD  172 (266)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-C------SCCS
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc-c------cccc
Confidence            3569999999999999999999876  34699999999999999999998876655788888886332 2      4577


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHH
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~  153 (258)
                      ||.|+...         ++...++.++.++|||||.+++..|.-+.+.
T Consensus       173 ~D~V~~d~---------p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~  211 (266)
T d1o54a_         173 VDALFLDV---------PDPWNYIDKCWEALKGGGRFATVCPTTNQVQ  211 (266)
T ss_dssp             EEEEEECC---------SCGGGTHHHHHHHEEEEEEEEEEESSHHHHH
T ss_pred             eeeeEecC---------CCHHHHHHHHHhhcCCCCEEEEEeCcccHHH
Confidence            99886422         2345789999999999999999999865544

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=5.5e-13  Score=110.78  Aligned_cols=130  Identities=13%  Similarity=0.141  Sum_probs=95.8

Q ss_pred             ccCCCCCcchHHhHHHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCc
Q 025059            3 VLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNF   81 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~   81 (258)
                      ||. ||.+|-..-  .    ..+......+.+|||+|||+|..+..++.. +..+++++|+|+.+++.|+++....+.. 
T Consensus        87 VlI-PRpeTE~lv--~----~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~-  158 (274)
T d2b3ta1          87 TLI-PRPDTECLV--E----QALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-  158 (274)
T ss_dssp             SCC-CCTTHHHHH--H----HHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-
T ss_pred             ccc-cccchhhhh--h----hHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc-
Confidence            444 777776432  2    223344456789999999999999888776 4569999999999999999999877653 


Q ss_pred             eeEEEEcCCCCCchhhhhhhcCCceeEEEeccccc-------------c----ccC----CHHHHHHHHHHHHhcccCCc
Q 025059           82 IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQ-------------M----CFE----TEERARRLLQNVSSLLKPGG  140 (258)
Q Consensus        82 ~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~-------------~----~~~----~~~~~~~~l~~i~~~LkpgG  140 (258)
                      ++.++++|+.+. +      ++++||+|+|+-..-             +    ++.    +....+.++.++.++|+|||
T Consensus       159 ~v~~~~~d~~~~-~------~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G  231 (274)
T d2b3ta1         159 NIHILQSDWFSA-L------AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGG  231 (274)
T ss_dssp             SEEEECCSTTGG-G------TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEE
T ss_pred             cceeeecccccc-c------CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCC
Confidence            699999998542 2      467999999973210             0    011    11346789999999999999


Q ss_pred             EEEEEEc
Q 025059          141 YFLGITP  147 (258)
Q Consensus       141 ~~i~~~~  147 (258)
                      .+++...
T Consensus       232 ~l~lEig  238 (274)
T d2b3ta1         232 FLLLEHG  238 (274)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEC
Confidence            9999743

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.4e-12  Score=110.96  Aligned_cols=117  Identities=16%  Similarity=0.058  Sum_probs=87.5

Q ss_pred             HHhcCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhc----------CCCceeEEEEcCCCCC
Q 025059           26 KIYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ----------RKNFIAEFFEADPCAE   93 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~----------~~~~~~~~~~~d~~~~   93 (258)
                      ..-++||.+|||+|||+|.++..+++.  +.++|+++|+++++++.|+++++..          ....++.+.+.|+.+.
T Consensus        93 ~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~  172 (324)
T d2b25a1          93 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA  172 (324)
T ss_dssp             HHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred             HhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc
Confidence            345679999999999999999999876  4569999999999999999988642          1233789999998654


Q ss_pred             chhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHH
Q 025059           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (258)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~  155 (258)
                      ..  .+  +...||.|+.-.         ++...++.++.++|||||.+++..|+-..+.+.
T Consensus       173 ~~--~~--~~~~fD~V~LD~---------p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~  221 (324)
T d2b25a1         173 TE--DI--KSLTFDAVALDM---------LNPHVTLPVFYPHLKHGGVCAVYVVNITQVIEL  221 (324)
T ss_dssp             C-----------EEEEEECS---------SSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHH
T ss_pred             cc--cc--CCCCcceEeecC---------cCHHHHHHHHHHhccCCCEEEEEeCCHHHHHHH
Confidence            32  11  457899996521         113358999999999999999999988665543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.40  E-value=2.5e-12  Score=97.80  Aligned_cols=108  Identities=12%  Similarity=0.044  Sum_probs=84.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|.++..++.++..+++++|.++.+++.+++.++..+...+++++++|+..  +   +....++||+|+
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~--~---l~~~~~~fDiIf   88 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER--A---IDCLTGRFDLVF   88 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH--H---HHHBCSCEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccc--c---ccccccccceeE
Confidence            58999999999999998888888889999999999999999999887766679999999743  1   222578999998


Q ss_pred             eccccccccCCHHHHHHHHHHHH--hcccCCcEEEEEEcC
Q 025059          111 CFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPD  148 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~--~~LkpgG~~i~~~~~  148 (258)
                      +.-  .|   ........+..+.  +.|+|||++++..+.
T Consensus        89 ~DP--Py---~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          89 LDP--PY---AKETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             ECC--SS---HHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             ech--hh---ccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            743  22   1334455566554  579999999987544

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.40  E-value=5.5e-13  Score=107.73  Aligned_cols=99  Identities=13%  Similarity=0.064  Sum_probs=78.7

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      -++++.+|||||||+|..+..++... ++|+++|+++.+++.|+++.....   ++.++++|......      ..++||
T Consensus        67 ~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~~---nv~~~~~d~~~g~~------~~~pfD  136 (224)
T d1vbfa_          67 DLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYE------EEKPYD  136 (224)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCG------GGCCEE
T ss_pred             hhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhccc---ccccccCchhhcch------hhhhHH
Confidence            45699999999999999888777665 599999999999999998876543   88999999754332      357899


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      +|++..+....          ...+.+.|+|||.+++-.
T Consensus       137 ~Iiv~~a~~~i----------p~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         137 RVVVWATAPTL----------LCKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             EEEESSBBSSC----------CHHHHHTEEEEEEEEEEE
T ss_pred             HHHhhcchhhh----------hHHHHHhcCCCCEEEEEE
Confidence            99998876642          234567899999998853

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=1.9e-12  Score=112.98  Aligned_cols=120  Identities=16%  Similarity=0.108  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcC-------C-CceeEE-EE
Q 025059           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR-------K-NFIAEF-FE   87 (258)
Q Consensus        18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~-------~-~~~~~~-~~   87 (258)
                      .++..++-...+.|+.+|||||||+|..+..++.. +..+++|+|+|+.|++.|+++.+..+       . .....+ ..
T Consensus       203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            34555554445779999999999999999988776 55689999999999999998876421       0 112233 34


Q ss_pred             cCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           88 ADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ++....+....   .-..+|+|.+...+     ..+++...+.++.+.|||||.++.+
T Consensus       283 ~~f~~~~~~d~---~~~~adVV~inn~~-----f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         283 KSFVDNNRVAE---LIPQCDVILVNNFL-----FDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             SCSTTCHHHHH---HGGGCSEEEECCTT-----CCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             echhhcccccc---ccccceEEEEeccc-----CchHHHHHHHHHHHhcCCCcEEEEe
Confidence            44433222111   12467888775422     2467889999999999999999865

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.39  E-value=2e-12  Score=109.81  Aligned_cols=131  Identities=11%  Similarity=0.093  Sum_probs=97.1

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      ...++.+|||++||+|+++..++..+...|+++|+|+.+++.|+++++.++.. .+++++++|+.+  ..+.+.....+|
T Consensus       141 ~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~--~l~~~~~~~~~f  218 (317)
T d2b78a2         141 GSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD--YFKYARRHHLTY  218 (317)
T ss_dssp             TTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH--HHHHHHHTTCCE
T ss_pred             HhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHH--HHHHHHhhcCCC
Confidence            34568999999999999998887778779999999999999999999877653 368999999843  222233346799


Q ss_pred             eEEEeccc---c--ccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHHhH
Q 025059          107 DLVCCFQH---L--QMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNV  160 (258)
Q Consensus       107 D~V~~~~~---l--~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~~~  160 (258)
                      |+|++--.   -  ...+....+...++..+.++|+|||++++++.+...-.+.+.+.+
T Consensus       219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v  277 (317)
T d2b78a2         219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQI  277 (317)
T ss_dssp             EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHH
Confidence            99987421   1  112233456788999999999999999998776543334444433

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.38  E-value=4.3e-13  Score=114.18  Aligned_cols=116  Identities=13%  Similarity=0.098  Sum_probs=88.8

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      ++.+|||+|||+|+++..++.. ..+|+++|+|+.+++.|+++++.++.. ++.++++|+.+  +...+....++||+|+
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~--~~~~~~~~~~~fD~Vi  220 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFD--LLRRLEKEGERFDLVV  220 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHH--HHHHHHHTTCCEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHH--HhhhhHhhhcCCCEEE
Confidence            5889999999999999887654 459999999999999999999888764 68999999744  2222333567999999


Q ss_pred             eccccc-----cccCCHHHHHHHHHHHHhcccCCcEEEEEEcCch
Q 025059          111 CFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (258)
Q Consensus       111 ~~~~l~-----~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~  150 (258)
                      +.-...     ...........++..+.++|+|||.++.++.+..
T Consensus       221 ~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~  265 (318)
T d1wxxa2         221 LDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH  265 (318)
T ss_dssp             ECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             EcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            853211     1111234567889999999999999999877653

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.35  E-value=2.8e-12  Score=99.44  Aligned_cols=119  Identities=10%  Similarity=0.146  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059           16 LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (258)
Q Consensus        16 ~~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (258)
                      +.||+.     ....++.+|||+|||+|.++..++..+. +++++|.++.+++.++++++..+...++....+|.    +
T Consensus        31 lf~~l~-----~~~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~----~  100 (171)
T d1ws6a1          31 LFDYLR-----LRYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEV----F  100 (171)
T ss_dssp             HHHHHH-----HHCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHH----H
T ss_pred             HHHHhh-----ccccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhc----c
Confidence            456643     3457789999999999999988878776 89999999999999999998776543433333332    2


Q ss_pred             hhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      .........+||+|++.-..+  ....+....++.  ..+|+|||++++..+.
T Consensus       101 ~~~~~~~~~~fD~If~DPPY~--~~~~~~l~~l~~--~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         101 LPEAKAQGERFTVAFMAPPYA--MDLAALFGELLA--SGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             HHHHHHTTCCEEEEEECCCTT--SCTTHHHHHHHH--HTCEEEEEEEEEEEET
T ss_pred             cccccccCCccceeEEccccc--cCHHHHHHHHHH--cCCcCCCeEEEEEecC
Confidence            111222567899998853222  222333444443  3689999999887543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.34  E-value=1.2e-12  Score=108.14  Aligned_cols=106  Identities=14%  Similarity=0.029  Sum_probs=86.6

Q ss_pred             HHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      +.....++.+|||+|||+|.++..++..+..+++++|+++.+++.++++.+.++...+++++++|+.+..       +.+
T Consensus       101 i~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-------~~~  173 (260)
T d2frna1         101 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-------GEN  173 (260)
T ss_dssp             HHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-------CCS
T ss_pred             HHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-------cCC
Confidence            3445678999999999999999999888777999999999999999999998877768999999987643       467


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .||.|++... +.       ...++..+.++|++||++.+.
T Consensus       174 ~~D~Ii~~~p-~~-------~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         174 IADRILMGYV-VR-------THEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             CEEEEEECCC-SS-------GGGGHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEECCC-Cc-------hHHHHHHHHhhcCCCCEEEEE
Confidence            8999987542 21       234667778899999998654

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.32  E-value=1.1e-11  Score=104.21  Aligned_cols=128  Identities=16%  Similarity=0.148  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCc-eeEEEEcCCCCCch
Q 025059           17 YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENF   95 (258)
Q Consensus        17 ~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~   95 (258)
                      +.|++..+ . -..++.+|||++||+|.++..++..+. +|++||.|+.+++.|+++.+.++... +++|+++|+.+  +
T Consensus       120 r~~~~~~~-~-~~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~--~  194 (309)
T d2igta1         120 WEWLKNAV-E-TADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMK--F  194 (309)
T ss_dssp             HHHHHHHH-H-HSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHH--H
T ss_pred             HHHHHHHH-h-hccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHH--h
Confidence            35666544 2 234578999999999999999887776 89999999999999999988765432 68999999843  2


Q ss_pred             hhhhhhcCCceeEEEec---ccccc---ccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059           96 ETQMQEKANQADLVCCF---QHLQM---CFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus        96 ~~~~~~~~~~fD~V~~~---~~l~~---~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .........+||+|++-   ++...   .+.-......++..+..+|+|||.+++.+.++
T Consensus       195 l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s  254 (309)
T d2igta1         195 IQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  254 (309)
T ss_dssp             HHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             HHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence            22222246899999984   22110   11223456778888999999999766664433

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.27  E-value=8e-12  Score=100.15  Aligned_cols=102  Identities=12%  Similarity=0.065  Sum_probs=81.3

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      -++++.+|||||||+|..+.-++....++|+++|.++.+++.|++++...+.. ++.++++|......      ..++||
T Consensus        75 ~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~-nv~~~~gd~~~g~~------~~~pfD  147 (215)
T d1jg1a_          75 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFP------PKAPYD  147 (215)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG------GGCCEE
T ss_pred             ccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCc-eeEEEECccccCCc------ccCcce
Confidence            46689999999999999888777653357999999999999999999876543 89999999865433      468999


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      .|++..+....  +        ..+.+.|+|||.+++..
T Consensus       148 ~Iiv~~a~~~i--p--------~~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         148 VIIVTAGAPKI--P--------EPLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             EEEECSBBSSC--C--------HHHHHTEEEEEEEEEEE
T ss_pred             eEEeecccccC--C--------HHHHHhcCCCCEEEEEE
Confidence            99998877641  1        22566899999998763

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=1.4e-10  Score=91.16  Aligned_cols=117  Identities=18%  Similarity=0.180  Sum_probs=88.5

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCce
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~f  106 (258)
                      ..++..+||++||+|+.+..++.. +..+++|+|.++.|++.|++++....  .++.+++++..+...  .+.. ..+++
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~--~~~~~~~~~v   96 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADF--LLKTLGIEKV   96 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHH--HHHHTTCSCE
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHH--HHHHcCCCCc
Confidence            347899999999999999999886 45699999999999999999987653  278999998754321  1111 35799


Q ss_pred             eEEEecccccc-----ccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          107 DLVCCFQHLQM-----CFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       107 D~V~~~~~l~~-----~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      |.|+.-.++-.     .-.........+..+.++|+|||.+++.+...
T Consensus        97 dgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          97 DGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             EEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             ceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            99976544311     01224567889999999999999998876655

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.20  E-value=2.4e-11  Score=97.92  Aligned_cols=102  Identities=11%  Similarity=0.055  Sum_probs=77.2

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc----C---CCeEEEEecChhHHHHHHHHHHhcCC----CceeEEEEcCCCCCchhh
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA----L---IANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFET   97 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~----~---~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~   97 (258)
                      ++|+.+|||||||+|..+..++..    +   ..+|+++|+++++++.|+++......    ..++.+.++|......  
T Consensus        78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~--  155 (223)
T d1r18a_          78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP--  155 (223)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG--
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc--
Confidence            568999999999999887766553    1   24899999999999999887643210    1168999999865443  


Q ss_pred             hhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                          +.++||.|++..++...  +        ..+.+.|+|||++++..
T Consensus       156 ----~~~~fD~Iiv~~a~~~~--p--------~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         156 ----PNAPYNAIHVGAAAPDT--P--------TELINQLASGGRLIVPV  190 (223)
T ss_dssp             ----GGCSEEEEEECSCBSSC--C--------HHHHHTEEEEEEEEEEE
T ss_pred             ----cccceeeEEEEeechhc--h--------HHHHHhcCCCcEEEEEE
Confidence                46789999999877641  1        24678999999998863

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.19  E-value=5.3e-11  Score=93.00  Aligned_cols=124  Identities=16%  Similarity=0.086  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHhcC--CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059           18 EFAKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (258)
Q Consensus        18 ~~~k~~li~~~~~--~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (258)
                      ..++..+.....+  .+.+|||++||+|.++...+..+...++++|.++.+++.++++++..+...++.++++|+..  +
T Consensus        26 ~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~--~  103 (182)
T d2fhpa1          26 DKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR--A  103 (182)
T ss_dssp             HHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH--H
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchh--h
Confidence            4455555444332  68999999999999999998998889999999999999999998876655578999999743  2


