Citrus Sinensis ID: 025071
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 258 | ||||||
| 255540409 | 264 | conserved hypothetical protein [Ricinus | 0.961 | 0.939 | 0.718 | 2e-99 | |
| 225424554 | 248 | PREDICTED: uncharacterized protein LOC10 | 0.918 | 0.955 | 0.714 | 9e-92 | |
| 224133788 | 192 | predicted protein [Populus trichocarpa] | 0.744 | 1.0 | 0.828 | 2e-90 | |
| 359491729 | 252 | PREDICTED: uncharacterized protein LOC10 | 0.864 | 0.884 | 0.708 | 3e-90 | |
| 224110814 | 248 | predicted protein [Populus trichocarpa] | 0.798 | 0.830 | 0.762 | 2e-89 | |
| 255547952 | 249 | conserved hypothetical protein [Ricinus | 0.833 | 0.863 | 0.734 | 3e-88 | |
| 356528430 | 244 | PREDICTED: uncharacterized protein LOC10 | 0.763 | 0.807 | 0.781 | 1e-87 | |
| 297803636 | 942 | hypothetical protein ARALYDRAFT_329184 [ | 0.930 | 0.254 | 0.671 | 5e-87 | |
| 4678259 | 942 | putative protein [Arabidopsis thaliana] | 0.748 | 0.204 | 0.788 | 2e-86 | |
| 186478827 | 239 | S-adenosylmethionine-dependent methyltra | 0.891 | 0.962 | 0.668 | 3e-86 |
| >gi|255540409|ref|XP_002511269.1| conserved hypothetical protein [Ricinus communis] gi|223550384|gb|EEF51871.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 181/252 (71%), Positives = 207/252 (82%), Gaps = 4/252 (1%)
Query: 5 IPKLPLLLKPFFVSLFFSFFLLTFLCLSRSPHHRKPTTGTPSPKK---SSAGGESNDLRI 61
I KLPL+LKPF +SL S L F+ S +PHHRK T +P + ++ ++ LRI
Sbjct: 9 ISKLPLILKPFLLSLILSISALIFIA-SLTPHHRKVNIITETPHQLSSATNTSSTSGLRI 67
Query: 62 RPGYASYETYIQHQLNKTLNPKLRAVWTTRDWERKVRVFSRFFQDLKQRHFLFNESKALS 121
RPGY+SY YIQHQLNKTLNPKLR +W TRDW+RKV VF++FF LK+R+ L + SKALS
Sbjct: 68 RPGYSSYNAYIQHQLNKTLNPKLRQIWKTRDWDRKVNVFAQFFSSLKERNLLSDSSKALS 127
Query: 122 IGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSNVFDHALY 181
IGARVGQEV AL+ +GV+DSIGIDLVP PPLVIKGDFHAQPF N TFDFEFSNVFDHALY
Sbjct: 128 IGARVGQEVEALRRIGVADSIGIDLVPSPPLVIKGDFHAQPFKNETFDFEFSNVFDHALY 187
Query: 182 PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGF 241
PWKFVGEIERTLKP GVCV+HVALSRRADKYSANDL+SV PL LF+ESELV V+KVDGF
Sbjct: 188 PWKFVGEIERTLKPGGVCVIHVALSRRADKYSANDLYSVGPLTDLFKESELVDVKKVDGF 247
Query: 242 GLDTEVVFRKKK 253
GLDTEVVFRKK+
Sbjct: 248 GLDTEVVFRKKR 259
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424554|ref|XP_002282020.1| PREDICTED: uncharacterized protein LOC100261196 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 342 bits (877), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 175/245 (71%), Positives = 195/245 (79%), Gaps = 8/245 (3%)
Query: 9 PLLLKPFFVSLFFSFFLLTFLCLSRSPHHRKPTTGTPSPKKSSAGGESNDLRIRPGYASY 68
PL LK FF SLF S +L L S RK T P P +G DLRIRPGY SY
Sbjct: 7 PLFLKYFFFSLFVSIPIL--LLFSFQSLRRKTTD--PPPGNQPSG----DLRIRPGYTSY 58
Query: 69 ETYIQHQLNKTLNPKLRAVWTTRDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQ 128
E Y+Q QLNKTLNPKLR +WTTRDW+RK+ VF++FFQDLKQ+ L NESKAL IGARVGQ
Sbjct: 59 EAYLQLQLNKTLNPKLRKIWTTRDWDRKINVFAQFFQDLKQKQLLKNESKALCIGARVGQ 118
Query: 129 EVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSNVFDHALYPWKFVGE 188
EV AL+ VGV+DS+GIDLVP PPLV+KGDFH QPF N TFDFEFSNVFDHALYP KFVGE
Sbjct: 119 EVEALRRVGVADSVGIDLVPYPPLVLKGDFHNQPFKNDTFDFEFSNVFDHALYPDKFVGE 178
Query: 189 IERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVV 248
IERTL+P GVCVLHVALSRR+DKYSANDL+SV+PL ++F SE+V VR VDGFGLDTEVV
Sbjct: 179 IERTLRPGGVCVLHVALSRRSDKYSANDLYSVRPLTEMFGRSEVVHVRTVDGFGLDTEVV 238
Query: 249 FRKKK 253
FRKKK
Sbjct: 239 FRKKK 243
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133788|ref|XP_002321661.1| predicted protein [Populus trichocarpa] gi|222868657|gb|EEF05788.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 159/192 (82%), Positives = 177/192 (92%)
Query: 62 RPGYASYETYIQHQLNKTLNPKLRAVWTTRDWERKVRVFSRFFQDLKQRHFLFNESKALS 121
RPGY+SY+ YIQ QLNKTLNPKLR +WTTRDWERKVRVF++FF+ LK+R+ L N SKALS
Sbjct: 1 RPGYSSYDEYIQRQLNKTLNPKLRQIWTTRDWERKVRVFAQFFESLKRRNLLLNSSKALS 60
Query: 122 IGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSNVFDHALY 181
IGARVGQEV+ALK +GV+DSIGIDLVP PPLV+KGDFHAQPF N TFDFEFSNVFDHALY
Sbjct: 61 IGARVGQEVSALKSIGVNDSIGIDLVPYPPLVVKGDFHAQPFMNDTFDFEFSNVFDHALY 120
Query: 182 PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGF 241
PWKFVGEIERTLKP GVCV+HVALSRRADKYSANDL+SV PLV+LF++S+LV VRKVDGF
Sbjct: 121 PWKFVGEIERTLKPGGVCVVHVALSRRADKYSANDLYSVGPLVELFKDSQLVEVRKVDGF 180
Query: 242 GLDTEVVFRKKK 253
GLDTEVVFRK K
Sbjct: 181 GLDTEVVFRKNK 192
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491729|ref|XP_002277691.2| PREDICTED: uncharacterized protein LOC100248419 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 168/237 (70%), Positives = 196/237 (82%), Gaps = 14/237 (5%)
Query: 22 SFFLLTFLCLSRSPHHRKPTTGTPSPKKSSAGGESNDLRIRPGYASYETYIQHQLNKTLN 81
S +L FL L ++P HR P K S G LRIRPGY+SY++YIQHQLNKTLN
Sbjct: 30 SLAVLFFLAL-QTPRHRNP--------KLSPG-----LRIRPGYSSYDSYIQHQLNKTLN 75
Query: 82 PKLRAVWTTRDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDS 141
PKLR +WTTRDW+RKV VFS+FF+ LK+R LFN+SKAL IGARVGQEV AL+ VGV DS
Sbjct: 76 PKLRKIWTTRDWDRKVLVFSQFFRGLKERKLLFNDSKALCIGARVGQEVEALRRVGVGDS 135
Query: 142 IGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVL 201
+G+DLVP PPLV+KGDFH+QPFD+ TFDFEFSNVFDHAL+PWKFV EIERTL+ G+CVL
Sbjct: 136 VGMDLVPYPPLVLKGDFHSQPFDDETFDFEFSNVFDHALHPWKFVREIERTLRAGGICVL 195
Query: 202 HVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKKKKKSNS 258
HVALSRRADKYSANDL+SV PLV+LFR+S+LV VR VDGFGLDTEVVFRKK+K+ +
Sbjct: 196 HVALSRRADKYSANDLYSVAPLVELFRKSDLVGVRNVDGFGLDTEVVFRKKEKEKKN 252
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110814|ref|XP_002315644.1| predicted protein [Populus trichocarpa] gi|222864684|gb|EEF01815.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 157/206 (76%), Positives = 182/206 (88%)
Query: 53 GGESNDLRIRPGYASYETYIQHQLNKTLNPKLRAVWTTRDWERKVRVFSRFFQDLKQRHF 112
G ++DL+IRPGY +Y+TYIQ QLNKTLNPKLR +WTTRDW+RK++VF+ FFQ LKQ +
Sbjct: 37 GNPNSDLKIRPGYTTYKTYIQRQLNKTLNPKLRKIWTTRDWDRKIQVFADFFQVLKQENL 96
Query: 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEF 172
LFNESKAL IGARVGQEV AL+ +GVSDS+G+DLVP PPLV++GDFH QPFD+GTFDFEF
Sbjct: 97 LFNESKALCIGARVGQEVEALRRIGVSDSVGMDLVPYPPLVVEGDFHRQPFDDGTFDFEF 156
Query: 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232
SNVFDHAL+P KFVGEIERTLKP G+CVLHVALSRRADKYSANDL+SVKPLV LF S++
Sbjct: 157 SNVFDHALFPDKFVGEIERTLKPGGICVLHVALSRRADKYSANDLYSVKPLVNLFTNSKV 216
Query: 233 VAVRKVDGFGLDTEVVFRKKKKKSNS 258
V VRKVDGFGLDTEVVFRK +K+
Sbjct: 217 VRVRKVDGFGLDTEVVFRKIEKQDQE 242
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547952|ref|XP_002515033.1| conserved hypothetical protein [Ricinus communis] gi|223546084|gb|EEF47587.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 330 bits (847), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 158/215 (73%), Positives = 180/215 (83%)
Query: 39 KPTTGTPSPKKSSAGGESNDLRIRPGYASYETYIQHQLNKTLNPKLRAVWTTRDWERKVR 98
K TT P S+ L+IRPGY +Y++YIQ QLNKTLNPKLR W TRDW+RKVR
Sbjct: 34 KTTTNPPPANDRSSTATITGLKIRPGYKTYDSYIQRQLNKTLNPKLRKTWLTRDWDRKVR 93
Query: 99 VFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDF 158
VF+ FFQDLKQ + +FN SKALSIGARVGQEV A K +GV+DS+GIDLVP PP VIKGDF
Sbjct: 94 VFAHFFQDLKQENLVFNNSKALSIGARVGQEVEAFKRIGVTDSVGIDLVPYPPSVIKGDF 153
Query: 159 HAQPFDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLF 218
H QPFD+ TFDFEFSNVFDHAL+P KFV EIERTLKP GVCVLHVA++RR+DKYSANDLF
Sbjct: 154 HHQPFDDETFDFEFSNVFDHALFPEKFVSEIERTLKPGGVCVLHVAVNRRSDKYSANDLF 213
Query: 219 SVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKKK 253
SV+PL++LF+ SELV VRKVDGFGLDTEVVF+KKK
Sbjct: 214 SVQPLIQLFKNSELVHVRKVDGFGLDTEVVFKKKK 248
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528430|ref|XP_003532806.1| PREDICTED: uncharacterized protein LOC100817246 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 154/197 (78%), Positives = 174/197 (88%)
Query: 56 SNDLRIRPGYASYETYIQHQLNKTLNPKLRAVWTTRDWERKVRVFSRFFQDLKQRHFLFN 115
+NDLRIRPGY+SY++YIQ QLNKTLNP+LR +WTTRDW RK+ VF+RFF+DLK + L N
Sbjct: 46 TNDLRIRPGYSSYDSYIQRQLNKTLNPRLRKIWTTRDWNRKIPVFARFFEDLKDKKLLNN 105
Query: 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSNV 175
SKAL IGARVGQEV AL+ +GVSDS+G+DLVP PPLV+KGDFH QPFD+GTFDFEFSNV
Sbjct: 106 ASKALCIGARVGQEVEALRRIGVSDSVGMDLVPYPPLVVKGDFHNQPFDDGTFDFEFSNV 165
Query: 176 FDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAV 235
FDHALYP +FVGEIERTLKP GVCVLHVALSRRADKYSANDLFSV+PLV +F+ S LV V
Sbjct: 166 FDHALYPERFVGEIERTLKPNGVCVLHVALSRRADKYSANDLFSVEPLVAMFKNSALVHV 225
Query: 236 RKVDGFGLDTEVVFRKK 252
R VDGFGLDTEV FRK
Sbjct: 226 RSVDGFGLDTEVAFRKN 242
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297803636|ref|XP_002869702.1| hypothetical protein ARALYDRAFT_329184 [Arabidopsis lyrata subsp. lyrata] gi|297315538|gb|EFH45961.1| hypothetical protein ARALYDRAFT_329184 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 326 bits (836), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 170/253 (67%), Positives = 192/253 (75%), Gaps = 13/253 (5%)
Query: 1 MKPTIPKLPLLLKPFFVSLFFSFFLLTFLCLSRSPHHRKPTTGTPSPKKSSAGGESND-L 59
MK IPKLP L FL F PTT P SS +++ +
Sbjct: 698 MKFVIPKLPFTLSLLLSLSLLIIFLFAF-----------PTTFLRRPLSSSVIAVADEGI 746
Query: 60 RIRP-GYASYETYIQHQLNKTLNPKLRAVWTTRDWERKVRVFSRFFQDLKQRHFLFNESK 118
RIR GY+SYE YI+HQLNKT NPKLR VWTTRDW+RKVRVFS FF+ L R L N+SK
Sbjct: 747 RIRHHGYSSYEAYIKHQLNKTQNPKLRKVWTTRDWDRKVRVFSTFFRRLSDRGLLSNQSK 806
Query: 119 ALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSNVFDH 178
ALSIGARVGQEVAAL+L+GV DS+GIDLVPRPPLV+KGDFHAQPFD TFDFEFSNVFDH
Sbjct: 807 ALSIGARVGQEVAALRLIGVEDSVGIDLVPRPPLVVKGDFHAQPFDEETFDFEFSNVFDH 866
Query: 179 ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKV 238
ALYP KFVGEIERTLKP GVCVLHV++S + DKYSANDLFSVKPLV LF+ S++V +RK+
Sbjct: 867 ALYPEKFVGEIERTLKPGGVCVLHVSISGKTDKYSANDLFSVKPLVNLFKRSKVVEMRKI 926
Query: 239 DGFGLDTEVVFRK 251
DGFGLDTE+VFRK
Sbjct: 927 DGFGLDTEIVFRK 939
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4678259|emb|CAB41120.1| putative protein [Arabidopsis thaliana] gi|7269331|emb|CAB79390.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 153/194 (78%), Positives = 172/194 (88%), Gaps = 1/194 (0%)
Query: 59 LRIRP-GYASYETYIQHQLNKTLNPKLRAVWTTRDWERKVRVFSRFFQDLKQRHFLFNES 117
+RIR GY+SYE YI+HQLNKT NPKLR VWTTRDW+RKVRVFS FF+ L R L N+S
Sbjct: 746 IRIRHHGYSSYEAYIKHQLNKTQNPKLRKVWTTRDWDRKVRVFSTFFRRLSDRGLLSNQS 805
Query: 118 KALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSNVFD 177
KALSIGARVGQEVAAL+L+GV DS+GIDLVPRPPLV+KGDFHAQPFD TFDFEFSNVFD
Sbjct: 806 KALSIGARVGQEVAALRLIGVEDSVGIDLVPRPPLVVKGDFHAQPFDEETFDFEFSNVFD 865
Query: 178 HALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRK 237
HALYP KFVGEIERTLKP GVCVLHV++S + DKYSANDL SVKPLVKLF+ S++V +RK
Sbjct: 866 HALYPEKFVGEIERTLKPGGVCVLHVSISGKTDKYSANDLLSVKPLVKLFKRSKVVEMRK 925
Query: 238 VDGFGLDTEVVFRK 251
+DGFGLDTE+VFRK
Sbjct: 926 IDGFGLDTEIVFRK 939
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186478827|ref|NP_173857.2| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|9743354|gb|AAF97978.1|AC000103_28 F21J9.14 [Arabidopsis thaliana] gi|332192414|gb|AEE30535.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 163/244 (66%), Positives = 187/244 (76%), Gaps = 14/244 (5%)
Query: 13 KPFFVSLFFSFFLLTFLCLSRSPHHRKPTTGTPSPKKSSAGGESNDLRIRPGYASYETYI 72
KP + S FL L L S RKP E +RIRPGY SY+ YI
Sbjct: 5 KPILKYVLVSIFLTLPLILFFSIQLRKP--------------EKELIRIRPGYTSYDYYI 50
Query: 73 QHQLNKTLNPKLRAVWTTRDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAA 132
Q QLNKTLNP+LR +W TRDW+RK++VFSRFFQDLK++ L +SK L +GARVGQEV A
Sbjct: 51 QRQLNKTLNPRLRTIWMTRDWDRKIKVFSRFFQDLKRQGLLSKDSKCLCLGARVGQEVEA 110
Query: 133 LKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSNVFDHALYPWKFVGEIERT 192
LK VGV+DS+G+DLVP PPLV+KGDFH QPFD+ TFDFEFSNVFDHALYP KFVGEIERT
Sbjct: 111 LKRVGVNDSVGMDLVPYPPLVVKGDFHHQPFDDETFDFEFSNVFDHALYPDKFVGEIERT 170
Query: 193 LKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKK 252
L+P G+CVLHVALS R+DKYSANDLFSV+ LVKLFR+SE+V VR VDGFGLDTEVVFRKK
Sbjct: 171 LRPGGLCVLHVALSTRSDKYSANDLFSVEALVKLFRQSEVVHVRNVDGFGLDTEVVFRKK 230
Query: 253 KKKS 256
+ S
Sbjct: 231 RDSS 234
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 258 | ||||||
| TAIR|locus:504955468 | 247 | AT4G24805 [Arabidopsis thalian | 0.821 | 0.858 | 0.740 | 9.4e-82 | |
| TAIR|locus:2023986 | 239 | AT1G24480 [Arabidopsis thalian | 0.782 | 0.845 | 0.752 | 1.4e-80 | |
| TAIR|locus:2149790 | 513 | AT5G01710 [Arabidopsis thalian | 0.565 | 0.284 | 0.401 | 1e-23 | |
| TAIR|locus:2052936 | 231 | AT2G16030 [Arabidopsis thalian | 0.620 | 0.692 | 0.350 | 5.5e-22 | |
| TAIR|locus:2116412 | 208 | AT4G26730 [Arabidopsis thalian | 0.651 | 0.807 | 0.329 | 4.4e-20 | |
| TAIR|locus:2084021 | 466 | AT3G53400 "AT3G53400" [Arabido | 0.651 | 0.360 | 0.296 | 6e-09 |
| TAIR|locus:504955468 AT4G24805 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
Identities = 160/216 (74%), Positives = 180/216 (83%)
Query: 40 PTTGTPSPKKSSAGGES---NDLRIRP-GYASYETYIQHQLNKTLNPKLRAVWTTRDWER 95
PTT P SS+ S +RIR GY+SYE YI+HQLNKT NPKLR VWTTRDW+R
Sbjct: 29 PTTFLRRPLSSSSSVTSVADEGIRIRHHGYSSYEAYIKHQLNKTQNPKLRKVWTTRDWDR 88
Query: 96 KVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIK 155
KVRVFS FF+ L R L N+SKALSIGARVGQEVAAL+L+GV DS+GIDLVPRPPLV+K
Sbjct: 89 KVRVFSTFFRRLSDRGLLSNQSKALSIGARVGQEVAALRLIGVEDSVGIDLVPRPPLVVK 148
Query: 156 GDFHAQPFDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSAN 215
GDFHAQPFD TFDFEFSNVFDHALYP KFVGEIERTLKP GVCVLHV++S + DKYSAN
Sbjct: 149 GDFHAQPFDEETFDFEFSNVFDHALYPEKFVGEIERTLKPGGVCVLHVSISGKTDKYSAN 208
Query: 216 DLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRK 251
DL SVKPLVKLF+ S++V +RK+DGFGLDTE+VFRK
Sbjct: 209 DLLSVKPLVKLFKRSKVVEMRKIDGFGLDTEIVFRK 244
|
|
| TAIR|locus:2023986 AT1G24480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 152/202 (75%), Positives = 175/202 (86%)
Query: 55 ESNDLRIRPGYASYETYIQHQLNKTLNPKLRAVWTTRDWERKVRVFSRFFQDLKQRHFLF 114
E +RIRPGY SY+ YIQ QLNKTLNP+LR +W TRDW+RK++VFSRFFQDLK++ L
Sbjct: 33 EKELIRIRPGYTSYDYYIQRQLNKTLNPRLRTIWMTRDWDRKIKVFSRFFQDLKRQGLLS 92
Query: 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSN 174
+SK L +GARVGQEV ALK VGV+DS+G+DLVP PPLV+KGDFH QPFD+ TFDFEFSN
Sbjct: 93 KDSKCLCLGARVGQEVEALKRVGVNDSVGMDLVPYPPLVVKGDFHHQPFDDETFDFEFSN 152
Query: 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVA 234
VFDHALYP KFVGEIERTL+P G+CVLHVALS R+DKYSANDLFSV+ LVKLFR+SE+V
Sbjct: 153 VFDHALYPDKFVGEIERTLRPGGLCVLHVALSTRSDKYSANDLFSVEALVKLFRQSEVVH 212
Query: 235 VRKVDGFGLDTEVVFRKKKKKS 256
VR VDGFGLDTEVVFRKK+ S
Sbjct: 213 VRNVDGFGLDTEVVFRKKRDSS 234
|
|
| TAIR|locus:2149790 AT5G01710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 278 (102.9 bits), Expect = 1.0e-23, P = 1.0e-23
Identities = 63/157 (40%), Positives = 89/157 (56%)
Query: 87 VWTTRDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDL 146
++TTRDW + V+ +S FQDL +L ESK L + +GQEV +L+ +GV +S+GI
Sbjct: 81 LYTTRDWIKSVQFYSSIFQDLIADGYLSPESKTLCVETAIGQEVHSLREIGVKNSVGISK 140
Query: 147 VPRPPLVIKGDFHAQPFDNGTFDFEFS--NVFDHALYPWKFVGEIERTLKPAGVCVLHVA 204
PLV++G+ HA PF++ FDF FS + +L +F EI RTLKP G V+HV
Sbjct: 141 KASRPLVVRGEGHAIPFEDNAFDFVFSGGDRLGKSLKQLEFADEITRTLKPEGFAVVHVG 200
Query: 205 LSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGF 241
A D +S + LF LV +R +DGF
Sbjct: 201 ---------ATDTYSFNSFLDLFNSCRLVKMRDIDGF 228
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| TAIR|locus:2052936 AT2G16030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 60/171 (35%), Positives = 95/171 (55%)
Query: 82 PKLRA-VWTTRDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSD 140
PK A +W++ W+ ++ FS +F + F+ N +KAL + A G + AL +G+SD
Sbjct: 64 PKKNARIWSSGAWKSRLYSFSTYFLRFRDLGFIQNHTKALCLSAGAGHALMALSQIGLSD 123
Query: 141 SIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCV 200
++LV PLV + D H PF +G FDF F+ AL+PW+FV E+ERT++ G CV
Sbjct: 124 VTAVELVDSIPLVKRADPHNLPFFDGVFDFAFTAHLAEALFPWQFVEEMERTVRRGGFCV 183
Query: 201 LHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLD-TEVVFR 250
+ V D+ +D V+ + +LF S++V V V G T ++F+
Sbjct: 184 VSV------DECGGDD---VRDIARLFHNSKVVDVANVTLEGSKKTSILFK 225
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| TAIR|locus:2116412 AT4G26730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 59/179 (32%), Positives = 94/179 (52%)
Query: 82 PKLRA-VWTTRDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSD 140
PK A +W + W+ ++ FS +F + F+ N +KAL + G AL +G+SD
Sbjct: 29 PKKNARIWFSGAWKSRLSSFSTYFLRFRDLGFIQNHTKALCLSDGAGHAPMALSQIGLSD 88
Query: 141 SIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCV 200
++LV PLV + D H PF + FDF F+ AL+PW+FV E+ERT++ G CV
Sbjct: 89 VTAVELVDSIPLVKRADPHNLPFFDRVFDFVFTAHLAEALFPWRFVEEMERTVRRGGFCV 148
Query: 201 LHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLD-TEVVFRKKKKKSNS 258
+ V D+ S +D V+ + + F S++V V V + T ++F+ + K S
Sbjct: 149 VAV------DECSGDD---VRDIARFFHNSKIVDVANVTLERVKRTSILFKLQDSKRTS 198
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| TAIR|locus:2084021 AT3G53400 "AT3G53400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 154 (59.3 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 54/182 (29%), Positives = 90/182 (49%)
Query: 81 NPKLRAVWTTRDWER-KVRVF--SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVG 137
N L+ VW + ++ K ++ ++ ++L + L N+SKAL IG R V A+ G
Sbjct: 80 NRFLKPVWNYLESDKCKDNIYLTTQVVRELTGMNLLSNDSKALCIGRRSVSAVLAMNRQG 139
Query: 138 VSDSIGIDLVPRPPLVIKG-DFHAQ-PFDNGTFDFEFSNVFDHALYPWKFVGEIERTLKP 195
+SD + + +P P K F ++ +++ +F F FS + P V EIER LKP
Sbjct: 140 ISD-VSVAYMP-PVFAFKHRKFTSELHYEDASFGFVFSMDLESVAVPASLVYEIERILKP 197
Query: 196 AGVCVLHVALSRRADKYSANDLF-SVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKKKK 254
G + V + +D +N+L SV P+ L + S +V V + G VVF++ +
Sbjct: 198 GGTGAMLVGTTSGSD---SNELVRSVSPVSSLLKNSSVVHVASL---GKQVLVVFKRDGE 251
Query: 255 KS 256
S
Sbjct: 252 DS 253
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 258 231 0.00084 113 3 11 22 0.40 33
32 0.42 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 607 (65 KB)
Total size of DFA: 182 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.71u 0.11s 19.82t Elapsed: 00:00:01
Total cpu time: 19.72u 0.11s 19.83t Elapsed: 00:00:01
Start: Thu May 9 14:16:53 2013 End: Thu May 9 14:16:54 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00030700001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (248 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 258 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 4e-11 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 1e-04 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 2e-04 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-11
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 120 LSIGARVGQEVAALKLVGVSDSIGIDLVPR---------PPLVIKGDFHAQPFDNGTFDF 170
L +G G AL G + G+DL P P + GD PF + +FD
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAEDLPFPDESFDV 60
Query: 171 EFSN-VFDHALYPWKFVGEIERTLKPAGVCVL 201
S+ V H P + + EI R LKP G V+
Sbjct: 61 VVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
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Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 7/137 (5%)
Query: 102 RFFQDLKQRHFLFNESKA--LSIGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFH 159
RF L R + L IG G + L+ G D G+D P L+
Sbjct: 7 RFLARLLARLLPRLKPGGRVLDIGCGTGILLRLLRERGF-DVTGVDPSPAAVLIFSLFDA 65
Query: 160 AQPFD-NGTFDF-EFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDL 217
P G +D V +H P + ++ LKP GV ++ L+ + AN
Sbjct: 66 PDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVLLISTPLADDDARLFANWH 125
Query: 218 FSVKPL--VKLFRESEL 232
+ + + E L
Sbjct: 126 YLRPRNTHISFYSEESL 142
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This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 27/123 (21%)
Query: 103 FFQDLKQRHF----LFNESKALSIGARVGQEVAALK-LVGVSDS--IGIDLVPRPPLV-- 153
F+ + R F + + L +G G + L VG + +GID ++
Sbjct: 3 DFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVG-PEGRVVGID--RSEAMLAL 59
Query: 154 --------------IKGDFHAQPFDNGTFDFEFS-NVFDHALYPWKFVGEIERTLKPAGV 198
++GD PF +G+FD S V H P + + EI R L+P G
Sbjct: 60 AKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGR 119
Query: 199 CVL 201
V+
Sbjct: 120 VVV 122
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Length = 241 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 258 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.89 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.85 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.8 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.79 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.78 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.75 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.75 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.74 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.74 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.74 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.74 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.72 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.7 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.69 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.69 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.67 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.65 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.64 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.61 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.61 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.6 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.59 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.57 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.56 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.56 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.55 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.55 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.55 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.55 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.54 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.54 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.53 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.52 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.51 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.51 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.5 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.5 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.5 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.49 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.49 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.48 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.47 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.47 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.46 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.45 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.45 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.44 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.43 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.42 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.41 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.41 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.4 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.4 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.39 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.39 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.38 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.37 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.37 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.36 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.35 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.32 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.32 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.32 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.31 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.31 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.28 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.27 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.27 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.26 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.25 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.25 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.25 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.23 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.23 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.22 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.21 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.2 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.2 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.2 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.19 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.18 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.17 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.16 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.16 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.16 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.15 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.15 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.14 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.14 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.14 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.12 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.11 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.11 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.1 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.09 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.08 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.08 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.07 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.03 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.03 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.02 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.99 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.99 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.98 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.96 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.95 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.95 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.93 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.91 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.91 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.9 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.9 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.89 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.88 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.88 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.88 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.87 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.85 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.84 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.83 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.82 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.82 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.81 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.8 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.8 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.78 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.77 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.76 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.76 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.75 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.75 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.74 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.71 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.69 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.68 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.67 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.66 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.65 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.63 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.63 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.62 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.59 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.59 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.56 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.55 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.55 | |
| PLN02366 | 308 | spermidine synthase | 98.5 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.5 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.47 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.46 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.45 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.43 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.42 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.42 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 98.41 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.4 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.37 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.37 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.35 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.34 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.34 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.33 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.32 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.31 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.28 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.27 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.25 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.22 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.19 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.15 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.13 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.12 | |
| PLN02476 | 278 | O-methyltransferase | 98.11 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 98.11 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.0 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.99 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.98 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.98 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.95 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.95 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.94 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.9 | |
| PLN02823 | 336 | spermine synthase | 97.9 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.86 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.86 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.86 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.85 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.84 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.84 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.82 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.81 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.75 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.75 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.74 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.71 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.68 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.64 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.61 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.56 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.52 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.48 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.47 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.45 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.43 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.38 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.37 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.37 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.37 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.35 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.34 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.28 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.26 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.25 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.24 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.22 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.2 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.1 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.0 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.94 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 96.92 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.92 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.91 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.87 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.86 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 96.84 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.79 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.78 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.78 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.77 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.74 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.72 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.69 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.67 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.59 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.56 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.47 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.43 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.12 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.08 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.98 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.94 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.81 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.74 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 95.74 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 95.39 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.37 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.33 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 95.14 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 94.99 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.87 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.78 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 94.77 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 94.75 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 94.66 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 94.52 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.47 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 94.13 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 93.89 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 93.37 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 93.21 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 92.94 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 92.92 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 92.67 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 92.58 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 91.84 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 91.56 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 91.36 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 91.28 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 91.25 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 91.21 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 90.87 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 90.82 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 90.35 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 90.33 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 90.27 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 89.99 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 89.41 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 89.21 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 88.68 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 87.5 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 87.15 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 86.63 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 86.41 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 86.37 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 86.28 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 86.23 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 86.15 | |
| PHA01634 | 156 | hypothetical protein | 86.08 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 85.91 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 85.38 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 85.15 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 84.93 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 84.56 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 84.09 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 82.35 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 80.99 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 80.9 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 80.57 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 80.3 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.3e-23 Score=182.12 Aligned_cols=163 Identities=20% Similarity=0.236 Sum_probs=119.1
Q ss_pred HHHhcccChhhHhhhCchhHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCC--
Q 025071 74 HQLNKTLNPKLRAVWTTRDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRP-- 150 (258)
Q Consensus 74 ~~l~~~l~~~l~~~W~~~~w~~~~~~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~-- 150 (258)
+.+|+.++..++..|+. .+++.....+|.+|||||||||..+..+++. |..+|+|+|+|+.+
T Consensus 25 D~~n~~~S~g~~~~Wr~---------------~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~ 89 (238)
T COG2226 25 DLMNDLMSFGLHRLWRR---------------ALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLE 89 (238)
T ss_pred HhhcccccCcchHHHHH---------------HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHH
Confidence 44667777777788752 1222223447899999999999999999874 55689999997531
Q ss_pred -------------CceeeecCCCCCCCCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCc-------
Q 025071 151 -------------PLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA------- 209 (258)
Q Consensus 151 -------------~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~------- 209 (258)
..+++|||++|||+|+|||+|.++ .++++.+++++++|++|||||||++++.--..+..
T Consensus 90 ~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~ 169 (238)
T COG2226 90 VAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAY 169 (238)
T ss_pred HHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHH
Confidence 347899999999999999999996 89999999999999999999999888863211110
Q ss_pred C------------c--------C-----CCCCCCChhHHHHHhhcCceEEeeeec-CCCCeEEEEEEe
Q 025071 210 D------------K--------Y-----SANDLFSVKPLVKLFRESELVAVRKVD-GFGLDTEVVFRK 251 (258)
Q Consensus 210 ~------------~--------y-----~~~~~~s~~~l~~lf~~~~~~~v~~v~-g~~l~~~~~f~K 251 (258)
. . | +...+.+.+++.+++.+.|+..+..-+ .+|.-...+-+|
T Consensus 170 ~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 170 ILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred HHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 0 0 0 112234778899999999998888444 555544444443
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-21 Score=172.83 Aligned_cols=127 Identities=23% Similarity=0.317 Sum_probs=67.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec-
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
..++.+|||+|||||..+..+++. + ...|+|+|+|+. ...++++|+++|||+|+|||+|++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 457889999999999999988764 3 248999999752 2357899999999999999999986
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEe-ccccCc-------------------------CcC-----CCCCCCChhHH
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHV-ALSRRA-------------------------DKY-----SANDLFSVKPL 223 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v-~~~~~~-------------------------~~y-----~~~~~~s~~~l 223 (258)
.++++.++.++++|++|||||||+++++. ..++.. ..| +..++.+.+++
T Consensus 125 glrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~ 204 (233)
T PF01209_consen 125 GLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEEL 204 (233)
T ss_dssp -GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH------------------------------------
T ss_pred hHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999988863 222110 011 23344578899
Q ss_pred HHHhhcCceEEeeeec
Q 025071 224 VKLFRESELVAVRKVD 239 (258)
Q Consensus 224 ~~lf~~~~~~~v~~v~ 239 (258)
.++++++|+.++...+
T Consensus 205 ~~~l~~~Gf~~v~~~~ 220 (233)
T PF01209_consen 205 KELLEEAGFKNVEYRP 220 (233)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 9999999988776543
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=154.97 Aligned_cols=134 Identities=22% Similarity=0.223 Sum_probs=103.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC------------------CCceeeecCCCCCCCCCCeeEE
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR------------------PPLVIKGDFHAQPFDNGTFDFE 171 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~------------------~~~~~~aDa~~LPf~d~SFD~V 171 (258)
.+.++.+|||+|||||..+..+++. + ..+|+|+|+++. ...++++|++++||++++||+|
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 3567889999999999999888764 4 247999998742 1236889999999999999999
Q ss_pred Eec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCc-------------------------CcC-----CCCCCCCh
Q 025071 172 FSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA-------------------------DKY-----SANDLFSV 220 (258)
Q Consensus 172 ~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-------------------------~~y-----~~~~~~s~ 220 (258)
+++ +++|+.++..+++|++|+|||||++++........ +.| +..++++.
T Consensus 150 ~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~ 229 (261)
T PLN02233 150 TMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTG 229 (261)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCH
Confidence 985 89999999999999999999999998874321110 000 11356799
Q ss_pred hHHHHHhhcCceEEeeeec-CCCCeE
Q 025071 221 KPLVKLFRESELVAVRKVD-GFGLDT 245 (258)
Q Consensus 221 ~~l~~lf~~~~~~~v~~v~-g~~l~~ 245 (258)
+++.++++++|+..+...+ +++.-+
T Consensus 230 ~el~~ll~~aGF~~~~~~~~~~g~~~ 255 (261)
T PLN02233 230 EELEKLALEAGFSSAKHYEISGGLMG 255 (261)
T ss_pred HHHHHHHHHCCCCEEEEEEcCCCeeE
Confidence 9999999999988777654 444433
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=161.63 Aligned_cols=125 Identities=24% Similarity=0.296 Sum_probs=98.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-cc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-VF 176 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l 176 (258)
.++.+|||||||+|..+..|++....+|+|+|+++. ...++++|+.++||++++||+|++. ++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 567899999999999999998752248999998742 2347889999999999999999995 89
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEeccccC---c----------------CcCCCCCCCChhHHHHHhhcCceEEeee
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVALSRR---A----------------DKYSANDLFSVKPLVKLFRESELVAVRK 237 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~---~----------------~~y~~~~~~s~~~l~~lf~~~~~~~v~~ 237 (258)
+|+.++.++++|++|+|||||++++.....+. . ..|...++.+.+++.++++++|+..+..