Q ss_pred             hhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHH--hcccCCcEEEEEEcC
Q 025059           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPD  148 (258)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~--~~LkpgG~~i~~~~~  148 (258)
                      ...+.....+||+|.+--.  |.   .......+..+.  ..|+++|++++....
T Consensus       104 l~~~~~~~~~fDlIflDPP--Y~---~~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         104 LEQFYEEKLQFDLVLLDPP--YA---KQEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             HHHHHHTTCCEEEEEECCC--GG---GCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hhhhcccCCCcceEEechh--hh---hhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            2222224568999977532  21   112344555554  479999999886543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.18  E-value=1.6e-10  Score=91.02  Aligned_cols=119  Identities=15%  Similarity=0.153  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHH----HHc----C-CCeEEEEecChhHHHHHHHHHHh------------
Q 025059           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKW----ETA----L-IANYIGIDVATSGIGEARDTWEN------------   76 (258)
Q Consensus        18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~----~~~----~-~~~v~gvD~s~~~l~~a~~~~~~------------   76 (258)
                      ++++..++.  ..+..+||++|||+|.-.-.+    ...    + .-+++|+|+|+.+++.|++..-.            
T Consensus        13 ~~L~~~~~~--~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~   90 (193)
T d1af7a2          13 PILAEHARR--RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQL   90 (193)
T ss_dssp             HHHHHHHHH--SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHH
T ss_pred             HHHHHHHhc--cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHH
Confidence            344444433  235579999999999854333    221    1 12799999999999999852100            


Q ss_pred             ------cCC------------CceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccC
Q 025059           77 ------QRK------------NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP  138 (258)
Q Consensus        77 ------~~~------------~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp  138 (258)
                            ...            ...+.+...+......     .+.+.||+|+|..++.|  -+.+...+++++++++|+|
T Consensus        91 ~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~fDvI~CRNVLiY--f~~~~~~~vl~~l~~~L~p  163 (193)
T d1af7a2          91 QRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQY-----NVPGPFDAIFCRNVMIY--FDKTTQEDILRRFVPLLKP  163 (193)
T ss_dssp             HHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSC-----CCCCCEEEEEECSSGGG--SCHHHHHHHHHHHGGGEEE
T ss_pred             hhceeecCCCccceeehHHHHHHHHHHhhhhcccccc-----CCCCCccEEEeehhHHh--cCHHHHHHHHHHHHHHhCC
Confidence                  000            0012344444432211     13578999999999998  4578889999999999999


Q ss_pred             CcEEEEE
Q 025059          139 GGYFLGI  145 (258)
Q Consensus       139 gG~~i~~  145 (258)
                      ||+|++-
T Consensus       164 GG~L~lG  170 (193)
T d1af7a2         164 DGLLFAG  170 (193)
T ss_dssp             EEEEEEC
T ss_pred             CcEEEEe
Confidence            9998764

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.17  E-value=5.3e-11  Score=93.86  Aligned_cols=69  Identities=16%  Similarity=0.036  Sum_probs=58.5

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      .|.+|||+|||+|.++..++..+..+|+|+|+++.+++.|+++.+      ++.++++|+.+         .+++||+|+
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~---------l~~~fD~Vi  112 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSE---------ISGKYDTWI  112 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGG---------CCCCEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhh---------cCCcceEEE
Confidence            589999999999998888877787799999999999999988764      56899999743         257899999


Q ss_pred             eccc
Q 025059          111 CFQH  114 (258)
Q Consensus       111 ~~~~  114 (258)
                      ++-.
T Consensus       113 ~NPP  116 (197)
T d1ne2a_         113 MNPP  116 (197)
T ss_dssp             ECCC
T ss_pred             eCcc
Confidence            8743

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.16  E-value=1e-10  Score=92.79  Aligned_cols=74  Identities=16%  Similarity=0.082  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      .|.+|||+|||+|.++..++..+..+++|+|+++.+++.|++++...+.  +..++++|+..         .+++||+|+
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~---------~~~~fD~Vi  114 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSE---------FNSRVDIVI  114 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGG---------CCCCCSEEE
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhh---------hCCcCcEEE
Confidence            6889999999999998888777777999999999999999999876643  77889998733         257899999


Q ss_pred             ecccc
Q 025059          111 CFQHL  115 (258)
Q Consensus       111 ~~~~l  115 (258)
                      +.-..
T Consensus       115 ~nPP~  119 (201)
T d1wy7a1         115 MNPPF  119 (201)
T ss_dssp             ECCCC
T ss_pred             EcCcc
Confidence            87643

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.15  E-value=3.7e-10  Score=93.26  Aligned_cols=131  Identities=19%  Similarity=0.092  Sum_probs=89.1

Q ss_pred             ccCCCCCcchHHhHHHHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCce
Q 025059            3 VLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI   82 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~   82 (258)
                      ||. ||.+|-..  -.|+...+-.   .+..+|||+|||+|..+..++..+..+++++|+|+.+++.|+++.+.++...+
T Consensus        88 vlI-PRpeTE~l--v~~~~~~~~~---~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~  161 (271)
T d1nv8a_          88 VFV-PRPETEEL--VELALELIRK---YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDR  161 (271)
T ss_dssp             SCC-CCTTHHHH--HHHHHHHHHH---HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTS
T ss_pred             ccC-chhhhhhh--hhhhhhhhcc---ccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCce
Confidence            454 77777542  2333322211   23468999999999988888777777999999999999999999988776657


Q ss_pred             eEEEEcCCCCCchhhhhhhcCCceeEEEecccc-------cc--ccCCH----------HHHHHHHHHHHhcccCCcEEE
Q 025059           83 AEFFEADPCAENFETQMQEKANQADLVCCFQHL-------QM--CFETE----------ERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus        83 ~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l-------~~--~~~~~----------~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      +.+...|..+..     ....++||+|+++-.-       ..  .+++.          ...+.+   +.+.|+|||.++
T Consensus       162 ~~i~~~~~~~~~-----~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~  233 (271)
T d1nv8a_         162 FFVRKGEFLEPF-----KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVL  233 (271)
T ss_dssp             EEEEESSTTGGG-----GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEE
T ss_pred             eEEeeccccccc-----ccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEE
Confidence            788888875422     1135799999997310       00  01111          223343   467899999998


Q ss_pred             EEEc
Q 025059          144 GITP  147 (258)
Q Consensus       144 ~~~~  147 (258)
                      +.+.
T Consensus       234 ~Eig  237 (271)
T d1nv8a_         234 MEIG  237 (271)
T ss_dssp             EECC
T ss_pred             EEEC
Confidence            8754

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.2e-09  Score=85.25  Aligned_cols=107  Identities=8%  Similarity=0.027  Sum_probs=80.0

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      .+.+|||++||+|.++..++.++..+++++|.++.+++.++++++..... +..++..|+..     .+.....+||+|+
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~d~~~-----~l~~~~~~fDlIf  116 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMS-----FLAQKGTPHNIVF  116 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHH-----HHSSCCCCEEEEE
T ss_pred             chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcccc-ceeeeeecccc-----cccccccccCEEE
Confidence            57899999999999999988888889999999999999999988765443 67888888632     2222567999998


Q ss_pred             eccccccccCCHHHHHHHHHHHH--hcccCCcEEEEEEcC
Q 025059          111 CFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPD  148 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~--~~LkpgG~~i~~~~~  148 (258)
                      +--...     ......++..+.  ..|+++|++++....
T Consensus       117 ~DPPY~-----~~~~~~~l~~l~~~~~L~~~~iIiiE~~~  151 (183)
T d2fpoa1         117 VDPPFR-----RGLLEETINLLEDNGWLADEALIYVESEV  151 (183)
T ss_dssp             ECCSSS-----TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             EcCccc-----cchHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            854322     112344455444  469999999987443

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=5.6e-10  Score=89.26  Aligned_cols=108  Identities=12%  Similarity=0.052  Sum_probs=80.5

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCCce
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~f  106 (258)
                      +..+|||+|||+|..+..++..  ..++++++|+++.+++.|++.++..+...+++++.+|..+.  .+.+..  ..++|
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~--l~~l~~~~~~~~~  133 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDL--IPQLKKKYDVDTL  133 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH--GGGHHHHSCCCCE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccc--ccchhhccccccc
Confidence            4479999999999999888775  34699999999999999999998877766899999997431  111111  34689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      |+|.+-..-.     .......+.+..++|+|||++++.
T Consensus       134 D~ifiD~~~~-----~~~~~~~l~~~~~lLkpGGvIv~D  167 (214)
T d2cl5a1         134 DMVFLDHWKD-----RYLPDTLLLEKCGLLRKGTVLLAD  167 (214)
T ss_dssp             EEEEECSCGG-----GHHHHHHHHHHTTCEEEEEEEEES
T ss_pred             ceeeeccccc-----ccccHHHHHHHhCccCCCcEEEEe
Confidence            9998754221     112334577788999999998764

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.6e-09  Score=88.61  Aligned_cols=140  Identities=10%  Similarity=0.042  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHhc--CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc
Q 025059           18 EFAKTALIKIYS--HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (258)
Q Consensus        18 ~~~k~~li~~~~--~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~   94 (258)
                      .|+...+.....  .+..+|||||||+|.....++.. +..+++|+|+|+.+++.|+++.+.+++..++.+.+.+....-
T Consensus        46 ~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~  125 (250)
T d2h00a1          46 HWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL  125 (250)
T ss_dssp             HHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS
T ss_pred             HHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhh
Confidence            666655422211  24579999999999988887766 445999999999999999999998877778888887654432


Q ss_pred             hhhhhhhcCCceeEEEeccccccccCC-------------------------------HHHHHHHHHHHHhcccCCcEEE
Q 025059           95 FETQMQEKANQADLVCCFQHLQMCFET-------------------------------EERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus        95 ~~~~~~~~~~~fD~V~~~~~l~~~~~~-------------------------------~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      +........++||+|+|+--.+..-+.                               ..-...++++....++..|.+.
T Consensus       126 ~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t  205 (250)
T d2h00a1         126 MDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYS  205 (250)
T ss_dssp             TTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEE
T ss_pred             hhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEE
Confidence            211111235789999997544321000                               0124566777788889999886


Q ss_pred             EEEcCc---hHHHHHHH
Q 025059          144 GITPDS---STIWAKYQ  157 (258)
Q Consensus       144 ~~~~~~---~~~~~~~~  157 (258)
                      ......   ..+.+.++
T Consensus       206 ~~ig~~~~l~~i~~~L~  222 (250)
T d2h00a1         206 CMLGKKCSLAPLKEELR  222 (250)
T ss_dssp             EEESSTTSHHHHHHHHH
T ss_pred             EEecchhhHHHHHHHHH
Confidence            554432   34444443

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.3e-10  Score=89.64  Aligned_cols=107  Identities=14%  Similarity=0.126  Sum_probs=83.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhh-hhcCCcee
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQAD  107 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~fD  107 (258)
                      ...+|||||||+|..+..++..  ..++++.+|++++..+.|++.+...+...+++++.+|+.+.. .+.. ....++||
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l-~~~~~~~~~~~fD  137 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL-DELLAAGEAGTFD  137 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHH-HHHHHTTCTTCEE
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcc-hhhhhhcccCCcc
Confidence            4579999999999988888765  246999999999999999999988877778999999964311 1111 11357899


Q ss_pred             EEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|..-..-       +.....+..+.++|+|||++++.
T Consensus       138 ~ifiD~dk-------~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         138 VAVVDADK-------ENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             EEEECSCS-------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEeCCH-------HHHHHHHHHHHHHhcCCcEEEEe
Confidence            99876532       33567788889999999999987

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.96  E-value=9e-09  Score=83.68  Aligned_cols=96  Identities=16%  Similarity=0.105  Sum_probs=75.9

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ...+|||||||+|..+..+++.. ..++++.|. +..++.+       ....++.++.+|+.+.         ...+|++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~~~~rv~~~~gD~f~~---------~p~aD~~  142 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL-------SGSNNLTYVGGDMFTS---------IPNADAV  142 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------CCBTTEEEEECCTTTC---------CCCCSEE
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC-------cccCceEEEecCcccC---------CCCCcEE
Confidence            44789999999999999998873 359999998 4444332       2233899999998652         2357999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCC---cEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPG---GYFLGI  145 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg---G~~i~~  145 (258)
                      ++...+|.  .+.++...+|+++++.|+||   |.+++.
T Consensus       143 ~l~~vLHd--w~d~~~~~iL~~~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         143 LLKYILHN--WTDKDCLRILKKCKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             EEEeeccc--CChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence            99999998  57888999999999999999   666665

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.91  E-value=1e-08  Score=83.33  Aligned_cols=97  Identities=20%  Similarity=0.178  Sum_probs=76.9

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      +...+|||||||+|..+..+++. +.-+++..|+ +..++       ......++.++.+|+.+. +      +  ..|+
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~ri~~~~gd~~~~-~------p--~~D~  142 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPPLSGIEHVGGDMFAS-V------P--QGDA  142 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCCTTEEEEECCTTTC-C------C--CEEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCCCCCeEEecCCcccc-c------c--cceE
Confidence            35689999999999999999887 3348999997 33333       222233899999998542 2      2  4599


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +++..++|.  .+.++...+|+++++.|+|||.+++.
T Consensus       143 ~~l~~vLh~--~~de~~~~iL~~~~~aL~pgg~llI~  177 (244)
T d1fp1d2         143 MILKAVCHN--WSDEKCIEFLSNCHKALSPNGKVIIV  177 (244)
T ss_dssp             EEEESSGGG--SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEehhhhh--CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            999999998  57888999999999999999999887

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.84  E-value=6.7e-09  Score=88.01  Aligned_cols=110  Identities=21%  Similarity=0.209  Sum_probs=80.6

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc------CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      ++.+|||.|||+|+++..+...      ...+++|+|+++.++..|+........  ...+.+.|.....       +..
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-------~~~  187 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-------LVD  187 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-------CCC
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhcccccccc-------ccc
Confidence            5678999999999999887543      123799999999999999888766543  5677778764433       467


Q ss_pred             ceeEEEeccccccccCCH--------------HHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          105 QADLVCCFQHLQMCFETE--------------ERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~--------------~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +||+|+++-.........              .....++..+.+.|+|||.+++.+|++
T Consensus       188 ~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         188 PVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             CEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             cccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            999999985432211100              112347899999999999999988875

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.80  E-value=2.5e-08  Score=80.03  Aligned_cols=106  Identities=10%  Similarity=0.039  Sum_probs=83.4

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh---hcCCc
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ---EKANQ  105 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~  105 (258)
                      ...+|||||+++|..+..++..  ..++++.+|.+++..+.|++.+...+...+++++.+|+.+  ..+.+.   ...++
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~--~L~~l~~~~~~~~~  136 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP--VLDEMIKDEKNHGS  136 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH--HHHHHHHCGGGTTC
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHH--HHHHHHhccccCCc
Confidence            4579999999999988888765  3469999999999999999999987777689999999733  111111   12568


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ||+|..-..-       ......++.+.++|+|||++++.
T Consensus       137 fD~iFiDa~k-------~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         137 YDFIFVDADK-------DNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             BSEEEECSCS-------TTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             eeEEEeccch-------hhhHHHHHHHHhhcCCCcEEEEc
Confidence            9999876422       33667888889999999999987

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.75  E-value=6.9e-09  Score=85.89  Aligned_cols=110  Identities=14%  Similarity=0.099  Sum_probs=80.8

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc---------CCCceeEEEEcCCCCCchhhhh
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ---------RKNFIAEFFEADPCAENFETQM   99 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~---------~~~~~~~~~~~d~~~~~~~~~~   99 (258)
                      .++..+||-||+|.|..+..+++.+..+++++|+++.+++.|++.+...         ....+++++.+|+..  +   +
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~--~---l  144 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFE--F---I  144 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHH--H---H
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHH--H---H
Confidence            4566899999999999998888777779999999999999998765321         123478999999732  2   2


Q ss_pred             hhcCCceeEEEeccccccccCCHHH--HHHHHHHHHhcccCCcEEEEEE
Q 025059          100 QEKANQADLVCCFQHLQMCFETEER--ARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~~~~~~~--~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      . ..++||+|++-..-..  .....  -..+++.+.++|+|||+++...
T Consensus       145 ~-~~~~yDvIi~D~~~~~--~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         145 K-NNRGFDVIIADSTDPV--GPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             H-HCCCEEEEEEECCCCC-------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             h-ccCCCCEEEEeCCCCC--CCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            2 3578999987432211  11111  2678999999999999998874

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.67  E-value=7.6e-08  Score=80.77  Aligned_cols=113  Identities=14%  Similarity=0.063  Sum_probs=81.3

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc----CCCceeEEEEcCCCCCchhhhhhhcC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ----RKNFIAEFFEADPCAENFETQMQEKA  103 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (258)
                      .+...+||.||.|.|..+..+++. +..+++++|+++.+++.|++.+...    -...+++++.+|+..     .+...+
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~-----~l~~~~  149 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARA-----YLERTE  149 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHH-----HHHHCC
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHH-----HhhhcC
Confidence            445689999999999999888776 4569999999999999999877431    113378999999743     223356


Q ss_pred             CceeEEEeccccccccCCH-H--HHHHHHHHHHhcccCCcEEEEEE
Q 025059          104 NQADLVCCFQHLQMCFETE-E--RARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~-~--~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      .+||+|++-..-.+..... .  -...+++.++++|+|||+++...
T Consensus       150 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            7899998643111100111 1  12578999999999999998864

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.66  E-value=4.4e-08  Score=76.01  Aligned_cols=110  Identities=13%  Similarity=0.097  Sum_probs=78.3

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCc-eeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .+.+|||+.||||.+....+.+|...++.+|.+..++...+++++..+... ...+...|+..  +.. ......+||+|
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~--~l~-~~~~~~~fDlI  119 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLD--FLK-QPQNQPHFDVV  119 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHH--HTT-SCCSSCCEEEE
T ss_pred             ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccc--ccc-ccccCCcccEE
Confidence            578999999999999999999999999999999999999999987654322 35556665421  100 01134579999


Q ss_pred             EeccccccccCCHHHHHHHHHHHH--hcccCCcEEEEEEcC
Q 025059          110 CCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPD  148 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~--~~LkpgG~~i~~~~~  148 (258)
                      .+--  .|..   ......+..+.  ..|+++|++++..+.
T Consensus       120 FlDP--PY~~---~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         120 FLDP--PFHF---NLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             EECC--CSSS---CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             Eech--hHhh---hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            7643  3311   23445666654  479999999987554

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.66  E-value=6.9e-08  Score=78.25  Aligned_cols=96  Identities=18%  Similarity=0.146  Sum_probs=74.2

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ...+|||||||+|..+..+++.. ..+++++|+.+. ++.+       ....++.+..+|+.+. .      +  ..|++
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~-------~~~~r~~~~~~d~~~~-~------P--~ad~~  143 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA-------PSYPGVEHVGGDMFVS-I------P--KADAV  143 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC-------CCCTTEEEEECCTTTC-C------C--CCSCE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc-------ccCCceEEeccccccc-C------C--CcceE
Confidence            35789999999999999998873 358999998653 3222       2223789999998552 2      2  35677


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +....+|.  .+.++...+|++++++|+|||.+++.
T Consensus       144 ~l~~vlh~--~~d~~~~~iL~~~~~al~pgg~~li~  177 (243)
T d1kyza2         144 FMKWICHD--WSDEHCLKFLKNCYEALPDNGKVIVA  177 (243)
T ss_dssp             ECSSSSTT--SCHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred             EEEEEeec--CCHHHHHHHHHHHHHhcCCCceEEEE
Confidence            77888886  56788999999999999999998887

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.65  E-value=2.6e-08  Score=79.13  Aligned_cols=103  Identities=19%  Similarity=0.218  Sum_probs=71.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      +++.+|||.|||+|.++..+...  ....++|+|+++.++..++          ...+.++|.....       ....||
T Consensus        18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~----------~~~~~~~~~~~~~-------~~~~fd   80 (223)
T d2ih2a1          18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP----------WAEGILADFLLWE-------PGEAFD   80 (223)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT----------TEEEEESCGGGCC-------CSSCEE
T ss_pred             CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc----------cceeeeeehhccc-------cccccc
Confidence            47889999999999998887654  3347999999987754322          3466777753322       357899


Q ss_pred             EEEeccccccccC-------------------------CHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          108 LVCCFQHLQMCFE-------------------------TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       108 ~V~~~~~l~~~~~-------------------------~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +|++.........                         ...-...++..+.+.|+|||.+.+.+|++
T Consensus        81 ~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~  147 (223)
T d2ih2a1          81 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  147 (223)
T ss_dssp             EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             eecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence            9988754321000                         00013466788999999999999998775

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.60  E-value=1.8e-07  Score=75.32  Aligned_cols=63  Identities=8%  Similarity=-0.000  Sum_probs=54.7

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (258)
                      ..++.+|||||||+|.++..++..+. +++++|+++.+++.+++++....   ++.++++|+.+.++
T Consensus        19 ~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~~---n~~i~~~D~l~~~~   81 (235)
T d1qama_          19 LNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDHD---NFQVLNKDILQFKF   81 (235)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTCC---SEEEECCCGGGCCC
T ss_pred             CCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhccc---chhhhhhhhhhccc
Confidence            35899999999999999999998765 99999999999999999886543   79999999976554

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.59  E-value=2e-07  Score=72.00  Aligned_cols=113  Identities=13%  Similarity=0.120  Sum_probs=83.3

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcee
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD  107 (258)
                      ..++..++|.+||.|+.+..++... ++|+|+|.++.+++.|+++..     .++.+++.+..+  +...+.. ..+.+|
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~~-----~~~~~~~~~f~~--~~~~l~~~~~~~vd   87 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLHL-----PGLTVVQGNFRH--LKRHLAALGVERVD   87 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTCC-----TTEEEEESCGGG--HHHHHHHTTCSCEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhccc-----cceeEeehHHHH--HHHHHHHcCCCccC
Confidence            4589999999999999999998875 599999999999999986532     268888888644  3333221 346799


Q ss_pred             EEEecccccc-----ccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          108 LVCCFQHLQM-----CFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       108 ~V~~~~~l~~-----~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .|+.-.++-.     ...........|......|+|||.+++.+..+
T Consensus        88 gIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          88 GILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             EEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             EEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            9977543311     11222345668899999999999999887665

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.58  E-value=3.9e-07  Score=76.02  Aligned_cols=116  Identities=10%  Similarity=0.005  Sum_probs=80.8

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcC---CCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      .+...+||-||-|.|..+..+++.. ..+++.+|+++.+++.|++.++...   ...+++++.+|+..     .+....+
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~-----~l~~~~~  178 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE-----FLKNHKN  178 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH-----HHHHCTT
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHH-----HHHhCCC
Confidence            3456899999999999999998864 4699999999999999998765321   12378899888632     2333578


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +||+|++-..-.......--...+++.++++|+|||+++....+.
T Consensus       179 ~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~  223 (312)
T d2b2ca1         179 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV  223 (312)
T ss_dssp             CEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             CCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence            999998754221110111124778999999999999999985443

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.58  E-value=3.1e-07  Score=76.18  Aligned_cols=115  Identities=17%  Similarity=0.084  Sum_probs=82.4

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcC---CCceeEEEEcCCCCCchhhhhhhcCC
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      .+...+||-||.|.|..+..+++.. ..+++++|+++.+++.|++.++...   ...+++++.+|+..     .+....+
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~-----~l~~~~~  161 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAE-----YVRKFKN  161 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH-----HGGGCSS
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHH-----HHhcCCC
Confidence            3456899999999999998888764 5689999999999999998764321   12378999999732     2333567


Q ss_pred             ceeEEEeccccccccCCHHH--HHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          105 QADLVCCFQHLQMCFETEER--ARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~--~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +||+|++-..-... .....  ...+++.+++.|+|||+++....+.
T Consensus       162 ~yDvIi~D~~dp~~-~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp  207 (295)
T d1inla_         162 EFDVIIIDSTDPTA-GQGGHLFTEEFYQACYDALKEDGVFSAETEDP  207 (295)
T ss_dssp             CEEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             CCCEEEEcCCCCCc-CchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence            89999874321110 00111  3689999999999999999886553

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.1e-07  Score=75.94  Aligned_cols=114  Identities=11%  Similarity=-0.008  Sum_probs=81.3

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc---CCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ---RKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      +...+||-||-|.|..+..+.+. +..+++++|+++.+++.|++.++..   -...+++++.+|+..     .+....++
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~-----~l~~~~~~  151 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE-----FMKQNQDA  151 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH-----HHHTCSSC
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHH-----HHhcCCCC
Confidence            45689999999999999999876 4679999999999999999876431   113388999999632     22234679


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ||+|++-..-.......-.-..+++.++++|+|||+++....+
T Consensus       152 yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         152 FDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             EEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            9999875321111111112357899999999999999988554

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.56  E-value=4.2e-07  Score=74.75  Aligned_cols=116  Identities=12%  Similarity=0.055  Sum_probs=83.7

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc---CCCceeEEEEcCCCCCchhhhhhhcC
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ---RKNFIAEFFEADPCAENFETQMQEKA  103 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (258)
                      ..+...+||-||-|.|..+..+++. +..+++.+|+++++++.|++.++..   -...+++++.+|+..     .+....
T Consensus        72 ~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~-----~l~~~~  146 (274)
T d1iy9a_          72 THPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFM-----HIAKSE  146 (274)
T ss_dssp             HSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHH-----HHHTCC
T ss_pred             ccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHH-----HHhhcC
Confidence            3456689999999999999988876 4579999999999999999876431   123478999999733     122246


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ++||+|++-..-.......---..+++.+.++|+|||+++....+
T Consensus       147 ~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence            789999875321110000001367899999999999999988554

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.53  E-value=1.7e-08  Score=81.90  Aligned_cols=77  Identities=12%  Similarity=0.028  Sum_probs=62.5

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||||||+|.++..++..+. +++++|+++.+++.+++++....   ++.++++|+.+.++      +...++.
T Consensus        27 ~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~~---n~~ii~~D~l~~~~------~~~~~~~   96 (245)
T d1yuba_          27 LKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLNT---RVTLIHQDILQFQF------PNKQRYK   96 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTCS---EEEECCSCCTTTTC------CCSSEEE
T ss_pred             CCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhcc---chhhhhhhhhcccc------ccceeee
Confidence            45788999999999999999988765 99999999999998888776543   79999999987665      4566666


Q ss_pred             EEecccc
Q 025059          109 VCCFQHL  115 (258)
Q Consensus       109 V~~~~~l  115 (258)
                      |+++...
T Consensus        97 vv~NLPY  103 (245)
T d1yuba_          97 IVGNIPY  103 (245)
T ss_dssp             EEEECCS
T ss_pred             Eeeeeeh
Confidence            6665443

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.52  E-value=2.5e-07  Score=76.75  Aligned_cols=115  Identities=14%  Similarity=0.099  Sum_probs=82.3

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhc---CCCceeEEEEcCCCCCchhhhhhh-cCC
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ---RKNFIAEFFEADPCAENFETQMQE-KAN  104 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~-~~~  104 (258)
                      +...+||=||-|.|..+..+.+. +..+++++|+++++++.|++.++..   ....+++++.+|+..  +   +.. ..+
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~--~---l~~~~~~  153 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVA--F---LKNAAEG  153 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHH--H---HHTSCTT
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHH--H---Hhhcccc
Confidence            45689999999999999998887 4468999999999999999866431   113378999999632  1   211 346


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      +||+|++-..-.......--...+++.++++|+|||+++....+.
T Consensus       154 ~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         154 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             CccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence            899998643211100001113678999999999999999986654

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=5.1e-07  Score=69.62  Aligned_cols=112  Identities=18%  Similarity=0.102  Sum_probs=78.0

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhh--hhcC
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM--QEKA  103 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~  103 (258)
                      .++++.+||||||++|++++.+...  ....++++|+.+..         .   -..+.++++|+.+.......  ....
T Consensus        19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~---------~---i~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T d1ej0a_          19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD---------P---IVGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC---------C---CTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc---------c---cCCceEeecccccchhhhhhhhhccC
Confidence            3568999999999999999988765  44689999986521         1   12678999998764432221  1145


Q ss_pred             CceeEEEeccccccc-------cCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059          104 NQADLVCCFQHLQMC-------FETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~-------~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~  151 (258)
                      .++|+|++-.+....       ....+-....+.-+.++|++||.|++=..++..
T Consensus        87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~  141 (180)
T d1ej0a_          87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG  141 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred             cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc
Confidence            789999997654321       011122356777888999999999998776643

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=1.8e-06  Score=67.82  Aligned_cols=110  Identities=12%  Similarity=0.037  Sum_probs=82.8

Q ss_pred             HHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh
Q 025059           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (258)
Q Consensus        20 ~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   98 (258)
                      +-+..+-.+++ +.+|||+|||.|-=..-++-. +..+++.+|.+..-+...++-....++. +++.++..+.+..    
T Consensus        55 ~DSl~~~~~~~-~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~----  128 (207)
T d1jsxa_          55 LDSIVVAPYLQ-GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP----  128 (207)
T ss_dssp             HHHHHHGGGCC-SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC----
T ss_pred             cchHhhhhhhc-CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhc----
Confidence            34455555554 579999999999666666554 4469999999999988888777666553 7899999886643    


Q ss_pred             hhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                         ...+||+|++-..     .   .+..+++-+...+++||.+++..
T Consensus       129 ---~~~~fD~V~sRA~-----~---~~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         129 ---SEPPFDGVISRAF-----A---SLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             ---CCSCEEEEECSCS-----S---SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ---cccccceehhhhh-----c---CHHHHHHHHHHhcCCCcEEEEEC
Confidence               3568999987542     1   26678888999999999998873

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.37  E-value=8.1e-07  Score=71.15  Aligned_cols=111  Identities=14%  Similarity=0.086  Sum_probs=71.4

Q ss_pred             HHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc-----CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCC
Q 025059           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE   93 (258)
Q Consensus        19 ~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~   93 (258)
                      ++.+.||...-  +.+|||||++.|+.+..++..     ..++++|+|+.+.....+..   .   ..++.++++|..+.
T Consensus        70 ~~~~eli~~~K--Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~---~---~~~I~~i~gDs~~~  141 (232)
T d2bm8a1          70 AVYHDMLWELR--PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---D---MENITLHQGDCSDL  141 (232)
T ss_dssp             HHHHHHHHHHC--CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---G---CTTEEEEECCSSCS
T ss_pred             HHHHHHHHHhC--CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc---c---ccceeeeecccccH
Confidence            34455555554  479999999999877655432     34699999998755332211   1   12789999998765


Q ss_pred             chhhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .....+  ....+|.|+.-.+ |.   ....... + +...+|++||++++.
T Consensus       142 ~~~~~l--~~~~~dlIfID~~-H~---~~~v~~~-~-~~~~lLk~GG~iIve  185 (232)
T d2bm8a1         142 TTFEHL--REMAHPLIFIDNA-HA---NTFNIMK-W-AVDHLLEEGDYFIIE  185 (232)
T ss_dssp             GGGGGG--SSSCSSEEEEESS-CS---SHHHHHH-H-HHHHTCCTTCEEEEC
T ss_pred             HHHHHH--HhcCCCEEEEcCC-cc---hHHHHHH-H-HHhcccCcCCEEEEE
Confidence            554443  3456788766443 42   2333332 3 356899999999886

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=3.4e-06  Score=71.67  Aligned_cols=115  Identities=17%  Similarity=0.151  Sum_probs=78.5

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      ..++.+|||+.||.|.++..+++.. .+|+|+|+++.+++.|+++...++.. ++.|+.+|+......  ......++|+
T Consensus       210 ~~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~~~~~~~~~~~--~~~~~~~~d~  285 (358)
T d1uwva2         210 VQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTK--QPWAKNGFDK  285 (358)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSS--SGGGTTCCSE
T ss_pred             cCCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccc-cceeeecchhhhhhh--hhhhhccCce
Confidence            3467899999999999999887654 49999999999999999998877654 789999998653211  1113578999


Q ss_pred             EEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHH
Q 025059          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (258)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~  156 (258)
                      |+.--. +      ..+...+..+.+. +|.-+++++ .|...+.+-+
T Consensus       286 vilDPP-R------~G~~~~~~~l~~~-~~~~ivYVS-Cnp~TlaRDl  324 (358)
T d1uwva2         286 VLLDPA-R------AGAAGVMQQIIKL-EPIRIVYVS-CNPATLARDS  324 (358)
T ss_dssp             EEECCC-T------TCCHHHHHHHHHH-CCSEEEEEE-SCHHHHHHHH
T ss_pred             EEeCCC-C------ccHHHHHHHHHHc-CCCEEEEEe-CCHHHHHHHH
Confidence            976431 1      1123345555543 666555555 5554444433

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.31  E-value=2.8e-06  Score=71.06  Aligned_cols=112  Identities=18%  Similarity=0.095  Sum_probs=79.1

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      ++|.+|||+|||.|+=+..++..  ..+.+++.|+++.-+...++++...+.. ++.....|....+.      ....||
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~~~~~~------~~~~fD  187 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGE------LNVEFD  187 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGG------GCCCEE
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-cccccccccccccc------cccccc
Confidence            48999999999999977777654  4458999999999999998888776542 55666666433222      467899


Q ss_pred             EEEeccc------cccc-----cCCH-------HHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          108 LVCCFQH------LQMC-----FETE-------ERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       108 ~V~~~~~------l~~~-----~~~~-------~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      .|++-..      ++..     -.+.       .....++.+..+.|||||.++-+|.+
T Consensus       188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS  246 (313)
T d1ixka_         188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS  246 (313)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence            9977321      1100     0111       23467889999999999998877655

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.1e-05  Score=66.10  Aligned_cols=66  Identities=11%  Similarity=0.048  Sum_probs=56.6

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (258)
                      ..++..|||||+|+|.++..++..+. +++++++++.+++..++++.......+++++.+|+...++
T Consensus        19 ~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~   84 (278)
T d1zq9a1          19 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL   84 (278)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred             CCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence            44789999999999999999998875 9999999999999999988765444489999999976543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.27  E-value=1.5e-06  Score=75.81  Aligned_cols=123  Identities=19%  Similarity=0.146  Sum_probs=84.3