T Consensus 197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~ 276 (340)
T PLN02244 197 EHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKT 276 (340)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEe
Confidence 99999999999999999999999886432211 0 0111223357899999999999876654
Q ss_pred e
Q 025071 238 V 238 (258)
Q Consensus 238 v 238 (258)
.
T Consensus 277 ~ 277 (340)
T PLN02244 277 E 277 (340)
T ss_pred e
Confidence 3
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-19 Score=132.46 Aligned_cols=82 Identities=38% Similarity=0.514 Sum_probs=69.3
Q ss_pred EEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------CCceeeecCCCCCCCCCCeeEEEec-cccccCChHHHH
Q 025071 120 LSIGARVGQEVAALKLVGVSDSIGIDLVPR------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFV 186 (258)
Q Consensus 120 LDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l 186 (258)
||+|||+|..+..|++.+..+++|+|+++. ...+..+|++++||+++|||+|++. +++|+.++.+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l 80 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAAL 80 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHH
Confidence 899999999999999885568999998742 1238899999999999999999995 888888999999
Q ss_pred HHHHhcccCCcEEEE
Q 025071 187 GEIERTLKPAGVCVL 201 (258)
Q Consensus 187 ~Ei~RVLKPGG~lii 201 (258)
+|+.|+|||||++++
T Consensus 81 ~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 81 REIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHEEEEEEEEE
T ss_pred HHHHHHcCcCeEEeC
Confidence 999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=148.00 Aligned_cols=146 Identities=14% Similarity=0.079 Sum_probs=107.4
Q ss_pred hhCchhHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC--------CCceeeec
Q 025071 87 VWTTRDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR--------PPLVIKGD 157 (258)
Q Consensus 87 ~W~~~~w~~~~~~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~--------~~~~~~aD 157 (258)
+|+...|.+........+..+++.....++.+|||||||+|..+..|++.. ..+|+|+|+++. ...++++|
T Consensus 1 ~w~~~~y~~~~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d 80 (255)
T PRK14103 1 MWDPDVYLAFADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGD 80 (255)
T ss_pred CCCHHHHHHHHhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcC
Confidence 366666655444333445556655445678899999999999999998752 347999999753 23578899
Q ss_pred CCCCCCCCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCc------------CcC----------CC
Q 025071 158 FHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA------------DKY----------SA 214 (258)
Q Consensus 158 a~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~------------~~y----------~~ 214 (258)
+++++ ++++||+|+++ +++|+.++..++++++|+|||||.+++.++..... ..+ ..
T Consensus 81 ~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 159 (255)
T PRK14103 81 VRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVG 159 (255)
T ss_pred hhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccC
Confidence 98885 67899999996 88999999999999999999999999875421100 011 11
Q ss_pred CCCCChhHHHHHhhcCceE
Q 025071 215 NDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 215 ~~~~s~~~l~~lf~~~~~~ 233 (258)
..+.+.+++.++++++|+.
T Consensus 160 ~~~~~~~~~~~~l~~aGf~ 178 (255)
T PRK14103 160 AVVQTPAGYAELLTDAGCK 178 (255)
T ss_pred cCCCCHHHHHHHHHhCCCe
Confidence 2345889999999999974
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-17 Score=144.72 Aligned_cols=137 Identities=19% Similarity=0.206 Sum_probs=100.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC-------CceeeecCCCCCCCCCCeeEEEec-cccccCChHHHH
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP-------PLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFV 186 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~-------~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l 186 (258)
++.+|||||||||..+..+++....+|+|+|+|+.+ ...+++|++++||+|++||+|+++ +++|+.++++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l 130 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVI 130 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHHH
Confidence 478999999999999999987622489999997532 236789999999999999999996 899999999999
Q ss_pred HHHHhcccCCcEEEEEeccccCc-------------------------CcC-----CCCCCCChhHHHHHhhcC-ceEEe
Q 025071 187 GEIERTLKPAGVCVLHVALSRRA-------------------------DKY-----SANDLFSVKPLVKLFRES-ELVAV 235 (258)
Q Consensus 187 ~Ei~RVLKPGG~lii~v~~~~~~-------------------------~~y-----~~~~~~s~~~l~~lf~~~-~~~~v 235 (258)
+|++|||||.+ .++.++.+... ..| +...+.+.+++.++++++ +.+..
T Consensus 131 ~e~~RvLkp~~-~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~~~~~~ 209 (226)
T PRK05785 131 AEFTRVSRKQV-GFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYADIKVY 209 (226)
T ss_pred HHHHHHhcCce-EEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHhCceEE
Confidence 99999999943 23333221100 011 223345778999999985 34444
Q ss_pred eeecCCCCeEEEEEEeCC
Q 025071 236 RKVDGFGLDTEVVFRKKK 253 (258)
Q Consensus 236 ~~v~g~~l~~~~~f~K~~ 253 (258)
... .+|.-+..+-+|++
T Consensus 210 ~~~-~~G~~~~~~~~k~~ 226 (226)
T PRK05785 210 EER-GLGLVYFVVGSSRG 226 (226)
T ss_pred EEc-cccEEEEEEEeeCC
Confidence 443 56776777777764
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.2e-18 Score=137.88 Aligned_cols=123 Identities=28% Similarity=0.446 Sum_probs=97.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC-----CceeeecCCCCCCCCCCeeEEEec-cccccCChHHHH
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP-----PLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFV 186 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~-----~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l 186 (258)
..++.+|||+|||+|..+..+++.|. +++|+|+++.. ......+....++++++||+|+|+ +++|+.+|..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l 98 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFL 98 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHH
Confidence 46788999999999999999998887 89999997532 123334445667889999999995 899999999999
Q ss_pred HHHHhcccCCcEEEEEeccccC-------cCcC-----CCCCCCChhHHHHHhhcCceEEee
Q 025071 187 GEIERTLKPAGVCVLHVALSRR-------ADKY-----SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 187 ~Ei~RVLKPGG~lii~v~~~~~-------~~~y-----~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+++.++|||||++++.++.... .-.+ ....+++.+++.+++++.|+..+.
T Consensus 99 ~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 99 KELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 9999999999999998775310 0011 223457999999999999987654
|
... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-17 Score=149.94 Aligned_cols=148 Identities=18% Similarity=0.231 Sum_probs=107.0
Q ss_pred HHHhcccChhhHhhhCchhHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-C------CCcEEEEeC
Q 025071 74 HQLNKTLNPKLRAVWTTRDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-G------VSDSIGIDL 146 (258)
Q Consensus 74 ~~l~~~l~~~l~~~W~~~~w~~~~~~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g------~~~v~GvD~ 146 (258)
..+|+.++...+++|... + +......++.++||+|||||..+..+.+. + ..+|+.+|+
T Consensus 74 D~mND~mSlGiHRlWKd~------------~---v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Di 138 (296)
T KOG1540|consen 74 DIMNDAMSLGIHRLWKDM------------F---VSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDI 138 (296)
T ss_pred HHHHHHhhcchhHHHHHH------------h---hhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeC
Confidence 456777777788888521 1 11123346789999999999998766442 2 257999999
Q ss_pred CCC------------------CCceeeecCCCCCCCCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEE-eccc
Q 025071 147 VPR------------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLH-VALS 206 (258)
Q Consensus 147 s~~------------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~-v~~~ 206 (258)
++. ...|+.+|++.|||+|++||..+++ .+..+.+++++++|++|||||||++.+. ++..
T Consensus 139 np~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 139 NPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred CHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 752 1247889999999999999999885 8999999999999999999999998876 3321
Q ss_pred cC------cC---------------------cC---CCCCCCChhHHHHHhhcCceEEee
Q 025071 207 RR------AD---------------------KY---SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 207 ~~------~~---------------------~y---~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
.. .+ .| +.+.+.+-+++..+-.++|+..+.
T Consensus 219 ~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 219 ENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred ccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 10 01 11 233444667788888888877665
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-17 Score=143.60 Aligned_cols=119 Identities=19% Similarity=0.280 Sum_probs=95.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC----------CceeeecCCCCCCCCCCeeEEEec-cccccCCh
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP----------PLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYP 182 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~----------~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p 182 (258)
.++.+|||+|||+|..+..+++.| .+++|+|+++.. ..++++|++.+|+++++||+|+++ +++|..++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~ 119 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL 119 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH
Confidence 356799999999999999888776 489999997531 247889999999999999999996 78888899
Q ss_pred HHHHHHHHhcccCCcEEEEEeccccC-----------cCcCCCCCCCChhHHHHHhhcCceE
Q 025071 183 WKFVGEIERTLKPAGVCVLHVALSRR-----------ADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v~~~~~-----------~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
..+++|+.|+|||||.+++....... ......+++++.+++..++++.++.
T Consensus 120 ~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 181 (251)
T PRK10258 120 STALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQ 181 (251)
T ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCce
Confidence 99999999999999999987543211 0112345667889999999877643
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=152.06 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=95.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-ccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~ 177 (258)
++.+|||||||+|..+..|++.|. +|+|||.++. ...++++|++++|+++++||+|++. +++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 567999999999999999988775 7999998742 1246788999999999999999995 899
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEeccccC--------cC----c------CCCCCCCChhHHHHHhhcCceEE
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHVALSRR--------AD----K------YSANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~--------~~----~------y~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
|+.+|..+++|+.|+|||||.+++.+..... .. . .....+++.+++.+++++.|+..
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i 284 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDV 284 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeE
Confidence 9999999999999999999999998642210 00 0 01124679999999999988653
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=140.38 Aligned_cols=140 Identities=21% Similarity=0.265 Sum_probs=104.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
.+.++.+|||+|||+|..+..+++. + ..+|+|+|+++. ...++.+|++.+|+++++||+|+++
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 121 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG 121 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence 4567889999999999999888764 3 247999998742 1246788999999999999999985
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEeccccCcC--------------------------cC-----CCCCCCChhH
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRAD--------------------------KY-----SANDLFSVKP 222 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~--------------------------~y-----~~~~~~s~~~ 222 (258)
.++|..++.++++|+.|+|||||++++......... .| ....+.+.++
T Consensus 122 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (231)
T TIGR02752 122 FGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDE 201 (231)
T ss_pred cccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHH
Confidence 788999999999999999999999987643221100 00 1123457789
Q ss_pred HHHHhhcCceEEeeeec-CCCCeEEEEEEe
Q 025071 223 LVKLFRESELVAVRKVD-GFGLDTEVVFRK 251 (258)
Q Consensus 223 l~~lf~~~~~~~v~~v~-g~~l~~~~~f~K 251 (258)
+.++++++|+..+.... .+|..+.++-+|
T Consensus 202 l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 202 LAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 99999999987665443 446666666554
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=146.46 Aligned_cols=127 Identities=20% Similarity=0.188 Sum_probs=97.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC----------------CceeeecCCCCCCCCCCeeEEEec-c
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP----------------PLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~----------------~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
..++.+|||||||+|..+..++..|...|+|+|.++.. ..+..++++++|+. ++||+|+|. +
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 34678999999999999888888776679999987521 13456778888875 489999995 8
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEeccc---c-----CcCcCC----CCCCCChhHHHHHhhcCceEEeeeecC
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHVALS---R-----RADKYS----ANDLFSVKPLVKLFRESELVAVRKVDG 240 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~---~-----~~~~y~----~~~~~s~~~l~~lf~~~~~~~v~~v~g 240 (258)
++|..+|..+++|++|+|||||.+++..... . ....|. ...+++..++..+++++|+..+..++.
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 9999999999999999999999999863211 1 011221 123458999999999999998876643
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=146.64 Aligned_cols=125 Identities=23% Similarity=0.310 Sum_probs=98.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-cc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-VF 176 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l 176 (258)
..+.+|||||||+|..+..+++.|...|+|+|.++. ...++.+|++++|+ +++||+|+|. ++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 357899999999999999998888667999998641 12467788999999 8899999995 89
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEecc---cc-----CcCcCCC-C---CCCChhHHHHHhhcCceEEeeeec
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVAL---SR-----RADKYSA-N---DLFSVKPLVKLFRESELVAVRKVD 239 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~~---~~-----~~~~y~~-~---~~~s~~~l~~lf~~~~~~~v~~v~ 239 (258)
+|..+|..++++++|+|||||.+++.... .. ..+.|.. . .+.+..++..++.++|+..+..++
T Consensus 200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 99999999999999999999999886321 10 0112311 1 134889999999999988776653
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-16 Score=140.52 Aligned_cols=133 Identities=20% Similarity=0.253 Sum_probs=100.0
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCeeEEEe
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFDFEFS 173 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD~V~s 173 (258)
+++...+.++.+|||||||+|..+..+++....+|+|+|+++. ...+..+|+.++||++++||+|++
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s 123 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYS 123 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEE
Confidence 3433356788999999999999988887532248999998742 134678899999999999999999
Q ss_pred c-cccccC--ChHHHHHHHHhcccCCcEEEEEeccccCcC-------cC---CCCCCCChhHHHHHhhcCceEEeeeec
Q 025071 174 N-VFDHAL--YPWKFVGEIERTLKPAGVCVLHVALSRRAD-------KY---SANDLFSVKPLVKLFRESELVAVRKVD 239 (258)
Q Consensus 174 ~-~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~-------~y---~~~~~~s~~~l~~lf~~~~~~~v~~v~ 239 (258)
. ++.|+. ++..+++|++|+|||||++++......... .+ ...++.+..++.++++++|+..+...+
T Consensus 124 ~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 124 RDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEe
Confidence 4 778875 788999999999999999998744221110 11 122456889999999999987766543
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=136.65 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=93.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCC-CCCCCeeEEEec-c
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQP-FDNGTFDFEFSN-V 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LP-f~d~SFD~V~s~-~ 175 (258)
.++.+|||+|||+|..+..|++.|. +|+|+|+++. ...++++|+.+++ +.+++||+|++. +
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4567999999999999999998874 8999999742 1246778888774 778999999995 8
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEeccccC----------c----Cc------C--CCCCCCChhHHHHHhhcCceE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHVALSRR----------A----DK------Y--SANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~----------~----~~------y--~~~~~~s~~~l~~lf~~~~~~ 233 (258)
++|+.+|..+++++.|+|||||++++....... . .. . .....++.+++.+++++.|+.
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~ 201 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQ 201 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCe
Confidence 899999999999999999999999886432110 0 00 0 112235789999999999876
Q ss_pred Eee
Q 025071 234 AVR 236 (258)
Q Consensus 234 ~v~ 236 (258)
.+.
T Consensus 202 ~~~ 204 (255)
T PRK11036 202 IMG 204 (255)
T ss_pred Eee
Confidence 543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=145.81 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=100.0
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEE
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEF 172 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~ 172 (258)
+++...+.++.+|||||||+|..+..|++....+|+|+|+|+. ...+.++|+.++|+++++||+|+
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~ 337 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIY 337 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEE
Confidence 3443345677899999999999988887642247999999742 12467899999999999999999
Q ss_pred ec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCc---C---cC---CCCCCCChhHHHHHhhcCceEEee
Q 025071 173 SN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA---D---KY---SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 173 s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~---~---~y---~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
|. +++|+.+|..+++|++|+|||||.+++........ . .+ ....+++.+++.++++++|+..+.
T Consensus 338 s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~ 411 (475)
T PLN02336 338 SRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVI 411 (475)
T ss_pred ECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeee
Confidence 95 89999999999999999999999999874322110 0 01 113456889999999999987664
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-15 Score=134.15 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=86.2
Q ss_pred hCchhHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------CCceeee
Q 025071 88 WTTRDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------PPLVIKG 156 (258)
Q Consensus 88 W~~~~w~~~~~~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------~~~~~~a 156 (258)
|+...+.+.........+.+++...+.++.+|||||||+|..+..+++. +..+|+|+|+++. ...+..+
T Consensus 4 w~~~~Y~~~~~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~ 83 (258)
T PRK01683 4 WNPSLYLKFEDERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA 83 (258)
T ss_pred CCHHHHHHHHHHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC
Confidence 5544443322222223444554444567889999999999999988864 3458999999752 2346788
Q ss_pred cCCCCCCCCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 157 DFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 157 Da~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|+..++ ++++||+|+++ +++|+.++..+++++.|+|||||.+++.++
T Consensus 84 d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 84 DIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred chhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 888775 45699999996 788999999999999999999999998754
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=125.56 Aligned_cols=120 Identities=22% Similarity=0.282 Sum_probs=85.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC---------------CceeeecCCCCCCCCCCeeEEEec-cc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP---------------PLVIKGDFHAQPFDNGTFDFEFSN-VF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~d~SFD~V~s~-~l 176 (258)
..++.+|||+|||+|..+..|++.|. +|+|+|+|+.. ..+.++|+.+++++ ++||+|+++ ++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~ 105 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVL 105 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecch
Confidence 34568999999999999999998875 89999997521 23566788888875 579999996 56
Q ss_pred cccC--ChHHHHHHHHhcccCCcEEEEEeccccCcCcC--CCCCCCChhHHHHHhhcCceEE
Q 025071 177 DHAL--YPWKFVGEIERTLKPAGVCVLHVALSRRADKY--SANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 177 ~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y--~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
+|+. +...+++++.|+|||||++++......+...+ .....++.+++.++|+....++
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~ 167 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWEMVK 167 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhCCCeEEE
Confidence 6554 34678999999999999965542221111111 1123468899999998444443
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=136.45 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=94.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC------------CCceeeecCCCCCCCCCCeeEEEec-ccccc
Q 025071 114 FNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHA 179 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~ 179 (258)
.++.+|||||||+|..+..+++ .+..+++|+|.++. ...++.+|++++||++++||+|+++ +++|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3567999999999998877765 34458999998642 2346889999999999999999995 78999
Q ss_pred CChHHHHHHHHhcccCCcEEEEEeccccC--cCcC-C--CCCCCChhHHHHHhhcCceEEee
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLHVALSRR--ADKY-S--ANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~v~~~~~--~~~y-~--~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
.+++.+++|++|+|||||++++..+.... ...+ . ...+.+.+++.+++++.|+..+.
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEE
Confidence 99999999999999999998876432211 0011 0 01234789999999999986544
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.9e-16 Score=136.92 Aligned_cols=118 Identities=19% Similarity=0.286 Sum_probs=91.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC--------------ceeeecCCCCCCCCCCeeEEEec-cccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP--------------LVIKGDFHAQPFDNGTFDFEFSN-VFDH 178 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~--------------~~~~aDa~~LPf~d~SFD~V~s~-~l~h 178 (258)
.++.+|||||||.|.++..|++.| +.|+|+|+++.+. .+.++.+++|-.+.++||+|+|. +++|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 378899999999999999999999 5899999976432 14445566666666899999996 9999
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEeccccCc-------------------CcCCCCCCCChhHHHHHhhcCceE
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHVALSRRA-------------------DKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-------------------~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
+++|+.+++++.+.+||||.+++.... |.. .......+...+|+..++.+.++.
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STin-rt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~ 209 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTIN-RTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLK 209 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccc-cCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCce
Confidence 999999999999999999999997653 210 011122345678888888876543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=124.25 Aligned_cols=121 Identities=21% Similarity=0.297 Sum_probs=85.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec-cccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDH 178 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h 178 (258)
.++.+|||+|||+|..+.+|++.|. +|+|+|+++. ......+|...++++ ++||+|+++ +++|
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc
Confidence 3567999999999999999998885 8999999752 123455677667765 589999996 6666
Q ss_pred cC--ChHHHHHHHHhcccCCcEEEEEeccc-cCcCc-CCCCCCCChhHHHHHhhcCceEEee
Q 025071 179 AL--YPWKFVGEIERTLKPAGVCVLHVALS-RRADK-YSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 179 ~~--~p~~~l~Ei~RVLKPGG~lii~v~~~-~~~~~-y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+. +...++++++|+|||||++++..... ..... ......++..++.++|.....+...
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~~~~~~~~ 168 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYADWELLKYN 168 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCCCeEEEee
Confidence 64 34578899999999999865543211 11111 1123357899999999876555444
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=131.96 Aligned_cols=124 Identities=27% Similarity=0.390 Sum_probs=97.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCc--eeeecCCCCCCCCCCeeEEEe-cccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPL--VIKGDFHAQPFDNGTFDFEFS-NVFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~--~~~aDa~~LPf~d~SFD~V~s-~~l~ 177 (258)
.|.+|||||||+|...-.+...|...|+|+|.+.. ... ..-...+.||. .++||+|+| +++-
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 68899999999999999999889888999997531 111 12135678888 789999999 5999
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEecccc--------CcCcCC-CCCC---CChhHHHHHhhcCceEEeeeec
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHVALSR--------RADKYS-ANDL---FSVKPLVKLFRESELVAVRKVD 239 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~--------~~~~y~-~~~~---~s~~~l~~lf~~~~~~~v~~v~ 239 (258)
|..+|-..++++...|+|||.+++.+-.-. ..++|. .+++ .|...+..|++++|+.+++.++
T Consensus 194 Hrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 194 HRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVD 267 (315)
T ss_pred ccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEec
Confidence 999999999999999999999998643211 123452 2222 3899999999999999998875
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.4e-14 Score=122.58 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=87.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC---------------------------CceeeecCCCCCCC-C
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP---------------------------PLVIKGDFHAQPFD-N 165 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~---------------------------~~~~~aDa~~LPf~-d 165 (258)
.++++|||+|||.|..+.+|++.|+ +|+|+|+|+.. ..+.++|+.+++.. .
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 5678999999999999999999997 79999987531 23478898888754 4
Q ss_pred CCeeEEEec-cccccCCh--HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhc-CceEEeee
Q 025071 166 GTFDFEFSN-VFDHALYP--WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRE-SELVAVRK 237 (258)
Q Consensus 166 ~SFD~V~s~-~l~h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~-~~~~~v~~ 237 (258)
+.||.|+.. +++|++.. ..+++.+.++|||||++++..-.............++..++.++|.. .++..+..
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~~~ 187 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELLES 187 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEEee
Confidence 679999985 67777522 34789999999999975554221111111112234688999999974 36655544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.7e-14 Score=126.46 Aligned_cols=124 Identities=22% Similarity=0.311 Sum_probs=92.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHh-cCC-CcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec-
Q 025071 113 LFNESKALSIGARVGQEVAALKL-VGV-SDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~-~g~-~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
+.++.+|||+|||+|..+..+++ .|. .+|+|+|+++. ...+..+|++++|+++++||+|+++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 56789999999999997766554 343 36999998642 1235778999999999999999996
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEeccccCc-C--------cC--CCCCCCChhHHHHHhhcCceEEee
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA-D--------KY--SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-~--------~y--~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+++|..++..+++|++|+|||||++++.-...... . .+ .....++.+++.+++++.|+..+.
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~ 227 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDIT 227 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceE
Confidence 78888899999999999999999998862211100 0 00 011234678899999988876543
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=119.38 Aligned_cols=125 Identities=26% Similarity=0.371 Sum_probs=93.4
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhcC--CCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLVG--VSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~g--~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
..+.++.+|||+|||+|..+..+++.. ..+++|+|+++. ...+..+|+..+|+++++||+|++.
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 94 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSD 94 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEe
Confidence 345678899999999999998887642 357999998742 1236778999999999999999995
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEecccc----Cc-C---------cC--CCCCCCChhHHHHHhhcCceEEe
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVALSR----RA-D---------KY--SANDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~----~~-~---------~y--~~~~~~s~~~l~~lf~~~~~~~v 235 (258)
+++|+.++..+++++.++|||||.+++..+... .. . .+ ...+.+....+.++++++|+..+
T Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 172 (241)
T PRK08317 95 RVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDI 172 (241)
T ss_pred chhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCce
Confidence 899999999999999999999999988653210 00 0 00 11122345678888998887643
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.5e-14 Score=126.71 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=87.3
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------CceeeecCCCCCCCCCCeeEEEec-ccccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------PLVIKGDFHAQPFDNGTFDFEFSN-VFDHA 179 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~ 179 (258)
++++|||+|||+|..+.+|++.|. +|+|+|+++.. ..+..+|+...++ +++||+|++. +++|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 456999999999999999998885 89999987521 2345667776666 7899999996 66665
Q ss_pred C--ChHHHHHHHHhcccCCcEEEEEeccccCcCc--CCCCCCCChhHHHHHhhcCceEEee
Q 025071 180 L--YPWKFVGEIERTLKPAGVCVLHVALSRRADK--YSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 180 ~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~--y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
. +...+++++.|+|||||++++.......... -+....++..++.++|+..+++...
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~~~i~~~~ 258 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQDWEIVKYN 258 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCCCEEEEEe
Confidence 4 3456889999999999997665332211101 1223447899999999987776653
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=118.61 Aligned_cols=140 Identities=21% Similarity=0.201 Sum_probs=104.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC--CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG--VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g--~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
..++.+|||+|||+|..+..+++.+ ..+++|+|+++. ...+..+|+..+++++++||+|+++
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence 3467899999999999998887755 368999998631 1246778998999988999999985
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEeccccCcC-------------------cCCC------------CCCCChhH
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRAD-------------------KYSA------------NDLFSVKP 222 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~-------------------~y~~------------~~~~s~~~ 222 (258)
+++|..++...++++.++|+|||.+++......... .+.. ...++..+
T Consensus 129 ~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (239)
T PRK00216 129 FGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEE 208 (239)
T ss_pred cccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHH
Confidence 788999999999999999999999877532111000 0000 22457788
Q ss_pred HHHHhhcCceEEeeeec-CCCCeEEEEEEeC
Q 025071 223 LVKLFRESELVAVRKVD-GFGLDTEVVFRKK 252 (258)
Q Consensus 223 l~~lf~~~~~~~v~~v~-g~~l~~~~~f~K~ 252 (258)
+.+++.++|+..+.... .+++.+....+|+
T Consensus 209 ~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 209 LAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 99999999987665443 6677677777664
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.6e-14 Score=122.22 Aligned_cols=122 Identities=21% Similarity=0.322 Sum_probs=93.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------CCceeeecCC-CCC-CCCCCeeEEEec-cccccC
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------PPLVIKGDFH-AQP-FDNGTFDFEFSN-VFDHAL 180 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------~~~~~~aDa~-~LP-f~d~SFD~V~s~-~l~h~~ 180 (258)
.++++++|||+|||.|.+..+|.+.......|+|+++. ...++++|++ .|+ |+|+|||.|+.+ ++.++.
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 36789999999999999999998743347999998753 2358888876 454 999999999986 899999
Q ss_pred ChHHHHHHHHhcccCCcEEEEEeccccC---------------cC--c---C--CCCCCCChhHHHHHhhcCceEEee
Q 025071 181 YPWKFVGEIERTLKPAGVCVLHVALSRR---------------AD--K---Y--SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~v~~~~~---------------~~--~---y--~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+|+.+++|+.|| |...++++|.-.+ .+ . | +.-++.+.+++.+++++.|+.-..
T Consensus 90 ~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~ 164 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEE 164 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEE
Confidence 999999999888 5578888775321 01 1 1 122456899999999999865444
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-14 Score=122.28 Aligned_cols=116 Identities=22% Similarity=0.292 Sum_probs=89.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC-----------CCceeeecCCCCCCCCCCeeEEEec-cccccCC
Q 025071 115 NESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR-----------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALY 181 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~-----------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~ 181 (258)
.+.+|||+|||+|..+..+++.+ ..+++|+|+++. ...++.+|+..+|+++++||+|+++ +++|..+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 45789999999999999988765 346899998642 1357889999999999999999996 7888889
Q ss_pred hHHHHHHHHhcccCCcEEEEEeccccCcCc----C--CCCCCCChhHHHHHhhcC
Q 025071 182 PWKFVGEIERTLKPAGVCVLHVALSRRADK----Y--SANDLFSVKPLVKLFRES 230 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~----y--~~~~~~s~~~l~~lf~~~ 230 (258)
+..+++++.|+|||||.+++..+....... + ....+++.+++.+++++.
T Consensus 114 ~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (240)
T TIGR02072 114 LSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS 168 (240)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh
Confidence 999999999999999999987643211000 0 123445777788888764
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-13 Score=117.84 Aligned_cols=137 Identities=23% Similarity=0.288 Sum_probs=101.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCC--CcEEEEeCCCC-------------CCceeeecCCCCCCCCCCeeEEEec-ccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGV--SDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~--~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~ 177 (258)
.++.+|||+|||+|..+..+++.+. .+++|+|+++. ...+..+|+.++|+++++||+|+++ +++
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence 3678999999999999988877543 37999998631 2356788999999988999999985 788
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEeccccCc-------------------CcCC-C-----------CCCCChhHHHHH
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHVALSRRA-------------------DKYS-A-----------NDLFSVKPLVKL 226 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-------------------~~y~-~-----------~~~~s~~~l~~l 226 (258)
|..++..+++++.++|||||++++........ ..+. . ..+++.+++.++
T Consensus 118 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
T TIGR01934 118 NVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAM 197 (223)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999998753211110 0000 0 123477889999
Q ss_pred hhcCceEEe--eeecCCCCeEEEEEEe
Q 025071 227 FRESELVAV--RKVDGFGLDTEVVFRK 251 (258)
Q Consensus 227 f~~~~~~~v--~~v~g~~l~~~~~f~K 251 (258)
+.+.|+..+ +.+ .+++...++.||
T Consensus 198 l~~aGf~~~~~~~~-~~~~~~~~~~~~ 223 (223)
T TIGR01934 198 LKEAGFEEVRYRSL-TFGVAAIHVGKK 223 (223)
T ss_pred HHHcCCccceeeee-ecceeeEEEecC
Confidence 999997644 443 556666777664
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.9e-13 Score=115.62 Aligned_cols=107 Identities=16% Similarity=0.107 Sum_probs=81.9
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
..++++.+|||+|||+|..+..++. .+..+|+|+|.++. ...++++|+.+++. +++||+|+++
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~ 119 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSR 119 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEc
Confidence 3455688999999999999888775 33458999998742 13468889988887 7899999996
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
.+ .++..++++++|+|||||++++..... ...++.++.+..|+.
T Consensus 120 ~~---~~~~~~l~~~~~~LkpGG~lv~~~~~~------------~~~~l~~~~~~~~~~ 163 (187)
T PRK00107 120 AV---ASLSDLVELCLPLLKPGGRFLALKGRD------------PEEEIAELPKALGGK 163 (187)
T ss_pred cc---cCHHHHHHHHHHhcCCCeEEEEEeCCC------------hHHHHHHHHHhcCce
Confidence 53 357789999999999999999875421 235567777766754
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.3e-14 Score=116.13 Aligned_cols=89 Identities=29% Similarity=0.473 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCCHHHHHHH-hcC-CCcEEEEeCCCC---------------CCceeeecCCCCC--CCCCCeeEEEec-
Q 025071 115 NESKALSIGARVGQEVAALK-LVG-VSDSIGIDLVPR---------------PPLVIKGDFHAQP--FDNGTFDFEFSN- 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~-~~g-~~~v~GvD~s~~---------------~~~~~~aDa~~LP--f~d~SFD~V~s~- 174 (258)
.+.+|||+|||+|..+..|+ +.+ ..+++|+|+++. ...+.++|+.+++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 56799999999999999998 443 358999998742 1357889999988 77 899999995
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+++|..++..+++++.|+|||||.+++...
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 788999999999999999999999988754
|
... |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=119.55 Aligned_cols=120 Identities=22% Similarity=0.295 Sum_probs=89.6
Q ss_pred EEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-ccccc
Q 025071 118 KALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHA 179 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~ 179 (258)
+|||||||+|..+..+++. +..+|+|+|+++. ...+..+|..+.|++ ++||+|++. +++|+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence 7999999999998888764 3357999998742 124567788777776 489999995 88999
Q ss_pred CChHHHHHHHHhcccCCcEEEEEeccccC----cCcCCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLHVALSRR----ADKYSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~v~~~~~----~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
.++..+++++.|+|||||++++....... ........+.+..++.+++.+.|+..+...
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 99999999999999999999987542110 011111224578889999999987665544
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-14 Score=123.58 Aligned_cols=88 Identities=19% Similarity=0.316 Sum_probs=75.0
Q ss_pred CEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CC---ceeeecCCCCC-CCCCCeeEEEec-cccc
Q 025071 117 SKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PP---LVIKGDFHAQP-FDNGTFDFEFSN-VFDH 178 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~---~~~~aDa~~LP-f~d~SFD~V~s~-~l~h 178 (258)
..||+||||||.+..++.-.....|+++|.++. +. .++.|+++++| .+|+|+|+|++. +++.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 457999999999988876444458999998642 11 27899999999 999999999997 8999
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEec
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
..+|.+.++|+.|+|||||++++...
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 99999999999999999999988743
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.4e-13 Score=113.34 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=82.9
Q ss_pred CCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEeccccc
Q 025071 115 NESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h 178 (258)
++.+|||+|||+|..+..++..+ ..+|+|+|.++. ...++++|+++++ .+++||+|+++.++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~~~- 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRALA- 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehhhh-
Confidence 47899999999999988877643 357999998752 1246788998875 36799999997533
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhc---CceEEeeeecCCCCeEEEEE
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRE---SELVAVRKVDGFGLDTEVVF 249 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~---~~~~~v~~v~g~~l~~~~~f 249 (258)
+....++++.|+|||||.+++..... ...++..+.++ +|+..+.....++-++.+++
T Consensus 120 --~~~~~~~~~~~~LkpgG~lvi~~~~~------------~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 179 (181)
T TIGR00138 120 --SLNVLLELTLNLLKVGGYFLAYKGKK------------YLDEIEEAKRKCQVLGVEPLEVPPLTGPDRHLVI 179 (181)
T ss_pred --CHHHHHHHHHHhcCCCCEEEEEcCCC------------cHHHHHHHHHhhhhcCceEeeccccCCCceEEEE
Confidence 45677889999999999998864321 23445555444 66665555433333455554
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=117.36 Aligned_cols=129 Identities=20% Similarity=0.262 Sum_probs=94.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------CCceeeecCCC-C-CCCCCCeeEEEec-cccccCC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------PPLVIKGDFHA-Q-PFDNGTFDFEFSN-VFDHALY 181 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------~~~~~~aDa~~-L-Pf~d~SFD~V~s~-~l~h~~~ 181 (258)
+.++.+|||+|||+|..+..+++.+...++|+|+++. ...++++|+.+ + ++++++||+|+++ +++|+.+
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 4567899999999999998887654347899998753 23467788865 5 4889999999996 8999999
Q ss_pred hHHHHHHHHhcccCCcEEEEEecccc------------Cc---C--cC-----CCCCCCChhHHHHHhhcCceE--Eeee
Q 025071 182 PWKFVGEIERTLKPAGVCVLHVALSR------------RA---D--KY-----SANDLFSVKPLVKLFRESELV--AVRK 237 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG~lii~v~~~~------------~~---~--~y-----~~~~~~s~~~l~~lf~~~~~~--~v~~ 237 (258)
+..+++|+.|+++++ ++.++... .. . .| ...++++.+++.++++++|+. ....
T Consensus 91 ~~~~l~e~~r~~~~~---ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~ 167 (194)
T TIGR02081 91 PEEILDEMLRVGRHA---IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAA 167 (194)
T ss_pred HHHHHHHHHHhCCeE---EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEE
Confidence 999999999987653 33332210 00 0 01 112467899999999999965 4455
Q ss_pred ecCCCCe
Q 025071 238 VDGFGLD 244 (258)
Q Consensus 238 v~g~~l~ 244 (258)
++++++.
T Consensus 168 ~~~~~~~ 174 (194)
T TIGR02081 168 FDVDGRG 174 (194)
T ss_pred ecccccc
Confidence 6777776
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-13 Score=118.68 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=87.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC---------------------------CceeeecCCCCCCCC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP---------------------------PLVIKGDFHAQPFDN 165 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~---------------------------~~~~~aDa~~LPf~d 165 (258)
..++++|||+|||.|..+.+|++.|+ +|+|+|+++.. ..+.++|+.+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45678999999999999999999997 79999987421 124678888886554
Q ss_pred -CCeeEEEec-cccccCC--hHHHHHHHHhcccCCcEEEEE-ec-cccCcCcCCCCCCCChhHHHHHhhc-CceEEeee
Q 025071 166 -GTFDFEFSN-VFDHALY--PWKFVGEIERTLKPAGVCVLH-VA-LSRRADKYSANDLFSVKPLVKLFRE-SELVAVRK 237 (258)
Q Consensus 166 -~SFD~V~s~-~l~h~~~--p~~~l~Ei~RVLKPGG~lii~-v~-~~~~~~~y~~~~~~s~~~l~~lf~~-~~~~~v~~ 237 (258)
..||+|+.. +++|++. ..++++.+.++|||||.+++. .. ...+... ....++.+++.++|.. .++..+..