Q ss_pred             HHHHHHHHhcC-CCCEEEEEcCCCCccHHHHHHc----C----------CCeEEEEecChhHHHHHHHHHHhcCCC-cee
Q 025059           20 AKTALIKIYSH-PYVTVCDLYCGAGVDVDKWETA----L----------IANYIGIDVATSGIGEARDTWENQRKN-FIA   83 (258)
Q Consensus        20 ~k~~li~~~~~-~~~~VLDlGcG~G~~~~~~~~~----~----------~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~   83 (258)
                      +...++....+ ++.+|+|.+||+|+++..+.+.    .          ...+.|+|+++.+...|+.++.-++.. ...
T Consensus       150 Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~  229 (425)
T d2okca1         150 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS  229 (425)
T ss_dssp             HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred             hhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence            33344444433 5789999999999999877653    1          125999999999999998877654322 134


Q ss_pred             EEEEcCCCCCchhhhhhhcCCceeEEEeccccccc-------------cCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059           84 EFFEADPCAENFETQMQEKANQADLVCCFQHLQMC-------------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus        84 ~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-------------~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      .+...|.....       +..+||+|+++-....-             .........++..+.+.|++||.+.+.+|++
T Consensus       230 ~i~~~d~l~~~-------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~  301 (425)
T d2okca1         230 PIVCEDSLEKE-------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  301 (425)
T ss_dssp             SEEECCTTTSC-------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             eeecCchhhhh-------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechH
Confidence            56677764432       46789999997544210             0111223468999999999999999988865

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.24  E-value=5.3e-06  Score=70.91  Aligned_cols=109  Identities=11%  Similarity=0.025  Sum_probs=77.3

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCC--------------ceeEEEEcCCCCCch
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKN--------------FIAEFFEADPCAENF   95 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~--------------~~~~~~~~d~~~~~~   95 (258)
                      .+.+|||..||+|..+..++.. +...|++.|+|+.+++.++++.+.++..              ..+...+.|+..   
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~---  121 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANR---  121 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHH---
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhh---
Confidence            3589999999999999877664 6668999999999999999998765321              124455555421   


Q ss_pred             hhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHH
Q 025059           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (258)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~  152 (258)
                        .+......||+|-+--     |.+   ...++....+.++.||.+.+|..|...+
T Consensus       122 --~~~~~~~~fDvIDiDP-----fGs---~~pfldsAi~a~~~~Gll~vTaTD~a~L  168 (375)
T d2dula1         122 --LMAERHRYFHFIDLDP-----FGS---PMEFLDTALRSAKRRGILGVTATDGAPL  168 (375)
T ss_dssp             --HHHHSTTCEEEEEECC-----SSC---CHHHHHHHHHHEEEEEEEEEEECCHHHH
T ss_pred             --hhHhhcCcCCcccCCC-----CCC---cHHHHHHHHHHhccCCEEEEEecCchhh
Confidence              1222456899996532     111   2347777778899999999997776444

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=4.5e-06  Score=68.83  Aligned_cols=113  Identities=14%  Similarity=0.079  Sum_probs=77.5

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeE
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (258)
                      .++.+|||+|+|.|+=+..++.. ..+.++++|+++.-+...+++++..+.  +......+......  .  ...+.||.
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~--~~~~~~~~~~~~~~--~--~~~~~fd~  174 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQ--W--CGEQQFDR  174 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHH--H--HTTCCEEE
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc--cceeeeccccccch--h--cccccccE
Confidence            47899999999999988888765 336899999999999999998887754  33333333222111  1  13578999


Q ss_pred             EEecc------cccc------ccCC------HHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          109 VCCFQ------HLQM------CFET------EERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       109 V~~~~------~l~~------~~~~------~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      |++-.      .+..      ....      ..-...+|.++.+.|+|||+++-++.+
T Consensus       175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS  232 (284)
T d1sqga2         175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS  232 (284)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred             EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence            97632      1110      0000      122478899999999999999888665

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=1.8e-06  Score=69.90  Aligned_cols=64  Identities=9%  Similarity=-0.005  Sum_probs=53.3

Q ss_pred             cCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh
Q 025059           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (258)
                      ..++..|||||||+|.++..++..+. +++++|+++.+++..+++.....   ++.++++|+...++.
T Consensus        19 ~~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~---~~~ii~~D~l~~~~~   82 (252)
T d1qyra_          19 PQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFLGP---KLTIYQQDAMTFNFG   82 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTTGG---GEEEECSCGGGCCHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhhcc---chhHHhhhhhhhccc
Confidence            34788999999999999999987765 89999999999999887654332   799999999776553

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=1.3e-05  Score=71.61  Aligned_cols=124  Identities=15%  Similarity=0.131  Sum_probs=78.8

Q ss_pred             HHHHHHHhcC-CCCEEEEEcCCCCccHHHHHHc---C----------------CCeEEEEecChhHHHHHHHHHHhcCCC
Q 025059           21 KTALIKIYSH-PYVTVCDLYCGAGVDVDKWETA---L----------------IANYIGIDVATSGIGEARDTWENQRKN   80 (258)
Q Consensus        21 k~~li~~~~~-~~~~VLDlGcG~G~~~~~~~~~---~----------------~~~v~gvD~s~~~l~~a~~~~~~~~~~   80 (258)
                      ...++....+ ++.+|+|.+||+|+++......   .                ...++|+|+++.+...|+-.+--++..
T Consensus       153 v~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~  232 (524)
T d2ar0a1         153 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE  232 (524)
T ss_dssp             HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred             hHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccc
Confidence            3344443333 5789999999999999776542   0                125899999999999988776544321


Q ss_pred             c----eeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccc----------cCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059           81 F----IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC----------FETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus        81 ~----~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~----------~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      .    ...+...+....+.     ....+||+|+++-.....          ......--.++..+.+.|+|||.+.+.+
T Consensus       233 ~~i~~~~~~~~~~~l~~d~-----~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl  307 (524)
T d2ar0a1         233 GNLDHGGAIRLGNTLGSDG-----ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV  307 (524)
T ss_dssp             CBGGGTBSEEESCTTSHHH-----HTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhhhhhhhhhcc-----cccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence            1    11233344322111     135689999987533110          0111123458999999999999999998


Q ss_pred             cCc
Q 025059          147 PDS  149 (258)
Q Consensus       147 ~~~  149 (258)
                      |++
T Consensus       308 P~~  310 (524)
T d2ar0a1         308 PDN  310 (524)
T ss_dssp             EHH
T ss_pred             ehH
Confidence            865

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=5.7e-05  Score=62.24  Aligned_cols=114  Identities=11%  Similarity=0.005  Sum_probs=75.6

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .++.+|||+|||.|+-+..++..  +.+.++++|+++.-++..+++++..+.. ++.+...|........   ...+.||
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~---~~~~~fD  168 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSD---PRYHEVH  168 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTC---GGGTTEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcccc---cccceee
Confidence            47899999999999988777654  4568999999999999999988877543 5778888864432110   0236799


Q ss_pred             EEEecccc------cc------cc--C--CHH----HHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          108 LVCCFQHL------QM------CF--E--TEE----RARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       108 ~V~~~~~l------~~------~~--~--~~~----~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      .|++-.-.      ..      ..  .  ...    ....++.+.. .++|||.++-++.+
T Consensus       169 ~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCS  228 (293)
T d2b9ea1         169 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCS  228 (293)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESC
T ss_pred             EEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeecc
Confidence            99774211      00      00  0  001    1134555555 47999998877654

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.94  E-value=4.4e-05  Score=60.89  Aligned_cols=113  Identities=17%  Similarity=0.153  Sum_probs=78.4

Q ss_pred             HHHHHHhcC--CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh
Q 025059           22 TALIKIYSH--PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (258)
Q Consensus        22 ~~li~~~~~--~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   98 (258)
                      +..+..+.+  +..+|+|+|+|.|-=..-++-. +..+++.+|.+..-+...+.-....++. ++.+++..+......  
T Consensus        59 Sl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~--  135 (239)
T d1xdza_          59 SITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQR--  135 (239)
T ss_dssp             HHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTC--
T ss_pred             hhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhcccc--
Confidence            333444544  5679999999999655555543 5569999999998888777666655543 677777765321110  


Q ss_pred             hhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                       ....++||+|++-..-        .+..+++-+...+++||.+++.-
T Consensus       136 -~~~~~~~D~v~sRAva--------~l~~ll~~~~~~l~~~g~~i~~K  174 (239)
T d1xdza_         136 -KDVRESYDIVTARAVA--------RLSVLSELCLPLVKKNGLFVALK  174 (239)
T ss_dssp             -TTTTTCEEEEEEECCS--------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             -ccccccceEEEEhhhh--------CHHHHHHHHhhhcccCCEEEEEC
Confidence             0124689999886421        26778999999999999998873

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.81  E-value=1.7e-05  Score=63.29  Aligned_cols=119  Identities=18%  Similarity=0.128  Sum_probs=69.2

Q ss_pred             hcCCCCEEEEEcCCCCccHHHHHHcC-CCeEEEEecChhHHHHHHHHHHhcCCCc-eeEEEEcCCCCCchhhhhhhcCCc
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      ++.|..+|+|||||.|+++..++... ...+.|+|+--...+   ........+. -+.+...+... .+      +++.
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e---~P~~~~~~~~ni~~~~~~~dv~-~l------~~~~  132 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE---EPIPMSTYGWNLVRLQSGVDVF-FI------PPER  132 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC---CCCCCCSTTGGGEEEECSCCTT-TS------CCCC
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc---CCccccccccccccchhhhhHH-hc------CCCc
Confidence            56788899999999999999987763 346788887422100   0000000011 23343333211 11      4688


Q ss_pred             eeEEEeccccccccCCHH--HHHHHHHHHHhcccCCcEEEEEEcC--chHHHHHH
Q 025059          106 ADLVCCFQHLQMCFETEE--RARRLLQNVSSLLKPGGYFLGITPD--SSTIWAKY  156 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~--~~~~~l~~i~~~LkpgG~~i~~~~~--~~~~~~~~  156 (258)
                      .|+|+|-.+-...-...+  ....+++-+.+.|+|||.|++=...  .+...+++
T Consensus       133 ~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~l  187 (257)
T d2p41a1         133 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKM  187 (257)
T ss_dssp             CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHH
T ss_pred             CCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHH
Confidence            999999765431111112  2235677788999999999887555  44455444

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.98  E-value=0.00099  Score=52.71  Aligned_cols=55  Identities=22%  Similarity=0.250  Sum_probs=47.0

Q ss_pred             HHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHH
Q 025059           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE   75 (258)
Q Consensus        20 ~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~   75 (258)
                      +-..+|+.+..+|..|||.-||+|..+......+- +.+|+|++++.++.|++|++
T Consensus       201 L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         201 LIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence            34456777788999999999999988777766665 99999999999999999975

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.00081  Score=55.82  Aligned_cols=58  Identities=19%  Similarity=0.249  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCC
Q 025059           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA   92 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~   92 (258)
                      .+..|||||+|.|.++..++.. ...+++++|+++..++..++++...    ++.++++|+..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~----~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGS----PLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTS----SCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCC----CcEEEeCchhh
Confidence            4678999999999999999876 4569999999999999998887543    78899999865

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.89  E-value=0.00065  Score=55.54  Aligned_cols=55  Identities=13%  Similarity=0.196  Sum_probs=47.0

Q ss_pred             HHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHh
Q 025059           21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN   76 (258)
Q Consensus        21 k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~   76 (258)
                      -..+|....+++..|||.-||+|..+......+- +.+|+|++++.++.|++|+..
T Consensus       240 ~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         240 PEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHhhhhcccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence            3456677788999999999999988877766665 999999999999999999764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.76  E-value=0.002  Score=48.36  Aligned_cols=99  Identities=17%  Similarity=0.110  Sum_probs=64.6

Q ss_pred             hcCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cC
Q 025059           28 YSHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~  103 (258)
                      ..+|+.+||=+|||. |..+.++++. +..+++++|.++.-++.|++.-.       ..++..  .+....+.+.+  ..
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa-------~~~i~~--~~~~~~~~v~~~t~g   94 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA-------TDILNY--KNGHIEDQVMKLTNG   94 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC-------SEEECG--GGSCHHHHHHHHTTT
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc-------cccccc--cchhHHHHHHHHhhc
Confidence            456899999999997 6667777776 44589999999998888865321       122222  22223222211  23


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ..+|+|+-.-..          ...+.+..++++|+|.+++.
T Consensus        95 ~G~D~vid~~g~----------~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2          95 KGVDRVIMAGGG----------SETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             SCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             cCcceEEEccCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            459998764422          13566677899999999886

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.75  E-value=0.009  Score=44.06  Aligned_cols=102  Identities=12%  Similarity=0.062  Sum_probs=64.7

Q ss_pred             HhcCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh---hhhhh-
Q 025059           27 IYSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE---TQMQE-  101 (258)
Q Consensus        27 ~~~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~-  101 (258)
                      .-.+++.+||=+|||. |..+..+++....+++++|.++.-++.|++.-.      ...+ ..+-......   ..+.. 
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga------~~~~-~~~~~~~~~~~~~~~~~~~   94 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA------DVTL-VVDPAKEEESSIIERIRSA   94 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC------SEEE-ECCTTTSCHHHHHHHHHHH
T ss_pred             hCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC------cEEE-eccccccccchhhhhhhcc
Confidence            3456899999999985 555555666544599999999999988876422      2222 2222222211   11111 


Q ss_pred             cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ....+|+|+-.-.          ....+....++++|+|.+++.
T Consensus        95 ~g~g~D~vid~~g----------~~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2          95 IGDLPNVTIDCSG----------NEKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             SSSCCSEEEECSC----------CHHHHHHHHHHSCTTCEEEEC
T ss_pred             cccCCceeeecCC----------ChHHHHHHHHHHhcCCceEEE
Confidence            2467899865432          124567777899999999877

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.73  E-value=0.0018  Score=51.87  Aligned_cols=57  Identities=25%  Similarity=0.175  Sum_probs=49.0

Q ss_pred             HHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhc
Q 025059           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (258)
Q Consensus        20 ~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~   77 (258)
                      +-..+|..+..+|..|||.-||+|..+.+....+- +.+|+|+++..++.|++|+...
T Consensus       196 L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         196 VIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            34457778888999999999999988877766665 9999999999999999999764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.00089  Score=49.96  Aligned_cols=103  Identities=15%  Similarity=0.063  Sum_probs=63.7

Q ss_pred             HHHHhcCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 025059           24 LIKIYSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (258)
Q Consensus        24 li~~~~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (258)
                      +.....+|+.+||-+|+|. |..+.++++....+++++|.+++.++.|++.-.      . .++... .+.....   ..
T Consensus        20 l~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa------~-~~i~~~-~~~~~~~---~~   88 (168)
T d1piwa2          20 LVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGA------D-HYIATL-EEGDWGE---KY   88 (168)
T ss_dssp             HHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC------S-EEEEGG-GTSCHHH---HS
T ss_pred             HHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCC------c-EEeecc-chHHHHH---hh
Confidence            3334567999999999984 566666665533489999999999998875421      1 222211 1111211   13


Q ss_pred             CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+.+|+|+..-+...        ...+....++|+|+|.+++.
T Consensus        89 ~~~~d~vi~~~~~~~--------~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          89 FDTFDLIVVCASSLT--------DIDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             CSCEEEEEECCSCST--------TCCTTTGGGGEEEEEEEEEC
T ss_pred             hcccceEEEEecCCc--------cchHHHHHHHhhccceEEEe
Confidence            568998876432211        01234578899999999876

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.55  E-value=0.0027  Score=48.61  Aligned_cols=109  Identities=14%  Similarity=0.024  Sum_probs=68.3

Q ss_pred             HhcCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--c
Q 025059           27 IYSHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--K  102 (258)
Q Consensus        27 ~~~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~  102 (258)
                      .-.+++.+||-+|||. |..+..+++. +..+++++|.++.-++.|++.-        +.... +-.+.++.+...+  .
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G--------a~~~~-~~~~~~~~~~i~~~t~   91 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG--------FEIAD-LSLDTPLHEQIAALLG   91 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT--------CEEEE-TTSSSCHHHHHHHHHS
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc--------ccEEE-eCCCcCHHHHHHHHhC
Confidence            3466999999999998 4455555544 6669999999999998887542        22222 2222333322211  3


Q ss_pred             CCceeEEEecccc------ccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQHL------QMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~~l------~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ...+|+++-.-..      +.... .......++.+.++++|||.+.+.
T Consensus        92 g~g~D~vid~vG~~~~~~~~~~~~-~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          92 EPEVDCAVDAVGFEARGHGHEGAK-HEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGG-SBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCcEEEEECccccccCCccccee-ecCcHHHHHHHHHHHhcCCEEEEe
Confidence            4578998754321      11100 011245788899999999999877

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.46  E-value=0.0029  Score=50.31  Aligned_cols=76  Identities=9%  Similarity=-0.038  Sum_probs=53.6