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~g--Pp~~~~~~el~~~~~~~~~i~~~~~ 190 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAG--PPFSVSDEEVEALYAGCFEIELLER 190 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCC--CCCCCCHHHHHHHhcCCceEEEeee
Confidence 689999985 5666652 246789999999999964443 21 1111111 1235689999999987 46655443
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-13 Score=118.38 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=72.2
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----CCceeeecCCCCC--------CCCCCeeEEEec-c
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----PPLVIKGDFHAQP--------FDNGTFDFEFSN-V 175 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----~~~~~~aDa~~LP--------f~d~SFD~V~s~-~ 175 (258)
..+.++.+|||+|||||..+..+++. + ...|+|+|+++. ...++++|+.+.+ +.+++||+|+|+ +
T Consensus 47 ~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 47 KLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred ccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 34578889999999999999888764 2 247999999752 2357889988864 788999999996 3
Q ss_pred ccccCCh-----------HHHHHHHHhcccCCcEEEEEec
Q 025071 176 FDHALYP-----------WKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 l~h~~~p-----------~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
.++..++ ..+++++.|+|||||.+++.+.
T Consensus 127 ~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 127 PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 3332222 3578999999999999999653
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=122.77 Aligned_cols=86 Identities=21% Similarity=0.245 Sum_probs=67.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-C---CCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEecccccc
Q 025071 114 FNESKALSIGARVGQEVAALKLV-G---VSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSNVFDHA 179 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g---~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h~ 179 (258)
..+.+|||+|||+|..+..+++. + ...++|+|+++. ...+.++|+.++||++++||+|++...
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~--- 160 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA--- 160 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC---
Confidence 34578999999999999888753 1 136899999752 234788999999999999999998421
Q ss_pred CChHHHHHHHHhcccCCcEEEEEecc
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
| ..++|+.|+|||||++++..+.
T Consensus 161 --~-~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 --P-CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred --C-CCHHHHHhhccCCCEEEEEeCC
Confidence 1 2358999999999999987664
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-13 Score=107.10 Aligned_cols=88 Identities=23% Similarity=0.360 Sum_probs=66.6
Q ss_pred CCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC----------------CCceeeecC-CCCCCCCCCeeEEEecc-
Q 025071 115 NESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR----------------PPLVIKGDF-HAQPFDNGTFDFEFSNV- 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~----------------~~~~~~aDa-~~LPf~d~SFD~V~s~~- 175 (258)
++.+|||||||+|..+.++++ .+..+|+|+|+++. ...++++|+ ....+. +.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 468999999999999999988 23458999998742 224778888 334433 4599999953
Q ss_pred -cccc---CChHHHHHHHHhcccCCcEEEEEe
Q 025071 176 -FDHA---LYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 -l~h~---~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+++. .++.++++++.+.|+|||++++..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3323 345678999999999999999864
|
... |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-12 Score=113.09 Aligned_cols=130 Identities=20% Similarity=0.193 Sum_probs=88.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCCceeeecCCCCCCCCCCeeEEEec-cccccCChHHHHHHHHhc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERT 192 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RV 192 (258)
+++..|-|+|||.+.++..+.. + ..|.-.|+......+..+|..++|.+|++.|+++.+ +|- ..+-..+++|.+||
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~-~-~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLM-GTn~~~fi~EA~Rv 147 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN-K-HKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLM-GTNWPDFIREANRV 147 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S-----EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES----SS-HHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHhccc-C-ceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhh-CCCcHHHHHHHHhe
Confidence 4457899999999999977652 2 269999998777789999999999999999999874 321 23556789999999
Q ss_pred ccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEeCCcC
Q 025071 193 LKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKKKKK 255 (258)
Q Consensus 193 LKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K~~~~ 255 (258)
|||||.+.|..-.+ ++-+.+...+.+++.|+..............+.|+|.+++
T Consensus 148 LK~~G~L~IAEV~S---------Rf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~~~ 201 (219)
T PF05148_consen 148 LKPGGILKIAEVKS---------RFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIRKK 201 (219)
T ss_dssp EEEEEEEEEEEEGG---------G-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-SSS
T ss_pred eccCcEEEEEEecc---------cCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcCcc
Confidence 99999999974332 3336788999999999987776555677789999996654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-13 Score=121.83 Aligned_cols=127 Identities=25% Similarity=0.267 Sum_probs=83.6
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCCCCCC
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDN 165 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d 165 (258)
.++.+++...+++|.+|||||||-|..+.++++. |+ +|+|+.+|+. ...+..+|..+++.
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~-- 126 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG-- 126 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--
Confidence 4555566667889999999999999999999876 75 8999998742 12356677776654
Q ss_pred CCeeEEEe-ccccccC--ChHHHHHHHHhcccCCcEEEEEeccccCc--------C-----c--CCCCCCCChhHHHHHh
Q 025071 166 GTFDFEFS-NVFDHAL--YPWKFVGEIERTLKPAGVCVLHVALSRRA--------D-----K--YSANDLFSVKPLVKLF 227 (258)
Q Consensus 166 ~SFD~V~s-~~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~~--------~-----~--y~~~~~~s~~~l~~lf 227 (258)
+||.|+| .+++|+. +-..+++++.|+|||||+++++..+.... . + ++...+.+..++...+
T Consensus 127 -~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 127 -KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAA 205 (273)
T ss_dssp -S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHH
T ss_pred -CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHH
Confidence 9999999 5899984 44788999999999999998874332110 0 1 2444556888899888
Q ss_pred hcCceE
Q 025071 228 RESELV 233 (258)
Q Consensus 228 ~~~~~~ 233 (258)
.+.++.
T Consensus 206 ~~~~l~ 211 (273)
T PF02353_consen 206 EDAGLE 211 (273)
T ss_dssp HHTT-E
T ss_pred hcCCEE
Confidence 887765
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=115.05 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=89.5
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------CCceeeecCCC----CCCCCCCeeEEE
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------PPLVIKGDFHA----QPFDNGTFDFEF 172 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------~~~~~~aDa~~----LPf~d~SFD~V~ 172 (258)
..+.++.+|||+|||+|..+..+++. +...|+|+|+++. ....+.+|+.. .++. ++||+|+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~ 146 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIY 146 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEE
Confidence 34678899999999999999998874 3247999999752 12456677764 1223 5799999
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCC---eEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGL---DTEVVF 249 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l---~~~~~f 249 (258)
+. +........+++|++|+|||||.+++.++.......-..... .++..+++++.|+..+..++-... .-.+++
T Consensus 147 ~d-~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~--~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~ 223 (226)
T PRK04266 147 QD-VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEI--FKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVA 223 (226)
T ss_pred EC-CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHH--HHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEE
Confidence 74 211111234589999999999999997553211001111111 244569999999888877764444 246777
Q ss_pred Ee
Q 025071 250 RK 251 (258)
Q Consensus 250 ~K 251 (258)
+|
T Consensus 224 ~~ 225 (226)
T PRK04266 224 RK 225 (226)
T ss_pred Ec
Confidence 65
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=116.22 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=90.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc---CCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEe
Q 025071 113 LFNESKALSIGARVGQEVAALKLV---GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFS 173 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~---g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s 173 (258)
+.++.+|||+|||+|..+..+++. +..+++|+|+++. ...++++|+..+|+++ +|+|++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~d~v~~ 128 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN--ASMVIL 128 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC--CCEEee
Confidence 457789999999999998888763 2347999998642 1247889999998864 899888
Q ss_pred c-cccccC--ChHHHHHHHHhcccCCcEEEEEeccccC-----------------cCcCC-------------CCCCCCh
Q 025071 174 N-VFDHAL--YPWKFVGEIERTLKPAGVCVLHVALSRR-----------------ADKYS-------------ANDLFSV 220 (258)
Q Consensus 174 ~-~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~-----------------~~~y~-------------~~~~~s~ 220 (258)
+ +++|+. ++..++++++|+|||||.+++....... ...+. ....++.
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 5 677765 3467899999999999999987431100 01111 1123688
Q ss_pred hHHHHHhhcCceEEeeee
Q 025071 221 KPLVKLFRESELVAVRKV 238 (258)
Q Consensus 221 ~~l~~lf~~~~~~~v~~v 238 (258)
+++.++++++|+.++..+
T Consensus 209 ~~~~~~l~~aGF~~~~~~ 226 (239)
T TIGR00740 209 ETHKARLKNVGFSHVELW 226 (239)
T ss_pred HHHHHHHHHcCCchHHHH
Confidence 999999999998766543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.8e-13 Score=128.09 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=90.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCC--CCCCCCCCeeEEEec-ccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFH--AQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~--~LPf~d~SFD~V~s~-~l~ 177 (258)
.++.+|||||||+|..+..|++.+ .+|+|+|+++. ...++++|+. .+|+++++||+|+++ +++
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 356799999999999999998875 48999998642 1236778875 578999999999996 788
Q ss_pred ccCCh--HHHHHHHHhcccCCcEEEEEeccccCc-C--cC-CCCCCCChhHHHHHhhcCceEEe
Q 025071 178 HALYP--WKFVGEIERTLKPAGVCVLHVALSRRA-D--KY-SANDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 178 h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~~-~--~y-~~~~~~s~~~l~~lf~~~~~~~v 235 (258)
|+.++ ..++++++|+|||||++++.-...... + .. ...+..+.....++|.++++...
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccC
Confidence 88763 578999999999999998864322111 1 11 22233467788999999886644
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.7e-13 Score=119.20 Aligned_cols=90 Identities=23% Similarity=0.229 Sum_probs=68.7
Q ss_pred CCCCEEEEECCCCCHH----HHHHHhcC------CCcEEEEeCCCC----------------------------------
Q 025071 114 FNESKALSIGARVGQE----VAALKLVG------VSDSIGIDLVPR---------------------------------- 149 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~----~~~L~~~g------~~~v~GvD~s~~---------------------------------- 149 (258)
.++.+|||+|||||.. +..|++.+ ...|+|+|+++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 3457999999999974 33444421 137999998641
Q ss_pred --------CCceeeecCCCCCCCCCCeeEEEe-ccccccCChH--HHHHHHHhcccCCcEEEEEe
Q 025071 150 --------PPLVIKGDFHAQPFDNGTFDFEFS-NVFDHALYPW--KFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 150 --------~~~~~~aDa~~LPf~d~SFD~V~s-~~l~h~~~p~--~~l~Ei~RVLKPGG~lii~v 203 (258)
...+.++|+.+.|+++++||+|+| +++.|+.++. +++++++|+|||||++++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 123567888888888999999999 5888886444 69999999999999999853
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.3e-13 Score=117.17 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=85.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHh----cCC-CcEEEEeCCCC------------CCceeeecCCCCCCCCCCeeEEEec-c
Q 025071 114 FNESKALSIGARVGQEVAALKL----VGV-SDSIGIDLVPR------------PPLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~----~g~-~~v~GvD~s~~------------~~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
.++.+|||+|||+|..+..|++ .|. .+++|+|+++. ...+.++++..+|+++++||+|+++ +
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 4567999999999998887764 242 37999998752 1235667888889889999999997 8
Q ss_pred ccccCChH--HHHHHHHhcccCCcEEEEE-ecccc-------------------CcCc-CCCCCCCChhHHHHHhhcCce
Q 025071 176 FDHALYPW--KFVGEIERTLKPAGVCVLH-VALSR-------------------RADK-YSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 176 l~h~~~p~--~~l~Ei~RVLKPGG~lii~-v~~~~-------------------~~~~-y~~~~~~s~~~l~~lf~~~~~ 232 (258)
++|+.+++ .+++|++|++| |.+++. ..... +.+. .+....|+.+++.+++++ |+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf 215 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GW 215 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CC
Confidence 99998764 68999999998 444443 21110 0011 122346899999999998 76
Q ss_pred EEee
Q 025071 233 VAVR 236 (258)
Q Consensus 233 ~~v~ 236 (258)
....
T Consensus 216 ~~~~ 219 (232)
T PRK06202 216 RVER 219 (232)
T ss_pred eEEe
Confidence 5433
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=116.84 Aligned_cols=124 Identities=21% Similarity=0.246 Sum_probs=87.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc---CCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEe
Q 025071 113 LFNESKALSIGARVGQEVAALKLV---GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFS 173 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~---g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s 173 (258)
+.++.+|||||||+|..+..+++. +..+++|+|+++. ...++++|+.++|+++ +|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN--ASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC--CCEEeh
Confidence 457789999999999998877652 2358999998742 2346788999988864 899998
Q ss_pred c-cccccCC--hHHHHHHHHhcccCCcEEEEEeccccC-----------------cCcCCC-----------CC--CCCh
Q 025071 174 N-VFDHALY--PWKFVGEIERTLKPAGVCVLHVALSRR-----------------ADKYSA-----------ND--LFSV 220 (258)
Q Consensus 174 ~-~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v~~~~~-----------------~~~y~~-----------~~--~~s~ 220 (258)
+ +++|+.. ...+++|++|+|||||.+++....... ...|+. +. ..+.
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 6 6777653 356889999999999999886321100 001110 11 1477
Q ss_pred hHHHHHhhcCceEEeeee
Q 025071 221 KPLVKLFRESELVAVRKV 238 (258)
Q Consensus 221 ~~l~~lf~~~~~~~v~~v 238 (258)
++..++++++|+.++..+
T Consensus 212 ~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 212 ETHKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHHHcCchhHHHH
Confidence 888888888888766543
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-13 Score=103.32 Aligned_cols=80 Identities=25% Similarity=0.301 Sum_probs=49.6
Q ss_pred EEECCCCCHHHHHHHhc-CCCcEEEEeCCCCCCc---------------eeeecCCCCC-C-CCCCeeEEEec-cccccC
Q 025071 120 LSIGARVGQEVAALKLV-GVSDSIGIDLVPRPPL---------------VIKGDFHAQP-F-DNGTFDFEFSN-VFDHAL 180 (258)
Q Consensus 120 LDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~~~---------------~~~aDa~~LP-f-~d~SFD~V~s~-~l~h~~ 180 (258)
||||||+|..+..+.+. ...+++|+|+|+.... ....+..+.. . ..++||+|++. +++|+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999888764 3458999999875321 1222222211 1 12599999994 899999
Q ss_pred ChHHHHHHHHhcccCCcEE
Q 025071 181 YPWKFVGEIERTLKPAGVC 199 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~l 199 (258)
++..+++.++++|||||++
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-12 Score=112.43 Aligned_cols=119 Identities=20% Similarity=0.296 Sum_probs=81.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEec-cccccC
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHAL 180 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~ 180 (258)
+.++.+|||||||+|..+..|++. +..+++|+|+++. ...+.++|+.+ |+++++||+|+++ +++|+.
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC
Confidence 456778999999999999999875 4458999999752 13467889888 9999999999996 788875
Q ss_pred --ChHHHHHHHHhcccCCcEEEEEecccc--CcCcCCC--CCCC--C-hhHHHHHhhcCceEE
Q 025071 181 --YPWKFVGEIERTLKPAGVCVLHVALSR--RADKYSA--NDLF--S-VKPLVKLFRESELVA 234 (258)
Q Consensus 181 --~p~~~l~Ei~RVLKPGG~lii~v~~~~--~~~~y~~--~~~~--s-~~~l~~lf~~~~~~~ 234 (258)
+..++++|+.|++ ++.+++...... ....|.. .+.| + .+++.+++.+..+++
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~~l~~~~ 180 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAEYYNPSPVEISYRGNSGRLWKRDFAGEMMDRYPDLKLVD 180 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEEeeCCCceeeeeeCCcchhhhhhHHHHHHHhCCcceeee
Confidence 2356789999998 456655421110 0012211 1122 1 366777777765554
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=8e-12 Score=108.66 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=89.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCC-CCeeEEEec-ccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDN-GTFDFEFSN-VFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d-~SFD~V~s~-~l~ 177 (258)
.+.+|||+|||+|..+..+++.+. .++|+|+++. ...+..+|+.+++... ++||+|+++ .++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 467999999999999988887765 6999998642 1234567777777653 899999995 789
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEeccccC------------c------CcCCCCCCCChhHHHHHhhcCceEEee
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHVALSRR------------A------DKYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~------------~------~~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
|..++..+++++.++|+|||.+++....... . .......+++..++.+++.+.|+.-+.
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~ 200 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKD 200 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeee
Confidence 9999999999999999999998876532110 0 000111345778899999999865443
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-12 Score=110.52 Aligned_cols=119 Identities=21% Similarity=0.317 Sum_probs=80.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec-ccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~ 177 (258)
..+++++||+|||.|+++.+|++.|+ +|+++|.++. .....++|.++..++ +.||+|++. ++.
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~ 105 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFM 105 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGG
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEec
Confidence 34678999999999999999999998 7999998742 223567888888875 689999985 555
Q ss_pred ccCCh--HHHHHHHHhcccCCcEEEEEeccccCcCcC----CCCCCCChhHHHHHhhcCceEEe
Q 025071 178 HALYP--WKFVGEIERTLKPAGVCVLHVALSRRADKY----SANDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 178 h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y----~~~~~~s~~~l~~lf~~~~~~~v 235 (258)
|+..+ ...++.|...++|||+.++...... +.| +....+...|+...|..-+++..
T Consensus 106 fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~--~d~p~~~~~~f~~~~~EL~~~y~dW~il~y 167 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAATKPGGYNLIVTFMET--PDYPCPSPFPFLLKPGELREYYADWEILKY 167 (192)
T ss_dssp GS-GGGHHHHHHHHHHTEEEEEEEEEEEEB----SSS--SS--S--B-TTHHHHHTTTSEEEEE
T ss_pred cCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc--CCCCCCCCCCcccCHHHHHHHhCCCeEEEE
Confidence 55432 3578999999999999877532221 112 11223567889999997776643
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-12 Score=119.66 Aligned_cols=122 Identities=25% Similarity=0.328 Sum_probs=85.4
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCC------------CceeeecCCCCCCCCCCeeE
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRP------------PLVIKGDFHAQPFDNGTFDF 170 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~------------~~~~~aDa~~LPf~d~SFD~ 170 (258)
++.+++...+.++.+|||||||+|..+..+++. |. +|+|+|+++.. ..+..+|...+ +++||.
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~ 231 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDR 231 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCE
Confidence 334444445678899999999999999988864 54 89999997531 12445566554 579999
Q ss_pred EEec-cccccC--ChHHHHHHHHhcccCCcEEEEEeccccC----cC----cC--CCCCCCChhHHHHHhhc
Q 025071 171 EFSN-VFDHAL--YPWKFVGEIERTLKPAGVCVLHVALSRR----AD----KY--SANDLFSVKPLVKLFRE 229 (258)
Q Consensus 171 V~s~-~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~----~~----~y--~~~~~~s~~~l~~lf~~ 229 (258)
|++. .++|+. ++..+++++.|+|||||+++++...... .+ +| +...+.+.+++.+.++.
T Consensus 232 Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~~ 303 (383)
T PRK11705 232 IVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASEG 303 (383)
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHHC
Confidence 9985 788875 3568899999999999999987532211 11 22 22334577888887663
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-13 Score=103.88 Aligned_cols=79 Identities=29% Similarity=0.506 Sum_probs=62.8
Q ss_pred EEEECCCCCHHHHHHHhc---CC-CcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEe-c-cccc
Q 025071 119 ALSIGARVGQEVAALKLV---GV-SDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFS-N-VFDH 178 (258)
Q Consensus 119 VLDIGcGtG~~~~~L~~~---g~-~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s-~-~l~h 178 (258)
|||+|||+|..+..+.+. |. .+++|+|+++. ...++++|+.++|+.+++||+|++ . +++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999998865 32 58999998642 346899999999999999999999 4 5888
Q ss_pred cCCh--HHHHHHHHhcccCCc
Q 025071 179 ALYP--WKFVGEIERTLKPAG 197 (258)
Q Consensus 179 ~~~p--~~~l~Ei~RVLKPGG 197 (258)
+.+. .++++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 6533 457899999999998
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-13 Score=121.87 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=82.7
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC---------------------CceeeecCCCCCCCCCCeeEEEec
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP---------------------PLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~---------------------~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
|.+|||+|||+|-++.-|++.| +.|+|||+++.. ..+...|++.+- +.||+|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 4679999999999999999999 489999986321 112333444332 349999995
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEeccccCc-------------------CcCCCCCCCChhHHHHHhhcCce
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA-------------------DKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-------------------~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
+++|+.+|+.++.-+.+.|||||.++++.-. |.. +.+.-..+.+..++.+++...+.
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittin-rt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~ 242 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTIN-RTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGA 242 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehh-hhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCc
Confidence 9999999999999999999999999997432 110 11122345688899999886654
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.9e-12 Score=109.42 Aligned_cols=124 Identities=17% Similarity=0.201 Sum_probs=91.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------CceeeecCCCCC-CCCCCeeEEEec-cc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------PLVIKGDFHAQP-FDNGTFDFEFSN-VF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------~~~~~aDa~~LP-f~d~SFD~V~s~-~l 176 (258)
..++.+|||||||+|..+..+.+.+. .++|+|+++.. ..+..+++..++ ..++.||+|++. .+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 34678999999999999988888764 79999986421 124556666655 456899999985 78
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEeccccCc------------------CcCCCCCCCChhHHHHHhhcCceEEeee
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVALSRRA------------------DKYSANDLFSVKPLVKLFRESELVAVRK 237 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~------------------~~y~~~~~~s~~~l~~lf~~~~~~~v~~ 237 (258)
+|..++..+++++.++|+|||.+++........ .......+++.+++.+++.+.|+..+..
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeee
Confidence 999999999999999999999998875421100 0001123468889999999999865543
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-12 Score=112.64 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecC-CCCC--CCCCCeeEEEecc
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDF-HAQP--FDNGTFDFEFSNV 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa-~~LP--f~d~SFD~V~s~~ 175 (258)
++.+|||+|||+|..+..+++. +..+++|+|+++. ...++++|+ +.++ +++++||.|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5679999999999999988764 3357999998752 124688898 7887 8899999999852
Q ss_pred cccc-C--------ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 176 FDHA-L--------YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 176 l~h~-~--------~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
-..+ . ....++++++|+|||||.+++...... -..++.+.+.+.|+
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~-----------~~~~~~~~~~~~g~ 174 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG-----------YAEYMLEVLSAEGG 174 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH-----------HHHHHHHHHHhCcc
Confidence 1111 1 136788999999999999998754211 13556666666664
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-11 Score=103.63 Aligned_cols=121 Identities=20% Similarity=0.159 Sum_probs=84.0
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------CceeeecCCCCCCCCCCeeEEEec-ccccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------PLVIKGDFHAQPFDNGTFDFEFSN-VFDHA 179 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~ 179 (258)
++.+|||+|||+|..+..+++.+. +|+|+|+++.. ..+..+|..+.+ +++||+|+++ -+.+.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 567899999999999999988775 89999987531 234667766544 4599999997 33333
Q ss_pred CC---------------------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 180 LY---------------------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 180 ~~---------------------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
.+ ...+++++.|+|||||.+++..+... +..++.+++++.|+......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------GEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------ChHHHHHHHHhCCCeEEEEE
Confidence 21 24578999999999999988654211 25788899988886433322
Q ss_pred -cCCCCeEEEEE
Q 025071 239 -DGFGLDTEVVF 249 (258)
Q Consensus 239 -~g~~l~~~~~f 249 (258)
.++-+.+..+.
T Consensus 165 ~~~~~~~~~~~~ 176 (179)
T TIGR00537 165 ERGLFFEELFAI 176 (179)
T ss_pred EeecCceEEEEE
Confidence 35555444443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-12 Score=129.83 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=72.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------------CCceeeecCCCCC--CCCCCeeEEEec-c
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR--------------PPLVIKGDFHAQP--FDNGTFDFEFSN-V 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~--------------~~~~~~aDa~~LP--f~d~SFD~V~s~-~ 175 (258)
.++.+|||||||+|..+..+++. +..+++|+|+++. ...++++|+.++| |++++||+|+++ .
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 36789999999999998888763 3458999999752 1235778998998 899999999986 5
Q ss_pred ccccC-------------ChHHHHHHHHhcccCCcEEEEEe
Q 025071 176 FDHAL-------------YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 l~h~~-------------~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++|+. ++.+++++++|+|||||.+++..
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 55542 45788999999999999999974
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=112.60 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=88.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC-------------CCceeeecCCC---CCCCCCCeeEEEe
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR-------------PPLVIKGDFHA---QPFDNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~-------------~~~~~~aDa~~---LPf~d~SFD~V~s 173 (258)
.+.++.+|||+|||+|..+..+++. | ...|+++|+++. ....+.+|+.. .++..++||+|++
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 4678899999999999999998875 3 247999998742 12356677653 2224568999999
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeec--CCCCe-EEEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVD--GFGLD-TEVVFR 250 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~--g~~l~-~~~~f~ 250 (258)
.+. ...+...++.|+.|+|||||.+++.+.........+.+..++ +++ +++++.++..+..++ .+.-+ ..|+-+
T Consensus 209 Dva-~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~-~ev-~~L~~~GF~~~e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 209 DVA-QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFA-SEV-QKLKKEGLKPKEQLTLEPFERDHAVVIGV 285 (293)
T ss_pred eCC-CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHH-HHH-HHHHHcCCceEEEEecCCccCCcEEEEEE
Confidence 642 222334566799999999999999653221111112223333 444 788888877666654 34444 344444
Q ss_pred eC
Q 025071 251 KK 252 (258)
Q Consensus 251 K~ 252 (258)
++
T Consensus 286 ~~ 287 (293)
T PTZ00146 286 YR 287 (293)
T ss_pred Ec
Confidence 43
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-11 Score=95.45 Aligned_cols=89 Identities=20% Similarity=0.139 Sum_probs=66.6
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCC-CCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHA-QPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~-LPf~d~SFD~V~s~ 174 (258)
.+.++.+|||+|||+|..+..+++. +..+|+|+|.++. ...++.+|+.. ++...++||.|++.
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEEC
Confidence 3456789999999999999988774 3357999998642 12345566654 44555799999985
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
...+ ...++++++|+|||||.+++.+
T Consensus 96 ~~~~~---~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 96 GSGGL---LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred Ccchh---HHHHHHHHHHHcCCCCEEEEEe
Confidence 3332 3578999999999999999865
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-11 Score=104.14 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=83.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-c
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
..++.+|||+|||+|..+..+++.+. .|+|+|+++. ...+.++|+++++ ++||+|++. +
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 34678999999999999999988764 8999998742 1246778888776 799999985 6
Q ss_pred ccccC--ChHHHHHHHHhcccCCcEEEEEecccc-----C-cCcC------CCCCCCChhHHHHHhhcCceEEe
Q 025071 176 FDHAL--YPWKFVGEIERTLKPAGVCVLHVALSR-----R-ADKY------SANDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 176 l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~-----~-~~~y------~~~~~~s~~~l~~lf~~~~~~~v 235 (258)
++|.. +...+++++.|++++|+.+.+...... . ...+ .....++.+++.+++++.|+..+
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 202 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIV 202 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceee
Confidence 77765 345788999999997766554311100 0 0011 11223588999999999886543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-11 Score=108.17 Aligned_cols=126 Identities=18% Similarity=0.165 Sum_probs=96.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCCceeeecCCCCCCCCCCeeEEEec-cccccCChHHHHHHHHhc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERT 192 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RV 192 (258)
+....|-|+|||.+.++. .. ...|+..|+......++.+|..++|.+|+|.|+++++ +| ...+-..+++|++||
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSL-Mgtn~~df~kEa~Ri 253 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSL-MGTNLADFIKEANRI 253 (325)
T ss_pred cCceEEEecccchhhhhh---cc-ccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhh-hcccHHHHHHHHHHH
Confidence 456789999999998765 11 2479999998777788999999999999999998875 22 223667889999999
Q ss_pred ccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEeCC
Q 025071 193 LKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKKK 253 (258)
Q Consensus 193 LKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K~~ 253 (258)
|||||.++|..-. .++-+..++.+.+..+|+........-...+.+.|+|..
T Consensus 254 Lk~gG~l~IAEv~---------SRf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 254 LKPGGLLYIAEVK---------SRFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKTP 305 (325)
T ss_pred hccCceEEEEehh---------hhcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecCC
Confidence 9999999997432 234467888999999998654443344455789999854
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.1e-11 Score=109.31 Aligned_cols=133 Identities=15% Similarity=0.107 Sum_probs=85.9
Q ss_pred CCCEEEEECCCCCHHHHH-HH-hc-CCCcEEEEeCCCC-----------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 115 NESKALSIGARVGQEVAA-LK-LV-GVSDSIGIDLVPR-----------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~-L~-~~-g~~~v~GvD~s~~-----------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
++.+|+|||||.|..+.. ++ .. ....++|+|+++. ...+.++|+.+++-..+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999998855433 22 33 2346999998641 1347788887765345789999998
Q ss_pred ccccc--CChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEeC
Q 025071 175 VFDHA--LYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKK 252 (258)
Q Consensus 175 ~l~h~--~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K~ 252 (258)
++.++ .++.+++++++|+|||||.+++-.+..-+.-- |..-+. +.++..+...+.+-.+.-..+.++.||+
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~L------Yp~v~~-~~~~gf~~~~~~~P~~~v~Nsvi~~r~~ 275 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFL------YPVVDP-CDLRGFEVLSVFHPTDEVINSVIIARKP 275 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhc------CCCCCh-hhCCCeEEEEEECCCCCceeeEEEEEee
Confidence 77777 58999999999999999999996532211112 211111 1222233333333344455578888886
Q ss_pred Cc
Q 025071 253 KK 254 (258)
Q Consensus 253 ~~ 254 (258)
+.
T Consensus 276 ~~ 277 (296)
T PLN03075 276 GG 277 (296)
T ss_pred cC
Confidence 54
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.6e-11 Score=104.47 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=67.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec--cc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN--VF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~--~l 176 (258)
+.++.+|||+|||+|..+..++..+..+++|+|+++. ...++.+|+.. ++++++||+|+++ ..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCC
Confidence 4567899999999999998888777558999998752 12356677655 4567899999996 22
Q ss_pred cccC--------------------ChHHHHHHHHhcccCCcEEEEEec
Q 025071 177 DHAL--------------------YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 177 ~h~~--------------------~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
.+.. ....+++++.++|||||++++..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1111 024567899999999999988654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.4e-11 Score=108.35 Aligned_cols=131 Identities=21% Similarity=0.235 Sum_probs=91.8
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCCC------------c-eeeecCCCCCCCCCCee
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRPP------------L-VIKGDFHAQPFDNGTFD 169 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~~------------~-~~~aDa~~LPf~d~SFD 169 (258)
++.+.+...+.+|.+|||||||-|..+.++++. | .+|+|+++|+... . -+..-....+.-++.||
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~-v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fD 139 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG-VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFD 139 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC-CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccc
Confidence 334444457889999999999999999998875 5 4899999985321 0 11122233444456699
Q ss_pred EEEe-ccccccCC--hHHHHHHHHhcccCCcEEEEEeccccC-c--------CcC--CCCCCCChhHHHHHhhcCceEEe
Q 025071 170 FEFS-NVFDHALY--PWKFVGEIERTLKPAGVCVLHVALSRR-A--------DKY--SANDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 170 ~V~s-~~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v~~~~~-~--------~~y--~~~~~~s~~~l~~lf~~~~~~~v 235 (258)
-|+| ..++|+-. -..+++.++++|+|||.++++.-..++ . .+| +...+.+..++.+.+.++++...
T Consensus 140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~ 219 (283)
T COG2230 140 RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVL 219 (283)
T ss_pred eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEe
Confidence 9999 58899764 677899999999999999887443322 1 122 33445578888888888886543
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.5e-11 Score=100.55 Aligned_cols=93 Identities=25% Similarity=0.318 Sum_probs=68.9
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCC----CCceeeecCCCCC--------CCCCCeeEEEecc-
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPR----PPLVIKGDFHAQP--------FDNGTFDFEFSNV- 175 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~----~~~~~~aDa~~LP--------f~d~SFD~V~s~~- 175 (258)
..+.++.+|||+|||+|..+..+++. +..+|+|+|+++. ...++++|+.+.+ +++++||+|+++.
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 34678899999999999998877654 2346999999873 2245677877653 5678999999852
Q ss_pred --------ccccC---ChHHHHHHHHhcccCCcEEEEEe
Q 025071 176 --------FDHAL---YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 --------l~h~~---~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++|.. +.+.+++++.++|||||++++..
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 11111 12578899999999999999864
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.2e-11 Score=104.26 Aligned_cols=87 Identities=21% Similarity=0.172 Sum_probs=66.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEe
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s 173 (258)
.+.++.+|||||||+|..+..+++. + ..+|+|+|+++. ...++.+|+.+.+..+++||+|++
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 148 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIV 148 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEE
Confidence 3567789999999999999888763 2 247999998642 124677888876666789999999
Q ss_pred c-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 174 N-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 174 ~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+ +++|++ +|+.|+|||||++++.+.
T Consensus 149 ~~~~~~~~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 149 TAAASTIP------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ccCcchhh------HHHHHhcCcCcEEEEEEc
Confidence 6 566543 589999999999988553
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.6e-12 Score=97.57 Aligned_cols=89 Identities=28% Similarity=0.385 Sum_probs=68.6
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCC--CCCCCeeEEEec--c
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQP--FDNGTFDFEFSN--V 175 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LP--f~d~SFD~V~s~--~ 175 (258)
|.+|||+|||+|..+.++.+.+..+++|+|+++. +..+.++|...++ +++++||+|+++ .
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 4689999999999999888877558999998642 2357888888776 889999999997 2
Q ss_pred ccccC-------ChHHHHHHHHhcccCCcEEEEEec
Q 025071 176 FDHAL-------YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 l~h~~-------~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
..+.. .-..+++++.|+|||||.+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 22211 124678999999999999998865
|
... |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-11 Score=108.34 Aligned_cols=125 Identities=16% Similarity=0.197 Sum_probs=82.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCCc-----ee---eecCCCCCCCCCCeeEEEeccccccCChHH
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPL-----VI---KGDFHAQPFDNGTFDFEFSNVFDHALYPWK 184 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~~-----~~---~aDa~~LPf~d~SFD~V~s~~l~h~~~p~~ 184 (258)
..++.+|||+|||+|..+.++++.|...|+|+|+++.... .. ..+...++..+.+||+|+++...+ ....
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~--~~~~ 194 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILAN--PLLE 194 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHH--HHHH
Confidence 4578899999999999998888888667999999754211 00 011122344444899999973322 1246
Q ss_pred HHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEe
Q 025071 185 FVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRK 251 (258)
Q Consensus 185 ~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K 251 (258)
.++++.++|||||.+++.-... ...+++.+.+.+.|+..+.....-+- ..++++|
T Consensus 195 l~~~~~~~LkpgG~lilsgi~~-----------~~~~~v~~~l~~~Gf~~~~~~~~~~W-~~~~~~~ 249 (250)
T PRK00517 195 LAPDLARLLKPGGRLILSGILE-----------EQADEVLEAYEEAGFTLDEVLERGEW-VALVGKK 249 (250)
T ss_pred HHHHHHHhcCCCcEEEEEECcH-----------hhHHHHHHHHHHCCCEEEEEEEeCCE-EEEEEEe
Confidence 7799999999999999863210 13577888898888765544322122 4566665
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.5e-11 Score=110.15 Aligned_cols=107 Identities=19% Similarity=0.139 Sum_probs=80.3
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec-
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
....++.+|||+|||||..+..++..| ..++|+|+++. ...+.++|+.++|+.+++||+|+++
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dP 256 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDP 256 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECC
Confidence 345678899999999999987776666 47999998642 1246789999999999999999996
Q ss_pred --cc----ccc---CChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 175 --VF----DHA---LYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 175 --~l----~h~---~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
.. ... .....+++++.|+|||||++++.++.. .++.+++++.|+
T Consensus 257 Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--------------~~~~~~~~~~g~ 309 (329)
T TIGR01177 257 PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--------------IDLESLAEDAFR 309 (329)
T ss_pred CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--------------CCHHHHHhhcCc
Confidence 11 111 113678899999999999999887631 234466777666
|
This family is found exclusively in the Archaea. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-10 Score=104.98 Aligned_cols=129 Identities=13% Similarity=0.046 Sum_probs=87.7
Q ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC---------------CCCceeeecCCCCCCCCCCeeEE
Q 025071 108 KQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVP---------------RPPLVIKGDFHAQPFDNGTFDFE 171 (258)
Q Consensus 108 ~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~---------------~~~~~~~aDa~~LPf~d~SFD~V 171 (258)
.+...+.++.+|||||||+|..+..+++. +..+++++|... ....++.+|+.+.++++ +|+|
T Consensus 142 ~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v 219 (306)
T TIGR02716 142 LEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAV 219 (306)
T ss_pred HHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEE
Confidence 33334567789999999999999888765 334799999621 01246788988777764 6998
Q ss_pred Eec-cccccCCh--HHHHHHHHhcccCCcEEEEEec--cccCcCcC--------------CCCCCCChhHHHHHhhcCce
Q 025071 172 FSN-VFDHALYP--WKFVGEIERTLKPAGVCVLHVA--LSRRADKY--------------SANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 172 ~s~-~l~h~~~p--~~~l~Ei~RVLKPGG~lii~v~--~~~~~~~y--------------~~~~~~s~~~l~~lf~~~~~ 232 (258)
++. .++++.+. .+++++++|+|||||++++.-. .......+ +.....+.+++.+++++.|+
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf 299 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGY 299 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCC
Confidence 774 56665443 3588999999999999988732 11111100 01122346889999999999
Q ss_pred EEeeee
Q 025071 233 VAVRKV 238 (258)
Q Consensus 233 ~~v~~v 238 (258)
..+..|
T Consensus 300 ~~v~~~ 305 (306)
T TIGR02716 300 KDVTMV 305 (306)
T ss_pred CeeEec
Confidence 877643
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.8e-11 Score=102.92 Aligned_cols=93 Identities=23% Similarity=0.236 Sum_probs=70.2
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CC-CcEEEEeCCCC---------------CCceeeecCCCCCCCCCCe
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLV-GV-SDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTF 168 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~-~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SF 168 (258)
.+++...+.++.+|||||||+|..+..+++. +. .+|+|+|+++. ...++.+|+...+.+++.|
T Consensus 67 ~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~f 146 (212)
T PRK13942 67 IMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPY 146 (212)
T ss_pred HHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCc
Confidence 3344445678899999999999999888764 32 47999998641 2357888988777788999
Q ss_pred eEEEec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 169 DFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 169 D~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|+|++. ++.+. .+++.+.|||||++++.+.
T Consensus 147 D~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 147 DRIYVTAAGPDI------PKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CEEEECCCcccc------hHHHHHhhCCCcEEEEEEc
Confidence 999985 45443 2578889999999988653
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-11 Score=103.82 Aligned_cols=90 Identities=22% Similarity=0.252 Sum_probs=67.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCCC---CCCCCeeEEEecc
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQP---FDNGTFDFEFSNV 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~LP---f~d~SFD~V~s~~ 175 (258)
+..+|||||||+|..+..+++. +..+++|+|++.. ...++++|+..++ +++++||.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4568999999999999888864 3458999998642 1246788887665 6678999999852
Q ss_pred ccccC---------ChHHHHHHHHhcccCCcEEEEEec
Q 025071 176 FDHAL---------YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 l~h~~---------~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
-+++. ....++++++|+|||||.+++...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 11111 114688999999999999988753
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-10 Score=99.11 Aligned_cols=124 Identities=23% Similarity=0.368 Sum_probs=91.7
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCc-EEEEeCCCC--------------C--CceeeecCCCCCCCCCCeeEEEe-cccc
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSD-SIGIDLVPR--------------P--PLVIKGDFHAQPFDNGTFDFEFS-NVFD 177 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~-v~GvD~s~~--------------~--~~~~~aDa~~LPf~d~SFD~V~s-~~l~ 177 (258)
..+|||+|||+|.+...|++.|+.. .+|+|.|+. + ..+.++|+..-.|..+.||+|+- +.++
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 4499999999999999999988754 999998642 1 34788888877888899999987 3332
Q ss_pred ccC--------ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeec----CCCCe-
Q 025071 178 HAL--------YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVD----GFGLD- 244 (258)
Q Consensus 178 h~~--------~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~----g~~l~- 244 (258)
.+. .+..++.-+.+.|+|||+++|+. |. ++.+|+.+-|.+.++.-+.+|. .|+..
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS--CN----------~T~dELv~~f~~~~f~~~~tvp~ptF~FgG~~ 215 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS--CN----------FTKDELVEEFENFNFEYLSTVPTPTFMFGGSV 215 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEe--cC----------ccHHHHHHHHhcCCeEEEEeeccceEEecccc
Confidence 211 23456788999999999999963 21 2579999999999887666653 22222
Q ss_pred ----EEEEEEe
Q 025071 245 ----TEVVFRK 251 (258)
Q Consensus 245 ----~~~~f~K 251 (258)
+.++|++
T Consensus 216 G~tvt~vaF~~ 226 (227)
T KOG1271|consen 216 GSTVTSVAFLR 226 (227)
T ss_pred ccEEEEEEEec
Confidence 5788865
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.3e-10 Score=96.74 Aligned_cols=106 Identities=18% Similarity=0.156 Sum_probs=75.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCCC---------------CceeeecCCCCCCCCCCeeEEEeccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPRP---------------PLVIKGDFHAQPFDNGTFDFEFSNVF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~d~SFD~V~s~~l 176 (258)
+.++.+|||+|||+|..+..+++.+ ..+|+|+|+++.. ..++.+|+. .++ +++||+|+++..
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~ 106 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGS 106 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCC
Confidence 4578899999999999998887653 3579999987421 234556653 344 368999998632
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
.+ .....++++.++|||||++++.... ..+..++.+++++.|+.
T Consensus 107 ~~--~~~~~l~~~~~~Lk~gG~lv~~~~~-----------~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 107 GG--NLTAIIDWSLAHLHPGGRLVLTFIL-----------LENLHSALAHLEKCGVS 150 (187)
T ss_pred cc--CHHHHHHHHHHhcCCCeEEEEEEec-----------HhhHHHHHHHHHHCCCC
Confidence 11 3466789999999999999885421 11357788888887753
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=103.33 Aligned_cols=119 Identities=14% Similarity=0.127 Sum_probs=85.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------------------CCceeeecCCCCCCCC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------------------PPLVIKGDFHAQPFDN 165 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------------------~~~~~~aDa~~LPf~d 165 (258)
..++++||+.|||.|..+.+|++.|+ +|+|+|+|+. ...+.++|+.+++...
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 44678999999999999999999998 6999998641 1246789999997522
Q ss_pred ---CCeeEEEec-cccccCC--hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCC-CChhHHHHHhhcC-ceEE
Q 025071 166 ---GTFDFEFSN-VFDHALY--PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDL-FSVKPLVKLFRES-ELVA 234 (258)
Q Consensus 166 ---~SFD~V~s~-~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~-~s~~~l~~lf~~~-~~~~ 234 (258)
+.||+|+-. +|++++. ..++++.+.++|+|||.+++.+-...... ..-.+ -+.+++.++|... .+..
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~--~GPPf~v~~~e~~~lf~~~~~i~~ 194 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKS--QTPPYSVTQAELIKNFSAKIKFEL 194 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCC--CCCCCcCCHHHHHHhccCCceEEE
Confidence 689999984 6766652 24678999999999998877643221111 11111 3678999999754 4443
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.5e-10 Score=96.14 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=77.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-c
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
..++.+|||||||+|..+..|++.+. .|+|+|+++. ...+..+| ++..+++||+|++. +
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch
Confidence 34678999999999999999988775 6999998642 12344555 55667899999985 7
Q ss_pred ccccCCh--HHHHHHHHhcccCCcEEEEEeccccC-------c------CcCCCCCCCChhHHHHHhhcCceEE
Q 025071 176 FDHALYP--WKFVGEIERTLKPAGVCVLHVALSRR-------A------DKYSANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 176 l~h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~-------~------~~y~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
++|+.++ ..+++++.+.+++|+.+. ..+.... . ........++..++.+++.+.|+.-
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIFT-FAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEEE-ECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 7787644 357788888775444333 2221100 0 0001123457888999999888653
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.8e-11 Score=104.68 Aligned_cols=102 Identities=20% Similarity=0.214 Sum_probs=83.8
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCCC----------CceeeecCCCCCCCCCCeeEEE
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPRP----------PLVIKGDFHAQPFDNGTFDFEF 172 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~~----------~~~~~aDa~~LPf~d~SFD~V~ 172 (258)
..+|++...+....+|.|+|||+|+.+..|++ .+.+.++|+|-|+.+ ..+.++|+.++- ++..+|+++
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllf 97 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLF 97 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhh
Confidence 44566655566788999999999999999986 466789999987532 247888888775 567899999
Q ss_pred ec-cccccCChHHHHHHHHhcccCCcEEEEEeccc
Q 025071 173 SN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALS 206 (258)
Q Consensus 173 s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~ 206 (258)
+| +|+++++-...+..+.--|.|||.+.+++|.+
T Consensus 98 aNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 98 ANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 97 78888888888999999999999999998854
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-10 Score=98.13 Aligned_cols=108 Identities=19% Similarity=0.185 Sum_probs=77.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCC-CCCCCCCeeEEE
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHA-QPFDNGTFDFEF 172 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~-LPf~d~SFD~V~ 172 (258)
.+.++.+|||+|||+|..+..++.. + ..+|+++|+++. ...++.+|+.+ ++..+++||.|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 4668899999999999998877653 3 347999998642 12356677765 344457899999
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
++. ...++..+++++.|+|||||++++.+.. ..+.+++.+.+++.|+
T Consensus 117 ~~~--~~~~~~~~l~~~~~~LkpgG~lv~~~~~-----------~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 117 IGG--GSEKLKEIISASWEIIKKGGRIVIDAIL-----------LETVNNALSALENIGF 163 (198)
T ss_pred ECC--CcccHHHHHHHHHHHcCCCcEEEEEeec-----------HHHHHHHHHHHHHcCC
Confidence 852 2346788999999999999999875431 1235677777877665
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.1e-10 Score=97.03 Aligned_cols=171 Identities=16% Similarity=0.206 Sum_probs=95.6
Q ss_pred HHHHHHHHhcccChhhHhhhCc-hhHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCC
Q 025071 69 ETYIQHQLNKTLNPKLRAVWTT-RDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLV 147 (258)
Q Consensus 69 ~~~l~~~l~~~l~~~l~~~W~~-~~w~~~~~~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s 147 (258)
.+++++++++ .+-|+. ..|.++.+. ..++.. ...-....++||+|||+|.++..|+... .+++++|++
T Consensus 6 ~~~l~~~la~------~DPW~~~~~~YE~~K~-~~~l~a---aLp~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis 74 (201)
T PF05401_consen 6 YQLLNRELAN------DDPWGFETSWYERRKY-RATLLA---ALPRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDIS 74 (201)
T ss_dssp HHHHHHHHTS------SSGGGTTT-HHHHHHH-HHHHHH---HHTTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-
T ss_pred HHHHHHHhCC------CCCCCCCCCHHHHHHH-HHHHHH---hcCccccceeEecCCCccHHHHHHHHhh-CceEEEeCC
Confidence 3466677654 256865 355544321 222211 1112334689999999999999998874 689999987
Q ss_pred CC-------------CCceeeecCCCCCCCCCCeeEEEec-cccccCCh---HHHHHHHHhcccCCcEEEEEeccccCcC
Q 025071 148 PR-------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYP---WKFVGEIERTLKPAGVCVLHVALSRRAD 210 (258)
Q Consensus 148 ~~-------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p---~~~l~Ei~RVLKPGG~lii~v~~~~~~~ 210 (258)
+. ...+.++|..+ ..++++||+|+.. ++..+.+. ..++..+...|+|||.+++...-...
T Consensus 75 ~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~-- 151 (201)
T PF05401_consen 75 PRALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDAN-- 151 (201)
T ss_dssp HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH--
T ss_pred HHHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCc--
Confidence 42 23467777755 3578999999885 55555432 35789999999999999986431100
Q ss_pred cCCCCCCCChhHHHHHhhcCceEEee--eecCCCCe---EEEEEEeCCc
Q 025071 211 KYSANDLFSVKPLVKLFRESELVAVR--KVDGFGLD---TEVVFRKKKK 254 (258)
Q Consensus 211 ~y~~~~~~s~~~l~~lf~~~~~~~v~--~v~g~~l~---~~~~f~K~~~ 254 (258)
...-.+.++.+.+.++|.+. ++.+. .++|-... -.+.|+|+..
T Consensus 152 c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (201)
T PF05401_consen 152 CRRWGHAAGAETVLEMLQEH-LTEVERVECRGGSPNEDCLLARFRNPVS 199 (201)
T ss_dssp HHHTT-S--HHHHHHHHHHH-SEEEEEEEEE-SSTTSEEEEEEEE--SS
T ss_pred ccccCcccchHHHHHHHHHH-hhheeEEEEcCCCCCCceEeeeecCCcC
Confidence 00123455788999999843 33222 33332222 4778888654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.3e-10 Score=93.21 Aligned_cols=108 Identities=23% Similarity=0.348 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------C---CceeeecCCCCCCCCCCeeEEEec-c
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------P---PLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~---~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
.++.+|||+|||+|..+..+++.+ .+++|+|+++. . ..++.+|..+ ++.+++||+|+++ .
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 467799999999999999988776 58999998642 1 3345666655 5566799999986 1
Q ss_pred ccc---------------------cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEE
Q 025071 176 FDH---------------------ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 176 l~h---------------------~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
+.+ ......+++++.++|||||.+++.++. ....+++.+++.+.|+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~-----------~~~~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS-----------LTGEDEVLEYLEKLGFEA 168 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc-----------cCCHHHHHHHHHHCCCee
Confidence 111 011345789999999999998887642 113477889999888643
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-10 Score=110.07 Aligned_cols=90 Identities=22% Similarity=0.236 Sum_probs=67.9
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCC--CCCCCCeeEEEecc-
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQ--PFDNGTFDFEFSNV- 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~L--Pf~d~SFD~V~s~~- 175 (258)
.+..+||||||+|..+..+++. +...++|+|+++. ...++++|+..+ ++++++||.|+++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 4568999999999999999875 3458999998632 123678888765 68899999999851
Q ss_pred ccccCCh------HHHHHHHHhcccCCcEEEEEec
Q 025071 176 FDHALYP------WKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 l~h~~~p------~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
..|...+ ..+++|++|+|||||.+.+.+.
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 1111111 5789999999999999999754
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-10 Score=100.82 Aligned_cols=124 Identities=24% Similarity=0.302 Sum_probs=95.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC----------CC-------CceeeecCCCC--CCCCCCeeEEEe
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP----------RP-------PLVIKGDFHAQ--PFDNGTFDFEFS 173 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~----------~~-------~~~~~aDa~~L--Pf~d~SFD~V~s 173 (258)
.+.+.+|||.+.|-|..+..-.+.|..+|+.++.++ ++ ..++.||+.+. .|+|+|||+|+-
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 456899999999999999887788876888888543 11 13567787654 589999999998
Q ss_pred c--cccc--cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecC
Q 025071 174 N--VFDH--ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDG 240 (258)
Q Consensus 174 ~--~l~h--~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g 240 (258)
. -|.+ -.....+.+|++|+|||||.++..+.++ +.+|...|+ ..++.+.+++.|+..+..+..
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P--g~ryrG~d~--~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP--GKRYRGLDL--PKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC--CcccccCCh--hHHHHHHHHhcCceeeeeehh
Confidence 4 2322 2355788999999999999999988654 346666666 488999999999998887753
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-10 Score=98.91 Aligned_cols=87 Identities=23% Similarity=0.208 Sum_probs=65.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCC--CcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGV--SDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~--~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
.+.++.+|||||||+|..+..|++... ..|+|+|+++. ...++.+|+...+...+.||+|++.
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 466889999999999999998887532 35999998642 1346778887765556799999985
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
...++ .+++.+.|||||++++.+.
T Consensus 154 ~~~~~~------~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 154 AAGPKI------PEALIDQLKEGGILVMPVG 178 (215)
T ss_pred CCcccc------cHHHHHhcCcCcEEEEEEc
Confidence 44433 3578899999999988654
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=97.58 Aligned_cols=125 Identities=24% Similarity=0.368 Sum_probs=84.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec--
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN-- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~-- 174 (258)
..++.+|||+|||+|..+..++... ...++|+|+++. ...++.+|+.. ++.+++||+|+++
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCC
Confidence 3466799999999999999888753 357999998742 12356677643 4456899999985
Q ss_pred cc-----c--------c------------cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhc
Q 025071 175 VF-----D--------H------------ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRE 229 (258)
Q Consensus 175 ~l-----~--------h------------~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~ 229 (258)
.+ + | ......+++++.++|||||++++..... ..+++.+++.+
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~------------~~~~~~~~l~~ 252 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD------------QGEAVRALLAA 252 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch------------HHHHHHHHHHh
Confidence 11 1 0 0012456788889999999999865311 23668888888
Q ss_pred CceEEeeee-cCCCCeEEEEEE
Q 025071 230 SELVAVRKV-DGFGLDTEVVFR 250 (258)
Q Consensus 230 ~~~~~v~~v-~g~~l~~~~~f~ 250 (258)
.|+..+... +-.+.++.++.+
T Consensus 253 ~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 253 AGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred CCCceeEEecCCCCCceEEEEE
Confidence 887655543 455666655544
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.5e-10 Score=96.91 Aligned_cols=111 Identities=22% Similarity=0.364 Sum_probs=79.3
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec---c
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN---V 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~---~ 175 (258)
.+.+|||+|||+|..+..+++. +...++|+|+++. ...+..+|+.+ ++++++||+|+++ .
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 4568999999999999988874 3358999998642 12467778766 6778999999985 1
Q ss_pred ----ccccC------Ch--------------HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc
Q 025071 176 ----FDHAL------YP--------------WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 176 ----l~h~~------~p--------------~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~ 231 (258)
++++. .| ..+++++.++|||||.+++.... ...+++.+++.+.|
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~------------~~~~~~~~~l~~~g 233 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY------------DQGEAVRALFEAAG 233 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc------------cHHHHHHHHHHhCC
Confidence 11111 11 24678999999999999886531 13467888898888
Q ss_pred eEEeeee
Q 025071 232 LVAVRKV 238 (258)
Q Consensus 232 ~~~v~~v 238 (258)
+..+...
T Consensus 234 f~~v~~~ 240 (251)
T TIGR03534 234 FADVETR 240 (251)
T ss_pred CCceEEE
Confidence 7655543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.14 E-value=9e-10 Score=93.14 Aligned_cols=108 Identities=27% Similarity=0.393 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCC-cEEEEeCCCC--------------C-CceeeecCCCCCCCCCCeeEEEec-ccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVS-DSIGIDLVPR--------------P-PLVIKGDFHAQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~-~v~GvD~s~~--------------~-~~~~~aDa~~LPf~d~SFD~V~s~-~l~ 177 (258)
++.+|||+|||+|..+..+++.+.. +|+++|+++. . ..+..+|..+ +.++++||+|+|| =++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchh
Confidence 5679999999999999999886543 6999998642 1 2355666543 4458999999997 222
Q ss_pred ccC-----ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 178 HAL-----YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 178 h~~-----~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
... ...+++++..+.|||||.+++..... .-..+-+.++|.+.+.+
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~----------~~~~~~l~~~f~~~~~~ 160 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH----------LGYERLLKELFGDVEVV 160 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT----------SCHHHHHHHHHS--EEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeecC----------CChHHHHHHhcCCEEEE
Confidence 222 23567899999999999998765421 11123367777755543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-10 Score=105.03 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC----------------ceeeecCCCCCCCCCCeeEEEeccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP----------------LVIKGDFHAQPFDNGTFDFEFSNVF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~----------------~~~~aDa~~LPf~d~SFD~V~s~~l 176 (258)
..++.+|||+|||+|..+.++++.|..+|+|+|+++... .+..++ ..++.+++||+|+++.+
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecC
Confidence 346789999999999999888888877899999875210 122232 34555789999999743
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcC
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRES 230 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~ 230 (258)
.+ ....++.++.|+|||||++++..... ....++.+.+++.
T Consensus 235 ~~--~l~~ll~~~~~~LkpgG~li~sgi~~-----------~~~~~v~~~~~~~ 275 (288)
T TIGR00406 235 AE--VIKELYPQFSRLVKPGGWLILSGILE-----------TQAQSVCDAYEQG 275 (288)
T ss_pred HH--HHHHHHHHHHHHcCCCcEEEEEeCcH-----------hHHHHHHHHHHcc
Confidence 22 23467899999999999998853211 1246667777653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.3e-11 Score=114.10 Aligned_cols=126 Identities=19% Similarity=0.208 Sum_probs=78.9
Q ss_pred EEEEECCCCCHHHHHHHhcCCCcEEEEeCCC-----CCC----------ceeeecCCCCCCCCCCeeEEEec-c-ccccC
Q 025071 118 KALSIGARVGQEVAALKLVGVSDSIGIDLVP-----RPP----------LVIKGDFHAQPFDNGTFDFEFSN-V-FDHAL 180 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~-----~~~----------~~~~aDa~~LPf~d~SFD~V~s~-~-l~h~~ 180 (258)
.+||||||+|.++.+|.+.++ +.+-+++ ... .+-.....+|||++++||+|.|+ + +.+..
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V---~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~ 196 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNV---TTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHP 196 (506)
T ss_pred EEEeccceeehhHHHHhhCCc---eEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchh
Confidence 699999999999999998764 3333221 111 11122357999999999999995 3 44444
Q ss_pred ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCC-CChhHHHHHhhcCceEEeeeecCCCCeEEEEEEeCCc
Q 025071 181 YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDL-FSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKKKK 254 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~-~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K~~~ 254 (258)
+-..++-|+.|||||||++++.-+... .....+. -.-..+..+.+...+..+.+-+ .+++.||+.+
T Consensus 197 ~~g~~l~evdRvLRpGGyfv~S~ppv~---~r~~~~~~~~~~~~~~l~~~lCW~~va~~~-----~~aIwqKp~~ 263 (506)
T PF03141_consen 197 NDGFLLFEVDRVLRPGGYFVLSGPPVY---QRTDEDLEEEWNAMEDLAKSLCWKKVAEKG-----DTAIWQKPTN 263 (506)
T ss_pred cccceeehhhhhhccCceEEecCCccc---ccchHHHHHHHHHHHHHHHHHHHHHheeeC-----CEEEEeccCC
Confidence 556678899999999999998754221 0001111 1124455666665554444321 1688888554
|
; GO: 0008168 methyltransferase activity |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=102.00 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------------CceeeecCCCCCCCCCCeeEEEec
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------------PLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------------~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
++.+|||+|||+|..+..|++.|. +|+|+|+++.. ..+.++|.+.+ +++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 567999999999999999998875 79999997521 12344554433 6899999985
Q ss_pred -cccccCChH--HHHHHHHhcccCCcEEEEEecccc------C-cCcC---CC---CCCCChhHHHHHhhcCceEE
Q 025071 175 -VFDHALYPW--KFVGEIERTLKPAGVCVLHVALSR------R-ADKY---SA---NDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 175 -~l~h~~~p~--~~l~Ei~RVLKPGG~lii~v~~~~------~-~~~y---~~---~~~~s~~~l~~lf~~~~~~~ 234 (258)
+++|.++.. ..++.+.+ +.+||.++...+... . ...+ .. ..+++.+++.++++++|+.-
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 778876543 34555554 456555443222110 0 0011 11 11347899999999999753
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-09 Score=97.89 Aligned_cols=122 Identities=21% Similarity=0.211 Sum_probs=84.0
Q ss_pred CEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec--cc-
Q 025071 117 SKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN--VF- 176 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~--~l- 176 (258)
.+|||+|||+|..+..++... ...|+|+|+++. ...++++|..+ ++++++||+|+++ .+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 689999999999999888753 357999998742 13466777654 5566689999996 11
Q ss_pred -----------cccC------------ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhh-cCce
Q 025071 177 -----------DHAL------------YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFR-ESEL 232 (258)
Q Consensus 177 -----------~h~~------------~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~-~~~~ 232 (258)
.|-+ ....+++++.++|+|||++++.+... ..+.+.+++. +.++
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~------------q~~~~~~~~~~~~~~ 262 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW------------QQKSLKELLRIKFTW 262 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc------------HHHHHHHHHHhcCCC
Confidence 1111 23456789999999999998876421 1356777787 4566
Q ss_pred EEeeee-cCCCCeEEEEEEe
Q 025071 233 VAVRKV-DGFGLDTEVVFRK 251 (258)
Q Consensus 233 ~~v~~v-~g~~l~~~~~f~K 251 (258)
..+... |-.|.++.++.++
T Consensus 263 ~~~~~~~D~~g~~R~~~~~~ 282 (284)
T TIGR00536 263 YDVENGRDLNGKERVVLGFY 282 (284)
T ss_pred ceeEEecCCCCCceEEEEEe
Confidence 554433 5667777666554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-10 Score=100.12 Aligned_cols=126 Identities=20% Similarity=0.288 Sum_probs=82.0
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC---------------------------Cceeee
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP---------------------------PLVIKG 156 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~---------------------------~~~~~a 156 (258)
+..+.+.....++.+||+.|||.|..+.+|++.|+ +|+|+|+|+.. ..+.++
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 33333333456778999999999999999999997 89999987410 125678
Q ss_pred cCCCCCCCC-CCeeEEEec-cccccC--ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcC
Q 025071 157 DFHAQPFDN-GTFDFEFSN-VFDHAL--YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRES 230 (258)
Q Consensus 157 Da~~LPf~d-~SFD~V~s~-~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~ 230 (258)
|+.+++-++ ++||+|+-. +|+-++ ...++.+.+.++|||||.+++.+-.......-..---.+.+++.++|...
T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~~~ 182 (218)
T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFGPG 182 (218)
T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHTTT
T ss_pred ccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhcCC
Confidence 998888665 489999985 443332 33578899999999999944432222111110111114789999999833
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-10 Score=97.17 Aligned_cols=88 Identities=22% Similarity=0.222 Sum_probs=68.8
Q ss_pred CceeeecCCCCCCCCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCc--------------------
Q 025071 151 PLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA-------------------- 209 (258)
Q Consensus 151 ~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-------------------- 209 (258)
..++++|++++|+++++||+|++. +++|+.++..+++|++|+|||||.+++......+.
T Consensus 28 i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (160)
T PLN02232 28 IEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVAT 107 (160)
T ss_pred eEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhhH
Confidence 357899999999999999999996 78999999999999999999999998763221100
Q ss_pred -----CcC-----CCCCCCChhHHHHHhhcCceEEeeee
Q 025071 210 -----DKY-----SANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 210 -----~~y-----~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
..| +...+++.+++.++++++|+.++...
T Consensus 108 ~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 108 VYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred HhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 011 11234588999999999999877654
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=101.30 Aligned_cols=125 Identities=21% Similarity=0.348 Sum_probs=84.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC------------c--eeeecCCCCCCCC-CCeeEEEecccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP------------L--VIKGDFHAQPFDN-GTFDFEFSNVFD 177 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~------------~--~~~aDa~~LPf~d-~SFD~V~s~~l~ 177 (258)
..++.+|||+|||+|-++.+.++.|...|+|+|+.+... . ....-...+.... +.||+|++|-+-
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 458899999999999999999999988899999865211 0 1111122223334 599999998432
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEe
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRK 251 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K 251 (258)
+.. .+...++.+.|||||++++.--... -.+.+.+.+.+.|+..+.....-+- .++++||
T Consensus 240 ~vl--~~La~~~~~~lkpgg~lIlSGIl~~-----------q~~~V~~a~~~~gf~v~~~~~~~eW-~~i~~kr 299 (300)
T COG2264 240 EVL--VELAPDIKRLLKPGGRLILSGILED-----------QAESVAEAYEQAGFEVVEVLEREEW-VAIVGKR 299 (300)
T ss_pred HHH--HHHHHHHHHHcCCCceEEEEeehHh-----------HHHHHHHHHHhCCCeEeEEEecCCE-EEEEEEc
Confidence 221 3566899999999999999621110 1466888887777766665433222 5666665
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=101.80 Aligned_cols=87 Identities=20% Similarity=0.199 Sum_probs=65.0
Q ss_pred CCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec-ccccc
Q 025071 116 ESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHA 179 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~ 179 (258)
.++|||+|||+|..+..+++.+ ..+|+++|+++. ...+..+|..+ ..+++||+|+|+ -+++.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCCccCC
Confidence 4689999999999999888753 347999998742 12245556543 236799999997 45442
Q ss_pred C-----ChHHHHHHHHhcccCCcEEEEEec
Q 025071 180 L-----YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 180 ~-----~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
. ..+.+++++.|.|||||.+++..+
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2 346789999999999999988653
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=98.84 Aligned_cols=123 Identities=20% Similarity=0.351 Sum_probs=80.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------CceeeecCCCCCCCCCCeeEEEeccccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------PLVIKGDFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------~~~~~aDa~~LPf~d~SFD~V~s~~l~h 178 (258)
..++.+|||+|||+|-++.+.++.|..+|+|+|+.+.. ..+.... ......+.||+|++|-+.+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANILAD 236 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES-HH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCCHH
Confidence 45778999999999999998888998889999997531 1122222 2233458999999983322
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEeC
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKK 252 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K~ 252 (258)
.. ...+..+.++|||||++++.--.. + ..+++.+.+++ |+.-+.....-+- ..+++||+
T Consensus 237 vL--~~l~~~~~~~l~~~G~lIlSGIl~--------~---~~~~v~~a~~~-g~~~~~~~~~~~W-~~l~~~Kk 295 (295)
T PF06325_consen 237 VL--LELAPDIASLLKPGGYLILSGILE--------E---QEDEVIEAYKQ-GFELVEEREEGEW-VALVFKKK 295 (295)
T ss_dssp HH--HHHHHHCHHHEEEEEEEEEEEEEG--------G---GHHHHHHHHHT-TEEEEEEEEETTE-EEEEEEE-
T ss_pred HH--HHHHHHHHHhhCCCCEEEEccccH--------H---HHHHHHHHHHC-CCEEEEEEEECCE-EEEEEEeC
Confidence 21 345678999999999999962111 1 24778888876 8765444322122 56777763
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-09 Score=93.57 Aligned_cols=86 Identities=20% Similarity=0.156 Sum_probs=63.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec-c
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
.+.++.+|||+|||+|..+..+++.+ .+|+++|.++. ...+..+|+.+.....++||+|++. .
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 45678899999999999988887764 47999998632 1245667765432245799999985 4
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++++ .+++.+.|+|||++++.+.
T Consensus 154 ~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chhh------hHHHHHhcCCCcEEEEEEc
Confidence 4443 3578899999999998764
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-09 Score=101.84 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=62.7
Q ss_pred CCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCCC------------------CceeeecCCCCCCCCCCeeEEEec-c
Q 025071 116 ESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPRP------------------PLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~~------------------~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
+++|||+|||+|..+..+++.+ ..+|+++|.++.. ..+..+|+.+ .+++++||+|+|| -
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 4699999999999999888753 4589999987421 1234455433 2355789999997 3
Q ss_pred cccc--C---ChHHHHHHHHhcccCCcEEEEEe
Q 025071 176 FDHA--L---YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 l~h~--~---~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++.. . ..+++++++.|+|||||.+++..
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3221 1 13467899999999999998875
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-09 Score=79.53 Aligned_cols=85 Identities=32% Similarity=0.438 Sum_probs=65.9
Q ss_pred EEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCC-CCCCeeEEEec-cccc-c
Q 025071 118 KALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPF-DNGTFDFEFSN-VFDH-A 179 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf-~d~SFD~V~s~-~l~h-~ 179 (258)
+|+|+|||+|..+..+.+.+..+++++|.++. ...+..+|..+.+. ..++||+|+++ .+++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 48999999999988887644468999998642 12355667666553 56789999996 5565 5
Q ss_pred CChHHHHHHHHhcccCCcEEEEE
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..+...++.+.+.|||||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 67788899999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.1e-10 Score=99.06 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=62.9
Q ss_pred EEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------C-c-----eeeecCCCCCCC--CCCeeEEEeccccccCC
Q 025071 118 KALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------P-L-----VIKGDFHAQPFD--NGTFDFEFSNVFDHALY 181 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------~-~-----~~~aDa~~LPf~--d~SFD~V~s~~l~h~~~ 181 (258)
.++|+|||+|+.+..+++. +.+|+|+|+++.+ + . ....+.+-.++. ++|.|+|+++.--|+.+
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd 114 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD 114 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc
Confidence 7999999999888888876 5689999986421 1 1 112233445555 99999999974446667
Q ss_pred hHHHHHHHHhcccCCc-EEEEEe
Q 025071 182 PWKFVGEIERTLKPAG-VCVLHV 203 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG-~lii~v 203 (258)
-++++++++|||||.| .+++..
T Consensus 115 le~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 115 LERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred hHHHHHHHHHHcCCCCCEEEEEE
Confidence 8899999999999987 555543
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=97.98 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=86.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------------CCceeeecCCCCCC-CCCCeeEEEec--
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR--------------PPLVIKGDFHAQPF-DNGTFDFEFSN-- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf-~d~SFD~V~s~-- 174 (258)
+.++.+|||+|||+|..+..++.. +..+|+|+|+++. ...++++|..+..+ .+++||+|+||
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCC
Confidence 345679999999999999888753 3458999999752 12367788755433 24689999996
Q ss_pred cccc----cC------Ch--------------HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcC
Q 025071 175 VFDH----AL------YP--------------WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRES 230 (258)
Q Consensus 175 ~l~h----~~------~p--------------~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~ 230 (258)
.+.. .. +| .+.++++.+.|+|||.+++.+... ..+.+.+++.+.
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~------------Q~e~V~~ll~~~ 396 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD------------QGAAVRGVLAEN 396 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc------------HHHHHHHHHHHC
Confidence 2211 00 11 245677788999999988765421 247788999888
Q ss_pred ceEEeeee-cCCCCeEEEEEEe
Q 025071 231 ELVAVRKV-DGFGLDTEVVFRK 251 (258)
Q Consensus 231 ~~~~v~~v-~g~~l~~~~~f~K 251 (258)
|+..+... |-.|.++.++.++
T Consensus 397 Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 397 GFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred CCcEEEEEEcCCCCcEEEEEEE
Confidence 86544322 6777788776655
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-08 Score=89.47 Aligned_cols=131 Identities=22% Similarity=0.326 Sum_probs=101.2
Q ss_pred CEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCCceeeecCCCCCC---CCCCeeEEEec-cccccCChH---HHHHHH
Q 025071 117 SKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPF---DNGTFDFEFSN-VFDHALYPW---KFVGEI 189 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~~~~~aDa~~LPf---~d~SFD~V~s~-~l~h~~~p~---~~l~Ei 189 (258)
-++|||||=...+. ....++-+|+.||+++..+.+.+.|+.+.|. ++++||+|.+. +++.+++|. +.++.+
T Consensus 53 lrlLEVGals~~N~--~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~ 130 (219)
T PF11968_consen 53 LRLLEVGALSTDNA--CSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRA 130 (219)
T ss_pred ceEEeecccCCCCc--ccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHH
Confidence 58999998755543 2344555799999998888899999999888 47899999986 889999886 478999
Q ss_pred HhcccCCcE-----EEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEeCCc
Q 025071 190 ERTLKPAGV-----CVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKKKK 254 (258)
Q Consensus 190 ~RVLKPGG~-----lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K~~~ 254 (258)
++.|+|+|. +++..|.+ .....+..+.+.+..++...|+..+.......+ .-+.|||.+.
T Consensus 131 ~~fL~~~g~~~~~~LFlVlP~~----Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl-~y~l~r~~~~ 195 (219)
T PF11968_consen 131 HKFLKPPGLSLFPSLFLVLPLP----CVTNSRYMTEERLREIMESLGFTRVKYKKSKKL-AYWLFRKSGK 195 (219)
T ss_pred HHHhCCCCccCcceEEEEeCch----HhhcccccCHHHHHHHHHhCCcEEEEEEecCeE-EEEEEeecCC
Confidence 999999999 88877632 112233457788999999999999888655555 5777787655
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-09 Score=94.40 Aligned_cols=88 Identities=32% Similarity=0.373 Sum_probs=68.0
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC----------ceeeec-CCCCCCCCCCeeEEEe-cc---ccccC
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP----------LVIKGD-FHAQPFDNGTFDFEFS-NV---FDHAL 180 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~----------~~~~aD-a~~LPf~d~SFD~V~s-~~---l~h~~ 180 (258)
+.-|||||||+|..+..|.+.| ...+|+|+|+.+. .++.+| .+-+||..++||.|++ .+ ++|..