Q ss_pred             CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHH---HHHHhcCC-----CceeEEEEcCCCCCchhhhhhhcCC
Q 025059           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR---DTWENQRK-----NFIAEFFEADPCAENFETQMQEKAN  104 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~---~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~  104 (258)
                      .+|||+.||.|.++..++..+. +|++++-++.+....+   +++.....     ..+++++++|..+  +   +.....
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~--~---L~~~~~  163 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT--A---LTDITP  163 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH--H---STTCSS
T ss_pred             CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHH--H---HhccCC
Confidence            4899999999999999998876 8999999997655444   34332210     1268999999532  1   222356


Q ss_pred             ceeEEEeccc
Q 025059          105 QADLVCCFQH  114 (258)
Q Consensus       105 ~fD~V~~~~~  114 (258)
                      .||+|..--+
T Consensus       164 ~~DvIYlDPM  173 (250)
T d2oyra1         164 RPQVVYLDPM  173 (250)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999987553

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.39  E-value=0.008  Score=44.23  Aligned_cols=98  Identities=14%  Similarity=0.116  Sum_probs=60.4

Q ss_pred             hcCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh-hcCCc
Q 025059           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQ  105 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~  105 (258)
                      -.+|+.+||=+|||. |..+..+++....+++++|.++.-++.+++.-.       ..++..+  +....+.+. ...+.
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga-------~~~i~~~--~~~~~~~~~~~~~g~   94 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA-------SLTVNAR--QEDPVEAIQRDIGGA   94 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC-------SEEEETT--TSCHHHHHHHHHSSE
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc-------ccccccc--chhHHHHHHHhhcCC
Confidence            456899999999986 444555555543599999999999888765321       1233222  222322221 12344


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .|.|.+..       .    ...+....++|+|||.+++.
T Consensus        95 ~~~i~~~~-------~----~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          95 HGVLVTAV-------S----NSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             EEEEECCS-------C----HHHHHHHHTTEEEEEEEEEC
T ss_pred             cccccccc-------c----chHHHHHHHHhcCCcEEEEE
Confidence            45554332       1    23567788999999999875

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.34  E-value=0.0091  Score=43.82  Aligned_cols=100  Identities=17%  Similarity=0.170  Sum_probs=60.9

Q ss_pred             HHhcCCCCEEEEEcCCCCccH-HHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cC
Q 025059           26 KIYSHPYVTVCDLYCGAGVDV-DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KA  103 (258)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~-~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~  103 (258)
                      ....+|+.+||=.|||.-+.+ ..+++....+++++|.+++-++.+++.-        +.... |-.+..+...+.. ..
T Consensus        22 ~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~G--------a~~~~-~~~~~~~~~~~~~~~~   92 (168)
T d1rjwa2          22 VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELG--------ADLVV-NPLKEDAAKFMKEKVG   92 (168)
T ss_dssp             HHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT--------CSEEE-CTTTSCHHHHHHHHHS
T ss_pred             HhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcC--------cceec-ccccchhhhhcccccC
Confidence            345678999999999875544 3444444448999999999988876531        12221 2222223222222 23


Q ss_pred             CceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +..|+|.+..           ....+....++|+|||.+++.
T Consensus        93 ~~~~~v~~~~-----------~~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2          93 GVHAAVVTAV-----------SKPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             SEEEEEESSC-----------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCceEEeecC-----------CHHHHHHHHHHhccCCceEec
Confidence            4455554322           124577788899999999876

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.31  E-value=0.0011  Score=50.03  Aligned_cols=98  Identities=19%  Similarity=0.107  Sum_probs=62.1

Q ss_pred             cCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh---hhh--
Q 025059           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ---MQE--  101 (258)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~--  101 (258)
                      .++|.+||-+|||. |..+..+++. +..+|+++|.+++.++.|++.-.      . ..+  |..+....+.   +..  
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa------~-~vi--~~~~~~~~~~~~~i~~~~   96 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA------D-LTL--NRRETSVEERRKAIMDIT   96 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC------S-EEE--ETTTSCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccc------e-EEE--eccccchHHHHHHHHHhh
Confidence            35899999999984 5566666665 54589999999999988865311      1 222  2222222111   111  


Q ss_pred             cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ....+|+|+..-+.          ...++...++|++||.+++.
T Consensus        97 ~~~g~Dvvid~vG~----------~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2          97 HGRGADFILEATGD----------SRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             TTSCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCceEEeecCCc----------hhHHHHHHHHhcCCCEEEEE
Confidence            23469998754321          23567778899999998765

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0096  Score=44.21  Aligned_cols=97  Identities=16%  Similarity=0.139  Sum_probs=63.2

Q ss_pred             cCCCCEEEEEcC-C-CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGc-G-~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (258)
                      ++|+.+||-.|+ | -|..+.++++....++++++.+++.++.+++.-.      . ..+  |..+..+.+.+..  ...
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga------~-~vi--~~~~~~~~~~i~~~t~~~   96 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA------H-EVF--NHREVNYIDKIKKYVGEK   96 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC------S-EEE--ETTSTTHHHHHHHHHCTT
T ss_pred             CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCc------c-ccc--ccccccHHHHhhhhhccC
Confidence            458999999997 3 4566667766644589999989887777764211      1 222  3333344333221  356


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+..-+           ...+.+..++|+|+|.++..
T Consensus        97 g~d~v~d~~g-----------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          97 GIDIIIEMLA-----------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             CEEEEEESCH-----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CceEEeeccc-----------HHHHHHHHhccCCCCEEEEE
Confidence            7999976431           23567778899999999875

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.12  E-value=0.023  Score=45.88  Aligned_cols=103  Identities=12%  Similarity=-0.004  Sum_probs=67.9

Q ss_pred             CEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEec
Q 025059           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~  112 (258)
                      ++||||-||-|++...+...++.-+.++|+++.+.+.-+.++       .....++|+.+....     .-...|+++..
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~-------~~~~~~~Di~~~~~~-----~~~~~dll~~g   68 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-------SAKLIKGDISKISSD-----EFPKCDGIIGG   68 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC-------CSEEEESCTTTSCGG-----GSCCCSEEEEC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-------CCCCccCChhhCCHh-----HcccccEEeec
Confidence            479999999999998887778866779999998887766554       235678998775542     23468999876


Q ss_pred             ccccc--------ccCCHH-HHHHHHHHHHhcccCCcEEEEEEc
Q 025059          113 QHLQM--------CFETEE-RARRLLQNVSSLLKPGGYFLGITP  147 (258)
Q Consensus       113 ~~l~~--------~~~~~~-~~~~~l~~i~~~LkpgG~~i~~~~  147 (258)
                      +....        -..... .+-.-+-.+...++|.-+++=-.+
T Consensus        69 ~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~  112 (324)
T d1dcta_          69 PPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVK  112 (324)
T ss_dssp             CCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred             ccccccccccccccccccccchHHHHHHHHHhhCCceeeccccc
Confidence            53321        122222 232233446677889754443343

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0097  Score=44.04  Aligned_cols=102  Identities=10%  Similarity=-0.041  Sum_probs=63.5

Q ss_pred             HhcCCCCEEEEEcCCCCccH-HHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCc-hhhhh-hhc
Q 025059           27 IYSHPYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FETQM-QEK  102 (258)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~-~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~-~~~  102 (258)
                      ....|+.+||=+|||..+.+ ..+++. +..+++++|.++.-++.|++.-.      . .....+-.+.. ....+ ...
T Consensus        22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga------~-~~~~~~~~~~~~~~~~~~~~~   94 (171)
T d1pl8a2          22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA------D-LVLQISKESPQEIARKVEGQL   94 (171)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC------S-EEEECSSCCHHHHHHHHHHHH
T ss_pred             hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCC------c-ccccccccccccccccccccC
Confidence            34568999999999875443 444444 55589999999999998865421      1 12222211110 11111 113


Q ss_pred             CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      ...+|+|+..-+.          ...++...+++++||.+++.
T Consensus        95 g~g~Dvvid~~G~----------~~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2          95 GCKPEVTIECTGA----------EASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             TSCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCCceEEEeccCC----------chhHHHHHHHhcCCCEEEEE
Confidence            4678998764421          24677888899999999887

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.00  E-value=0.01  Score=46.95  Aligned_cols=115  Identities=15%  Similarity=0.082  Sum_probs=77.3

Q ss_pred             CCCCEEEEEcCCCCccHHHHHHcC-----------------------------------------CCeEEEEecChhHHH
Q 025059           30 HPYVTVCDLYCGAGVDVDKWETAL-----------------------------------------IANYIGIDVATSGIG   68 (258)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~~~~~~-----------------------------------------~~~v~gvD~s~~~l~   68 (258)
                      ..+..++|..||+|.++...+...                                         ...+.|.|+++.+++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            456789999999999887664310                                         014678899999988


Q ss_pred             HHH---HHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccccC-----CHHHHHHHHHHHHhcccCCc
Q 025059           69 EAR---DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE-----TEERARRLLQNVSSLLKPGG  140 (258)
Q Consensus        69 ~a~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-----~~~~~~~~l~~i~~~LkpgG  140 (258)
                      .|+   ++....+....+.+.+.|+++..-..... +....++|+++---.--+.     ..+.+..+...+.+++....
T Consensus       129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~-~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s  207 (249)
T d1o9ga_         129 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVL-AGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA  207 (249)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH-TTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHcCCCceeeeeecchhccCcchhcc-CCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCc
Confidence            874   46666666557899999986643222211 3467789998743221111     23567888888999997777


Q ss_pred             EEEEE
Q 025059          141 YFLGI  145 (258)
Q Consensus       141 ~~i~~  145 (258)
                      .++++
T Consensus       208 ~~~it  212 (249)
T d1o9ga_         208 VIAVT  212 (249)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77665

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.86  E-value=0.023  Score=42.12  Aligned_cols=98  Identities=10%  Similarity=0.025  Sum_probs=63.4

Q ss_pred             cCCCCEEEEEcCCCCc-cHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh-hcCCc
Q 025059           29 SHPYVTVCDLYCGAGV-DVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~-~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~  105 (258)
                      .+|+.+||=+|||.-+ .+..+++. +...++.+|.++.-++.|++.-       -.+++..+  +....+.+. -.++.
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~G-------a~~~i~~~--~~~~~~~i~~~t~gg   96 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG-------ATHVINSK--TQDPVAAIKEITDGG   96 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT-------CSEEEETT--TSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcC-------CeEEEeCC--CcCHHHHHHHHcCCC
Confidence            5689999999998643 33444443 6668899999999888887542       12333333  222322221 13568


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+|+-.-.          ....++...++++|+|.+++.
T Consensus        97 ~D~vid~~G----------~~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          97 VNFALESTG----------SPEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             EEEEEECSC----------CHHHHHHHHHTEEEEEEEEEC
T ss_pred             CcEEEEcCC----------cHHHHHHHHhcccCceEEEEE
Confidence            999975432          124667788899999999876

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.80  E-value=0.0058  Score=45.72  Aligned_cols=101  Identities=13%  Similarity=0.059  Sum_probs=64.7

Q ss_pred             hcCCCCEEEEEcCCC-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh-hcCC
Q 025059           28 YSHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKAN  104 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~  104 (258)
                      -.+|+.+||=+|||. |..+..+++. +...++.+|.++.-++.|++.-.       ...+...-.+........ ...+
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga-------~~~i~~~~~~~~~~~~~~~~~~~   97 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA-------TDCLNPRELDKPVQDVITELTAG   97 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-------SEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC-------CcccCCccchhhhhhhHhhhhcC
Confidence            356899999999998 6666666665 55689999999998888875421       122221111111111110 1356


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~~i~~  145 (258)
                      .+|+|+-.-.          ....+.+..+.+++| |.+++.
T Consensus        98 G~d~vie~~G----------~~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2          98 GVDYSLDCAG----------TAQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             CBSEEEESSC----------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCcEEEEecc----------cchHHHHHHHHhhcCCeEEEec
Confidence            7999965432          234678888899996 998876

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=95.75  E-value=0.0072  Score=50.49  Aligned_cols=109  Identities=14%  Similarity=0.075  Sum_probs=66.0

Q ss_pred             CEEEEEcCCCCccHHHHHHc---------------CC--CeEEEEecChhHHHHHHHHHHhcCCCceeEE---EEcCCCC
Q 025059           33 VTVCDLYCGAGVDVDKWETA---------------LI--ANYIGIDVATSGIGEARDTWENQRKNFIAEF---FEADPCA   92 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~---------------~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~---~~~d~~~   92 (258)
                      .+|.|+||..|.++..+...               ..  -++..-|.-.+=....-+.++........-|   +.+..-.
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~  132 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence            67999999999988543221               00  1455556554444333333322211111112   2222222


Q ss_pred             CchhhhhhhcCCceeEEEeccccccccC------------------C-----------HHHHHHHHHHHHhcccCCcEEE
Q 025059           93 ENFETQMQEKANQADLVCCFQHLQMCFE------------------T-----------EERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus        93 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~------------------~-----------~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      .-+      |.++.|++.+..++||+=.                  .           ..+...+|+.=++-|+|||.++
T Consensus       133 rLf------P~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mv  206 (359)
T d1m6ex_         133 RLF------PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMV  206 (359)
T ss_dssp             CCS------CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEE
T ss_pred             hcC------CCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence            222      6789999999999998511                  0           2577889999999999999999


Q ss_pred             EEEc
Q 025059          144 GITP  147 (258)
Q Consensus       144 ~~~~  147 (258)
                      ++..
T Consensus       207 l~~~  210 (359)
T d1m6ex_         207 LTIL  210 (359)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9843

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=95.46  E-value=0.012  Score=48.10  Aligned_cols=70  Identities=14%  Similarity=0.051  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      .+.+||||-||-|++...+...+..-+.++|+++.+++.-+.++...        .++|+.+....     .-..+|+++
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~~~~-----~~~~~Dll~   76 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEK-----TIPDHDILC   76 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGG-----GSCCCSEEE
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcCchh-----hcceeeeee
Confidence            46899999999999999998888866778999999999887776432        24676554332     234689998


Q ss_pred             ecc
Q 025059          111 CFQ  113 (258)
Q Consensus       111 ~~~  113 (258)
                      ..+
T Consensus        77 ggp   79 (327)
T d2c7pa1          77 AGF   79 (327)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            765

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.19  E-value=0.049  Score=40.05  Aligned_cols=98  Identities=14%  Similarity=0.087  Sum_probs=63.6

Q ss_pred             cCCCCEEEEEcCCCCccH-HHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 025059           29 SHPYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~-~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (258)
                      .+|+.+||=+|+|..+.+ ..+++. +...++++|.+++-++.+++..       ...++..+  +......... ....
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~g-------a~~~i~~~--~~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLG-------ADHVVDAR--RDPVKQVMELTRGRG  100 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTT-------CSEEEETT--SCHHHHHHHHTTTCC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcc-------cceeecCc--ccHHHHHHHhhCCCC
Confidence            568999999999875444 455443 6668999999998888877542       12333322  2222222211 2456


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+|+..-.-          ...++...++|++||.+++.
T Consensus       101 ~d~vid~~g~----------~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         101 VNVAMDFVGS----------QATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             EEEEEESSCC----------HHHHHHGGGGEEEEEEEEEC
T ss_pred             ceEEEEecCc----------chHHHHHHHHHhCCCEEEEE
Confidence            9998765421          23577788999999999876

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.75  E-value=0.024  Score=42.17  Aligned_cols=100  Identities=12%  Similarity=0.016  Sum_probs=58.4

Q ss_pred             cCCCCEEEEEcCCCCccH-HHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEE-cCCCCCchhhhhh-hcCC
Q 025059           29 SHPYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFE-ADPCAENFETQMQ-EKAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~-~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~-~~~~  104 (258)
                      .+++.+||=+|||..+.+ ...++. +..+|+++|.+++-++.|++.-...       ++. .|- +........ ....
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~-------~in~~~~-~~~~~~~~~~~~g~   98 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATE-------CISPKDS-TKPISEVLSEMTGN   98 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSE-------EECGGGC-SSCHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcE-------EECcccc-chHHHHHHHHhccc
Confidence            568999999999975443 333333 5569999999999999998764321       221 111 111111111 1356


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+-.-+-      .   ..+...+..+++++|.+++.
T Consensus        99 G~d~vi~~~g~------~---~~~~~a~~~~~~~~G~~v~v  130 (176)
T d1d1ta2          99 NVGYTFEVIGH------L---ETMIDALASCHMNYGTSVVV  130 (176)
T ss_dssp             CCCEEEECSCC------H---HHHHHHHTTSCTTTCEEEEC
T ss_pred             cceEEEEeCCc------h---HHHHHHHHHhhcCCeEEEEE
Confidence            78988654321      1   12233344555666888876

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.19  Score=39.31  Aligned_cols=84  Identities=10%  Similarity=-0.007  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcC
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~  103 (258)
                      ++..||=-|++.|.   .+..+++.+. +|+.+|.+++.++.+.+.+...+...++.++++|+.+..-.    .......
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            36789999988873   2344445566 89999999999999888887665444788899999874311    1122245