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~ 129 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNAD 129 (270)
T ss_pred CcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccC
Confidence 5679999999999999999888 4799999987532 123333 4789999999999998 33 33322
Q ss_pred ----ChHH----HHHHHHhcccCCcEEEEEec
Q 025071 181 ----YPWK----FVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 181 ----~p~~----~l~Ei~RVLKPGG~lii~v~ 204 (258)
+|.+ ++.-++.+|++|++.++++-
T Consensus 130 ~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 130 KSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred ccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 4543 56789999999999999853
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=93.76 Aligned_cols=105 Identities=19% Similarity=0.273 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec--c
Q 025071 115 NESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN--V 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~--~ 175 (258)
++.+|||+|||+|..+..+++.. ..+|+|+|+++. ...++++|+.+ ++++++||+|+++ .
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 45789999999999999998753 348999998742 12357777643 3456789999996 1
Q ss_pred -----cccc-----CCh--------------HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc
Q 025071 176 -----FDHA-----LYP--------------WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 176 -----l~h~-----~~p--------------~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~ 231 (258)
+.+. .+| ..+++++.++|||||++++.+.. +.+.+.+++.+.+
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-------------~~~~v~~~~~~~~ 266 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-------------SMEALEEAYPDVP 266 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-------------CHHHHHHHHHhCC
Confidence 1111 122 35678999999999999987641 2356778888766
Q ss_pred eE
Q 025071 232 LV 233 (258)
Q Consensus 232 ~~ 233 (258)
+.
T Consensus 267 ~~ 268 (284)
T TIGR03533 267 FT 268 (284)
T ss_pred Cc
Confidence 43
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.7e-09 Score=95.28 Aligned_cols=94 Identities=17% Similarity=0.143 Sum_probs=65.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC--CCcEEEEeCCCC-------------CC---ceeeecCCC-CCCCCCC----ee
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG--VSDSIGIDLVPR-------------PP---LVIKGDFHA-QPFDNGT----FD 169 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g--~~~v~GvD~s~~-------------~~---~~~~aDa~~-LPf~d~S----FD 169 (258)
+.++.+|||+|||||..+..|.+.. ..+++|+|+|+. +. ..+++|+.+ +++..+. ..
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 3567899999999999998887653 247999999752 11 246788875 4554433 23
Q ss_pred EEEec-cccccCC--hHHHHHHHHhcccCCcEEEEEeccc
Q 025071 170 FEFSN-VFDHALY--PWKFVGEIERTLKPAGVCVLHVALS 206 (258)
Q Consensus 170 ~V~s~-~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v~~~ 206 (258)
+++++ .+.|+.. ...++++++++|+|||.+++.+...
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 44444 5555542 3457899999999999999876543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=88.17 Aligned_cols=90 Identities=20% Similarity=0.068 Sum_probs=63.1
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCC-CCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHA-QPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~-LPf~d~SFD~V~s~ 174 (258)
.+.++.+|||+|||+|..+..+++. +...|+|+|+++. ...++.+|+.+ ++.-...+|.++..
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence 3457789999999999998888753 2358999998742 12356677643 33222346776653
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
. ..+...+++++.|+|||||++++...
T Consensus 117 ~---~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 117 G---GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred C---CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 1 22456889999999999999988753
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.5e-08 Score=82.39 Aligned_cols=89 Identities=17% Similarity=0.055 Sum_probs=65.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCeeEEEeccccc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h 178 (258)
.+.++.+|||+|||+|..+..+++.+ .+++|+|+++. ...++.+|+.++++++++||.|+++.--|
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCcc
Confidence 45567899999999999999998875 58999998641 23478899999999988899999973333
Q ss_pred cCChHHHHHHHHhc--ccCCcEEEEEe
Q 025071 179 ALYPWKFVGEIERT--LKPAGVCVLHV 203 (258)
Q Consensus 179 ~~~p~~~l~Ei~RV--LKPGG~lii~v 203 (258)
.. ...+..+.+- +.++|.+++..
T Consensus 89 ~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 89 IS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 32 2333333332 44778887764
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-09 Score=103.30 Aligned_cols=91 Identities=30% Similarity=0.357 Sum_probs=79.3
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
...++.+++|+|||-|....+++..+...++|+|.+.+ ...++.+|+...||+|++||+|.+.
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 34577799999999999999998877678999998642 1236788999999999999999984
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+.+|.+++..+++|++||+||||+.+.-
T Consensus 187 ~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 187 VVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred ecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 8999999999999999999999998885
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=93.52 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=79.3
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEec-cccccCC-
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALY- 181 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~- 181 (258)
.+++|||+|||+|..+..+... +..+|+|+|+++. ...++++|+.+++. +++||+|+++ -+.|...
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence 4579999999999988777653 2358999998752 23477889887763 5789999997 3433211
Q ss_pred -------------------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 182 -------------------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 182 -------------------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
-.+.++...++|+|+|.+.+..+..+ -| +.-.+.++...++++.|++
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~---~y--~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP---YY--DGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc---cc--cccCCHHHHHHHHHhcCcE
Confidence 13566788999999998777654321 12 1123678888999888876
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-08 Score=89.46 Aligned_cols=129 Identities=17% Similarity=0.151 Sum_probs=87.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCCC--CCCCCeeEEEec
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQP--FDNGTFDFEFSN 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~LP--f~d~SFD~V~s~ 174 (258)
...++|||+|||+|..+..+++. ...+++|||+.+. ...++++|+.++. ..-++||+|+||
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 34789999999999999999875 4468999998642 2347788877654 334589999997
Q ss_pred --ccccc----C-------------ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc--eE
Q 025071 175 --VFDHA----L-------------YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE--LV 233 (258)
Q Consensus 175 --~l~h~----~-------------~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~--~~ 233 (258)
.+.-- . +-+..++-..+.|||||.+++..+.. ...++.+++++.+ ..
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e------------rl~ei~~~l~~~~~~~k 190 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE------------RLAEIIELLKSYNLEPK 190 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH------------HHHHHHHHHHhcCCCce
Confidence 22111 1 23456778889999999999976532 3577888888654 44
Q ss_pred EeeeecCCCCe----EEEEEEeCCc
Q 025071 234 AVRKVDGFGLD----TEVVFRKKKK 254 (258)
Q Consensus 234 ~v~~v~g~~l~----~~~~f~K~~~ 254 (258)
++.-|-..... -.+.++|.++
T Consensus 191 ~i~~V~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 191 RIQFVYPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred EEEEecCCCCCcceEEEEEEecCCC
Confidence 55555322222 2566666554
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.1e-08 Score=86.85 Aligned_cols=138 Identities=21% Similarity=0.221 Sum_probs=82.8
Q ss_pred CCCCC-EEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC------------------CCceeeecCCCCCC------CCC
Q 025071 113 LFNES-KALSIGARVGQEVAALKLV-GVSDSIGIDLVPR------------------PPLVIKGDFHAQPF------DNG 166 (258)
Q Consensus 113 l~~~~-~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~------------------~~~~~~aDa~~LPf------~d~ 166 (258)
+.+.+ +||+||||||+.+.++++. ..-.-.-.|.... ++..+......+|. ..+
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 34444 5999999999999988763 2111222232110 11122122222333 357
Q ss_pred CeeEEEeccccccC---ChHHHHHHHHhcccCCcEEEEEeccccCcCcC----------------CCCCCCChhHHHHHh
Q 025071 167 TFDFEFSNVFDHAL---YPWKFVGEIERTLKPAGVCVLHVALSRRADKY----------------SANDLFSVKPLVKLF 227 (258)
Q Consensus 167 SFD~V~s~~l~h~~---~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y----------------~~~~~~s~~~l~~lf 227 (258)
+||+|+|..+-|+. .-+..++++.++|+|||.+++.-|..+.+ .+ +..-+.+.+++.++.
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G-~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA 180 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDG-KFTSESNAAFDASLRSRDPEWGIRDIEDVEALA 180 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCC-EeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHH
Confidence 99999995344443 33456799999999999999975543321 11 112235778899999
Q ss_pred hcCceEEeeeecCCCCeEEEEEEe
Q 025071 228 RESELVAVRKVDGFGLDTEVVFRK 251 (258)
Q Consensus 228 ~~~~~~~v~~v~g~~l~~~~~f~K 251 (258)
.+.|+.-...++=.-=...+||||
T Consensus 181 ~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 181 AAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHCCCccCcccccCCCCeEEEEeC
Confidence 999887666553111125789987
|
The function of this family is unknown. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.8e-08 Score=90.52 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=72.8
Q ss_pred CEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec--c--
Q 025071 117 SKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN--V-- 175 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~--~-- 175 (258)
.+|||+|||+|..+..++.. +..+|+|+|+++. ...++++|+.+ ++++++||+|+++ .
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence 68999999999999988864 3358999998742 12467778643 3346789999986 1
Q ss_pred ---cccc-----CCh--------------HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 176 ---FDHA-----LYP--------------WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 176 ---l~h~-----~~p--------------~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
+.+. .+| ..+++++.++|||||++++.+.. +.+++.++|.+.++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~-------------~~~~~~~~~~~~~~~ 280 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN-------------SRVHLEEAYPDVPFT 280 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc-------------CHHHHHHHHhhCCCE
Confidence 1110 112 35678999999999999986531 124577888877654
Q ss_pred E
Q 025071 234 A 234 (258)
Q Consensus 234 ~ 234 (258)
.
T Consensus 281 ~ 281 (307)
T PRK11805 281 W 281 (307)
T ss_pred E
Confidence 4
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.1e-09 Score=96.06 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=64.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CC-CcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GV-SDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~-~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
.+.++.+|||||||+|..+..+++. +. ..|+|+|+++. ...++.+|+...+.+.++||+|++.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 4567889999999999999888764 21 35999998752 1235678887777677889999985
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
.+++. ...+.++|||||++++.+
T Consensus 157 ~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 VGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CchHHh------HHHHHHhcCCCCEEEEEe
Confidence 44332 245788999999988854
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.9e-09 Score=93.82 Aligned_cols=88 Identities=24% Similarity=0.306 Sum_probs=70.0
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC------ceeeecCCCCCCCCCCeeEEEe-ccccccCChHHHHH
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP------LVIKGDFHAQPFDNGTFDFEFS-NVFDHALYPWKFVG 187 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~------~~~~aDa~~LPf~d~SFD~V~s-~~l~h~~~p~~~l~ 187 (258)
...++||||+|.|..+..++.. +.+|++.+.|+.+. .+.+-+..++.-.+..||+|.| |+++...+|...++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~ 172 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLR 172 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHH
Confidence 3467999999999999999765 56899999885321 1233344445545678999999 79999999999999
Q ss_pred HHHhcccCCcEEEEEe
Q 025071 188 EIERTLKPAGVCVLHV 203 (258)
Q Consensus 188 Ei~RVLKPGG~lii~v 203 (258)
+|++.|+|+|++++.+
T Consensus 173 ~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 173 DIRRALKPNGRLILAV 188 (265)
T ss_pred HHHHHhCCCCEEEEEE
Confidence 9999999999988863
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-08 Score=96.97 Aligned_cols=91 Identities=21% Similarity=0.288 Sum_probs=67.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCC-CcEEEEeCCCC--------------CCceeeecCCCCC--CCCCCeeEEEec-
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGV-SDSIGIDLVPR--------------PPLVIKGDFHAQP--FDNGTFDFEFSN- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~--------------~~~~~~aDa~~LP--f~d~SFD~V~s~- 174 (258)
..++.+|||+|||+|..+..+++.+. ..|+|+|+++. ...++++|+..++ +++++||.|+++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 45788999999999999988877532 48999998752 1246788888765 457899999963
Q ss_pred ------cccc------cCCh----------HHHHHHHHhcccCCcEEEEEe
Q 025071 175 ------VFDH------ALYP----------WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ------~l~h------~~~p----------~~~l~Ei~RVLKPGG~lii~v 203 (258)
++.+ ...+ .+++.++.++|||||++++.+
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1211 1122 257899999999999998864
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.2e-09 Score=94.13 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=66.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------------------CCceeeecCCC-CCCCCCCeeEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR--------------------PPLVIKGDFHA-QPFDNGTFDFE 171 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~--------------------~~~~~~aDa~~-LPf~d~SFD~V 171 (258)
.++.+||+||||+|..+..+.+. +..+|+++|+++. ...++.+|+.. ++..+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45679999999999999988775 5668999998641 11356677654 23356899999
Q ss_pred EeccccccC-----ChHHHHHHHHhcccCCcEEEEEe
Q 025071 172 FSNVFDHAL-----YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 172 ~s~~l~h~~-----~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++...++.. ....+++++.|.|+|||++++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 996433321 12567899999999999998864
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-08 Score=93.72 Aligned_cols=95 Identities=21% Similarity=0.353 Sum_probs=72.7
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------------CCceeeecC------CCCCCC
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------------PPLVIKGDF------HAQPFD 164 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------------~~~~~~aDa------~~LPf~ 164 (258)
..+++..++|+|||-|..+..-.+.|....+|+|++.. ...++.||. ..++++
T Consensus 114 y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 114 YTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred HhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 35677889999999999877666778888999998642 124567764 367788
Q ss_pred CCCeeEEEec-cccc----cCChHHHHHHHHhcccCCcEEEEEeccc
Q 025071 165 NGTFDFEFSN-VFDH----ALYPWKFVGEIERTLKPAGVCVLHVALS 206 (258)
Q Consensus 165 d~SFD~V~s~-~l~h----~~~p~~~l~Ei~RVLKPGG~lii~v~~~ 206 (258)
|-+||+|-|- ++|. ......+++.+++.|||||+++-++|..
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 8889999884 4443 3345568899999999999999998853
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.9e-08 Score=96.92 Aligned_cols=105 Identities=19% Similarity=0.334 Sum_probs=70.7
Q ss_pred CCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec--cc
Q 025071 116 ESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN--VF 176 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~--~l 176 (258)
+.+|||+|||+|..+..++. .+..+|+|+|+++. ...++.+|+.+ ++++++||+|+|| .+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 46899999999999988765 34458999999742 12345666543 3456789999996 11
Q ss_pred cc-----c------CCh--------------HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc
Q 025071 177 DH-----A------LYP--------------WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 177 ~h-----~------~~p--------------~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~ 231 (258)
.+ + .+| ..+++++.++|+|||.+++.+... ..+.+.+++.+.|
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~------------q~~~v~~~~~~~g 285 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK------------QEEAVTQIFLDHG 285 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc------------hHHHHHHHHHhcC
Confidence 11 0 012 235678899999999998865321 2456777777766
Q ss_pred eE
Q 025071 232 LV 233 (258)
Q Consensus 232 ~~ 233 (258)
+.
T Consensus 286 ~~ 287 (506)
T PRK01544 286 YN 287 (506)
T ss_pred CC
Confidence 54
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.1e-08 Score=95.40 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=66.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCC--------------Cce--eeecCCCCCC--CCCCeeEEEe
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRP--------------PLV--IKGDFHAQPF--DNGTFDFEFS 173 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~--------------~~~--~~aDa~~LPf--~d~SFD~V~s 173 (258)
..++.+|||+|||+|..+..+++. +...|+|+|+++.. ..+ ..+|+...++ ++++||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 457889999999999998888763 33479999987531 112 4466665555 6789999986
Q ss_pred c-------cccccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 025071 174 N-------VFDHALY----------------PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 174 ~-------~l~h~~~----------------p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+ .+.+.++ ..+.+.++.|+|||||.++..+
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3 3443332 2468899999999999998864
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-09 Score=95.27 Aligned_cols=118 Identities=16% Similarity=0.136 Sum_probs=83.9
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC----------ceeeecCC-CCC-CCCCCeeEEEec-cccccCC
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP----------LVIKGDFH-AQP-FDNGTFDFEFSN-VFDHALY 181 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~----------~~~~aDa~-~LP-f~d~SFD~V~s~-~l~h~~~ 181 (258)
+-.++||+|||||-....|+..- .+.+|+|+|..+. ...++++. -++ ..++.||+|.+. ++..+-+
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~ 203 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA 203 (287)
T ss_pred ccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcc
Confidence 45789999999999999998763 5799999986432 12344443 223 457899999995 7777667
Q ss_pred hHHHHHHHHhcccCCcEEEEEeccccCcCcC----CCCCCCChhHHHHHhhcCceE
Q 025071 182 PWKFVGEIERTLKPAGVCVLHVALSRRADKY----SANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y----~~~~~~s~~~l~~lf~~~~~~ 233 (258)
-+.++.-+.+.|+|||.+.+.+-+......| +..--.+...+..++...|+.
T Consensus 204 Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~ 259 (287)
T COG4976 204 LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLE 259 (287)
T ss_pred hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCce
Confidence 7778888999999999999986543222222 111114677789999988754
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-08 Score=96.18 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=68.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC---------------CCceeeecCCCCC----CCCCCeeEE
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR---------------PPLVIKGDFHAQP----FDNGTFDFE 171 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~---------------~~~~~~aDa~~LP----f~d~SFD~V 171 (258)
..++.+|||+|||+|..+..+++. + ...|+|+|+++. ...++.+|+..++ +.+++||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 456889999999999999888764 2 247999998642 1246678888876 567899999
Q ss_pred Eec-------cccccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 025071 172 FSN-------VFDHALY----------------PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 172 ~s~-------~l~h~~~----------------p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+++ ++.+.++ ..+.+.++.++|||||+++..+
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 973 3443332 2467899999999999988754
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-07 Score=84.51 Aligned_cols=106 Identities=18% Similarity=0.155 Sum_probs=72.5
Q ss_pred CCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCC------------CceeeecCCC-CCC-CCCCeeEEEec--ccc-
Q 025071 116 ESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRP------------PLVIKGDFHA-QPF-DNGTFDFEFSN--VFD- 177 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~------------~~~~~aDa~~-LPf-~d~SFD~V~s~--~l~- 177 (258)
+.+|||+|||+|..+..+++. +..+|+|+|+++.. ..+.++|..+ ++- ..++||+|++| .+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 458999999999999888753 33479999987521 2467778654 221 13579999997 221
Q ss_pred ----ccC------C--------------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 178 ----HAL------Y--------------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 178 ----h~~------~--------------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
... + ...+++.+.++|||||++++..... ...++.+++++.|+.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~------------~~~~v~~~l~~~g~~ 234 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER------------QAPLAVEAFARAGLI 234 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc------------hHHHHHHHHHHCCCC
Confidence 100 1 1256677789999999999876421 246788888887764
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.2e-08 Score=88.01 Aligned_cols=115 Identities=16% Similarity=0.237 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhc----CCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEec--cc--
Q 025071 115 NESKALSIGARVGQEVAALKLV----GVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSN--VF-- 176 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~----g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~--~l-- 176 (258)
.+.+|||+|||+|.++..+++. +..+|+|+|+++. ...+..+|+...++ +++||+|++| .+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 3679999999999999887653 2347999998642 23478889887765 5799999998 11
Q ss_pred --ccc-------CChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCC------ChhHHHHHhhcCceE
Q 025071 177 --DHA-------LYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLF------SVKPLVKLFRESELV 233 (258)
Q Consensus 177 --~h~-------~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~------s~~~l~~lf~~~~~~ 233 (258)
.+. .....+++.+.|.++||+. ++ |..--+..|+..+.| +-....++.++.|++
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL--P~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-II--PQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLE 196 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee--CcccccCcccCccceeeccCcccHHHHHHHHhcCee
Confidence 111 1245578888997777664 33 433233455544433 335566777777765
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-08 Score=91.11 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=65.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCC-CCCCCCCeeEEEecc
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHA-QPFDNGTFDFEFSNV 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~-LPf~d~SFD~V~s~~ 175 (258)
.++.+|||||||+|..+.++++. +..+++++|+++. ...++.+|+.+ ++-..++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45678999999999999888753 4457999998531 12356777643 222346899999864
Q ss_pred ccccC-----ChHHHHHHHHhcccCCcEEEEEe
Q 025071 176 FDHAL-----YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 l~h~~-----~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++... ....+++++.++|+|||++++.+
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 43221 23678999999999999999854
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5e-08 Score=87.88 Aligned_cols=114 Identities=24% Similarity=0.315 Sum_probs=83.6
Q ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHh-cC-CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeE
Q 025071 109 QRHFLFNESKALSIGARVGQEVAALKL-VG-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDF 170 (258)
Q Consensus 109 ~~~~l~~~~~VLDIGcGtG~~~~~L~~-~g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~ 170 (258)
....+.++++|||.|+|+|.++.+|+. .| ..+|+..|+.+. ......+|..+--+++ .||+
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDa 166 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDA 166 (256)
T ss_pred HHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCE
Confidence 345688999999999999999999985 33 368999997431 1234557777666666 8999
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
|+.. +++|+.++..+.++|||||.+++.+|+-.+ .+...+-+++.|++++..+
T Consensus 167 v~LD----mp~PW~~le~~~~~Lkpgg~~~~y~P~veQ-----------v~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 167 VFLD----LPDPWNVLEHVSDALKPGGVVVVYSPTVEQ-----------VEKTVEALRERGFVDIEAV 219 (256)
T ss_pred EEEc----CCChHHHHHHHHHHhCCCcEEEEEcCCHHH-----------HHHHHHHHHhcCccchhhh
Confidence 9985 468999999999999999999998774321 2334444555566655544
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.76 E-value=4e-08 Score=92.10 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=62.2
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------------------CCceeeecCCC------CCC
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------------------PPLVIKGDFHA------QPF 163 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------------------~~~~~~aDa~~------LPf 163 (258)
++.+|||+|||-|..+.--...+...++|+|++.. ...++.+|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 67899999999888776666667788999998631 11245566542 233
Q ss_pred CCCCeeEEEec-cccccCChH----HHHHHHHhcccCCcEEEEEecc
Q 025071 164 DNGTFDFEFSN-VFDHALYPW----KFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 164 ~d~SFD~V~s~-~l~h~~~p~----~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
....||+|-|- ++|++...+ .+++.+.+.|||||+++.+++.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 34599999994 787766443 4789999999999999999764
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.6e-08 Score=87.56 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=76.1
Q ss_pred CEEEEECCCCCHHHHHHHh-cCC--CcEEEEeCCCCCC-----------c-----ee--eecCCCCCCCCCCeeEEEec-
Q 025071 117 SKALSIGARVGQEVAALKL-VGV--SDSIGIDLVPRPP-----------L-----VI--KGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~-~g~--~~v~GvD~s~~~~-----------~-----~~--~aDa~~LPf~d~SFD~V~s~- 174 (258)
.+||+||||.|+..--+-+ ... -.|.+.|.|+... . +. ..+.-.-|.+.+|+|+|++-
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 3899999999998765543 221 3689999875321 1 11 11222446778999999884
Q ss_pred cccccC--ChHHHHHHHHhcccCCcEEEEEecc-c-----cC------cC-cCCC---C--CCCChhHHHHHhhcCceEE
Q 025071 175 VFDHAL--YPWKFVGEIERTLKPAGVCVLHVAL-S-----RR------AD-KYSA---N--DLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 175 ~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~-~-----~~------~~-~y~~---~--~~~s~~~l~~lf~~~~~~~ 234 (258)
++..+. .-+.++.+++|+|||||.+++---. . |- ++ .|.. . -+++.+++.++|.++|+..
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~ 232 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEE 232 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccch
Confidence 443332 2246889999999999999885211 0 00 00 1211 1 1358899999999998765
Q ss_pred ee
Q 025071 235 VR 236 (258)
Q Consensus 235 v~ 236 (258)
++
T Consensus 233 ~~ 234 (264)
T KOG2361|consen 233 VQ 234 (264)
T ss_pred hc
Confidence 44
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.8e-08 Score=87.76 Aligned_cols=121 Identities=30% Similarity=0.531 Sum_probs=81.9
Q ss_pred EEEEECCCCCHHHHHHHhcCC-CcEEEEeCCCCCC---------------ceeeecCCCCCCCCCCeeEEEec--ccccc
Q 025071 118 KALSIGARVGQEVAALKLVGV-SDSIGIDLVPRPP---------------LVIKGDFHAQPFDNGTFDFEFSN--VFDHA 179 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~~~---------------~~~~aDa~~LPf~d~SFD~V~s~--~l~h~ 179 (258)
+|||+|||+|..+.+++.... .+|+|+|+|+... .++++|..+ +.. +.||+|+|| .+..-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PLR-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-ccC-CceeEEEeCCCCCCCc
Confidence 799999999999999987653 4899999986311 123333211 222 389999998 33221
Q ss_pred ----------CCh--------------HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc-eEE
Q 025071 180 ----------LYP--------------WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE-LVA 234 (258)
Q Consensus 180 ----------~~p--------------~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~-~~~ 234 (258)
.+| .+++.++.+.|+|||.+++..... ..+.+.++|.+.+ +..
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~------------q~~~v~~~~~~~~~~~~ 258 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT------------QGEAVKALFEDTGFFEI 258 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC------------cHHHHHHHHHhcCCceE
Confidence 133 245788999999999999976421 3578999999998 554
Q ss_pred eeee-cCCCCeEEEEEEeC
Q 025071 235 VRKV-DGFGLDTEVVFRKK 252 (258)
Q Consensus 235 v~~v-~g~~l~~~~~f~K~ 252 (258)
+... +.++..+.+..++.
T Consensus 259 v~~~~d~~g~~rv~~~~~~ 277 (280)
T COG2890 259 VETLKDLFGRDRVVLAKLR 277 (280)
T ss_pred EEEEecCCCceEEEEEEec
Confidence 4443 46666666665553
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.75 E-value=3e-08 Score=87.32 Aligned_cols=93 Identities=20% Similarity=0.230 Sum_probs=62.5
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CC-CcEEEEeCCCC---------------CCceeeecCCCCCCCCCCe
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLV-GV-SDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTF 168 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~-~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SF 168 (258)
.+++...+.++.+|||||||+|..+..|+.. |. ..|+++|..+. ...++.+|...---+...|
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apf 142 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPF 142 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SE
T ss_pred HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCc
Confidence 3344445889999999999999999888874 42 35999997531 2346788876433345789
Q ss_pred eEEEec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 169 DFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 169 D~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|.|+++ +....+ .++.+-||+||++++-+.
T Consensus 143 D~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 143 DRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred CEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 999995 554433 467888999999999654
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-07 Score=84.66 Aligned_cols=145 Identities=19% Similarity=0.277 Sum_probs=100.0
Q ss_pred hhhCchhHHHHHHHHHHHHHHHHHhcC----CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------
Q 025071 86 AVWTTRDWERKVRVFSRFFQDLKQRHF----LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------ 149 (258)
Q Consensus 86 ~~W~~~~w~~~~~~~~~~~~~L~~~~~----l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------ 149 (258)
+=|...+-.++-..+..+++.|.+... -....+||--|||.|+++-.++..|+ .|.|.|.|-.
T Consensus 23 RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~ 101 (270)
T PF07942_consen 23 RDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHC 101 (270)
T ss_pred hhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHccc
Confidence 346554445555566666666654321 12356899999999999999999998 7999995310
Q ss_pred ------------------------------C-------------CceeeecCCCCCCCC---CCeeEEEec-cccccCCh
Q 025071 150 ------------------------------P-------------PLVIKGDFHAQPFDN---GTFDFEFSN-VFDHALYP 182 (258)
Q Consensus 150 ------------------------------~-------------~~~~~aDa~~LPf~d---~SFD~V~s~-~l~h~~~p 182 (258)
| .....||+.++.-++ ++||+|+.+ -++-..+-
T Consensus 102 ~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni 181 (270)
T PF07942_consen 102 SQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENI 181 (270)
T ss_pred CCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHH
Confidence 0 013456777766555 799999886 56777778
Q ss_pred HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCC--------C-CChhHHHHHhhcCceEEee
Q 025071 183 WKFVGEIERTLKPAGVCVLHVALSRRADKYSAND--------L-FSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~--------~-~s~~~l~~lf~~~~~~~v~ 236 (258)
-.+++.|+++|||||..+=.-|. .|+..+ + .+.+||..+..+.|+..+.
T Consensus 182 ~~Yi~tI~~lLkpgG~WIN~GPL-----lyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 182 IEYIETIEHLLKPGGYWINFGPL-----LYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred HHHHHHHHHHhccCCEEEecCCc-----cccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 88999999999999944332222 222222 2 5889999999999876444
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.1e-08 Score=93.46 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=65.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCCC---------------CceeeecCCCCCCCCCCeeEEEec-
Q 025071 113 LFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPRP---------------PLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
..++.+|||+|||+|..+..+++. +...|+|+|+++.. ..++++|+..++ ++++||.|++.
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 356789999999999988777652 22479999987521 236778888776 66799999963
Q ss_pred ------ccccc------CC----------hHHHHHHHHhcccCCcEEEEEe
Q 025071 175 ------VFDHA------LY----------PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ------~l~h~------~~----------p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++.+. .. ..+.+.++.++|||||+++..+
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 22211 11 2357899999999999998864
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.9e-08 Score=93.86 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=67.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCCC---------------CceeeecCCCCC-CCCCCeeEEEe
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPRP---------------PLVIKGDFHAQP-FDNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~~---------------~~~~~aDa~~LP-f~d~SFD~V~s 173 (258)
...++.+|||+|||+|..+..+++. +...|+++|+++.. ..+.++|+..++ +.+++||.|++
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 3567889999999999998887764 23479999987421 236678888877 66789999997
Q ss_pred c----c---ccccC----------------ChHHHHHHHHhcccCCcEEEEEe
Q 025071 174 N----V---FDHAL----------------YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 174 ~----~---l~h~~----------------~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+ . +.+-+ ...+.+.++.+.|||||.++..+
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4 1 22111 12456889999999999987753
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.8e-07 Score=78.28 Aligned_cols=105 Identities=20% Similarity=0.151 Sum_probs=75.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC---------------CCceeeecCCCC-CCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR---------------PPLVIKGDFHAQ-PFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~---------------~~~~~~aDa~~L-Pf~d~SFD~V~s~ 174 (258)
.+.++++++|||||||..+...+..+ ..+|+++|.++. ...++.+++.+. + .-.+||.||.+
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~-~~~~~daiFIG 109 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP-DLPSPDAIFIG 109 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc-CCCCCCEEEEC
Confidence 56789999999999999998887544 358999997532 123667776533 3 22279999985
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
. . .-+..++.+...|||||++++...+ +-+.....+++++.|.
T Consensus 110 Gg-~---~i~~ile~~~~~l~~ggrlV~nait-----------lE~~~~a~~~~~~~g~ 153 (187)
T COG2242 110 GG-G---NIEEILEAAWERLKPGGRLVANAIT-----------LETLAKALEALEQLGG 153 (187)
T ss_pred CC-C---CHHHHHHHHHHHcCcCCeEEEEeec-----------HHHHHHHHHHHHHcCC
Confidence 3 2 3467788999999999999997542 1134556777777766
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.5e-08 Score=87.16 Aligned_cols=91 Identities=15% Similarity=0.115 Sum_probs=65.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC---------------CceeeecCCCCCCCCCCeeEEEec-
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP---------------PLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
..++.+|||+|||+|..+..+++. + ...|+++|+++.. ..+..+|+..++...++||.|+++
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 457889999999999999887763 2 2379999987421 235677887777667789999974
Q ss_pred ------cccccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 025071 175 ------VFDHALY----------------PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ------~l~h~~~----------------p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++.+-++ ..+.++++.+.|||||+++..+
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2222111 1247899999999999988753
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-08 Score=90.02 Aligned_cols=88 Identities=26% Similarity=0.326 Sum_probs=67.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC--------CCC-ceeeecCCCCCCCCCCeeEEEec-cccccCC-
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP--------RPP-LVIKGDFHAQPFDNGTFDFEFSN-VFDHALY- 181 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~--------~~~-~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~- 181 (258)
...+..++|+|||.|.... ......++|.|++. ... .++.+|+.++|+.+++||.+++. +++|+..
T Consensus 43 ~~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cCCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 3458899999999997542 11222478888752 123 58899999999999999999994 7788763
Q ss_pred --hHHHHHHHHhcccCCcEEEEEe
Q 025071 182 --PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 182 --p~~~l~Ei~RVLKPGG~lii~v 203 (258)
...+++|+.|+|||||...+.+
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE
Confidence 4568999999999999866654
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-07 Score=91.46 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=64.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCC---------------CCceeeecCCCCC--CCCCCeeEEEe
Q 025071 113 LFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPR---------------PPLVIKGDFHAQP--FDNGTFDFEFS 173 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~---------------~~~~~~aDa~~LP--f~d~SFD~V~s 173 (258)
..++.+|||+|||+|..+..+++. +...|+|+|+++. ...++++|+.+++ ++ ++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 456789999999999999888763 2357999998642 1246778887763 44 78999998
Q ss_pred cc-------ccccC------C----------hHHHHHHHHhcccCCcEEEEE
Q 025071 174 NV-------FDHAL------Y----------PWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~-------l~h~~------~----------p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+. +.+.+ . ...+++++.|+|||||.++..
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 41 22211 1 134689999999999999865
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.5e-07 Score=81.45 Aligned_cols=91 Identities=21% Similarity=0.177 Sum_probs=67.2
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC--------------C-CCceeeecCCCCCCCCCCeeEE
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP--------------R-PPLVIKGDFHAQPFDNGTFDFE 171 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~--------------~-~~~~~~aDa~~LPf~d~SFD~V 171 (258)
+++...+.++.+||+||||+|..+..|++... +|+.+|..+ + ...+.++|...===+..-||.|
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEE
Confidence 33444578899999999999999999998753 899999642 1 2356778865322234789999
Q ss_pred Eec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 172 FSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 172 ~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+.. +...++ +-+.+-|||||++++-+.
T Consensus 143 ~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence 984 666655 356788999999999664
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-08 Score=88.33 Aligned_cols=88 Identities=22% Similarity=0.226 Sum_probs=73.6
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------CC---ceeeecCCCCCCCCCCeeEEEec-cccccCC
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------PP---LVIKGDFHAQPFDNGTFDFEFSN-VFDHALY 181 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------~~---~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~ 181 (258)
...++|||||-|.....|...|+..++-+|.|.. +. ...++|-+.|||.++|||+|++. ++||..+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd 152 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND 152 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence 4579999999999999998888888999997531 11 25678999999999999999996 7888777
Q ss_pred hHHHHHHHHhcccCCcEEEEEe
Q 025071 182 PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG~lii~v 203 (258)
-...+..+...|||+|.++...
T Consensus 153 LPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 153 LPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred CchHHHHHHHhcCCCccchhHH
Confidence 7777889999999999987753
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.2e-07 Score=82.77 Aligned_cols=107 Identities=23% Similarity=0.284 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------------CC-ceeeecCCCCCCCCCCeeEEEec-ccc
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR--------------PP-LVIKGDFHAQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~--------------~~-~~~~aDa~~LPf~d~SFD~V~s~-~l~ 177 (258)
.+.+|||+|||.|-++..|++. +...++-+|.+.. .. .+...|. -.+-++ +||+|+|| =||
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~-~~~v~~-kfd~IisNPPfh 235 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL-YEPVEG-KFDLIISNPPFH 235 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc-cccccc-cccEEEeCCCcc
Confidence 4569999999999999999875 3567899997531 11 2344443 345556 99999998 222
Q ss_pred ccC--C---hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 178 HAL--Y---PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 178 h~~--~---p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
.-. . -++.+++..+.|++||.+.+.... ...| ..-+.++|.+++.+
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~---~l~y-------~~~L~~~Fg~v~~l 286 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVANR---HLPY-------EKKLKELFGNVEVL 286 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC---CCCh-------HHHHHHhcCCEEEE
Confidence 211 1 246789999999999999887531 1111 34567777766544
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-06 Score=85.31 Aligned_cols=135 Identities=13% Similarity=0.165 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCC----CC
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHA----QP 162 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~----LP 162 (258)
.+++.+++.....++.+|||+|||+|..+..|++.+ ..|+|+|+++. ...++++|+.+ ++
T Consensus 284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 284 KMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 344444443334567899999999999999998876 58999998752 12467788753 45
Q ss_pred CCCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhh-cCceEEeeeecCC
Q 025071 163 FDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFR-ESELVAVRKVDGF 241 (258)
Q Consensus 163 f~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~-~~~~~~v~~v~g~ 241 (258)
+.+++||+|+++-=.. .....++.+.+ ++|++.+++..... .+ .+++..+.+ ...+.++..+|=|
T Consensus 363 ~~~~~fD~Vi~dPPr~--g~~~~~~~l~~-~~~~~ivyvSCnp~---------tl--aRDl~~L~~~gY~l~~i~~~DmF 428 (443)
T PRK13168 363 WALGGFDKVLLDPPRA--GAAEVMQALAK-LGPKRIVYVSCNPA---------TL--ARDAGVLVEAGYRLKRAGMLDMF 428 (443)
T ss_pred hhcCCCCEEEECcCCc--ChHHHHHHHHh-cCCCeEEEEEeChH---------Hh--hccHHHHhhCCcEEEEEEEeccC
Confidence 7778999999851000 01244555655 69999888865321 11 233444433 2346677777643
Q ss_pred CC----eEEEEEEe
Q 025071 242 GL----DTEVVFRK 251 (258)
Q Consensus 242 ~l----~~~~~f~K 251 (258)
.- .+.+.++|
T Consensus 429 P~T~HvE~v~lL~r 442 (443)
T PRK13168 429 PHTGHVESMALFER 442 (443)
T ss_pred CCCCcEEEEEEEEe
Confidence 32 24555543
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.5e-07 Score=81.32 Aligned_cols=114 Identities=24% Similarity=0.329 Sum_probs=76.4
Q ss_pred hcCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCCCCCC---CCCe
Q 025071 110 RHFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFD---NGTF 168 (258)
Q Consensus 110 ~~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~---d~SF 168 (258)
...+.+|++||+.|+|+|.++.+|++. | ..+|+..|..+. ...+...|..+--|+ ++.|
T Consensus 35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence 346789999999999999999999863 3 358999997431 123566777654553 3689
Q ss_pred eEEEeccccccCChHHHHHHHHhcc-cCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTL-KPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVL-KPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
|+|+.. +++|+.++..+.++| ||||++++.+|+-.+ +....+.+++.|+.++..+
T Consensus 115 DavfLD----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ-----------v~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 115 DAVFLD----LPDPWEAIPHAKRALKKPGGRICCFSPCIEQ-----------VQKTVEALREHGFTDIETV 170 (247)
T ss_dssp EEEEEE----SSSGGGGHHHHHHHE-EEEEEEEEEESSHHH-----------HHHHHHHHHHTTEEEEEEE
T ss_pred cEEEEe----CCCHHHHHHHHHHHHhcCCceEEEECCCHHH-----------HHHHHHHHHHCCCeeeEEE
Confidence 999985 468999999999999 999999998774211 2334445566787766554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-07 Score=80.96 Aligned_cols=88 Identities=24% Similarity=0.306 Sum_probs=62.6
Q ss_pred CEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCC-CC--CCCCCeeEEEecc--
Q 025071 117 SKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHA-QP--FDNGTFDFEFSNV-- 175 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~-LP--f~d~SFD~V~s~~-- 175 (258)
..+||||||.|..+..++.. +...++|+|+... ...++++|+.. ++ ++++|+|.|+.+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38999999999999988864 4568999998531 22467788876 33 5689999998851
Q ss_pred ----ccccC---ChHHHHHHHHhcccCCcEEEEEec
Q 025071 176 ----FDHAL---YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 ----l~h~~---~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
-.|.. --..++.+++|+|||||.+.+.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 11211 224688999999999999988763
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-07 Score=88.42 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=64.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC----------------------CCceeeecCCC-CCCCCCCe
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR----------------------PPLVIKGDFHA-QPFDNGTF 168 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~----------------------~~~~~~aDa~~-LPf~d~SF 168 (258)
..++.+||+||||+|..+..+.+.+ ..+|++||+++. ...++.+|+.+ ++-.+++|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3466799999999999888777653 468999998641 01245566654 34456789
Q ss_pred eEEEeccccccC------ChHHHHHHHHhcccCCcEEEEEe
Q 025071 169 DFEFSNVFDHAL------YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 169 D~V~s~~l~h~~------~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
|+|++...+... .-..+++++.+.|+|||++++..
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999996322211 12457899999999999988863
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.6e-07 Score=90.37 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=74.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCC-CcEEEEeCCCC----------------------CCceeeecCCC-CCCCCCCee
Q 025071 114 FNESKALSIGARVGQEVAALKLVGV-SDSIGIDLVPR----------------------PPLVIKGDFHA-QPFDNGTFD 169 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~----------------------~~~~~~aDa~~-LPf~d~SFD 169 (258)
+++.+|||||||+|..+.++.+.+. .+|+++|+++. ...++.+|+.+ +.-.+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4678999999999999988877653 68999998531 11356677664 233457999
Q ss_pred EEEecccccc-C-----ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 170 FEFSNVFDHA-L-----YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 170 ~V~s~~l~h~-~-----~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
+|+++.-+.. . ...++++++.+.|||||.+++....+ .+. .....++.+.+++.|+
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~----~~~---~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP----YFA---PKAFWSIEATLEAAGL 437 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc----ccc---hHHHHHHHHHHHHcCC
Confidence 9999632221 1 12457899999999999998874321 011 1123556677777766
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.2e-07 Score=83.85 Aligned_cols=91 Identities=20% Similarity=0.200 Sum_probs=64.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC-------------------CCceeeecCCCC--CCCCCCeeE
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR-------------------PPLVIKGDFHAQ--PFDNGTFDF 170 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~-------------------~~~~~~aDa~~L--Pf~d~SFD~ 170 (258)
..++.+||+||||+|..+.++.+.. ..+|+.+|+++. ...++.+|+... ..++++||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3567899999999999999988763 457888887531 123566775321 123678999
Q ss_pred EEeccccccC-----ChHHHHHHHHhcccCCcEEEEEe
Q 025071 171 EFSNVFDHAL-----YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 171 V~s~~l~h~~-----~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
|++...++.. .-..+++++.+.|+|||+++...
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9996433221 12457899999999999998753
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.2e-07 Score=81.37 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=61.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCCC-------------------CceeeecCCC-CCCCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPRP-------------------PLVIKGDFHA-QPFDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~~-------------------~~~~~aDa~~-LPf~d~SFD~V~ 172 (258)
.++.+||+||||+|..+..+.+.+ ..+++++|+++.. ..++.+|+.+ +.-.+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345699999999999988876654 5679999986421 1233444422 122257999999
Q ss_pred eccccccC-----ChHHHHHHHHhcccCCcEEEEEe
Q 025071 173 SNVFDHAL-----YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 173 s~~l~h~~-----~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+....... ....+++.+.+.|+|||++++..
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 85332211 13567899999999999998863
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.1e-07 Score=83.44 Aligned_cols=97 Identities=18% Similarity=0.103 Sum_probs=73.3
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC------------CC---Cceeee-cCCCCCCCCCCeeE
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP------------RP---PLVIKG-DFHAQPFDNGTFDF 170 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~------------~~---~~~~~a-Da~~LPf~d~SFD~ 170 (258)
+++...+.+|..|||-=||||.++....-.|. +++|.|+.. +. ..+..+ |+..+||++++||+
T Consensus 189 mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 189 MVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred HHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccce
Confidence 34444567899999999999999988777785 899999752 11 113444 99999999999999
Q ss_pred EEec-----cc-cccCC----hHHHHHHHHhcccCCcEEEEEec
Q 025071 171 EFSN-----VF-DHALY----PWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 171 V~s~-----~l-~h~~~----p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|.+. .- -.... -.++++++.+|||+||++++..+
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9994 11 11111 24678999999999999999765
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.6e-07 Score=82.04 Aligned_cols=87 Identities=22% Similarity=0.194 Sum_probs=61.2
Q ss_pred CCEEEEECCCCCHHHHH----HHhc-C----CCcEEEEeCCCC----------C--------------------------
Q 025071 116 ESKALSIGARVGQEVAA----LKLV-G----VSDSIGIDLVPR----------P-------------------------- 150 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~----L~~~-g----~~~v~GvD~s~~----------~-------------------------- 150 (258)
.-+|+..||.||..... |.+. + ..+|+|+|+++. +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 36999999999996533 3332 1 136999998631 0
Q ss_pred ----------CceeeecCCCCCCC-CCCeeEEEe-ccccccCC--hHHHHHHHHhcccCCcEEEEE
Q 025071 151 ----------PLVIKGDFHAQPFD-NGTFDFEFS-NVFDHALY--PWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 151 ----------~~~~~aDa~~LPf~-d~SFD~V~s-~~l~h~~~--p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..+.+.|..+.|++ .+.||+|+| |++.|... ..++++++++.|+|||++++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 01344555554554 678999999 57777643 567899999999999998875
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=64.85 Aligned_cols=85 Identities=33% Similarity=0.470 Sum_probs=60.5
Q ss_pred EEEECCCCCHHHHHHHhcCC--CcEEEEeCCCC-----------C----CceeeecCCC--CCCCC-CCeeEEEeccccc
Q 025071 119 ALSIGARVGQEVAALKLVGV--SDSIGIDLVPR-----------P----PLVIKGDFHA--QPFDN-GTFDFEFSNVFDH 178 (258)
Q Consensus 119 VLDIGcGtG~~~~~L~~~g~--~~v~GvD~s~~-----------~----~~~~~aDa~~--LPf~d-~SFD~V~s~~l~h 178 (258)
++|+|||+|... .+..... ..++|+|.++. . ..+..+|... +|+.+ ..||++.+....|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999965 3333221 36889997631 1 1356666665 89998 5999994444333
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEec
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
...+...+.++.|+|+|||.+++...
T Consensus 131 ~~~~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 131 LLPPAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 33378899999999999999988754
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.6e-06 Score=74.44 Aligned_cols=94 Identities=19% Similarity=0.174 Sum_probs=66.7
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCC--------CCCCceeeecCCCCCCCCCCeeEEEec-cc
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLV--------PRPPLVIKGDFHAQPFDNGTFDFEFSN-VF 176 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s--------~~~~~~~~aDa~~LPf~d~SFD~V~s~-~l 176 (258)
+.+........+|+|||+|+|..+..+.+ .+..+++..|+- .....++.+|+. -|++. +|+++.. ++
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVL 168 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSG
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc--ccceeeehhh
Confidence 33444566677999999999999988875 444578889962 123457788887 56666 9999985 66
Q ss_pred cccCChH--HHHHHHHhcccCC--cEEEEEe
Q 025071 177 DHALYPW--KFVGEIERTLKPA--GVCVLHV 203 (258)
Q Consensus 177 ~h~~~p~--~~l~Ei~RVLKPG--G~lii~v 203 (258)
|++.+.+ +.++.+++.|+|| |+++|.-
T Consensus 169 h~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 6665443 4689999999999 9998874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.7e-07 Score=81.43 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=61.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCCC-C-----CCCCCee
Q 025071 114 FNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHAQ-P-----FDNGTFD 169 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~L-P-----f~d~SFD 169 (258)
.++.+|||+|||+|..+.+++.. + ..+|+++|+++. ...++.+|+.+. + .++++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 35789999999999988777653 2 358999998642 123567776542 2 1256899
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+..+-. .....++.++.+.|||||.+++-
T Consensus 147 ~VfiDa~k--~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 147 FAFVDADK--PNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEEECCCH--HHHHHHHHHHHHhcCCCeEEEEE
Confidence 99985321 12346788999999999988763
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.5e-06 Score=78.10 Aligned_cols=114 Identities=13% Similarity=0.031 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCC-CCCCeeEEEeccccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPF-DNGTFDFEFSNVFDH 178 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf-~d~SFD~V~s~~l~h 178 (258)
++.+|||+|||+|..+..+++.+ .+|+|+|+++. ...++++|+.++.. .++.||+|+++--..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 46899999999999999999877 58999998642 13477888876643 346799999861110
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCC
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGL 243 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l 243 (258)
.. ...+ .++..-++|++.+++..... . -.+++..+ ....+..+..+|=|.-
T Consensus 252 G~-~~~~-~~~l~~~~~~~ivyvsc~p~---------t--~~rd~~~l-~~y~~~~~~~~DmFP~ 302 (315)
T PRK03522 252 GI-GKEL-CDYLSQMAPRFILYSSCNAQ---------T--MAKDLAHL-PGYRIERVQLFDMFPH 302 (315)
T ss_pred Cc-cHHH-HHHHHHcCCCeEEEEECCcc---------c--chhHHhhc-cCcEEEEEEEeccCCC
Confidence 01 1222 23344467877777653211 1 12344444 4556777777764443
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.5e-07 Score=88.09 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=72.1
Q ss_pred CCCCC-EEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------C--CceeeecCCCCCCCCCCeeEEEe-ccc
Q 025071 113 LFNES-KALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------P--PLVIKGDFHAQPFDNGTFDFEFS-NVF 176 (258)
Q Consensus 113 l~~~~-~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------~--~~~~~aDa~~LPf~d~SFD~V~s-~~l 176 (258)
+.+.. ++|-+|||.-.+...+.+.|+..++.+|.|+. . ..+...|...+.|+|+|||+|+. +.+
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtl 124 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTL 124 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcc
Confidence 34445 89999999999999999999999999998742 1 13678999999999999999998 566
Q ss_pred cccCCh----------HHHHHHHHhcccCCcEEEEE
Q 025071 177 DHALYP----------WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 177 ~h~~~p----------~~~l~Ei~RVLKPGG~lii~ 202 (258)
++...+ ...+.|+.|||+|||+.+..
T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 665422 23468999999999986554
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.3e-07 Score=92.76 Aligned_cols=89 Identities=19% Similarity=0.263 Sum_probs=64.2
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------------CCceeeecCCCC-CCCCCCeeEEEec--
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------------PPLVIKGDFHAQ-PFDNGTFDFEFSN-- 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------------~~~~~~aDa~~L-Pf~d~SFD~V~s~-- 174 (258)
++.+|||+|||+|..+.+++..|..+|+++|+++. ...++++|+.+. .-..++||+|+++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 57899999999999999998877667999998642 124567776432 1115789999996
Q ss_pred cccccC----------ChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 VFDHAL----------YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ~l~h~~----------~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
.+.... +-...+..+.++|+|||.+++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 332111 22346788899999999987753
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.7e-06 Score=75.95 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=56.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------Cc---eeeecCCCCCCCC-----CCeeEEEecccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------PL---VIKGDFHAQPFDN-----GTFDFEFSNVFD 177 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------~~---~~~aDa~~LPf~d-----~SFD~V~s~~l~ 177 (258)
..+.+|||+|||||.++..+++.|...|+|+|.++.+ +. +...|+..+..++ ..+|+++.. +
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS-~- 151 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFIS-L- 151 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEee-h-
Confidence 3677899999999999999998887789999987521 11 2223444332222 366766653 1
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
...+..+.+.|+| |.+++.+
T Consensus 152 -----~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 152 -----ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred -----HhHHHHHHHHhCc-CeEEEEc
Confidence 2246789999999 8887765
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.9e-07 Score=83.29 Aligned_cols=87 Identities=18% Similarity=0.246 Sum_probs=62.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec--
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN-- 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~-- 174 (258)
.+-.+..|||||||||.++..-++.|..+|+|||.+.- -..++++.++++-.|-+..|+|+|.
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 34578899999999999999888999889999997531 1235666666555557899999994
Q ss_pred --c--ccccCChHHHHHHHHhcccCCcEEE
Q 025071 175 --V--FDHALYPWKFVGEIERTLKPAGVCV 200 (258)
Q Consensus 175 --~--l~h~~~p~~~l~Ei~RVLKPGG~li 200 (258)
. ++.+.+ .++-.=-|.|+|||.++
T Consensus 137 Gy~Ll~EsMld--sVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLD--SVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhh--hhhhhhhhccCCCceEc
Confidence 2 233333 23333457899999754
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.8e-06 Score=80.18 Aligned_cols=99 Identities=17% Similarity=0.204 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCC----C
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHA----Q 161 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~----L 161 (258)
..+++.+.+...+.++.+|||+|||+|..+..|++.+ ..|+|+|+++. ...++.+|+.+ +
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ 356 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH
Confidence 3444444443334566899999999999999998764 48999998642 12467788754 3
Q ss_pred CCCCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 162 PFDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 162 Pf~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
++++++||+|+.+-=.- --...+++++.+ ++|++.+++.
T Consensus 357 ~~~~~~~D~vi~dPPr~-G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRK-GCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HhcCCCCCEEEECcCCC-CCCHHHHHHHHh-cCCCEEEEEc
Confidence 46677899999851000 002455566665 8999877774
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-06 Score=83.34 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=61.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------------CCceeeecCCCCC--C--CCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------------PPLVIKGDFHAQP--F--DNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------------~~~~~~aDa~~LP--f--~d~SFD~V~ 172 (258)
.++.+|||+|||+|.++.+.+..|..+|+++|+++. ...++++|+.+.- + .+++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 357899999999999887655556668999998641 1236677775431 2 356899999
Q ss_pred ec--cccccC--------ChHHHHHHHHhcccCCcEEEEEe
Q 025071 173 SN--VFDHAL--------YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 173 s~--~l~h~~--------~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++ .+..-. .-...+....++|||||.++...
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 96 322110 11223345789999999988753
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.7e-06 Score=73.49 Aligned_cols=89 Identities=9% Similarity=-0.000 Sum_probs=57.2
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCC-CCCCCCCeeEEEec-ccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHA-QPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~-LPf~d~SFD~V~s~-~l~ 177 (258)
++.+|||+|||+|..+..+...+..+|+++|.++. ...++++|+.+ ++-.+++||+|+++ =+.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 56799999999999997544445568999998642 12356677654 33335679999996 211
Q ss_pred ccCChHHHHHHHHh--cccCCcEEEEEec
Q 025071 178 HALYPWKFVGEIER--TLKPAGVCVLHVA 204 (258)
Q Consensus 178 h~~~p~~~l~Ei~R--VLKPGG~lii~v~ 204 (258)
. .....+++.+.. +|+|+|++++..+
T Consensus 133 ~-g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 133 K-GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred C-ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 1 112233343433 4788898888643
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-06 Score=79.01 Aligned_cols=69 Identities=13% Similarity=0.062 Sum_probs=52.9
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------CCceeeecCCCCCCCCCCeeEEE
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------PPLVIKGDFHAQPFDNGTFDFEF 172 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------~~~~~~aDa~~LPf~d~SFD~V~ 172 (258)
+.+++...+.++.+|||||||+|..+..|++.+. +|+|+|+++. ...++.+|+.++++++-.+|.|+
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv 110 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVV 110 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEE
Confidence 3334333456778999999999999999988764 8999998752 23478899999998764468888
Q ss_pred ec
Q 025071 173 SN 174 (258)
Q Consensus 173 s~ 174 (258)
+|
T Consensus 111 ~N 112 (272)
T PRK00274 111 AN 112 (272)
T ss_pred Ee
Confidence 86
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.3e-06 Score=89.52 Aligned_cols=108 Identities=18% Similarity=0.195 Sum_probs=73.0
Q ss_pred CCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC-------------------------------CCceeeecCCCCCC
Q 025071 116 ESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR-------------------------------PPLVIKGDFHAQPF 163 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~-------------------------------~~~~~~aDa~~LPf 163 (258)
+.+|||+|||+|..+..++... ...|+|+|+++. ...++++|..+. +
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 4689999999999999988653 358999998641 123566776543 3
Q ss_pred CC--CCeeEEEec--ccc-------------cc-------------CCh-----------HHHHHHHHhcccCCcEEEEE
Q 025071 164 DN--GTFDFEFSN--VFD-------------HA-------------LYP-----------WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 164 ~d--~SFD~V~s~--~l~-------------h~-------------~~p-----------~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+ ..||+|+|| .+. |- .+. .+.+.+..++|||||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 33 369999997 221 10 001 45678899999999999987
Q ss_pred eccccCcCcCCCCCCCChhHHH-HHhhcCceEEee
Q 025071 203 VALSRRADKYSANDLFSVKPLV-KLFRESELVAVR 236 (258)
Q Consensus 203 v~~~~~~~~y~~~~~~s~~~l~-~lf~~~~~~~v~ 236 (258)
+... -.+.+. ++|++.|+..+.
T Consensus 278 iG~~------------q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 278 MGGR------------PGQAVCERLFERRGFRITK 300 (1082)
T ss_pred ECcc------------HHHHHHHHHHHHCCCCeeE
Confidence 6421 135677 588877754433
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.6e-06 Score=73.88 Aligned_cols=124 Identities=21% Similarity=0.300 Sum_probs=77.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------C-----CceeeecCCCCCCCCCCeeEEEec-cccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------P-----PLVIKGDFHAQPFDNGTFDFEFSN-VFDH 178 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------~-----~~~~~aDa~~LPf~d~SFD~V~s~-~l~h 178 (258)
...++||+|||.|+.+..|--.-+..|--+|..+. . ..+.+...+++--+.+++|+|++. ++.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 34689999999999998654322567777775421 0 123333444444456799999996 8888
Q ss_pred cCChH--HHHHHHHhcccCCcEEEEEeccccCc-CcCCCCC--C-CChhHHHHHhhcCceEEeeee
Q 025071 179 ALYPW--KFVGEIERTLKPAGVCVLHVALSRRA-DKYSAND--L-FSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 179 ~~~p~--~~l~Ei~RVLKPGG~lii~v~~~~~~-~~y~~~~--~-~s~~~l~~lf~~~~~~~v~~v 238 (258)
+.|.+ .+++.+...|+|||.+++=.+.+..+ +.|...| + .+.+.+.++|+++|+.-+...
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 88654 67899999999999999865444332 1333332 2 477889999999998766644
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.2e-06 Score=76.49 Aligned_cols=88 Identities=22% Similarity=0.262 Sum_probs=63.1
Q ss_pred CEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC--------------C-CCceeeecCCCC---CCCCCCeeEEEecc--
Q 025071 117 SKALSIGARVGQEVAALKLV-GVSDSIGIDLVP--------------R-PPLVIKGDFHAQ---PFDNGTFDFEFSNV-- 175 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~--------------~-~~~~~~aDa~~L---Pf~d~SFD~V~s~~-- 175 (258)
..+||||||.|.....+|+. +....+|||+.. . ...+++.|+..+ =++++|.|-|+.+-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 58999999999999999874 445799999742 1 223566776543 24667999998751
Q ss_pred ----ccccC---ChHHHHHHHHhcccCCcEEEEEec
Q 025071 176 ----FDHAL---YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 ----l~h~~---~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
-.|.. -...+++++.|+|||||.+.+.+.
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 12211 124678999999999999999753
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.2e-06 Score=76.27 Aligned_cols=66 Identities=23% Similarity=0.229 Sum_probs=51.1
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCeeEEE
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFDFEF 172 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD~V~ 172 (258)
.+++...+.++.+|||||||+|..+..+.+.+ .+|+|+|+++. ...++++|+.+++++ .||.|+
T Consensus 20 ~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv 96 (258)
T PRK14896 20 RIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVV 96 (258)
T ss_pred HHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEE
Confidence 33433345677899999999999999998875 48999998631 134788999998876 489999
Q ss_pred ec
Q 025071 173 SN 174 (258)
Q Consensus 173 s~ 174 (258)
+|
T Consensus 97 ~N 98 (258)
T PRK14896 97 SN 98 (258)
T ss_pred Ec
Confidence 97
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.5e-06 Score=75.80 Aligned_cols=139 Identities=19% Similarity=0.271 Sum_probs=83.6
Q ss_pred CCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC-------------------C-------------C----------
Q 025071 115 NESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR-------------------P-------------P---------- 151 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~-------------------~-------------~---------- 151 (258)
.+..+|||||-.|.++..+++ .|...++|+||.+. . .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 356799999999999999987 57778999997421 0 0
Q ss_pred -------------ceeeecCCCCCCCCCCeeEEEec------cccccCC-hHHHHHHHHhcccCCcEEEEEecccc----
Q 025071 152 -------------LVIKGDFHAQPFDNGTFDFEFSN------VFDHALY-PWKFVGEIERTLKPAGVCVLHVALSR---- 207 (258)
Q Consensus 152 -------------~~~~aDa~~LPf~d~SFD~V~s~------~l~h~~~-p~~~l~Ei~RVLKPGG~lii~v~~~~---- 207 (258)
..+....+-|-+....||+|+|- ++.|..+ -.++++.|+|.|.|||++++. |++-
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE-PQpWksY~ 216 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE-PQPWKSYK 216 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc-CCchHHHH
Confidence 00111111224456789999983 4555443 346889999999999999985 3321
Q ss_pred ----CcCcCC---CCCCCChhHHHHHhhcC--ceEEeeee------cCCCCe-EEEEEEeCCc
Q 025071 208 ----RADKYS---ANDLFSVKPLVKLFRES--ELVAVRKV------DGFGLD-TEVVFRKKKK 254 (258)
Q Consensus 208 ----~~~~y~---~~~~~s~~~l~~lf~~~--~~~~v~~v------~g~~l~-~~~~f~K~~~ 254 (258)
...... .+.....+....++.+. ++..+... ..-+.+ +..+|+|++.
T Consensus 217 kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~~~~skgf~R~i~~y~Kk~~ 279 (288)
T KOG2899|consen 217 KAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIVSAASKGFDRPILLYRKKLH 279 (288)
T ss_pred HHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccccccccccCccccceeeeeeccCC
Confidence 000111 12224566677777655 33322222 122333 5788888554
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.22 E-value=5e-06 Score=72.61 Aligned_cols=89 Identities=22% Similarity=0.253 Sum_probs=53.7
Q ss_pred CCCEEEEECCCCCHHHHHH----Hh-----cC-CCcEEEEeCCCC-----------------------------------
Q 025071 115 NESKALSIGARVGQEVAAL----KL-----VG-VSDSIGIDLVPR----------------------------------- 149 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L----~~-----~g-~~~v~GvD~s~~----------------------------------- 149 (258)
..-+|+..||+||.....| .+ .+ .-+++|+|+++.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999965333 33 11 126999998631
Q ss_pred --------CCceeeecCCCCCCCCCCeeEEEe-ccccccCCh--HHHHHHHHhcccCCcEEEEEe
Q 025071 150 --------PPLVIKGDFHAQPFDNGTFDFEFS-NVFDHALYP--WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 150 --------~~~~~~aDa~~LPf~d~SFD~V~s-~~l~h~~~p--~~~l~Ei~RVLKPGG~lii~v 203 (258)
...+.+.|..+.+...+.||+|+| |++-++..+ .++++.+++.|+|||++++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 012455566664445679999999 677666533 468899999999999999953
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.6e-06 Score=73.03 Aligned_cols=67 Identities=24% Similarity=0.273 Sum_probs=50.4
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCee--
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFD-- 169 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD-- 169 (258)
+.+++.....++.+|||||||+|..+..|++.+. .++|+|+++. ...++.+|+.++|++ +||
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~ 95 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQ 95 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCc
Confidence 3444433455778999999999999999998764 6999998642 124678899998886 566
Q ss_pred -EEEec
Q 025071 170 -FEFSN 174 (258)
Q Consensus 170 -~V~s~ 174 (258)
.|++|
T Consensus 96 ~~vvsN 101 (253)
T TIGR00755 96 LKVVSN 101 (253)
T ss_pred ceEEEc
Confidence 77776
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.15 E-value=3e-05 Score=73.74 Aligned_cols=112 Identities=11% Similarity=0.021 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCC-CCCCeeEEEec-ccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPF-DNGTFDFEFSN-VFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf-~d~SFD~V~s~-~l~ 177 (258)
++.+|||+|||+|.++..++..+ ..|+|+|+++. ...+.++|+.+..- ..++||+|+.+ =-.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 45799999999999999888766 58999998642 12367777754321 12469999986 101
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCC
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFG 242 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~ 242 (258)
. -...+++.+. -++|++.+++..... .+ .+.+..+ ....+.++..+|=|.
T Consensus 312 G--~~~~~l~~l~-~~~p~~ivyvsc~p~---------Tl--aRDl~~L-~gy~l~~~~~~DmFP 361 (374)
T TIGR02085 312 G--IGKELCDYLS-QMAPKFILYSSCNAQ---------TM--AKDIAEL-SGYQIERVQLFDMFP 361 (374)
T ss_pred C--CcHHHHHHHH-hcCCCeEEEEEeCHH---------HH--HHHHHHh-cCceEEEEEEeccCC
Confidence 1 1134455554 479999888864311 11 2445555 445567777776443
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.5e-05 Score=77.65 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=57.5
Q ss_pred CCEEEEECCCCCHHHHHHHhcC-----CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 116 ESKALSIGARVGQEVAALKLVG-----VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g-----~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
+..|||||||+|-++....+.| ..+|++|+.++. ...++.+|.+++..+. ..|+|+|.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 4689999999999986554433 358999997642 2347889999887765 89999995
Q ss_pred ---c-ccccCChHHHHHHHHhcccCCcEEE
Q 025071 175 ---V-FDHALYPWKFVGEIERTLKPAGVCV 200 (258)
Q Consensus 175 ---~-l~h~~~p~~~l~Ei~RVLKPGG~li 200 (258)
+ .++-..|+ .+....|.|||||+++
T Consensus 266 lLGsfg~nEl~pE-~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPE-CLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHH-HHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHH-HHHHHHhhcCCCCEEe
Confidence 2 23434455 5788899999998653
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.9e-06 Score=71.84 Aligned_cols=89 Identities=25% Similarity=0.327 Sum_probs=54.5
Q ss_pred CCEEEEECCCCCHHHHHHHhcC--CCcEEEEeCCCCC---C-ceeeecCCC----------CCCCCCCeeEEEecc-cc-
Q 025071 116 ESKALSIGARVGQEVAALKLVG--VSDSIGIDLVPRP---P-LVIKGDFHA----------QPFDNGTFDFEFSNV-FD- 177 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g--~~~v~GvD~s~~~---~-~~~~aDa~~----------LPf~d~SFD~V~s~~-l~- 177 (258)
+.+|||+||++|.++..+.+.+ ...|+|+|+.+.. . ...++|..+ ++-..+.||+|+|.. ..
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~ 103 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPNV 103 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE------
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceeccccccCC
Confidence 4899999999999999998876 4589999987651 1 223333221 111127999999952 11
Q ss_pred ---ccCChH-------HHHHHHHhcccCCcEEEEEec
Q 025071 178 ---HALYPW-------KFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 178 ---h~~~p~-------~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+..+.. ..+.=+.+.|||||.+++-+-
T Consensus 104 ~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 104 SGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp -SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 111221 123334467999998888653
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.3e-05 Score=70.17 Aligned_cols=88 Identities=15% Similarity=0.234 Sum_probs=61.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCC-CC-C----CCCCe
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHA-QP-F----DNGTF 168 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~-LP-f----~d~SF 168 (258)
..++.+|||||||+|..+.+++.. + ...++++|.++. ...++.+|+.+ || + .+++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 346789999999999999988762 2 236999998642 12356676643 22 1 24689
Q ss_pred eEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+|+..+-. .+-..+++++.+.|+|||.+++-
T Consensus 196 D~VFIDa~K--~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVDADK--RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEECCCH--HHHHHHHHHHHHhcCCCcEEEEe
Confidence 999985311 12345678999999999998874
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.3e-05 Score=66.64 Aligned_cols=120 Identities=20% Similarity=0.285 Sum_probs=79.2
Q ss_pred CCEEEEECCCCCHHHHHHH-hcCCCcEEEEeCCCCCCc--e--eeecCCCCCC------CCCCeeEEEe-ccccccC---
Q 025071 116 ESKALSIGARVGQEVAALK-LVGVSDSIGIDLVPRPPL--V--IKGDFHAQPF------DNGTFDFEFS-NVFDHAL--- 180 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~-~~g~~~v~GvD~s~~~~~--~--~~aDa~~LPf------~d~SFD~V~s-~~l~h~~--- 180 (258)
+++++-+|...= +...++ +.|.++|..|+.++.... + ....+....| -.++||++.| ++++|.-
T Consensus 2 ~~~g~V~GS~~P-wvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLGR 80 (177)
T PF03269_consen 2 GKSGLVVGSMQP-WVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGR 80 (177)
T ss_pred CceEEEEecCCc-hhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHHHHHHHhhccchhhheechhccccccc
Confidence 456777776633 222222 356677888885432110 0 0011111112 2478999988 4787752
Q ss_pred -----Ch---HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEee
Q 025071 181 -----YP---WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 181 -----~p---~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
|| .+++.++.++|||||.+++.+|.....-.|...++|+...+.-+|...+++...
T Consensus 81 YGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~tf 144 (177)
T PF03269_consen 81 YGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDTF 144 (177)
T ss_pred cCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEEEeee
Confidence 33 357789999999999999999977655567778899999999999999888654
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.2e-05 Score=65.59 Aligned_cols=97 Identities=22% Similarity=0.179 Sum_probs=66.4
Q ss_pred HHHHHHHhcCCCCCC-EEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC---------------CCceeeecCCCCCCCC
Q 025071 103 FFQDLKQRHFLFNES-KALSIGARVGQEVAALKL-VGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDN 165 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~-~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d 165 (258)
+++.+.-...+.... +++|||+|.|.-+.-|+- .+..+++-+|.... ...++.+.+++ +-..
T Consensus 35 i~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~ 113 (184)
T PF02527_consen 35 ILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYR 113 (184)
T ss_dssp HHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTT
T ss_pred HHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccC
Confidence 333343334444444 899999999998877764 33457999996531 23467777777 6678
Q ss_pred CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 166 GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++||+|++.++. .....+.-+.+.|||||.+++.-
T Consensus 114 ~~fd~v~aRAv~---~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 114 ESFDVVTARAVA---PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp T-EEEEEEESSS---SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCccEEEeehhc---CHHHHHHHHHHhcCCCCEEEEEc
Confidence 899999997654 34567778888999999988863
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.99 E-value=8e-05 Score=65.55 Aligned_cols=93 Identities=20% Similarity=0.267 Sum_probs=63.1
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhc-CC-CcEEEEeCCCCC----CceeeecCCCCCC--------CCCCeeEEEec--
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLV-GV-SDSIGIDLVPRP----PLVIKGDFHAQPF--------DNGTFDFEFSN-- 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~-g~-~~v~GvD~s~~~----~~~~~aDa~~LPf--------~d~SFD~V~s~-- 174 (258)
..+.++..|+|+||-+|.++..+++. |. ..|+|+|+.+-. ..++++|+..=+. ....+|+|+|.
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~a 120 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMA 120 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCC
Confidence 45678899999999999999988764 32 249999987643 3467888764442 34457999984
Q ss_pred -------cccccCC--h-HHHHHHHHhcccCCcEEEEEe
Q 025071 175 -------VFDHALY--P-WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 -------~l~h~~~--p-~~~l~Ei~RVLKPGG~lii~v 203 (258)
..+|... - ..++.=+.++|+|||.+++-+
T Consensus 121 p~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 121 PNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred CCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 1233221 1 123344456999999998854
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.5e-05 Score=66.05 Aligned_cols=91 Identities=22% Similarity=0.213 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhc--CCC--------cEEEEeCCCC----------------CCceeeecCCCCCCC
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLV--GVS--------DSIGIDLVPR----------------PPLVIKGDFHAQPFD 164 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~--g~~--------~v~GvD~s~~----------------~~~~~~aDa~~LPf~ 164 (258)
....++..+||--||+|.+..+.+.. ... .++|.|+++. ...+.++|+.++|+.
T Consensus 24 a~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~ 103 (179)
T PF01170_consen 24 AGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLP 103 (179)
T ss_dssp TT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGT
T ss_pred hCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccc
Confidence 34567789999999999987655432 222 2889998642 124678899999999
Q ss_pred CCCeeEEEec---ccccc--CCh----HHHHHHHHhcccCCcEEEEE
Q 025071 165 NGTFDFEFSN---VFDHA--LYP----WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 165 d~SFD~V~s~---~l~h~--~~p----~~~l~Ei~RVLKPGG~lii~ 202 (258)
++++|.|+++ ..... .+. ..+++|+.|+|+| ..++++
T Consensus 104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~ 149 (179)
T PF01170_consen 104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLT 149 (179)
T ss_dssp TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence 9999999996 11110 011 2457999999999 444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.1e-06 Score=76.38 Aligned_cols=125 Identities=14% Similarity=0.191 Sum_probs=68.9
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-----------C------Cce-eeecCCCCC----CCCCCeeEE
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-----------P------PLV-IKGDFHAQP----FDNGTFDFE 171 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-----------~------~~~-~~aDa~~LP----f~d~SFD~V 171 (258)
.+.+|||||||+|.+...|+.. ...+++|+|+++. . ..+ .+.|...+. .+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4579999999999887776542 2247999998642 1 112 122322221 246799999
Q ss_pred Eec--cccccCC----hHHHHHHH----------------HhcccCCcEEEEEeccccCcCcCC---------CCCCCCh
Q 025071 172 FSN--VFDHALY----PWKFVGEI----------------ERTLKPAGVCVLHVALSRRADKYS---------ANDLFSV 220 (258)
Q Consensus 172 ~s~--~l~h~~~----p~~~l~Ei----------------~RVLKPGG~lii~v~~~~~~~~y~---------~~~~~s~ 220 (258)
+|| .+..... ..+-.+.+ .+.+-+||.+.++.+.-.....+. ...--++
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l 273 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENL 273 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCH
Confidence 998 2222111 11111122 234457777655533221111110 0111278
Q ss_pred hHHHHHhhcCceEEeeeec
Q 025071 221 KPLVKLFRESELVAVRKVD 239 (258)
Q Consensus 221 ~~l~~lf~~~~~~~v~~v~ 239 (258)
+.+.+.+++.|...+..+.