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      +..|+++.+...
T Consensus        88 g~iD~lVnnAg~   99 (257)
T d1xg5a_          88 SGVDICINNAGL   99 (257)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEecccc
Confidence            789998876544

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.72  E-value=0.048  Score=39.90  Aligned_cols=99  Identities=17%  Similarity=0.181  Sum_probs=62.1

Q ss_pred             hcCCCCEEEEEcCC-C-CccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh-h-c
Q 025059           28 YSHPYVTVCDLYCG-A-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-E-K  102 (258)
Q Consensus        28 ~~~~~~~VLDlGcG-~-G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~-~  102 (258)
                      -..|+.+||=+||+ . |..+..+++. +...++++|.++.-++.+++.-.      . ..+..+  +.++.+... . .
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga------~-~~i~~~--~~~~~~~~~~~~~   94 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA------D-YVINAS--MQDPLAEIRRITE   94 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC------S-EEEETT--TSCHHHHHHHHTT
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC------c-eeeccC--CcCHHHHHHHHhh
Confidence            45689999999973 2 3434444443 66699999999988888875421      1 223222  222222221 1 2


Q ss_pred             CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+.+|+|+..-+          -...++...++++|||.+++.
T Consensus        95 ~~~~d~vid~~g----------~~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          95 SKGVDAVIDLNN----------SEKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             TSCEEEEEESCC----------CHHHHTTGGGGEEEEEEEEEC
T ss_pred             cccchhhhcccc----------cchHHHhhhhhcccCCEEEEe
Confidence            457999976542          124566678899999999876

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.45  E-value=0.23  Score=34.48  Aligned_cols=95  Identities=9%  Similarity=-0.058  Sum_probs=58.7

Q ss_pred             EEEEEcCCCCccHHHHHH----cCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           34 TVCDLYCGAGVDVDKWET----ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        34 ~VLDlGcG~G~~~~~~~~----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      +|+=+|+|  .....+++    .+. .|+.+|.+++.++.+++.+       ....+++|..+.......  .-..+|.+
T Consensus         2 ~IvI~G~G--~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~--~i~~a~~v   69 (132)
T d1lssa_           2 YIIIAGIG--RVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDA--GIEDADMY   69 (132)
T ss_dssp             EEEEECCS--HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHT--TTTTCSEE
T ss_pred             EEEEECCC--HHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhc--Chhhhhhh
Confidence            56777765  34333332    344 8999999999988776543       456889999876654333  34678888


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      ++..      .+. ....+...+.+.+.+.-+ +....+
T Consensus        70 v~~t------~~d-~~N~~~~~~~k~~~~~~i-I~~~~~  100 (132)
T d1lssa_          70 IAVT------GKE-EVNLMSSLLAKSYGINKT-IARISE  100 (132)
T ss_dssp             EECC------SCH-HHHHHHHHHHHHTTCCCE-EEECSS
T ss_pred             cccC------CcH-HHHHHHHHHHHHcCCceE-EEEecC
Confidence            7643      222 334455566677777743 333333

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.30  E-value=0.035  Score=41.15  Aligned_cols=100  Identities=11%  Similarity=-0.027  Sum_probs=58.5

Q ss_pred             cCCCCEEEEEcCCCCccH-HHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhh-hhcCCc
Q 025059           29 SHPYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~-~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~  105 (258)
                      .+|+.+||=+|||..+.+ ..+++. +..+++++|.++.-++.|++.-.       ...+...-.+....... ....+.
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa-------~~~i~~~~~d~~~~~~~~~~~~~G   97 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA-------TECLNPKDYDKPIYEVICEKTNGG   97 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC-------SEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCC-------cEEEcCCCchhHHHHHHHHhcCCC
Confidence            568999999999975444 333333 66799999999999998875421       12222211111122111 113467


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcc-cCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLL-KPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~L-kpgG~~i~~  145 (258)
                      +|+|+-.-..          ...+.+....+ +++|.+++.
T Consensus        98 ~d~vid~~g~----------~~~~~~~~~~~~~~~G~~v~v  128 (174)
T d1p0fa2          98 VDYAVECAGR----------IETMMNALQSTYCGSGVTVVL  128 (174)
T ss_dssp             BSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CcEEEEcCCC----------chHHHHHHHHHHHhcCceEEE
Confidence            8988654321          23444455555 556888775

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=0.021  Score=46.65  Aligned_cols=75  Identities=16%  Similarity=0.137  Sum_probs=52.3

Q ss_pred             CCEEEEEcCCCCccHHHHHHcCCC--eEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           32 YVTVCDLYCGAGVDVDKWETALIA--NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        32 ~~~VLDlGcG~G~~~~~~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      +.+|+||.||.|++...+...+..  -+.++|+++.+++.-+.+++      ...+.+.|+.+..... +  +....|++
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~-~--~~~~~Dll   72 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEE-F--DRLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHH-H--HHHCCSEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhH-c--CCCCccEE
Confidence            478999999999998888666763  36799999998887776653      2356677876544322 2  22368999


Q ss_pred             Eecccc
Q 025059          110 CCFQHL  115 (258)
Q Consensus       110 ~~~~~l  115 (258)
                      +..+..
T Consensus        73 ~ggpPC   78 (343)
T d1g55a_          73 LMSPPC   78 (343)
T ss_dssp             EECCC-
T ss_pred             Eeeccc
Confidence            876543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.09  E-value=0.024  Score=41.90  Aligned_cols=98  Identities=15%  Similarity=0.165  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      ++.+|+=||+|. |..+...+..-..+|+.+|.+++.+++.+..+...     ++....+-  ..+.+.    -...|+|
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~-----~~~~~~~~--~~l~~~----~~~aDiv   99 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR-----VELLYSNS--AEIETA----VAEADLL   99 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG-----SEEEECCH--HHHHHH----HHTCSEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc-----ceeehhhh--hhHHHh----hccCcEE
Confidence            468999999996 44444444444459999999999999888776543     34433331  123222    2468999


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      +..-.+.    ..+...-+-+++.+.+|||.+++
T Consensus       100 I~aalip----G~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         100 IGAVLVP----GRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             EECCCCT----TSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             EEeeecC----CcccCeeecHHHHhhcCCCcEEE
Confidence            8765332    22223344567888999999875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.07  E-value=0.1  Score=37.99  Aligned_cols=97  Identities=16%  Similarity=0.106  Sum_probs=61.7

Q ss_pred             HhcCCCCEEEEEcCCC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           27 IYSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        27 ~~~~~~~~VLDlGcG~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      .-.+|+.+||=+|||. |..+.++++....+++++|.+++-++.+++.-.       ..++...  +...   .....+.
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGa-------d~~i~~~--~~~~---~~~~~~~   93 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA-------DEVVNSR--NADE---MAAHLKS   93 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC-------SEEEETT--CHHH---HHTTTTC
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCC-------cEEEECc--hhhH---HHHhcCC
Confidence            3467899999999985 556666666644478899999988887764321       1222221  1111   1113467


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+|+..-+-.          ..+....++++++|.+++.
T Consensus        94 ~D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2          94 FDFILNTVAAP----------HNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             EEEEEECCSSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred             Cceeeeeeecc----------hhHHHHHHHHhcCCEEEEe
Confidence            99987643221          2355677899999999876

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.15  Score=37.25  Aligned_cols=97  Identities=14%  Similarity=0.113  Sum_probs=64.4

Q ss_pred             cCCCCEEEEEcCCC--CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059           29 SHPYVTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~--G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (258)
                      ++|+.+||=.|+|.  |..+.++++....+++++|.|++.++.+++.-.       ...+  |..+.++.+.+.+  ...
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa-------~~vi--~~~~~d~~~~v~~~t~g~   96 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA-------WQVI--NYREEDLVERLKEITGGK   96 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC-------SEEE--ETTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC-------eEEE--ECCCCCHHHHHHHHhCCC
Confidence            45899999997665  556667766644599999999999888875421       1222  3333444443322  356


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+..-.-           ..+.....+|+++|.++..
T Consensus        97 g~d~v~d~~g~-----------~~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2          97 KVRVVYDSVGR-----------DTWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             CEEEEEECSCG-----------GGHHHHHHTEEEEEEEEEC
T ss_pred             CeEEEEeCccH-----------HHHHHHHHHHhcCCeeeec
Confidence            79998765421           2456778899999988765

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=93.69  E-value=1.3  Score=35.25  Aligned_cols=110  Identities=11%  Similarity=0.017  Sum_probs=72.8

Q ss_pred             CEEEEEcCCCCccHHHHHHc--CCCeEEEEecChhHHHHHHHHHHhcC--CCceeEEEEcCCCCCchhhhhhh---cCCc
Q 025059           33 VTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQE---KANQ  105 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~---~~~~  105 (258)
                      ..|+.||||-  ++..+...  ....++-+|. +++++.-++.++..+  ...+..++..|+.+. ....+..   ....
T Consensus        91 ~qvV~LGaGl--DTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~-~~~~L~~~g~d~~~  166 (297)
T d2uyoa1          91 RQFVILASGL--DSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQD-WPPALRSAGFDPSA  166 (297)
T ss_dssp             CEEEEETCTT--CCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSC-HHHHHHHTTCCTTS
T ss_pred             CeEEEeCccc--CChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccch-HHHHHHhcCCCCCC
Confidence            4566799876  44544322  2236777774 777777777776542  223668888888653 3233322   1244


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcC
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~  148 (258)
                      .-++++-.++.|  .+.+....+++.+.+...||+.+++...+
T Consensus       167 ptl~i~EGvl~Y--L~~~~~~~ll~~i~~~~~~GS~l~~d~~~  207 (297)
T d2uyoa1         167 RTAWLAEGLLMY--LPATAQDGLFTEIGGLSAVGSRIAVETSP  207 (297)
T ss_dssp             CEEEEECSCGGG--SCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CEEEEEcccccc--CCHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            556777777777  56888999999999999999999988544

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.60  E-value=0.25  Score=35.59  Aligned_cols=87  Identities=11%  Similarity=0.047  Sum_probs=56.6

Q ss_pred             EEEEEcCCC--CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 025059           34 TVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (258)
Q Consensus        34 ~VLDlGcG~--G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (258)
                      +|.=||+|.  +.++..+.+.+. +|++.|.+++.++.+++.-.       +.-...+     .+     .-...|+|+.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~-------~~~~~~~-----~~-----~~~~~DiIil   63 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL-------VDEAGQD-----LS-----LLQTAKIIFL   63 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTS-------CSEEESC-----GG-----GGTTCSEEEE
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhc-------cceeeee-----cc-----cccccccccc
Confidence            566788885  334555655566 89999999988887765321       1111111     11     1246798865


Q ss_pred             ccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .-       +......+++++...++++-+++-+
T Consensus        64 av-------p~~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          64 CT-------PIQLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             CS-------CHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             cC-------cHhhhhhhhhhhhhhcccccceeec
Confidence            32       4667889999999999998876544

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.06  E-value=0.44  Score=34.32  Aligned_cols=103  Identities=13%  Similarity=0.055  Sum_probs=63.1

Q ss_pred             EEEEEcCCC-Cc-cHHHHHHcCC-CeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEE
Q 025059           34 TVCDLYCGA-GV-DVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (258)
Q Consensus        34 ~VLDlGcG~-G~-~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (258)
                      +|+=||||. |. ++..+.+.+. .+++|+|.+++.++.|++.-.       +.....+...  .      .....|+|+
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~-------~~~~~~~~~~--~------~~~~~dlIi   67 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-------IDEGTTSIAK--V------EDFSPDFVM   67 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-------CSEEESCGGG--G------GGTCCSEEE
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc-------chhhhhhhhh--h------hcccccccc
Confidence            577799996 33 3444544554 489999999999998876521       1111111110  1      234679987


Q ss_pred             eccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCchHHHHHHHH
Q 025059          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (258)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~~~~~~~~  158 (258)
                      ..-       +.......+.++...++++..++-+.-....+.+.+.+
T Consensus        68 la~-------p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~  108 (171)
T d2g5ca2          68 LSS-------PVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN  108 (171)
T ss_dssp             ECS-------CHHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH
T ss_pred             ccC-------CchhhhhhhhhhhccccccccccccccccHHHHHHHHH
Confidence            543       45668889999999999887665443333444444443

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.96  E-value=0.32  Score=35.69  Aligned_cols=97  Identities=14%  Similarity=-0.031  Sum_probs=62.1

Q ss_pred             cCCCCEEEEEcCCC--CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh-hhhh-hcCC
Q 025059           29 SHPYVTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-TQMQ-EKAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGcG~--G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~-~~~~  104 (258)
                      ++|+.+||=.|++.  |..+.++++....++++++-+++.++.+++.-.      . ..+..+  +.... .... ....
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga------~-~vi~~~--~~~~~~~~~~~~~~~   97 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF------D-AAFNYK--TVNSLEEALKKASPD   97 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC------S-EEEETT--SCSCHHHHHHHHCTT
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhh------h-hhcccc--cccHHHHHHHHhhcC
Confidence            45899999888765  455566666655699999999888777665421      1 222222  12221 1111 1356


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+..-+           ...++...++|+|+|.++..
T Consensus        98 Gvd~v~D~vG-----------~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          98 GYDCYFDNVG-----------GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             CEEEEEESSC-----------HHHHHHHGGGEEEEEEEEEC
T ss_pred             CCceeEEecC-----------chhhhhhhhhccCCCeEEee
Confidence            7999976431           24678899999999999875

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.58  E-value=0.89  Score=36.82  Aligned_cols=133  Identities=14%  Similarity=0.112  Sum_probs=75.8

Q ss_pred             CcchHHhHHHHHHHHHHHHh----c--CCCCEEEEEcCCCCccHHHHHHcCCCeEEEEecChhHHHHHHHH-HHhc----
Q 025059            9 SELTHHRLYEFAKTALIKIY----S--HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDT-WENQ----   77 (258)
Q Consensus         9 ~~~~~~~~~~~~k~~li~~~----~--~~~~~VLDlGcG~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~-~~~~----   77 (258)
                      +++|...---|++...|+..    +  ++...|+-||||.=.....+..... .+..+|++-..+-..|.+ +...    
T Consensus        68 ~~~PlINrGy~~Rt~~id~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~p~vi~~K~~~i~~~~~l~  146 (328)
T d1rjda_          68 SSFPVMNYGTYLRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDYNESVELKNSILRESEILR  146 (328)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEECHHHHHHHHHHHHHSHHHH
T ss_pred             ccCCchhhhHHHHHHHHHHHHHHHHHHCCCcEEEEeCCccchHHHHhhccCC-CcEEEECCcHHHHHHHHHHHHhchhhh
Confidence            44565543356665544433    2  2556799999998655555543332 444555443333333332 2110    


Q ss_pred             ----------------CCCceeEEEEcCCCCCchhhhhhh---cCCceeEEEeccccccccCCHHHHHHHHHHHHhcccC
Q 025059           78 ----------------RKNFIAEFFEADPCAENFETQMQE---KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP  138 (258)
Q Consensus        78 ----------------~~~~~~~~~~~d~~~~~~~~~~~~---~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp  138 (258)
                                      -...+..++.+|+.+......+..   .....-++++-.++.|  .+.+...++++.+.+....
T Consensus       147 ~~l~~~~~~~~~~~~~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Y--l~~~~~~~li~~~~~~f~~  224 (328)
T d1rjda_         147 ISLGLSKEDTAKSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCY--MHNNESQLLINTIMSKFSH  224 (328)
T ss_dssp             HHHTCCSSCCCCTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGG--SCHHHHHHHHHHHHHHCSS
T ss_pred             hhccccccccccccccCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhc--CCHHHHHHHHHHHHHhCCC
Confidence                            001256888899877543222211   2344557888888888  5678899999999988866


Q ss_pred             CcEEEEE
Q 025059          139 GGYFLGI  145 (258)
Q Consensus       139 gG~~i~~  145 (258)
                      +. +++-
T Consensus       225 ~~-~i~Y  230 (328)
T d1rjda_         225 GL-WISY  230 (328)
T ss_dssp             EE-EEEE
T ss_pred             ce-EEEe
Confidence            54 4443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.53  E-value=0.35  Score=33.29  Aligned_cols=95  Identities=9%  Similarity=-0.037  Sum_probs=61.3

Q ss_pred             CCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEeccccccc
Q 025059           40 CGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC  118 (258)
Q Consensus        40 cG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~  118 (258)
                      ||.|.....+++. ....++.+|.++...+.++..        .+.++.+|..+.......  .-.+.+.+++..     
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~--------~~~~i~Gd~~~~~~L~~a--~i~~A~~vi~~~-----   70 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS--------GANFVHGDPTRVSDLEKA--NVRGARAVIVNL-----   70 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT--------TCEEEESCTTSHHHHHHT--TCTTCSEEEECC-----
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc--------CccccccccCCHHHHHHh--hhhcCcEEEEec-----
Confidence            4666677777665 223688999999987765432        567889998775543332  346778877643     


Q ss_pred             cCCHHHHHHHHHHHHhcccCCcEEEEEEcCchH
Q 025059          119 FETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (258)
Q Consensus       119 ~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~~~  151 (258)
                       . .......+....+.+.|...++..+.+...
T Consensus        71 -~-~d~~n~~~~~~~r~~~~~~~iia~~~~~~~  101 (129)
T d2fy8a1          71 -E-SDSETIHCILGIRKIDESVRIIAEAERYEN  101 (129)
T ss_dssp             -S-SHHHHHHHHHHHHHHCSSSCEEEECSSGGG
T ss_pred             -c-chhhhHHHHHHHHHHCCCceEEEEEcCHHH
Confidence             2 233344455566778999888777666543

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=92.29  E-value=0.17  Score=41.83  Aligned_cols=59  Identities=5%  Similarity=-0.050  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHc--------CCCeEEEEecChhHHHHHHHHHHh
Q 025059           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA--------LIANYIGIDVATSGIGEARDTWEN   76 (258)
Q Consensus        18 ~~~k~~li~~~~~~~~~VLDlGcG~G~~~~~~~~~--------~~~~v~gvD~s~~~l~~a~~~~~~   76 (258)
                      +|+...+.....++..+|+|+|+|+|.++..++..        ....++-+++|+...+..++++..
T Consensus        66 ~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~  132 (365)
T d1zkda1          66 LWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  132 (365)
T ss_dssp             HHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence            55555554444455678999999999988776553        123689999999988877776654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.11  E-value=0.27  Score=35.84  Aligned_cols=100  Identities=12%  Similarity=-0.022  Sum_probs=57.9

Q ss_pred             cCCCCEEEEEcCCCCccH-HHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhh-hhcCCc
Q 025059           29 SHPYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQ  105 (258)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~-~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~  105 (258)
                      .+|+.+||=+|+|.++.+ ..+++. +..+++++|.+++-++.+++.-..      ..+...+-. ....... ....+.
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~------~~i~~~~~~-~~~~~~~~~~~~~G   98 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT------ECVNPQDYK-KPIQEVLTEMSNGG   98 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS------EEECGGGCS-SCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe------eEEecCCch-hHHHHHHHHHhcCC
Confidence            568999999999865433 333333 567999999999998888665321      111111211 1121111 114568


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~~i~~  145 (258)
                      +|+|+-..+..          ..+......+++| |.+++.
T Consensus        99 ~D~vid~~G~~----------~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          99 VDFSFEVIGRL----------DTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             BSEEEECSCCH----------HHHHHHHHHBCTTTCEEEEC
T ss_pred             CCEEEecCCch----------hHHHHHHHHHhcCCcceEEe
Confidence            99997655322          3445555667775 555544

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.10  E-value=0.53  Score=33.98  Aligned_cols=101  Identities=10%  Similarity=0.023  Sum_probs=61.5

Q ss_pred             hcCCCCEEEEEcCCCC-ccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhh-hcCC
Q 025059           28 YSHPYVTVCDLYCGAG-VDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKAN  104 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G-~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~  104 (258)
                      -++|+.+||=.|||.. ..+..+++. +...++++|.++.-++.+++--.       ...+..+-........+. ...+
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa-------~~~i~~~~~~~~~~~~~~~~~~~   97 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA-------TECINPQDFSKPIQEVLIEMTDG   97 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC-------SEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC-------cEEEeCCchhhHHHHHHHHHcCC
Confidence            3679999999999843 333334443 66789999999999888875421       122222111122222211 1346


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+-.-.-          ..+++....++++||.+++.
T Consensus        98 g~D~vid~~G~----------~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          98 GVDYSFECIGN----------VKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             CBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEE
T ss_pred             CCcEeeecCCC----------HHHHHHHHHhhcCCceeEEE
Confidence            79999765421          24667788899999877654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.82  E-value=0.52  Score=33.33  Aligned_cols=102  Identities=6%  Similarity=-0.096  Sum_probs=61.0

Q ss_pred             CEEEEEcCCCCccHHHHHHc---CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEE
Q 025059           33 VTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (258)
Q Consensus        33 ~~VLDlGcG~G~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (258)
                      .+|+=+|+|  .....+++.   ....++.+|.+++......+.....    .+.++.+|..+.......  .-...|.|
T Consensus         4 nHiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~----~~~vi~Gd~~d~~~L~~a--~i~~a~~v   75 (153)
T d1id1a_           4 DHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD----NADVIPGDSNDSSVLKKA--GIDRCRAI   75 (153)
T ss_dssp             SCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT----TCEEEESCTTSHHHHHHH--TTTTCSEE
T ss_pred             CEEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcC----CcEEEEccCcchHHHHHh--ccccCCEE
Confidence            346666665  344444332   3338999999987655444443333    578899998776554333  34678888


Q ss_pred             EeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ++..      .+.. ....+....+-+.|...++....+.
T Consensus        76 i~~~------~~d~-~n~~~~~~~r~~~~~~~iia~~~~~  108 (153)
T d1id1a_          76 LALS------DNDA-DNAFVVLSAKDMSSDVKTVLAVSDS  108 (153)
T ss_dssp             EECS------SCHH-HHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred             EEcc------ccHH-HHHHHHHHHHHhCCCCceEEEEcCH
Confidence            7643      2222 3344455666778888777765554

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.73  Score=35.54  Aligned_cols=83  Identities=10%  Similarity=0.048  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCCCC---ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhcC
Q 025059           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (258)
                      .|..+|=-|++.|   ..+..+++.+. +|+.+|.+++.++...+.+...+  .++..+.+|+.+..-..    ......
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            3678888888876   23344455566 89999999999998888887653  37889999998753211    122346


Q ss_pred             CceeEEEeccccc
Q 025059          104 NQADLVCCFQHLQ  116 (258)
Q Consensus       104 ~~fD~V~~~~~l~  116 (258)
                      +..|+++.+.+..
T Consensus        83 g~idilinnag~~   95 (244)
T d1yb1a_          83 GDVSILVNNAGVV   95 (244)
T ss_dssp             CCCSEEEECCCCC
T ss_pred             CCCceeEeecccc
Confidence            7899988776554

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.65  E-value=0.11  Score=38.21  Aligned_cols=97  Identities=16%  Similarity=0.113  Sum_probs=60.4

Q ss_pred             cCCCCEEEEEcC-C-CCccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 025059           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (258)
Q Consensus        29 ~~~~~~VLDlGc-G-~G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (258)
                      ++++.+||=.|. | .|..+.++++....++++++-+++..+.+++.    +.  . ..+  |-.+..+.+.+.+  ...
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~----Ga--~-~vi--~~~~~~~~~~v~~~t~~~   93 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GV--E-YVG--DSRSVDFADEILELTDGY   93 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CC--S-EEE--ETTCSTHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccc----cc--c-ccc--cCCccCHHHHHHHHhCCC
Confidence            458899998773 3 45666777666445888888888777766542    11  1 222  2223334333322  246


Q ss_pred             ceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+|+|+..-+           ...++.+.++|+++|.++..
T Consensus        94 g~d~v~d~~g-----------~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          94 GVDVVLNSLA-----------GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             CEEEEEECCC-----------THHHHHHHHTEEEEEEEEEC
T ss_pred             CEEEEEeccc-----------chHHHHHHHHhcCCCEEEEE
Confidence            7999987542           12456677899999999875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.19  E-value=0.31  Score=33.66  Aligned_cols=97  Identities=9%  Similarity=-0.023  Sum_probs=53.0

Q ss_pred             EEEEcCCC-CccHH-HHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCceeEEEec
Q 025059           35 VCDLYCGA-GVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (258)
Q Consensus        35 VLDlGcG~-G~~~~-~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~  112 (258)
                      ++=+|+|. |..+. .+...+. .|+.+|.+++.++.++..        ....+.+|..+.......  .-...|.|++.
T Consensus         3 ~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~--------~~~~~~gd~~~~~~l~~a--~i~~a~~vi~~   71 (134)
T d2hmva1           3 FAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASY--------ATHAVIANATEENELLSL--GIRNFEYVIVA   71 (134)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTT--------CSEEEECCTTCTTHHHHH--TGGGCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHh--------CCcceeeecccchhhhcc--CCccccEEEEE
Confidence            34456653 32222 2223355 899999999998876432        335677898876654332  23467877664


Q ss_pred             cccccccCCHHHHHHHHHHHHhcccCCcEEEEEEcCc
Q 025059          113 QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (258)
Q Consensus       113 ~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~~~~  149 (258)
                      ..      +.... ..+..+.+.+.+...++....+.
T Consensus        72 ~~------~~~~~-~~~~~~~~~~~~~~~iiar~~~~  101 (134)
T d2hmva1          72 IG------ANIQA-STLTTLLLKELDIPNIWVKAQNY  101 (134)
T ss_dssp             CC------SCHHH-HHHHHHHHHHTTCSEEEEECCSH
T ss_pred             cC------chHHh-HHHHHHHHHHcCCCcEEeecccH
Confidence            31      12222 33333444455666665554443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=90.91  E-value=0.73  Score=35.80  Aligned_cols=83  Identities=10%  Similarity=-0.033  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCCCC---ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh-----hhhhhc
Q 025059           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-----TQMQEK  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~~~  102 (258)
                      ++.+||=.|+..|   ..+..+++.+. +|+.+|.+++.++.+.+.+...+.  .+.++.+|+.+..--     ......
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHHh
Confidence            5788999998776   23445555676 999999999999988887766542  678899999774421     111222


Q ss_pred             CCceeEEEeccccc
Q 025059          103 ANQADLVCCFQHLQ  116 (258)
Q Consensus       103 ~~~fD~V~~~~~l~  116 (258)
                      .+..|+++++...+
T Consensus        82 ~g~idilinnag~~   95 (258)
T d1ae1a_          82 DGKLNILVNNAGVV   95 (258)
T ss_dssp             TSCCCEEEECCCCC
T ss_pred             CCCcEEEecccccc
Confidence            46789988765543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.59  E-value=0.66  Score=33.44  Aligned_cols=46  Identities=15%  Similarity=-0.008  Sum_probs=34.7

Q ss_pred             hcCCCCEEEEEcCCCCccHHHH-HHc-CCCeEEEEecChhHHHHHHHH
Q 025059           28 YSHPYVTVCDLYCGAGVDVDKW-ETA-LIANYIGIDVATSGIGEARDT   73 (258)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~~-~~~-~~~~v~gvD~s~~~l~~a~~~   73 (258)
                      -.+|+.+||=+|||.++.+... +.. +...++++|.+++-++.|++.
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            3568999999999986554333 333 566899999999998888754

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=90.57  E-value=1.5  Score=33.93  Aligned_cols=82  Identities=9%  Similarity=0.016  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcC
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~  103 (258)
                      ++.++|=-|.+.|.   .+..+++.+. +|+.+|.+++.++.+.+.++..+  .++..+.+|+.+..-.    +......
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            46788888877662   3345555565 89999999999999888876653  3788999999774311    1122234


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      +..|+++.+.+.
T Consensus        81 g~iDilVnnaG~   92 (260)
T d1zema1          81 GKIDFLFNNAGY   92 (260)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCeehhhhcc
Confidence            789998876543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.10  E-value=1.3  Score=34.31  Aligned_cols=84  Identities=13%  Similarity=0.021  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhcC
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (258)
                      ++.++|=-|++.|.   .+..+++.+. +|+.+|.+++.++.+.+.......+.++..+++|+.+..-..    ......
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            36678888887762   3455555566 899999999999888777765544447888999997743211    112234


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      +..|+++.+.+.
T Consensus        82 G~iDiLVnnAG~   93 (258)
T d1iy8a_          82 GRIDGFFNNAGI   93 (258)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            789999887653

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.04  E-value=0.24  Score=36.16  Aligned_cols=94  Identities=15%  Similarity=0.072  Sum_probs=58.1

Q ss_pred             hcCCCCEEEEEcC-CC-CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 025059           28 YSHPYVTVCDLYC-GA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (258)
Q Consensus        28 ~~~~~~~VLDlGc-G~-G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (258)
                      .++|+.+||=.|. |. |..+.++++....++++++.+++.++.+++.-.      ...+   |..+  ...... ....
T Consensus        24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa------~~~i---~~~~--~~~~~~-~~~g   91 (171)
T d1iz0a2          24 QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGA------EEAA---TYAE--VPERAK-AWGG   91 (171)
T ss_dssp             TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTC------SEEE---EGGG--HHHHHH-HTTS
T ss_pred             CCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccccc------ceee---ehhh--hhhhhh-cccc
Confidence            3569999999884 43 566666666644589999999888877765311      1111   1111  111111 3467


Q ss_pred             eeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +|+|+-..+            ..+....++|+|+|.++..
T Consensus        92 ~D~v~d~~G------------~~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          92 LDLVLEVRG------------KEVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             EEEEEECSC------------TTHHHHHTTEEEEEEEEEC
T ss_pred             ccccccccc------------hhHHHHHHHHhcCCcEEEE
Confidence            999975321            1245677899999998865

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.02  E-value=0.76  Score=35.35  Aligned_cols=78  Identities=10%  Similarity=-0.028  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCCCC---ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .|.++|=-|++.|   ..+..+++.+. +|+.+|.+++.++.+.+...      .+..+++|+.+..--+...+.-++.|
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~------~~~~~~~Dv~d~~~v~~~~~~~g~iD   78 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP------GIEPVCVDLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC------CCeEEEEeCCCHHHHHHHHHHhCCce
Confidence            4788999998877   33355555566 89999999988877665543      46778899977543222333457899


Q ss_pred             EEEecccc
Q 025059          108 LVCCFQHL  115 (258)
Q Consensus       108 ~V~~~~~l  115 (258)
                      +++.+.+.
T Consensus        79 ilVnnAg~   86 (244)
T d1pr9a_          79 LLVNNAAV   86 (244)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            98876544

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.90  E-value=2  Score=33.27  Aligned_cols=111  Identities=12%  Similarity=0.054  Sum_probs=70.2

Q ss_pred             CCEEEEE-cCCCCccH----HHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch----hhhhhhc
Q 025059           32 YVTVCDL-YCGAGVDV----DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF----ETQMQEK  102 (258)
Q Consensus        32 ~~~VLDl-GcG~G~~~----~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~  102 (258)
                      |.+|.=| |++.| ..    ..+++.+...|+.++.+++.++.+.+.++..+.  ++.++.+|+.+..-    ...+...
T Consensus         2 g~rVAlVTGas~G-IG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~   78 (275)
T d1wmaa1           2 GIHVALVTGGNKG-IGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKE   78 (275)
T ss_dssp             CCCEEEESSCSSH-HHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCH-HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHh
Confidence            4556334 54444 33    334444445999999999999998888876533  68899999977431    1122234


Q ss_pred             CCceeEEEeccccccc--cCC--HHHH-----------HHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQHLQMC--FET--EERA-----------RRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~--~~~--~~~~-----------~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+..|+++.+.++...  +..  .++.           -.+.+.+...|+++|.++.+
T Consensus        79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni  136 (275)
T d1wmaa1          79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  136 (275)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            5789999988765321  111  1122           24566778888999987765

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.77  E-value=1.5  Score=31.92  Aligned_cols=98  Identities=10%  Similarity=-0.079  Sum_probs=60.2

Q ss_pred             cCCC--CEEEEEc--CCCCccHHHHHHc-CCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhh-c
Q 025059           29 SHPY--VTVCDLY--CGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-K  102 (258)
Q Consensus        29 ~~~~--~~VLDlG--cG~G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~  102 (258)
                      .+++  .+||=.|  .|-|..+.++++. +...+++++.+++......+.+..      ...+  |..+..+.+.+.. .
T Consensus        26 ~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga------d~vi--~~~~~~~~~~~~~~~   97 (187)
T d1vj1a2          26 ISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF------DAAV--NYKTGNVAEQLREAC   97 (187)
T ss_dssp             CCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC------SEEE--ETTSSCHHHHHHHHC
T ss_pred             CCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc------eEEe--eccchhHHHHHHHHh
Confidence            3455  6799877  3457888888876 555788888887665544333211      1222  2233344433221 3


Q ss_pred             CCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      +..+|+|+-.-.           ...+....++|+++|.++..
T Consensus        98 ~~GvDvv~D~vG-----------g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          98 PGGVDVYFDNVG-----------GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             TTCEEEEEESSC-----------HHHHHHHHTTEEEEEEEEEC
T ss_pred             ccCceEEEecCC-----------chhHHHHhhhccccccEEEe
Confidence            467999965431           23577889999999999865

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=88.52  E-value=0.1  Score=38.88  Aligned_cols=106  Identities=10%  Similarity=0.040  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCCCCc-cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEE-cCCC-------C------Cch
Q 025059           31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFE-ADPC-------A------ENF   95 (258)
Q Consensus        31 ~~~~VLDlGcG~G~-~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~d~~-------~------~~~   95 (258)
                      |+.+||=||+|.-+ .+...+..-.++|+.+|+++..+++.++.....-   .+.... .+..       .      ...
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i---~~~~~~~~~~~~~~gyA~~~s~~~~~~~  104 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFI---TVDDEAMKTAETAGGYAKEMGEEFRKKQ  104 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEEC---CC-----------------------CCH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceE---EEeccccccccccccchhhcCHHHHHHH
Confidence            56899999999754 3344444444599999999999888876543210   000000 0000       0      000