T Consensus 274 ~~l~~~L~~~~~~~~~~~e 292 (321)
T PRK11727 274 PPLYRALKKVGAVEVKTIE 292 (321)
T ss_pred HHHHHHHHHcCCceEEEEE
Confidence 8999999999887666654
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=2e-05 Score=77.92 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=63.2
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCCC--CCCCCeeEEEeccc
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQP--FDNGTFDFEFSNVF 176 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~LP--f~d~SFD~V~s~~l 176 (258)
.+..+||||||.|.....++.. ....++|+|+... ...++..|+..+. |+++|+|.|+.+.=
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 4568999999999999888864 4457999997531 1123445553222 78999999988511
Q ss_pred ------cccC---ChHHHHHHHHhcccCCcEEEEEec
Q 025071 177 ------DHAL---YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 177 ------~h~~---~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
.|.. -...++++++|+|||||.+.+.+.
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 1211 124678999999999999998653
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.3e-05 Score=68.25 Aligned_cols=98 Identities=20% Similarity=0.278 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHh-cC--CCcEEEEeCCC-------------------------CC
Q 025071 99 VFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKL-VG--VSDSIGIDLVP-------------------------RP 150 (258)
Q Consensus 99 ~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~-~g--~~~v~GvD~s~-------------------------~~ 150 (258)
.++.+++.|.. .+.+|.+.||+|.|+|.++..++. .| ...++|||..+ ..
T Consensus 68 mha~~le~L~~--~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 68 MHATALEYLDD--HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHHHH--hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 34555555532 367899999999999999876663 22 12458988421 11
Q ss_pred CceeeecCCCCCCCCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 151 PLVIKGDFHAQPFDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 151 ~~~~~aDa~~LPf~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
..++++|....--+.+.||.|.+++ ..++..+|+..-|||||.+++-+
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGA-----aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGA-----AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEcc-----CccccHHHHHHhhccCCeEEEee
Confidence 2467889888777889999999962 11233478889999999998854
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.3e-05 Score=63.70 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=46.3
Q ss_pred CCCEEEEECCCCCH-HHHHHHhcCCCcEEEEeCCCCC--------CceeeecCCCCCCC-CCCeeEEEe
Q 025071 115 NESKALSIGARVGQ-EVAALKLVGVSDSIGIDLVPRP--------PLVIKGDFHAQPFD-NGTFDFEFS 173 (258)
Q Consensus 115 ~~~~VLDIGcGtG~-~~~~L~~~g~~~v~GvD~s~~~--------~~~~~aDa~~LPf~-d~SFD~V~s 173 (258)
++.+|||||||+|. .+..|++.|. +|+|+|+++.. ..++++|..+-+++ -+.+|+|.+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys 83 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS 83 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE
Confidence 45789999999996 8889998886 89999998642 24778888766654 367899998
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.5e-05 Score=71.22 Aligned_cols=68 Identities=25% Similarity=0.374 Sum_probs=50.9
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCC
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGT 167 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~S 167 (258)
.+.+++...+.++.+|||||||+|..+..|.+.+ .+|+|+|+++. ...++.+|+.+.+++ .
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~ 101 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--Y 101 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--c
Confidence 3344444456678899999999999999988765 47999998631 124678888776654 6
Q ss_pred eeEEEec
Q 025071 168 FDFEFSN 174 (258)
Q Consensus 168 FD~V~s~ 174 (258)
||.|++|
T Consensus 102 ~d~VvaN 108 (294)
T PTZ00338 102 FDVCVAN 108 (294)
T ss_pred cCEEEec
Confidence 8999987
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.6e-05 Score=71.72 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=62.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------------CCceeeecCCC-CCCCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------------PPLVIKGDFHA-QPFDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------------~~~~~~aDa~~-LPf~d~SFD~V~ 172 (258)
.++.+||.||+|.|..+.++.+. +..+|+.+|+++. ...++.+|+.+ +.-.+++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 35679999999999999877664 4567999998531 11355666543 233467999999
Q ss_pred ecccccc-------CChHHHHH-HHHhcccCCcEEEEEe
Q 025071 173 SNVFDHA-------LYPWKFVG-EIERTLKPAGVCVLHV 203 (258)
Q Consensus 173 s~~l~h~-------~~p~~~l~-Ei~RVLKPGG~lii~v 203 (258)
+...+.. ..-..+++ .+.+.|+|||++++..
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9643321 11245677 8999999999988764
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.1e-05 Score=71.38 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=63.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEecccccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNVFDHA 179 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h~ 179 (258)
.+..|||||||+|.+....+..|..+|++|+.++- ...++.|..+++.++ +..|++++.-+..+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhh
Confidence 56789999999999998888889889999997631 223667777777666 46899999633333
Q ss_pred CChHHHH---HHHHhcccCCcEEEEEe
Q 025071 180 LYPWKFV---GEIERTLKPAGVCVLHV 203 (258)
Q Consensus 180 ~~p~~~l---~Ei~RVLKPGG~lii~v 203 (258)
..-++.+ -...|.|||.|.++=++
T Consensus 256 L~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 3333332 24669999999886554
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.86 E-value=5e-05 Score=66.74 Aligned_cols=86 Identities=24% Similarity=0.355 Sum_probs=59.9
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCC-CC-C----CCCCeeE
Q 025071 115 NESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHA-QP-F----DNGTFDF 170 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~-LP-f----~d~SFD~ 170 (258)
++.+||+|||++|..+.++++. + ..+|+.+|.++. ...++.+|+.+ +| + +.+.||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 5679999999999999999863 2 258999998642 12356676642 12 1 1358999
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+..+-- .+-..++..+.+.|+|||.+++-
T Consensus 125 VFiDa~K--~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 125 VFIDADK--RNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEESTG--GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcccc--cchhhHHHHHhhhccCCeEEEEc
Confidence 9985311 12345678899999999999885
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.4e-05 Score=63.95 Aligned_cols=89 Identities=9% Similarity=-0.053 Sum_probs=57.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCC-CC-C-CCC-CeeEEEec
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHA-QP-F-DNG-TFDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~-LP-f-~d~-SFD~V~s~ 174 (258)
.+.+|||++||+|.++.++...|...|+++|.++. ...++++|+.+ +. + ..+ .||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 57899999999999999988888778999998642 12356677633 22 1 222 47888885
Q ss_pred -cccccCChHHHHHHH--HhcccCCcEEEEEec
Q 025071 175 -VFDHALYPWKFVGEI--ERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei--~RVLKPGG~lii~v~ 204 (258)
-+.. ......+.-+ ...|++||.+++...
T Consensus 129 PPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 1211 1123333333 347899998887643
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.2e-05 Score=65.07 Aligned_cols=58 Identities=24% Similarity=0.384 Sum_probs=45.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
-.+..|+|+|||||.++...+-.|...|+|+|+.+. ...++++|+... +..||.|++|
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimN 115 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMN 115 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEEC
Confidence 367789999999999998888889889999998653 124667777654 3568888887
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.5e-05 Score=67.24 Aligned_cols=87 Identities=21% Similarity=0.270 Sum_probs=60.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC----------------Cceee-ecCCC-CC-CCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP----------------PLVIK-GDFHA-QP-FDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~----------------~~~~~-aDa~~-LP-f~d~SFD~V~ 172 (258)
..+++||+||++.|..+.+++.. + ..+++.+|.++.. ..++. +|+.+ +. +.+++||+||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 46789999999999999988752 3 3479999986421 12333 34321 11 5679999999
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..+ .-. +-..++.++.+.|+|||.+++-
T Consensus 138 IDa-dK~-~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 138 IDA-DKA-DYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EeC-Chh-hCHHHHHHHHHHhCCCcEEEEe
Confidence 842 111 2245789999999999999884
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00018 Score=66.06 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=60.3
Q ss_pred CCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCCCC----------------cee----eec-CCCCCCCCCCeeEEE
Q 025071 115 NESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPRPP----------------LVI----KGD-FHAQPFDNGTFDFEF 172 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~~~----------------~~~----~aD-a~~LPf~d~SFD~V~ 172 (258)
.+..+||+|||+|..+..+.. .+...|+++|.++... .++ ..| ....|..++..|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 456899999999999887764 4555799999875311 122 222 234456689999999
Q ss_pred ec--cccccC-----------ChH--------------HHHHHHHhcccCCcEEEEEec
Q 025071 173 SN--VFDHAL-----------YPW--------------KFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 173 s~--~l~h~~-----------~p~--------------~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|| .+.+-. .|. .+..=+.|.|+|||.+.+.+.
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 97 332211 121 234567899999999998754
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00018 Score=65.82 Aligned_cols=89 Identities=19% Similarity=0.155 Sum_probs=58.7
Q ss_pred CCCEEEEECCCCCHHHH----HHHhcC------CCcEEEEeCCC----------CC------------------------
Q 025071 115 NESKALSIGARVGQEVA----ALKLVG------VSDSIGIDLVP----------RP------------------------ 150 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~----~L~~~g------~~~v~GvD~s~----------~~------------------------ 150 (258)
..-+|+..||+||.... .|.+.+ .-.|+|.|++. ++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 35689999999999643 333432 13689999852 11
Q ss_pred ----------CceeeecCCCCCCCCCCeeEEEe-ccccccCC--hHHHHHHHHhcccCCcEEEEEe
Q 025071 151 ----------PLVIKGDFHAQPFDNGTFDFEFS-NVFDHALY--PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 151 ----------~~~~~aDa~~LPf~d~SFD~V~s-~~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v 203 (258)
..+.+.|...-++..+.||+|+| |++-.+.. ..+++..++..|+|||++++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 01223333333324456999999 66655543 3568899999999999999953
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00013 Score=62.00 Aligned_cols=92 Identities=23% Similarity=0.266 Sum_probs=55.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CC--ceeeecCCC-C--C-CCCCCeeE
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PP--LVIKGDFHA-Q--P-FDNGTFDF 170 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~--~~~~aDa~~-L--P-f~d~SFD~ 170 (258)
...+.+||++|||+|-.+..++.. +..+|+..|..+. .. .+..-|=.+ . + .+.++||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 346789999999999999888887 6678999997531 00 111111100 0 1 23468999
Q ss_pred EEec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 171 EFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 171 V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|+.+ ++..-..-...++=+.+.|+|+|.+++...
T Consensus 123 IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9985 444334445677889999999999666543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00021 Score=70.12 Aligned_cols=142 Identities=18% Similarity=0.238 Sum_probs=86.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCC--CEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC--CCC----cee---ee--
Q 025071 90 TRDWERKVRVFSRFFQDLKQRHFLFNE--SKALSIGARVGQEVAALKLVGVSDSIGIDLVP--RPP----LVI---KG-- 156 (258)
Q Consensus 90 ~~~w~~~~~~~~~~~~~L~~~~~l~~~--~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~--~~~----~~~---~a-- 156 (258)
+.-|..++..|-.+.... +..+ ..|+|+.+|.|.++.+|.+.+ |.-+...+ .+. .+. .|
T Consensus 343 t~~Wk~~V~~Y~~l~~~~-----i~~~~iRNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydRGLIG~y 414 (506)
T PF03141_consen 343 TKHWKKRVSHYKKLLGLA-----IKWGRIRNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDRGLIGVY 414 (506)
T ss_pred HHHHHHHHHHHHHhhccc-----ccccceeeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhcccchhc
Confidence 356777777665544311 2222 369999999999999998765 33333221 111 111 11
Q ss_pred --cCCCCCCCCCCeeEEEec-cccccC---ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcC
Q 025071 157 --DFHAQPFDNGTFDFEFSN-VFDHAL---YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRES 230 (258)
Q Consensus 157 --Da~~LPf~d~SFD~V~s~-~l~h~~---~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~ 230 (258)
=.+..|+=+.++|+|.++ .|.+.. +-..++-||-|+|+|||.+++--. ..-..++..++++.
T Consensus 415 hDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~------------~~vl~~v~~i~~~l 482 (506)
T PF03141_consen 415 HDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT------------VDVLEKVKKIAKSL 482 (506)
T ss_pred cchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc------------HHHHHHHHHHHHhC
Confidence 135677778999999996 443332 456678899999999999998421 11257788888888
Q ss_pred ceEEeeee--cC-CCCeEEEEEEe
Q 025071 231 ELVAVRKV--DG-FGLDTEVVFRK 251 (258)
Q Consensus 231 ~~~~v~~v--~g-~~l~~~~~f~K 251 (258)
.+...... +| ++-++.++-+|
T Consensus 483 rW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 483 RWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred cceEEEEecCCCCCCCceEEEEEC
Confidence 76533322 23 22335555554
|
; GO: 0008168 methyltransferase activity |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0002 Score=67.61 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=61.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------CceeeecCCCCCCCCCCeeEEEeccccccCChH
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------PLVIKGDFHAQPFDNGTFDFEFSNVFDHALYPW 183 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------~~~~~aDa~~LPf~d~SFD~V~s~~l~h~~~p~ 183 (258)
.+.++.++||+||++|.++..|.+.|. .|+|||..+-. .....+|.....-+.+.+|+++|.+.+ .|.
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P~ 283 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE---KPA 283 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc---CHH
Confidence 356889999999999999999999986 89999965422 123455544432236789999996443 588
Q ss_pred HHHHHHHhcccCC
Q 025071 184 KFVGEIERTLKPA 196 (258)
Q Consensus 184 ~~l~Ei~RVLKPG 196 (258)
+.++=|.+.|..|
T Consensus 284 rva~lm~~Wl~~g 296 (357)
T PRK11760 284 RVAELMAQWLVNG 296 (357)
T ss_pred HHHHHHHHHHhcC
Confidence 8888888888776
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.8e-05 Score=67.55 Aligned_cols=95 Identities=23% Similarity=0.264 Sum_probs=51.3
Q ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHH-hcCCCcEEEEeCCCC------------------------CCceeeecCCCCC
Q 025071 108 KQRHFLFNESKALSIGARVGQEVAALK-LVGVSDSIGIDLVPR------------------------PPLVIKGDFHAQP 162 (258)
Q Consensus 108 ~~~~~l~~~~~VLDIGcGtG~~~~~L~-~~g~~~v~GvD~s~~------------------------~~~~~~aDa~~LP 162 (258)
++...+.++...+|+|||.|+.....+ ..++..++||++.+. +..+..+|+.+.+
T Consensus 35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 35 LDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp HHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred HHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence 333456788999999999999876554 357777999998531 1123456655444
Q ss_pred CCC---CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 163 FDN---GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 163 f~d---~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+.+ ..-|+|++|...--++-...+.++..-||||-+++-+
T Consensus 115 ~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 115 FVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred hHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 321 3468999963322112234568888899998776543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=1.5e-05 Score=67.51 Aligned_cols=79 Identities=24% Similarity=0.314 Sum_probs=54.2
Q ss_pred EEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC-ceeeecCCCCCCCCCCeeEEEec-cccccCCh--HHHHHHHHhccc
Q 025071 119 ALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP-LVIKGDFHAQPFDNGTFDFEFSN-VFDHALYP--WKFVGEIERTLK 194 (258)
Q Consensus 119 VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~-~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p--~~~l~Ei~RVLK 194 (258)
.+-||||.=+.- -|+ +-+|....+. ..++-.....+|.|+|.|+|.+. +++|+... ..+++|++|+||
T Consensus 6 kv~ig~G~~r~n-----pgW---i~~d~ed~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lr 77 (185)
T COG4627 6 KVKIGAGGKRVN-----PGW---IITDVEDRPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLR 77 (185)
T ss_pred EEEEeccccccC-----CCc---eeeehhcccccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 578999964321 122 2344432221 22222345689999999999995 78887643 357899999999
Q ss_pred CCcEEEEEecc
Q 025071 195 PAGVCVLHVAL 205 (258)
Q Consensus 195 PGG~lii~v~~ 205 (258)
|||++-+.+|.
T Consensus 78 p~G~LriAvPd 88 (185)
T COG4627 78 PGGKLRIAVPD 88 (185)
T ss_pred cCcEEEEEcCC
Confidence 99999999875
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00017 Score=70.87 Aligned_cols=90 Identities=14% Similarity=0.126 Sum_probs=62.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC---------------CceeeecCCCCC-CCCCCeeEEEec
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP---------------PLVIKGDFHAQP-FDNGTFDFEFSN 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~---------------~~~~~aDa~~LP-f~d~SFD~V~s~ 174 (258)
..++.+|||++||+|.-+..+++. + ...++++|+++.. ..+...|+..++ ...+.||.|+..
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 467899999999999998888763 2 2479999987531 124556766553 334689999953
Q ss_pred -------cccccC------Ch----------HHHHHHHHhcccCCcEEEEE
Q 025071 175 -------VFDHAL------YP----------WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 -------~l~h~~------~p----------~~~l~Ei~RVLKPGG~lii~ 202 (258)
++..-+ .+ .+.+..+.+.|||||+++..
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 233211 11 34678889999999988664
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00013 Score=69.71 Aligned_cols=84 Identities=21% Similarity=0.230 Sum_probs=62.1
Q ss_pred CCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCCC---------------CceeeecCCCCCCCCCCeeEEEecccccc
Q 025071 116 ESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPRP---------------PLVIKGDFHAQPFDNGTFDFEFSNVFDHA 179 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~d~SFD~V~s~~l~h~ 179 (258)
+.+|||++||+|..+..++. .+...|+++|+++.. ..+.++|+..+....+.||+|+.+-+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 46899999999999988865 455589999987421 12567777654322467999998632
Q ss_pred CChHHHHHHHHhcccCCcEEEEE
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
-.|..++....+.++|||+++++
T Consensus 135 Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEE
Confidence 23567777777889999999998
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00024 Score=65.20 Aligned_cols=137 Identities=21% Similarity=0.208 Sum_probs=76.7
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHh--------cCCCcEEEEeCCCCC-----------------CceeeecCCCCCCC--
Q 025071 112 FLFNESKALSIGARVGQEVAALKL--------VGVSDSIGIDLVPRP-----------------PLVIKGDFHAQPFD-- 164 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~--------~g~~~v~GvD~s~~~-----------------~~~~~aDa~~LPf~-- 164 (258)
...++.+|+|-+||+|.+..++.+ .....++|+|+++.. ..+..+|....+..
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 345667899999999998766544 133579999986421 12455665544433
Q ss_pred CCCeeEEEec---ccc-c----c-CC-------------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhH
Q 025071 165 NGTFDFEFSN---VFD-H----A-LY-------------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKP 222 (258)
Q Consensus 165 d~SFD~V~s~---~l~-h----~-~~-------------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~ 222 (258)
.+.||+|+++ ... + . .+ ...++..+.+.||+||++++.+|..- -+. .. ....
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~---L~~-~~--~~~~ 196 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGF---LFS-SS--SEKK 196 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHH---HHG-ST--HHHH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchh---hhc-cc--hHHH
Confidence 5799999997 211 1 0 00 12467889999999999988887421 000 00 1245
Q ss_pred HHHHh-hcCceEEeeeec-----CCCCeE-EEEEEeCCc
Q 025071 223 LVKLF-RESELVAVRKVD-----GFGLDT-EVVFRKKKK 254 (258)
Q Consensus 223 l~~lf-~~~~~~~v~~v~-----g~~l~~-~~~f~K~~~ 254 (258)
+.+.+ +++.+..+-... +.+.++ .++|+|...
T Consensus 197 iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 197 IRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp HHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred HHHHHHhhchhhEEeecccceecccCcCceEEEEeeccc
Confidence 65554 444444444442 233333 788888653
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=4e-05 Score=67.85 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=59.8
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC------ceeeecCCCCCCCCCCeeEEEe-ccccccCChHHHHHH
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP------LVIKGDFHAQPFDNGTFDFEFS-NVFDHALYPWKFVGE 188 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~------~~~~aDa~~LPf~d~SFD~V~s-~~l~h~~~p~~~l~E 188 (258)
+.++||+|+|.|..+..++.. +.+|++.++|.-+. .+-+-.+.++--.|=.||+|.| +.++-..+|-+.++.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL~D 191 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLLED 191 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHHHH
Confidence 468999999999988777643 34577777653110 1111112222223446999999 688888899999999
Q ss_pred HHhcccC-CcEEEEE
Q 025071 189 IERTLKP-AGVCVLH 202 (258)
Q Consensus 189 i~RVLKP-GG~lii~ 202 (258)
|+-||+| +|++++.
T Consensus 192 i~~vl~psngrviva 206 (288)
T KOG3987|consen 192 IHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHhccCCCcEEEE
Confidence 9999999 8987765
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00025 Score=62.16 Aligned_cols=85 Identities=21% Similarity=0.231 Sum_probs=55.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCC----------------CceeeecCCCCCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRP----------------PLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~----------------~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
.+.++..|+|+-||.|.++..+++. ....|+++|+++.. .....+|+..++- ++.||-|+++
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~ 176 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMN 176 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence 3568899999999999999888873 24579999987531 2357889887766 8899999996
Q ss_pred cccccCChHHHHHHHHhcccCCcEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCV 200 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~li 200 (258)
...+. ..++.++.+.+|+||++-
T Consensus 177 lp~~~---~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 177 LPESS---LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -TSSG---GGGHHHHHHHEEEEEEEE
T ss_pred ChHHH---HHHHHHHHHHhcCCcEEE
Confidence 33222 246788999999999763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00058 Score=63.69 Aligned_cols=150 Identities=19% Similarity=0.325 Sum_probs=89.3
Q ss_pred hhhCchhHHHHHHHHHHHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------
Q 025071 86 AVWTTRDWERKVRVFSRFFQDLKQRH----FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------ 149 (258)
Q Consensus 86 ~~W~~~~w~~~~~~~~~~~~~L~~~~----~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------ 149 (258)
+-|.+..-.++-..+..++..|...- .....-+||--|||.|+++..|+..|+ .+-|-+.|-.
T Consensus 117 RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~ 195 (369)
T KOG2798|consen 117 RDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYC 195 (369)
T ss_pred HHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhh
Confidence 33555444555555556666554321 112245899999999999999998886 4655553200
Q ss_pred --------------------------C---C--------------ceeeecCCCC---CCCCCCeeEEEec-cccccCCh
Q 025071 150 --------------------------P---P--------------LVIKGDFHAQ---PFDNGTFDFEFSN-VFDHALYP 182 (258)
Q Consensus 150 --------------------------~---~--------------~~~~aDa~~L---Pf~d~SFD~V~s~-~l~h~~~p 182 (258)
+ + ....||+.+. +=..++||+|+.+ -++...+-
T Consensus 196 ~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~Ni 275 (369)
T KOG2798|consen 196 KQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNI 275 (369)
T ss_pred ccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHH
Confidence 0 0 0122443321 1123579999875 45666667
Q ss_pred HHHHHHHHhcccCCcEEEEEeccccC-cCcCC-CCCC---CChhHHHHHhhcCceEEee
Q 025071 183 WKFVGEIERTLKPAGVCVLHVALSRR-ADKYS-ANDL---FSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v~~~~~-~~~y~-~~~~---~s~~~l~~lf~~~~~~~v~ 236 (258)
-.+++-|..+|||||+.+=.-|.--+ .+.+. .+.+ .+.+++..+.+..|+..++
T Consensus 276 leYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 276 LEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred HHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 78899999999999987654332111 11111 1111 4788999999888876444
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0042 Score=57.53 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=86.2
Q ss_pred CCCEEEEECCCCCHHHH-HHHhcCC--CcEEEEeCCCCC----------------CceeeecCCCC-CCC--CCCeeEEE
Q 025071 115 NESKALSIGARVGQEVA-ALKLVGV--SDSIGIDLVPRP----------------PLVIKGDFHAQ-PFD--NGTFDFEF 172 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~-~L~~~g~--~~v~GvD~s~~~----------------~~~~~aDa~~L-Pf~--d~SFD~V~ 172 (258)
.+-+||||+||.|+... ++.+.+. ..|.-.|.++.. ..+.++|+..- .++ +-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 45699999999999754 5555442 568888876421 14677776431 011 23457776
Q ss_pred e-ccccccCChH---HHHHHHHhcccCCcEEEEEe-ccccCc---------CcC-CC--CCCCChhHHHHHhhcCceEEe
Q 025071 173 S-NVFDHALYPW---KFVGEIERTLKPAGVCVLHV-ALSRRA---------DKY-SA--NDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 173 s-~~l~h~~~p~---~~l~Ei~RVLKPGG~lii~v-~~~~~~---------~~y-~~--~~~~s~~~l~~lf~~~~~~~v 235 (258)
. +.++-+.|-. ..++-+.+.+.|||+++.+- |.+++- ++. .. ....|-.|+.+|+..+|+.++
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 5 4566666543 35788999999999998862 222211 111 01 122588999999999999876
Q ss_pred e-eecCCCCeEEEE
Q 025071 236 R-KVDGFGLDTEVV 248 (258)
Q Consensus 236 ~-~v~g~~l~~~~~ 248 (258)
. .+|.+|..|.-.
T Consensus 295 ~q~ID~~GIFTVSl 308 (311)
T PF12147_consen 295 DQRIDEWGIFTVSL 308 (311)
T ss_pred hheeccCCceEEEe
Confidence 6 458889876433
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00046 Score=62.82 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCC-Ce
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNG-TF 168 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~-SF 168 (258)
+++.+++...+.++..||+||+|.|.++..|.+.+. .|+++++.+. ...++.+|+...+|++. .+
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~ 96 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQP 96 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCC
Confidence 345555555566788999999999999999998874 6999997531 13478899999999875 68
Q ss_pred eEEEec
Q 025071 169 DFEFSN 174 (258)
Q Consensus 169 D~V~s~ 174 (258)
+.|++|
T Consensus 97 ~~vVaN 102 (259)
T COG0030 97 YKVVAN 102 (259)
T ss_pred CEEEEc
Confidence 899987
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0013 Score=56.41 Aligned_cols=91 Identities=19% Similarity=0.161 Sum_probs=67.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCC--CcEEEEeCCCC----------CCceeeecCCCCC-----CCCCCeeEEEecc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGV--SDSIGIDLVPR----------PPLVIKGDFHAQP-----FDNGTFDFEFSNV 175 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~--~~v~GvD~s~~----------~~~~~~aDa~~LP-----f~d~SFD~V~s~~ 175 (258)
...|.-||++|.|||-++.++-+.|. ..+++++.++. ...++.||+..+- +.+.-||.|+|+.
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~l 125 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGL 125 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecc
Confidence 44567899999999999999888774 46889997642 2347788887776 6789999999961
Q ss_pred -ccccC--ChHHHHHHHHhcccCCcEEEEEe
Q 025071 176 -FDHAL--YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 -l~h~~--~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+-.++ ..-+.++++..-|.+||.++...
T Consensus 126 Pll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 126 PLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred ccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 22222 22356788888999999887753
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00027 Score=64.50 Aligned_cols=82 Identities=13% Similarity=0.040 Sum_probs=59.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------C--------C--ceeeecCCCCCCCCCCeeEEEec
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------P--------P--LVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------~--------~--~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
+++.+||=||-|.|..++.+.+.. .+|+-||+.+. | + .++. ... .-..++||+|+..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEEEc
Confidence 567899999999999999988775 37888887531 0 1 1111 111 1123789999996
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++ .+..+++.++|.|+|||.++.+.
T Consensus 147 s~----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----CChHHHHHHHHhcCCCcEEEECC
Confidence 43 45678899999999999999974
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0018 Score=61.25 Aligned_cols=119 Identities=12% Similarity=0.042 Sum_probs=68.9
Q ss_pred CEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCC-C-------C---C-----C
Q 025071 117 SKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQ-P-------F---D-----N 165 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~L-P-------f---~-----d 165 (258)
.+|||+|||+|.++..|++.. ..|+|+|+++. ...++++|+.++ + + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 479999999999999888754 58999998642 123566776542 1 1 1 1
Q ss_pred CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCC--
Q 025071 166 GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGL-- 243 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l-- 243 (258)
..||+|+..==..-. -..+++. +++|++++++..... .+ .+++..+.....+..+..+|-|.-
T Consensus 278 ~~~d~v~lDPPR~G~-~~~~l~~---l~~~~~ivYvsC~p~---------tl--aRDl~~L~~~Y~l~~v~~~DmFP~T~ 342 (353)
T TIGR02143 278 YNCSTIFVDPPRAGL-DPDTCKL---VQAYERILYISCNPE---------TL--KANLEQLSETHRVERFALFDQFPYTH 342 (353)
T ss_pred CCCCEEEECCCCCCC-cHHHHHH---HHcCCcEEEEEcCHH---------HH--HHHHHHHhcCcEEEEEEEcccCCCCC
Confidence 237999884000000 1233333 345888888864311 11 355666654456667777764333
Q ss_pred --eEEEEEEe
Q 025071 244 --DTEVVFRK 251 (258)
Q Consensus 244 --~~~~~f~K 251 (258)
.+.+.+++
T Consensus 343 HvE~v~lL~r 352 (353)
T TIGR02143 343 HMECGVLLER 352 (353)
T ss_pred cEEEEEEEEe
Confidence 24555543
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00042 Score=63.01 Aligned_cols=117 Identities=20% Similarity=0.228 Sum_probs=68.2
Q ss_pred CCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC------------------------------C-------------
Q 025071 115 NESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR------------------------------P------------- 150 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~------------------------------~------------- 150 (258)
.+.++||||||+--. ..|.. .-+.+++..|.++. .
T Consensus 56 ~g~~llDiGsGPtiy-~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY-QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--G-GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH-hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 567999999998443 23332 22457888886320 0
Q ss_pred -CceeeecCCCC-CCCC-----CCeeEEEec-cccccC-Ch---HHHHHHHHhcccCCcEEEEEeccccCcCcC--CCCC
Q 025071 151 -PLVIKGDFHAQ-PFDN-----GTFDFEFSN-VFDHAL-YP---WKFVGEIERTLKPAGVCVLHVALSRRADKY--SAND 216 (258)
Q Consensus 151 -~~~~~aDa~~L-Pf~d-----~SFD~V~s~-~l~h~~-~p---~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y--~~~~ 216 (258)
..++..|..+. |++. ..||+|++. +++.+. +. .++++.+.+.|||||.+++...... ..| ....
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~--t~Y~vG~~~ 212 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGS--TYYMVGGHK 212 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS---SEEEETTEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCc--eeEEECCEe
Confidence 01455676643 3433 359999984 554433 33 3578999999999999998743321 122 1111
Q ss_pred ---C-CChhHHHHHhhcCceEE
Q 025071 217 ---L-FSVKPLVKLFRESELVA 234 (258)
Q Consensus 217 ---~-~s~~~l~~lf~~~~~~~ 234 (258)
+ .+.+.+.+.++++|+.-
T Consensus 213 F~~l~l~ee~v~~al~~aG~~i 234 (256)
T PF01234_consen 213 FPCLPLNEEFVREALEEAGFDI 234 (256)
T ss_dssp EE---B-HHHHHHHHHHTTEEE
T ss_pred cccccCCHHHHHHHHHHcCCEE
Confidence 1 37788999999999743
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00038 Score=62.94 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=58.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCC-CCC------CCCCee
Q 025071 115 NESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHA-QPF------DNGTFD 169 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~-LPf------~d~SFD 169 (258)
+..+||+||+++|..+.+++.. + ..+++.+|.++. ...++.+++.+ ||- ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 5679999999999999888753 2 247999998642 12355666532 221 136899
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEE
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii 201 (258)
+|+..+- .- .-..++..+.+.|+|||.+++
T Consensus 159 ~iFiDad-K~-~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 159 FIFVDAD-KD-NYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEEecCC-HH-HhHHHHHHHHHhcCCCeEEEE
Confidence 9998532 11 123456788899999999877
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00067 Score=60.46 Aligned_cols=87 Identities=20% Similarity=0.283 Sum_probs=62.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------CCce--eee---c-CCCCCCCCCCeeEEEecc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------PPLV--IKG---D-FHAQPFDNGTFDFEFSNV 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------~~~~--~~a---D-a~~LPf~d~SFD~V~s~~ 175 (258)
.+|++||.||-|.|.....+++.....-+-|+..+. ...+ ..+ | +.. .+|++||.|+-.+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~--L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT--LPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc--ccccCcceeEeec
Confidence 578999999999999988888765434444554431 0112 222 2 223 4689999999876
Q ss_pred c-cccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 F-DHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l-~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+ +|..+-..+.+.+.|.|||||++...
T Consensus 178 y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 178 YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 5 77777778889999999999998775
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0024 Score=60.55 Aligned_cols=134 Identities=11% Similarity=0.069 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCC-C-C
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQ-P-F 163 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~L-P-f 163 (258)
+.+++.+.+.... .+.+|||++||+|.++..|++. ...|+|+|.++. ...+..+|+.+. + +
T Consensus 193 e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~ 270 (362)
T PRK05031 193 EKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAM 270 (362)
T ss_pred HHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence 3455544432211 2357999999999999988875 358999998642 123566776542 1 1
Q ss_pred C--------------CCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhc
Q 025071 164 D--------------NGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRE 229 (258)
Q Consensus 164 ~--------------d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~ 229 (258)
. ...||+|+..==..-. -.++++.+ .+|++++++..... .+ .+.+..+.+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~-~~~~l~~l---~~~~~ivyvSC~p~---------tl--arDl~~L~~g 335 (362)
T PRK05031 271 NGVREFNRLKGIDLKSYNFSTIFVDPPRAGL-DDETLKLV---QAYERILYISCNPE---------TL--CENLETLSQT 335 (362)
T ss_pred hhcccccccccccccCCCCCEEEECCCCCCC-cHHHHHHH---HccCCEEEEEeCHH---------HH--HHHHHHHcCC
Confidence 0 2258999984000000 12333333 34788877754311 11 2445555444
Q ss_pred CceEEeeeecCCCC----eEEEEEEe
Q 025071 230 SELVAVRKVDGFGL----DTEVVFRK 251 (258)
Q Consensus 230 ~~~~~v~~v~g~~l----~~~~~f~K 251 (258)
..+.++..+|=|.- .+.+.++|
T Consensus 336 Y~l~~v~~~DmFPqT~HvE~v~lL~r 361 (362)
T PRK05031 336 HKVERFALFDQFPYTHHMECGVLLEK 361 (362)
T ss_pred cEEEEEEEcccCCCCCcEEEEEEEEe
Confidence 45667777764333 24555554
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.001 Score=61.26 Aligned_cols=87 Identities=21% Similarity=0.199 Sum_probs=62.0
Q ss_pred CCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC-------------------CCceeeecCCCC-CCCCCCeeEEEec
Q 025071 116 ESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR-------------------PPLVIKGDFHAQ-PFDNGTFDFEFSN 174 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~-------------------~~~~~~aDa~~L-Pf~d~SFD~V~s~ 174 (258)
..+||-||-|.|..++++.+.. ..+++.||+.+. +..++.+|+.+. .-..++||+|++.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 3699999999999999988764 568899997531 112444554322 1112389999996
Q ss_pred ccccc-----CChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHA-----LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~-----~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+-+.. ..-..+++.++|.|+|+|+++..
T Consensus 157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 54442 12267899999999999999987
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0015 Score=60.04 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCC
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNG 166 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~ 166 (258)
+.+.+++...++++..||+||-|||+++..|-+.|. .|+++++.+. ...+..+|+..++++
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P-- 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP-- 122 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--
Confidence 344455556788999999999999999999998874 8999998642 124788898877655
Q ss_pred CeeEEEec
Q 025071 167 TFDFEFSN 174 (258)
Q Consensus 167 SFD~V~s~ 174 (258)
.||.+++|
T Consensus 123 ~fd~cVsN 130 (315)
T KOG0820|consen 123 RFDGCVSN 130 (315)
T ss_pred ccceeecc
Confidence 69999986
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00023 Score=59.86 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=49.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
-.|.+++|+|||.|.+..+.+-.+...|+|+|+.+. ...++++|...+-+..+.||.++.+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEec
Confidence 367899999999999886666556668999998652 1247889999988889999998886
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00032 Score=60.50 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=57.3
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC----------------CceeeecCC-CCC---CCCCCeeEEEec
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP----------------PLVIKGDFH-AQP---FDNGTFDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~----------------~~~~~aDa~-~LP---f~d~SFD~V~s~ 174 (258)
.+.++||+-||+|.++.+....|...|+.||.++.. ..+++.|+. .++ -.+..||+|+..