Q ss_pred             hhhhhhcCCceeEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEE
Q 025059           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (258)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i  143 (258)
                      .+.+.+.-...|+|+..-.+..    .....-+-+++.+.||||.+++
T Consensus       105 ~~~l~~~l~~aDlVI~talipG----~~aP~lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         105 AEAVLKELVKTDIAITTALIPG----KPAPVLITEEMVTKMKPGSVII  148 (183)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTT----SCCCCCSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHHHHhhhhheeeeecCC----cccceeehHHHHHhcCCCcEEE
Confidence            1111112346899987653322    2222334567888999999875

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.36  E-value=1.1  Score=34.57  Aligned_cols=85  Identities=7%  Similarity=-0.041  Sum_probs=57.2

Q ss_pred             CCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcCC
Q 025059           32 YVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKAN  104 (258)
Q Consensus        32 ~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~~  104 (258)
                      |.++|=-|++.|.   .+..+++.+. +|+.+|.+++.++.+.+.+.....+.++.++.+|+.+..-.    +......+
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            6677888877662   2233444465 89999999999988887776543344789999999874321    11222347


Q ss_pred             ceeEEEecccccc
Q 025059          105 QADLVCCFQHLQM  117 (258)
Q Consensus       105 ~fD~V~~~~~l~~  117 (258)
                      ..|+++.+.....
T Consensus        82 ~iDilVnnAg~~~   94 (254)
T d2gdza1          82 RLDILVNNAGVNN   94 (254)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CcCeecccccccc
Confidence            8999988776543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=87.24  E-value=0.93  Score=35.29  Aligned_cols=81  Identities=9%  Similarity=0.002  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcC
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~  103 (258)
                      ++.++|=-|++.|.   .+..+++.+. +|+.+|.+++.++.+.+.+...+   .+.++++|+.+..--    +......
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCC---ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46788888977762   2234444465 89999999999888777765432   577889999764311    1112234


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      +..|+++.+.+.
T Consensus        81 g~iD~lVnnAG~   92 (268)
T d2bgka1          81 GKLDIMFGNVGV   92 (268)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCcceecccccc
Confidence            789999876654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.45  E-value=1.4  Score=33.98  Aligned_cols=81  Identities=9%  Similarity=0.048  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCCCccHHH----HHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhc
Q 025059           31 PYVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEK  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~----~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~  102 (258)
                      .+..+|=-|.+.| ....    ++..+. +|+.+|.+++.++.+.+.++..+  .++.++++|+.+..-.    ......
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~   84 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTE   84 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHh
Confidence            5677888887665 3333    333354 89999999999998888876653  3788999999874321    112234


Q ss_pred             CCceeEEEecccc
Q 025059          103 ANQADLVCCFQHL  115 (258)
Q Consensus       103 ~~~fD~V~~~~~l  115 (258)
                      .+..|+++.+.+.
T Consensus        85 ~g~iDilvnnag~   97 (251)
T d2c07a1          85 HKNVDILVNNAGI   97 (251)
T ss_dssp             CSCCCEEEECCCC
T ss_pred             cCCceeeeecccc
Confidence            5789998876544

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=85.98  E-value=2.6  Score=32.44  Aligned_cols=82  Identities=9%  Similarity=0.075  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhh----hhhhc-
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK-  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~-  102 (258)
                      ++.++|=-|++.|.   .+..+++.+. +|+.+|.+++.++.+.+.+...+  .++.++.+|+.+..-..    ..... 
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            57888888877662   2445555566 89999999999998888876653  37888999997643211    11122 


Q ss_pred             CCceeEEEecccc
Q 025059          103 ANQADLVCCFQHL  115 (258)
Q Consensus       103 ~~~fD~V~~~~~l  115 (258)
                      .+..|+++.+.+.
T Consensus        84 ~~~idilvnnAG~   96 (259)
T d2ae2a_          84 HGKLNILVNNAGI   96 (259)
T ss_dssp             TTCCCEEEECCCC
T ss_pred             CCCceEEEECCce
Confidence            3479999887654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.56  E-value=0.65  Score=34.00  Aligned_cols=98  Identities=12%  Similarity=-0.114  Sum_probs=60.4

Q ss_pred             cCCCCEEEEEcCCC--CccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCce
Q 025059           29 SHPYVTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (258)
Q Consensus        29 ~~~~~~VLDlGcG~--G~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (258)
                      .+++.+||=-|.+.  |..+.++++....+++++.-|++-.+.+++.-...    -+.  ..+......   ..-..+.+
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~----vi~--~~~~~~~~~---~~~~~~gv   99 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE----VLA--REDVMAERI---RPLDKQRW   99 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE----EEE--CC------------CCSCCE
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce----eee--cchhHHHHH---HHhhccCc
Confidence            34688899988655  45666666665558999999999888887542221    111  111101111   01135689


Q ss_pred             eEEEeccccccccCCHHHHHHHHHHHHhcccCCcEEEEEE
Q 025059          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (258)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~~i~~~  146 (258)
                      |+|+-.-.-           ..+....++|+|||.++...
T Consensus       100 D~vid~vgg-----------~~~~~~l~~l~~~Griv~~G  128 (176)
T d1xa0a2         100 AAAVDPVGG-----------RTLATVLSRMRYGGAVAVSG  128 (176)
T ss_dssp             EEEEECSTT-----------TTHHHHHHTEEEEEEEEECS
T ss_pred             CEEEEcCCc-----------hhHHHHHHHhCCCceEEEee
Confidence            999765421           34777888999999998773

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=85.45  E-value=4.7  Score=30.93  Aligned_cols=112  Identities=13%  Similarity=-0.005  Sum_probs=68.6

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecC-hhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhc
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVA-TSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEK  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~  102 (258)
                      +|.++|=-|++.|.   .+..++..+. +|+.+|.+ ++.++.+.+.+...+  .++.++++|+.+..-.    +.....
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~   93 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI   93 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHHH
Confidence            46788888887762   3455555566 89999987 456666666665543  2788999999774311    112223


Q ss_pred             CCceeEEEeccccccc----cCCHHH-----------HHHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQHLQMC----FETEER-----------ARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~----~~~~~~-----------~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+..|+++.+......    -.+.+.           .-.+.+.+...|+.+|..++.
T Consensus        94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i  151 (272)
T d1g0oa_          94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM  151 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence            4788998876543211    011222           233456677777887776665

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=85.10  E-value=2.4  Score=32.51  Aligned_cols=112  Identities=11%  Similarity=-0.043  Sum_probs=67.2

Q ss_pred             CCCEEEEEcCCCC---ccHHHHHHcCCCeEEE-EecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCch----hhhhhhc
Q 025059           31 PYVTVCDLYCGAG---VDVDKWETALIANYIG-IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF----ETQMQEK  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~~~~~~~~~v~g-vD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~  102 (258)
                      .|.+||=-|.+.|   ..+..+++.+. +|+. .+.++..++.+.+.+...+  .++.++.+|+.+..-    .......
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHH
Confidence            3678887776555   34455555566 6665 4567777788777776653  278899999976321    1112224


Q ss_pred             CCceeEEEecccccccc----CCHHH-----------HHHHHHHHHhcccCCcEEEEE
Q 025059          103 ANQADLVCCFQHLQMCF----ETEER-----------ARRLLQNVSSLLKPGGYFLGI  145 (258)
Q Consensus       103 ~~~fD~V~~~~~l~~~~----~~~~~-----------~~~~l~~i~~~LkpgG~~i~~  145 (258)
                      .+..|+++.+.+....-    .+.+.           .-.+.+.+...|+.+|..++.
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii  139 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT  139 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence            57899998876553211    11222           234455666667777776655

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=84.62  E-value=2.8  Score=32.12  Aligned_cols=81  Identities=7%  Similarity=-0.061  Sum_probs=54.1

Q ss_pred             CCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcCC
Q 025059           32 YVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKAN  104 (258)
Q Consensus        32 ~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~~  104 (258)
                      +..+|=-|++.|.   .+..+++.+. +|+.+|.+++.++.+.+.++..+  .++.++.+|+.+..-.    .......+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            3445666766552   2344445565 89999999999998888776653  3788999999774321    11223457


Q ss_pred             ceeEEEecccc
Q 025059          105 QADLVCCFQHL  115 (258)
Q Consensus       105 ~fD~V~~~~~l  115 (258)
                      +.|+++.+.+.
T Consensus        79 ~iDilVnnAG~   89 (257)
T d2rhca1          79 PVDVLVNNAGR   89 (257)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEecccc
Confidence            89998876544

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=84.04  E-value=1.7  Score=33.56  Aligned_cols=81  Identities=15%  Similarity=-0.037  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCCCccHH----HHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhc
Q 025059           31 PYVTVCDLYCGAGVDVD----KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEK  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G~~~~----~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~  102 (258)
                      +|.++|=-|.+.| ...    .++..+. +|+.+|.+++.++.+.+.++..+  .++.++++|+.+..-.    ......
T Consensus        10 ~gK~alITGas~G-IG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~   85 (255)
T d1fmca_          10 DGKCAIITGAGAG-IGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            5778887776665 333    3333455 89999999999998888777653  2788899999874321    111223


Q ss_pred             CCceeEEEecccc
Q 025059          103 ANQADLVCCFQHL  115 (258)
Q Consensus       103 ~~~fD~V~~~~~l  115 (258)
                      .+..|+++.+.+.
T Consensus        86 ~g~iDilvnnAG~   98 (255)
T d1fmca_          86 LGKVDILVNNAGG   98 (255)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             cCCCCEeeeCCcC
Confidence            4789998887654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.81  E-value=2  Score=32.71  Aligned_cols=78  Identities=12%  Similarity=0.010  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhhhhhcCCcee
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (258)
                      .|.++|=-|++.|.   .+..+++.+. +|+.+|.+++.++...+...      .+..+++|+.+..--+...+.-++.|
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~------~~~~~~~Dv~~~~~v~~~~~~~g~iD   76 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECP------GIEPVCVDLGDWDATEKALGGIGPVD   76 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC------CCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence            46788888877662   2344455565 89999999888776655432      46778899977543233333457899


Q ss_pred             EEEecccc
Q 025059          108 LVCCFQHL  115 (258)
Q Consensus       108 ~V~~~~~l  115 (258)
                      +++.+.+.
T Consensus        77 ilVnnAg~   84 (242)
T d1cyda_          77 LLVNNAAL   84 (242)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            98876543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.36  E-value=2  Score=33.35  Aligned_cols=84  Identities=12%  Similarity=-0.019  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCCC---ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCC-CceeEEEEcCCCCCchh----hhhhhc
Q 025059           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-NFIAEFFEADPCAENFE----TQMQEK  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~----~~~~~~  102 (258)
                      ++.++|=-|++.|   ..+..+++.+. +|+.+|.+++.++.+.+.+...+. ..++..+.+|+.+..-.    ......
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            3677888887766   23345555566 899999999999998888765432 23688999999774321    111223


Q ss_pred             CCceeEEEecccc
Q 025059          103 ANQADLVCCFQHL  115 (258)
Q Consensus       103 ~~~fD~V~~~~~l  115 (258)
                      .+..|+++.+.+.
T Consensus        83 ~g~iDilvnnAG~   95 (272)
T d1xkqa_          83 FGKIDVLVNNAGA   95 (272)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCceEEEeCCcc
Confidence            4789998876543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=82.91  E-value=2.7  Score=32.78  Aligned_cols=83  Identities=7%  Similarity=-0.059  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCCC---ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcC
Q 025059           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~  103 (258)
                      +|.++|=-|++.|   ..+..++..+. +|+.+|.++..++.+.+.+.... +.++.++.+|+.+..-.    .......
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhhc
Confidence            3578888888776   33444455565 99999999998887776654321 22678899998764321    1122346


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      +..|+++...+.
T Consensus       102 g~iDilvnnAg~  113 (294)
T d1w6ua_         102 GHPNIVINNAAG  113 (294)
T ss_dssp             CSCSEEEECCCC
T ss_pred             cccchhhhhhhh
Confidence            889998876544

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.37  E-value=2.5  Score=32.50  Aligned_cols=82  Identities=11%  Similarity=0.013  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchhhh----hhh-c
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQE-K  102 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~-~  102 (258)
                      ++.++|=-|++.|.   .+..+++.+. +|+.+|.+++.++.+.+.+....  .++..+.+|+.+..-...    ... .
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            57888888887763   3445555566 89999999999998888776653  278899999976432111    111 2


Q ss_pred             CCceeEEEecccc
Q 025059          103 ANQADLVCCFQHL  115 (258)
Q Consensus       103 ~~~fD~V~~~~~l  115 (258)
                      .+..|+++.+.+.
T Consensus        84 ~g~idilvnnAG~   96 (259)
T d1xq1a_          84 GGKLDILINNLGA   96 (259)
T ss_dssp             TTCCSEEEEECCC
T ss_pred             CCCcccccccccc
Confidence            4689999887654

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.35  E-value=2.4  Score=32.45  Aligned_cols=79  Identities=6%  Similarity=-0.120  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCCCC---ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcC
Q 025059           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~  103 (258)
                      .+.++|=-|++.|   ..+..+++.+. +|+.+|.+++.++.+.+.+..     ++.++++|+.+..--    .......
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPAQWKAAVDTAVTAF   78 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhC-----cceEEEeecCCHHHHHHHHHHHHHHh
Confidence            3677888888776   23345555566 899999999988877666543     578899999774321    1122234


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      +..|+++.+.+.
T Consensus        79 g~idilinnAG~   90 (244)
T d1nffa_          79 GGLHVLVNNAGI   90 (244)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCeEEEECCcc
Confidence            678998876654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=81.16  E-value=4.2  Score=31.02  Aligned_cols=78  Identities=9%  Similarity=-0.054  Sum_probs=51.6

Q ss_pred             EEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcCCcee
Q 025059           35 VCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKANQAD  107 (258)
Q Consensus        35 VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~~~fD  107 (258)
                      +|=-|++.|.   .+..+++.+. +|+.+|.+++.++.+.+.+...+  .++..+++|+.+..--    +...+..++.|
T Consensus         4 alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence            4556766552   2234444465 89999999999998888776553  3788899999774321    11223457899


Q ss_pred             EEEecccc
Q 025059          108 LVCCFQHL  115 (258)
Q Consensus       108 ~V~~~~~l  115 (258)
                      +++.+.+.
T Consensus        81 ilVnnAG~   88 (255)
T d1gega_          81 VIVNNAGV   88 (255)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99876543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=81.03  E-value=3.6  Score=31.27  Aligned_cols=79  Identities=8%  Similarity=-0.007  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCCCC---ccHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcC
Q 025059           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~  103 (258)
                      ++.++|=-|.+.|   ..+..+++.+. +|+.+|.+++.++...+.+..     +...+.+|+.+..-.    .......
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGA-----NGKGLMLNVTDPASIESVLEKIRAEF   76 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCC-----CCcEEEEEecCHHHhhhhhhhhhccc
Confidence            3567777787766   23344445566 899999999998887776643     567889999764311    1222345


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      ++.|+++.+.+.
T Consensus        77 g~iDilVnnAg~   88 (243)
T d1q7ba_          77 GEVDILVNNAGI   88 (243)
T ss_dssp             CSCSEEEECCCC
T ss_pred             CCcceehhhhhh
Confidence            789998876543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=80.71  E-value=2.1  Score=32.79  Aligned_cols=81  Identities=9%  Similarity=-0.071  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcC
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~  103 (258)
                      ++.++|=-|.+.|.   .+..+++.+. +|+.+|.+++.++.+.+.+...   .++.++++|+.+..--    +...+..
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCC---CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            36777877766652   2344455566 8999999999888877766432   2788999999874321    1122234


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      +..|+++.+.+.
T Consensus        81 G~iDiLVnnAg~   92 (251)
T d1zk4a1          81 GPVSTLVNNAGI   92 (251)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCceEEEecccc
Confidence            789998876644

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.03  E-value=3.2  Score=31.71  Aligned_cols=83  Identities=12%  Similarity=-0.030  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCCCCc---cHHHHHHcCCCeEEEEecChhHHHHHHHHHHhcCCCceeEEEEcCCCCCchh----hhhhhcC
Q 025059           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA  103 (258)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~  103 (258)
                      ++.++|=-|++.|.   .+..+++.+. +|+.+|.+++.++.+.+.+.... +.++.++.+|+.+..-.    +......
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46788888877762   3445555566 89999999988887766553321 22678899999774321    1112234


Q ss_pred             CceeEEEecccc
Q 025059          104 NQADLVCCFQHL  115 (258)
Q Consensus       104 ~~fD~V~~~~~l  115 (258)
                      ++.|+++.+.+.
T Consensus        82 g~iDiLVnnAG~   93 (251)
T d1vl8a_          82 GKLDTVVNAAGI   93 (251)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            689999887654