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 688999999999999987777888899999986421 234555532 222 247899999995
Q ss_pred ---cccccCChHHHHHHHH--hcccCCcEEEEEec
Q 025071 175 ---VFDHALYPWKFVGEIE--RTLKPAGVCVLHVA 204 (258)
Q Consensus 175 ---~l~h~~~p~~~l~Ei~--RVLKPGG~lii~v~ 204 (258)
..... -...+..+. ..|++||.+++..+
T Consensus 122 PPY~~~~~--~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 122 PPYAKGLY--YEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp -STTSCHH--HHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCcccchH--HHHHHHHHHHCCCCCCCEEEEEEec
Confidence 11110 244556665 79999999999764
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.001 Score=63.96 Aligned_cols=89 Identities=21% Similarity=0.200 Sum_probs=65.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------------CCceeeecCCCC-C---CCCCCeeEEEe
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------------PPLVIKGDFHAQ-P---FDNGTFDFEFS 173 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------------~~~~~~aDa~~L-P---f~d~SFD~V~s 173 (258)
.|.+|||+=|=||..+.+.+..|..+|++||.|.. +..++++|+.++ . =....||+|+.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 38999999999999998888888779999998742 124677775422 1 13459999999
Q ss_pred c--cccccC--------ChHHHHHHHHhcccCCcEEEEEe
Q 025071 174 N--VFDHAL--------YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 174 ~--~l~h~~--------~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
. +|-.-. +-...+.+..++|+|||.+++..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 5 432211 22345688999999999998865
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0045 Score=54.96 Aligned_cols=84 Identities=13% Similarity=0.093 Sum_probs=55.3
Q ss_pred CCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEecccccc
Q 025071 116 ESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNVFDHA 179 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h~ 179 (258)
+.+++|||+|.|.-+.-|+- ....+++=+|.... ...++++.+++..-...-||+|+|.++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~L 147 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVASL 147 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccch
Confidence 68999999999998877662 22235888886432 134677777776533222999999755432
Q ss_pred CChHHHHHHHHhcccCCcEEEEE
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
. ....=+...+|+||.++..
T Consensus 148 ~---~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 148 N---VLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred H---HHHHHHHHhcccCCcchhh
Confidence 2 2333356688998887653
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0049 Score=55.51 Aligned_cols=89 Identities=19% Similarity=0.169 Sum_probs=64.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------C---ceeeecCCCCC---CCCCCeeEEEec-cc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------P---LVIKGDFHAQP---FDNGTFDFEFSN-VF 176 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------~---~~~~aDa~~LP---f~d~SFD~V~s~-~l 176 (258)
...++..+||||+-||.++.-+.+.|...|+|+|..... + .....++..+- |. +..|++++. +|
T Consensus 76 l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSF 154 (245)
T COG1189 76 LDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSF 154 (245)
T ss_pred cCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeeh
Confidence 345788999999999999999999998899999975321 1 12333444332 22 257889885 44
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
- .-..++..+..+++|||.++..+-
T Consensus 155 I---SL~~iLp~l~~l~~~~~~~v~LvK 179 (245)
T COG1189 155 I---SLKLILPALLLLLKDGGDLVLLVK 179 (245)
T ss_pred h---hHHHHHHHHHHhcCCCceEEEEec
Confidence 2 245678899999999999888764
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0013 Score=59.19 Aligned_cols=91 Identities=25% Similarity=0.311 Sum_probs=61.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC-------------------CCceeeecCCCC-CCCCC-CeeEE
Q 025071 114 FNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR-------------------PPLVIKGDFHAQ-PFDNG-TFDFE 171 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~-------------------~~~~~~aDa~~L-Pf~d~-SFD~V 171 (258)
+++.+||=||-|.|..+.++.+.. ..+++.||+.+. +..++.+|+... --..+ .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 367899999999999999988764 568999998641 123566665321 11223 89999
Q ss_pred Eecccccc-----CChHHHHHHHHhcccCCcEEEEEec
Q 025071 172 FSNVFDHA-----LYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 172 ~s~~l~h~-----~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+....+.. ..-..+++.+.|.|+|||++++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 98533211 2235788999999999999999763
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0012 Score=61.16 Aligned_cols=43 Identities=14% Similarity=-0.023 Sum_probs=32.6
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhcC--CCcEEEEeCCC
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLVG--VSDSIGIDLVP 148 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g--~~~v~GvD~s~ 148 (258)
++++.-...+++.+||++||.|..+.++.+.. ...|+|+|.++
T Consensus 10 Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~ 54 (296)
T PRK00050 10 EVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDP 54 (296)
T ss_pred HHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCH
Confidence 33333345677899999999999999888753 35799999864
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.02 Score=54.09 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=59.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC--------C--C-CceeeecC-CCCCCCCCCeeEEEec-cccccCC
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVP--------R--P-PLVIKGDF-HAQPFDNGTFDFEFSN-VFDHALY 181 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~--------~--~-~~~~~aDa-~~LPf~d~SFD~V~s~-~l~h~~~ 181 (258)
.-...+|+|.|.|+.+..+.. -+.+|-|++... + + ...+-+|. .++|=+ |+|++- +++|+.|
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~----daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKG----DAIWMKWILHDWTD 251 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCc----CeEEEEeecccCCh
Confidence 347899999999999987765 344566666421 1 1 12233332 345533 588885 8999987
Q ss_pred hH--HHHHHHHhcccCCcEEEEEec
Q 025071 182 PW--KFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 182 p~--~~l~Ei~RVLKPGG~lii~v~ 204 (258)
-+ ++++.++.-|+|||.+++.-.
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEec
Confidence 64 688999999999999988744
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0058 Score=53.18 Aligned_cols=91 Identities=15% Similarity=0.092 Sum_probs=61.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCC-CCCC--CCeeEEEec
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQ-PFDN--GTFDFEFSN 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~L-Pf~d--~SFD~V~s~ 174 (258)
-.+.++||+=+|+|.++.+....|...++.||.+.. ...++..|+... +-.. +.||+|+..
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 368899999999999988777778889999997632 123555666522 1122 259999995
Q ss_pred -ccc-ccCChHHHHHH--HHhcccCCcEEEEEec
Q 025071 175 -VFD-HALYPWKFVGE--IERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 -~l~-h~~~p~~~l~E--i~RVLKPGG~lii~v~ 204 (258)
=+. ...++...+.. -...|+|||.+++...
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 121 12233443333 5678999999999654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0046 Score=63.56 Aligned_cols=91 Identities=15% Similarity=0.018 Sum_probs=59.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-------------C------------------------------CCcEEEEeCCCC-
Q 025071 114 FNESKALSIGARVGQEVAALKLV-------------G------------------------------VSDSIGIDLVPR- 149 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-------------g------------------------------~~~v~GvD~s~~- 149 (258)
.++..++|.+||+|.+..+.+.. + ...++|+|+++.
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 45789999999999987544321 0 015899998642
Q ss_pred ---------------CCceeeecCCCCCCCC--CCeeEEEec--cccccCC---hHHHH---HHHHhcccCCcEEEEEec
Q 025071 150 ---------------PPLVIKGDFHAQPFDN--GTFDFEFSN--VFDHALY---PWKFV---GEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 150 ---------------~~~~~~aDa~~LPf~d--~SFD~V~s~--~l~h~~~---p~~~l---~Ei~RVLKPGG~lii~v~ 204 (258)
...+.++|+.+++.++ ++||+|++| ....+.+ ....+ .++.|...||+.+++..+
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 1246788998887653 589999998 2222221 22233 344555559999888765
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0029 Score=62.62 Aligned_cols=34 Identities=18% Similarity=0.064 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhcC---------CCcEEEEeCCC
Q 025071 115 NESKALSIGARVGQEVAALKLVG---------VSDSIGIDLVP 148 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g---------~~~v~GvD~s~ 148 (258)
...+|||.|||+|.+..++.+.. ..+++|+|+++
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~ 73 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDK 73 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhH
Confidence 45689999999999987665321 13578999753
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.013 Score=53.86 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=76.6
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCCCCCC--CCCeeEE
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFD--NGTFDFE 171 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~--d~SFD~V 171 (258)
.+.+|.+||+-|+|+|.++.++++. + -.+++..|..+. ...+..-|....-|. +..+|+|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceE
Confidence 4679999999999999999988763 2 347888897531 112445566655554 5788988
Q ss_pred EeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 172 FSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 172 ~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
+.. ++.|+.++--++.+||-+|.-++.++.|-+ -.+.-.+.+.++|++++..+
T Consensus 182 FLD----lPaPw~AiPha~~~lk~~g~r~csFSPCIE----------Qvqrtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 182 FLD----LPAPWEAIPHAAKILKDEGGRLCSFSPCIE----------QVQRTCEALRSLGFIEIETV 234 (314)
T ss_pred EEc----CCChhhhhhhhHHHhhhcCceEEeccHHHH----------HHHHHHHHHHhCCCceEEEE
Confidence 874 457899998899999999865555554411 01223445566676665554
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.018 Score=50.24 Aligned_cols=106 Identities=23% Similarity=0.263 Sum_probs=68.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCCC--------------CceeeecCCCCCCCCCCeeEEEec---c
Q 025071 115 NESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPRP--------------PLVIKGDFHAQPFDNGTFDFEFSN---V 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~~--------------~~~~~aDa~~LPf~d~SFD~V~s~---~ 175 (258)
....+||||||+|-.+..|++. +.....++|+++.. ..++++|... -...++.|+++-| +
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-hhccCCccEEEECCCcC
Confidence 3678999999999999998863 33457899997531 2356666432 2334889988775 2
Q ss_pred c---ccc------------CC----hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 176 F---DHA------------LY----PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 176 l---~h~------------~~----p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
. +.. .+ -++.+..+-.+|.|.|++++.... .| ..+++.+.++..|+
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~--------~N---~p~ei~k~l~~~g~ 186 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR--------AN---KPKEILKILEKKGY 186 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh--------hc---CHHHHHHHHhhccc
Confidence 1 111 11 124456677788999999987531 12 25788888877664
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0094 Score=56.49 Aligned_cols=91 Identities=20% Similarity=0.236 Sum_probs=62.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCC---CcEEEEeCCCCC---------------CceeeecCCCCC---CCCCCeeE
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGV---SDSIGIDLVPRP---------------PLVIKGDFHAQP---FDNGTFDF 170 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~---~~v~GvD~s~~~---------------~~~~~aDa~~LP---f~d~SFD~ 170 (258)
...+|.+|||+++++|.-+..+++... ..|+++|.++.+ ..+...|+..++ ...+.||.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 356789999999999998888876532 246999987521 135666766554 22235999
Q ss_pred EEec-------cccccC------Ch----------HHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSN-------VFDHAL------YP----------WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~-------~l~h~~------~p----------~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+.. ++..-+ .+ .+.+....++|||||.++..
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9873 232111 12 24678899999999998885
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0049 Score=55.66 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=59.6
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC-------------CCCceeeecCCCCCCCC---CC
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP-------------RPPLVIKGDFHAQPFDN---GT 167 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~-------------~~~~~~~aDa~~LPf~d---~S 167 (258)
.+.+++...+.++..|||||+|+|.++..|.+.+ .+++++|+.+ ....++.+|+..+...+ +.
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~ 97 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQ 97 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSS
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCC
Confidence 3344443345578899999999999999999887 6899999753 12357889999988776 45
Q ss_pred eeEEEeccccccCChHHHHHHHHhcccC
Q 025071 168 FDFEFSNVFDHALYPWKFVGEIERTLKP 195 (258)
Q Consensus 168 FD~V~s~~l~h~~~p~~~l~Ei~RVLKP 195 (258)
-..|+++ +.+ .-....+..+.+.-+.
T Consensus 98 ~~~vv~N-lPy-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 98 PLLVVGN-LPY-NISSPILRKLLELYRF 123 (262)
T ss_dssp EEEEEEE-ETG-TGHHHHHHHHHHHGGG
T ss_pred ceEEEEE-ecc-cchHHHHHHHhhcccc
Confidence 5666665 332 1234455566553333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0025 Score=60.94 Aligned_cols=84 Identities=17% Similarity=0.105 Sum_probs=62.8
Q ss_pred CCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCCC---------------CceeeecCCCCCC-CCCCeeEEEecccc
Q 025071 116 ESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPRP---------------PLVIKGDFHAQPF-DNGTFDFEFSNVFD 177 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~~---------------~~~~~aDa~~LPf-~d~SFD~V~s~~l~ 177 (258)
+-+|||+-||+|..+..++.. |...|+++|+++.. ..+.++|+..+-- ..+.||+|...-+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPf- 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPF- 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCC-
Confidence 358999999999998877764 66789999987521 1355566654421 2367999988532
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
-.|..++..+.+.+++||.++++
T Consensus 124 --Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 --GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --CCcHHHHHHHHHhcccCCEEEEE
Confidence 24667899999999999999997
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.013 Score=52.47 Aligned_cols=85 Identities=24% Similarity=0.349 Sum_probs=57.2
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC----------------CceeeecCC-CCC-----CCCCCeeE
Q 025071 115 NESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP----------------PLVIKGDFH-AQP-----FDNGTFDF 170 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~----------------~~~~~aDa~-~LP-----f~d~SFD~ 170 (258)
.++++||||.=||..+.+.+.. . -.+|+++|+.+.. ..++++++. .|+ .+.++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 6789999999999876655532 1 2479999986531 123444332 111 25789999
Q ss_pred EEeccccccC-ChHHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSNVFDHAL-YPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~-~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|..+ .. +-...+.+..|.||+||++++-
T Consensus 153 aFvDa---dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFVDA---DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEcc---chHHHHHHHHHHHhhcccccEEEEe
Confidence 99743 11 1235678999999999999884
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0069 Score=49.58 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHh-cCCCCCCEEEEECCCCCHHHHHHHh-----cCCCcEEEEeCCC
Q 025071 99 VFSRFFQDLKQR-HFLFNESKALSIGARVGQEVAALKL-----VGVSDSIGIDLVP 148 (258)
Q Consensus 99 ~~~~~~~~L~~~-~~l~~~~~VLDIGcGtG~~~~~L~~-----~g~~~v~GvD~s~ 148 (258)
.+..+++.+.+. ....+...|+|+|||-|.++..|+. ....+|+|+|.++
T Consensus 8 ~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 8 RMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE 63 (141)
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence 344555555443 2335677999999999999998887 3334799999864
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.069 Score=50.08 Aligned_cols=94 Identities=12% Similarity=0.115 Sum_probs=62.0
Q ss_pred CCCCCEEEEECCCCCHHHHH----HHhcC-CCcEEEEeCCCC--------------CCc---eeeecCCC----CCC--C
Q 025071 113 LFNESKALSIGARVGQEVAA----LKLVG-VSDSIGIDLVPR--------------PPL---VIKGDFHA----QPF--D 164 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~----L~~~g-~~~v~GvD~s~~--------------~~~---~~~aDa~~----LPf--~ 164 (258)
+.++..++|+|||+|.-+.. |.+.+ ....+++|+|.. +.. -++||..+ +|= .
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 45677999999999996543 33322 236899998741 111 24565532 321 2
Q ss_pred CCCeeEEEe-c-cccccCChH--HHHHHHHh-cccCCcEEEEEeccc
Q 025071 165 NGTFDFEFS-N-VFDHALYPW--KFVGEIER-TLKPAGVCVLHVALS 206 (258)
Q Consensus 165 d~SFD~V~s-~-~l~h~~~p~--~~l~Ei~R-VLKPGG~lii~v~~~ 206 (258)
.+...+++. + ++.++..++ .+++++++ +|+|||.+++.+..+
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 345677776 3 777766444 56799999 999999999976544
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0069 Score=57.28 Aligned_cols=89 Identities=19% Similarity=0.144 Sum_probs=70.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC----------------CceeeecCCCCCCCCCCeeEEEecc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP----------------PLVIKGDFHAQPFDNGTFDFEFSNV 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~----------------~~~~~aDa~~LPf~d~SFD~V~s~~ 175 (258)
...+|.+|||+=||-|.++..++..|...|+++|+++.. ...+.||+...+..-+.||-|+++.
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred hhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 345699999999999999999999886569999998631 2357899998888878999999974
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
.. .-..++....+.+|+||.+-...
T Consensus 265 p~---~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 265 PK---SAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred CC---cchhhHHHHHHHhhcCcEEEEEe
Confidence 32 22356677888899999887764
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.027 Score=51.58 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=60.4
Q ss_pred CEEEEECCCCC--HHHHHHHh--cCCCcEEEEeCCC------------CC---CceeeecCCC-------------CCCC
Q 025071 117 SKALSIGARVG--QEVAALKL--VGVSDSIGIDLVP------------RP---PLVIKGDFHA-------------QPFD 164 (258)
Q Consensus 117 ~~VLDIGcGtG--~~~~~L~~--~g~~~v~GvD~s~------------~~---~~~~~aDa~~-------------LPf~ 164 (258)
...||||||-- .+....++ ....+|+-+|..+ .+ ..++++|..+ |.|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~- 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF- 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC-
Confidence 46999999933 34444543 2346899999753 11 2367777642 222
Q ss_pred CCCeeEEEeccccccC---ChHHHHHHHHhcccCCcEEEEEeccccCcC--------cC----CCCCCCChhHHHHHhhc
Q 025071 165 NGTFDFEFSNVFDHAL---YPWKFVGEIERTLKPAGVCVLHVALSRRAD--------KY----SANDLFSVKPLVKLFRE 229 (258)
Q Consensus 165 d~SFD~V~s~~l~h~~---~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~--------~y----~~~~~~s~~~l~~lf~~ 229 (258)
+.-.-+++..+++|+. +|..+++.+...|.||.+++++..+..... .| ......|.+++.++|..
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~g 228 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFDG 228 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCTT
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcCC
Confidence 2334444455788875 588899999999999999999854432110 11 12234689999999986
Q ss_pred Cce
Q 025071 230 SEL 232 (258)
Q Consensus 230 ~~~ 232 (258)
.++
T Consensus 229 ~el 231 (267)
T PF04672_consen 229 LEL 231 (267)
T ss_dssp SEE
T ss_pred Ccc
Confidence 643
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.013 Score=53.55 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCCCCc--------------e-eeec--CCCCC
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPRPPL--------------V-IKGD--FHAQP 162 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~~~~--------------~-~~aD--a~~LP 162 (258)
.++.++.....--.+.+|||+|||+|..+-+..+. ...+++.+|.|+.... . ...+ .+..+
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 34444443322234678999999999876655542 3457899998653210 0 0000 11233
Q ss_pred CCCCCeeEEEec-cccccCC--hHHHHHHHHhcccCCcEEEEEecc
Q 025071 163 FDNGTFDFEFSN-VFDHALY--PWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 163 f~d~SFD~V~s~-~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
+.. .|+|+++ +|..+.+ ...+++.+.+.+.+ .++++.+.
T Consensus 100 ~~~--~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 100 FPP--DDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred CCC--CcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 333 2999984 6766655 22344555555544 66666543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.013 Score=51.52 Aligned_cols=86 Identities=21% Similarity=0.288 Sum_probs=58.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------CceeeecCCCCCCCCCCeeEEEec--ccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------PLVIKGDFHAQPFDNGTFDFEFSN--VFD 177 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------~~~~~aDa~~LPf~d~SFD~V~s~--~l~ 177 (258)
-.+.+|||+|+|+|-.+.+-+..|...|+..|+.+.. +.+...| .+ ..+..||+++.+ .++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d--~~-g~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHAD--LI-GSPPAFDLLLAGDLFYN 154 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeecc--cc-CCCcceeEEEeeceecC
Confidence 3578999999999999888888887788888875421 1122222 22 378899999986 334
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
| ..-.+.+. +.+.|+-.|..++...
T Consensus 155 ~-~~a~~l~~-~~~~l~~~g~~vlvgd 179 (218)
T COG3897 155 H-TEADRLIP-WKDRLAEAGAAVLVGD 179 (218)
T ss_pred c-hHHHHHHH-HHHHHHhCCCEEEEeC
Confidence 4 23445555 7888888887776543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.011 Score=52.81 Aligned_cols=91 Identities=23% Similarity=0.296 Sum_probs=58.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC-----------Cc-e-eeecCCCCCCC----CCCeeEEE
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP-----------PL-V-IKGDFHAQPFD----NGTFDFEF 172 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~-----------~~-~-~~aDa~~LPf~----d~SFD~V~ 172 (258)
.+.+|++||-+|+.+|.....+++. | -..|+||+.++.+ .+ + +.+|+. .|.. =+.+|+|+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr-~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDAR-HPEKYRMLVEMVDVIF 148 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TT-SGGGGTTTS--EEEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCC-ChHHhhcccccccEEE
Confidence 4678999999999999998888763 3 3469999998631 12 2 556665 3421 24899999
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+.+- +-.+-+.++..+..-||+||.+++.+-
T Consensus 149 ~DVa-Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 149 QDVA-QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp EE-S-STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecCC-ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 9632 222233456777889999999988753
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0034 Score=58.01 Aligned_cols=89 Identities=20% Similarity=0.265 Sum_probs=58.8
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------------CCceeeecCCC-CCC--CCCCeeEEEec
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------------PPLVIKGDFHA-QPF--DNGTFDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------------~~~~~~aDa~~-LPf--~d~SFD~V~s~ 174 (258)
.+.+|||+=|=||.++.+.+..|..+|++||.|.. ...++++|+.+ |.- ..+.||+|++.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 57899999999999998877778778999998631 12356666542 110 24699999995
Q ss_pred --cccccC-----ChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 --VFDHAL-----YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 --~l~h~~-----~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+|-.-. +-.+.+..+.++|+|||.++...
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 432111 22345678889999999987654
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.072 Score=46.81 Aligned_cols=91 Identities=26% Similarity=0.243 Sum_probs=55.7
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHh-c-CCCcEEEEeCCCCC----Cceeee-cC----------CCCCCCCCCeeEEEe
Q 025071 111 HFLFNESKALSIGARVGQEVAALKL-V-GVSDSIGIDLVPRP----PLVIKG-DF----------HAQPFDNGTFDFEFS 173 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~-~-g~~~v~GvD~s~~~----~~~~~a-Da----------~~LPf~d~SFD~V~s 173 (258)
..+.++.+|||+||.+|.++.-..+ . +..-|.|||+-+.. ...+.+ |. +.| ++-..|+|+|
T Consensus 65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~l--p~r~VdvVlS 142 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEAL--PNRPVDVVLS 142 (232)
T ss_pred cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhC--CCCcccEEEe
Confidence 3578899999999999999875543 2 23469999985421 123333 32 344 5678999999
Q ss_pred cc---------ccccCChH---HHHHHHHhcccCCcEEEEEe
Q 025071 174 NV---------FDHALYPW---KFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 174 ~~---------l~h~~~p~---~~l~Ei~RVLKPGG~lii~v 203 (258)
.. .+|...-+ .++.=..-.++|+|.+++-+
T Consensus 143 DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 143 DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 42 23322111 11112234578999988754
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.052 Score=51.34 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
..+++.+++.....++ +|||+-||.|.++..|++.. ..|+|||.++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~ 228 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVE 228 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-H
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCH
Confidence 3455555543333333 89999999999999998864 5899999864
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.062 Score=52.43 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC---------------CceeeecCCCCCCC--
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP---------------PLVIKGDFHAQPFD-- 164 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~-- 164 (258)
.+++...+.....++.++||+=||.|.++..|++.. .+|+|+|+++.. ..+..+++++..-.
T Consensus 280 kl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~ 358 (432)
T COG2265 280 KLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW 358 (432)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc
Confidence 344444443334566799999999999999999654 589999987521 24677787766544
Q ss_pred -CCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 165 -NGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 165 -d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
...||.|+.+=-.-.. ...+++++.+ ++|-.++++..
T Consensus 359 ~~~~~d~VvvDPPR~G~-~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 359 EGYKPDVVVVDPPRAGA-DREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred ccCCCCEEEECCCCCCC-CHHHHHHHHh-cCCCcEEEEeC
Confidence 3589999984000000 1345666665 47777777754
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.16 Score=46.81 Aligned_cols=87 Identities=18% Similarity=0.202 Sum_probs=50.2
Q ss_pred CCEEEEECCCCCHHHH-HHHh-cCC-CcEEEEeCCCC-----------------CCceeeecCCCCCCCCCCeeEEEecc
Q 025071 116 ESKALSIGARVGQEVA-ALKL-VGV-SDSIGIDLVPR-----------------PPLVIKGDFHAQPFDNGTFDFEFSNV 175 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~-~L~~-~g~-~~v~GvD~s~~-----------------~~~~~~aDa~~LPf~d~SFD~V~s~~ 175 (258)
+.+|+-||||+=-++. .|++ .+. ..|+++|+++. ...++.+|+...+.+-..||+|+.++
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 4599999999766543 4443 332 36889998642 12467788887777667999999864
Q ss_pred ccc--cCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDH--ALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h--~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+-. ..+..+++..+.+.++||..+++=
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 322 225678899999999999988885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.03 Score=49.35 Aligned_cols=91 Identities=15% Similarity=0.039 Sum_probs=58.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CC-CcEEEEeCCCC---------------------CCceeeecCCCCCCCCCCe
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GV-SDSIGIDLVPR---------------------PPLVIKGDFHAQPFDNGTF 168 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~-~~v~GvD~s~~---------------------~~~~~~aDa~~LPf~d~SF 168 (258)
.++++.+|+|+=-|.|.+++.++.. |. ..|++.-..+. ...++-.+...++ +.+..
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~ 123 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKL 123 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcc
Confidence 4689999999999999999888753 21 24665443211 0012222333455 55566
Q ss_pred eEEEeccc--------cccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 169 DFEFSNVF--------DHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 169 D~V~s~~l--------~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
|+++.+.. -|--.-.++.++++++|||||.+.+.-
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 77765311 222244677899999999999998863
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.0025 Score=49.05 Aligned_cols=83 Identities=23% Similarity=0.265 Sum_probs=34.1
Q ss_pred EEECCCCCHHHHHHHhc----CCCcEEEEeCCC---CC------------CceeeecCCCC--CCCCCCeeEEEeccccc
Q 025071 120 LSIGARVGQEVAALKLV----GVSDSIGIDLVP---RP------------PLVIKGDFHAQ--PFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 120 LDIGcGtG~~~~~L~~~----g~~~v~GvD~s~---~~------------~~~~~aDa~~L--Pf~d~SFD~V~s~~l~h 178 (258)
|+|||..|..+..+++. +..+++++|..+ .. ..+++++..+. -+++++||+++...-|.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 68999999887766542 223689999865 11 12344544311 12368999999853222
Q ss_pred cCChHHHHHHHHhcccCCcEEEEE
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
...-...++.+.+.|+|||.+++.
T Consensus 81 ~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 81 YEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 223345678899999999998873
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.017 Score=50.72 Aligned_cols=82 Identities=18% Similarity=0.184 Sum_probs=56.8
Q ss_pred CEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEeccccccC-
Q 025071 117 SKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNVFDHAL- 180 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h~~- 180 (258)
+.+-|+|+|+|.++...+.. ..+|++++..+. ...++.+|+....| +..|+|+|..++...
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhh
Confidence 57899999999988665555 468999997652 12468899988888 557999996444432
Q ss_pred -C-hHHHHHHHHhcccCCcEEEE
Q 025071 181 -Y-PWKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 181 -~-p~~~l~Ei~RVLKPGG~lii 201 (258)
. .-.++..+..-||-+|.++=
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cccccHHHHHHHHHhhcCCcccc
Confidence 1 12345555556778887654
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.009 Score=50.88 Aligned_cols=56 Identities=25% Similarity=0.295 Sum_probs=35.7
Q ss_pred EEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCC--CCCCC-eeEEEec
Q 025071 118 KALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQP--FDNGT-FDFEFSN 174 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LP--f~d~S-FD~V~s~ 174 (258)
.|+|+.||.|..+..+++.. ..|+++|+++. ...++.+|+.++- +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999874 58999998642 1246777765432 22222 8999873
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.045 Score=48.69 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=40.2
Q ss_pred eeecCCCC--CCCCCCeeEEEec---cc--cccC-----------ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCC
Q 025071 154 IKGDFHAQ--PFDNGTFDFEFSN---VF--DHAL-----------YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSAN 215 (258)
Q Consensus 154 ~~aDa~~L--Pf~d~SFD~V~s~---~l--~h~~-----------~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~ 215 (258)
..+|+.++ .++|+|+|+|+.. .+ .+.. --..++.|++|||||||.+++.... +
T Consensus 5 ~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~---------~ 75 (227)
T PRK13699 5 ILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW---------N 75 (227)
T ss_pred EechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc---------c
Confidence 44555443 4678888888774 11 1100 0135789999999999988764321 0
Q ss_pred CCCChhHHHHHhhcCceE
Q 025071 216 DLFSVKPLVKLFRESELV 233 (258)
Q Consensus 216 ~~~s~~~l~~lf~~~~~~ 233 (258)
....+...+.+.|+.
T Consensus 76 ---~~~~~~~al~~~GF~ 90 (227)
T PRK13699 76 ---RVDRFMAAWKNAGFS 90 (227)
T ss_pred ---cHHHHHHHHHHCCCE
Confidence 123455666777754
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.032 Score=44.53 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCC
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLV 147 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s 147 (258)
+.....|||||+|-+...|...|+ .-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 456799999999999999999997 57899974
|
; GO: 0008168 methyltransferase activity |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.044 Score=50.33 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=61.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC---------------CceeeecCCCC-C-CCCCCeeEEEe
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP---------------PLVIKGDFHAQ-P-FDNGTFDFEFS 173 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~---------------~~~~~aDa~~L-P-f~d~SFD~V~s 173 (258)
..++.+|||+++|+|.-+..+++. + ...+++.|++... ..+...|+... + .....||.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 457889999999999988888764 2 3579999987421 12334566554 1 23346999997
Q ss_pred c-------cccccCC----------------hHHHHHHHHhcc----cCCcEEEEEe
Q 025071 174 N-------VFDHALY----------------PWKFVGEIERTL----KPAGVCVLHV 203 (258)
Q Consensus 174 ~-------~l~h~~~----------------p~~~l~Ei~RVL----KPGG~lii~v 203 (258)
. ++..-++ ..+.++...+.+ ||||+++..+
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 3 2332221 124678899999 9999988853
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.018 Score=51.71 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=39.7
Q ss_pred hcCCCCC--CEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------------------CCceeeecCCC-CC
Q 025071 110 RHFLFNE--SKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------------------PPLVIKGDFHA-QP 162 (258)
Q Consensus 110 ~~~l~~~--~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------------------~~~~~~aDa~~-LP 162 (258)
+..++++ .+|||.=||-|..+..++..|+ +|++++.++. ...++.+|+.+ |+
T Consensus 68 A~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~ 146 (234)
T PF04445_consen 68 AVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR 146 (234)
T ss_dssp HTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC
T ss_pred HhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh
Confidence 3345554 3899999999999998888886 7999997641 11356666554 56
Q ss_pred CCCCCeeEEEec-cccc
Q 025071 163 FDNGTFDFEFSN-VFDH 178 (258)
Q Consensus 163 f~d~SFD~V~s~-~l~h 178 (258)
.++++||+|... .|.|
T Consensus 147 ~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 147 QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CHSS--SEEEE--S---
T ss_pred hcCCCCCEEEECCCCCC
Confidence 678999999986 5544
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.027 Score=51.49 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=35.2
Q ss_pred ceeeecCCCC--CCCCCCeeEEEec---cc-cccCC-------------hHHHHHHHHhcccCCcEEEEEe
Q 025071 152 LVIKGDFHAQ--PFDNGTFDFEFSN---VF-DHALY-------------PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 152 ~~~~aDa~~L--Pf~d~SFD~V~s~---~l-~h~~~-------------p~~~l~Ei~RVLKPGG~lii~v 203 (258)
.++++|+.+. .++++|||+|+++ .. ....+ -...+.|+.|+|||||.+++..
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3566666553 4678899999985 11 00000 1357899999999999998864
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.14 Score=48.13 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=34.0
Q ss_pred CCCEEEEECCCCCHHHHHH--------Hhc----C-----CCcEEEEeCCCC-------------------CCce---ee
Q 025071 115 NESKALSIGARVGQEVAAL--------KLV----G-----VSDSIGIDLVPR-------------------PPLV---IK 155 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L--------~~~----g-----~~~v~GvD~s~~-------------------~~~~---~~ 155 (258)
..-+|.|+||..|.++..+ .+. + .-.|+--|+-.. +..+ +-
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 4458999999999986433 111 1 014666775210 1112 34
Q ss_pred ecCCCCCCCCCCeeEEEec-cccccC
Q 025071 156 GDFHAQPFDNGTFDFEFSN-VFDHAL 180 (258)
Q Consensus 156 aDa~~LPf~d~SFD~V~s~-~l~h~~ 180 (258)
+.+..-=|+++|.|+++|. ++||+.
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred chhhhccCCCCceEEEEEechhhhcc
Confidence 5677777999999999994 666643
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.037 Score=50.98 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=26.3
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCC
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLV 147 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s 147 (258)
..-.+++|||+|||+|-........|...+...|.+
T Consensus 113 ~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~n 148 (282)
T KOG2920|consen 113 MSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFN 148 (282)
T ss_pred eEecCceeEecCCcccccchhhhhhccceeeeEecc
Confidence 345688999999999987776655554456666654
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.075 Score=50.75 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCC-------------------CCCceee
Q 025071 100 FSRFFQDLKQRHF---LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVP-------------------RPPLVIK 155 (258)
Q Consensus 100 ~~~~~~~L~~~~~---l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~-------------------~~~~~~~ 155 (258)
|+.++..|-+... --...+|||+|.|+|.-+-++... + ...++-++.++ .+..-++
T Consensus 95 Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt 174 (484)
T COG5459 95 YASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVT 174 (484)
T ss_pred HHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccc
Confidence 4555555544221 113457999999999876555432 1 12233333322 1111233
Q ss_pred ecCCCCCCCCCCeeEEEe-ccccccCCh---HHHHHHHHhcccCCcEEEEEecc
Q 025071 156 GDFHAQPFDNGTFDFEFS-NVFDHALYP---WKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 156 aDa~~LPf~d~SFD~V~s-~~l~h~~~p---~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
.|-..+|..| ++++|+. +-+-|...+ ...++.+...+.|||.++|..+.
T Consensus 175 ~dRl~lp~ad-~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 175 EDRLSLPAAD-LYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhccCCCccc-eeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 3444555444 6887776 334343322 23678899999999999998653
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.25 Score=46.60 Aligned_cols=92 Identities=15% Similarity=0.040 Sum_probs=57.2
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCC---------CceeeecCCC-C-----CC-CCCCeeEEE
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRP---------PLVIKGDFHA-Q-----PF-DNGTFDFEF 172 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~---------~~~~~aDa~~-L-----Pf-~d~SFD~V~ 172 (258)
..+.++.+||.+|||+ |..+..+++ .|...++++|.++.. ..++.....+ + .+ .+..+|+|+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 3456788999999987 777776665 565458999865321 1111111110 0 12 223699998
Q ss_pred eccc------------ccc----CChHHHHHHHHhcccCCcEEEEE
Q 025071 173 SNVF------------DHA----LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~~l------------~h~----~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..+- .|. .++...+.++.|.|+|||++++.
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred ECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 7421 111 24566789999999999999876
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.04 Score=44.21 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=26.3
Q ss_pred EEEEECCCCCHHHHHHHhcCC-CcEEEEeCCCC
Q 025071 118 KALSIGARVGQEVAALKLVGV-SDSIGIDLVPR 149 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~ 149 (258)
.+||||||.|..+..+++.+. .+++++|.++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~ 33 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPD 33 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHH
Confidence 389999999999988887654 37999998753
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.14 Score=49.36 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=18.4
Q ss_pred ecCCCCCCCCCCeeEEEec-cccccC
Q 025071 156 GDFHAQPFDNGTFDFEFSN-VFDHAL 180 (258)
Q Consensus 156 aDa~~LPf~d~SFD~V~s~-~l~h~~ 180 (258)
|.+..-=|+++|.++++|. ++||+.
T Consensus 151 GSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 151 GSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ccccccccCCCceEEEEeeccceecc
Confidence 3455555899999999995 676654
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.15 Score=46.08 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=59.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhc--------CC--CcEEEEeCCCCCC----ceeeecCCCCC--------CCCCCeeEEE
Q 025071 115 NESKALSIGARVGQEVAALKLV--------GV--SDSIGIDLVPRPP----LVIKGDFHAQP--------FDNGTFDFEF 172 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~--------g~--~~v~GvD~s~~~~----~~~~aDa~~LP--------f~d~SFD~V~ 172 (258)
.-.+++|+.+.+|.++..|++. +. ..+++||+.+-.+ .-+++|+.+.. |..+.-|+|+
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVv 120 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVV 120 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEE
Confidence 3468999999999999888652 11 1299999876433 34677776543 6778899999
Q ss_pred ec---cccccCChH---------HHHHHHHhcccCCcEEEEE
Q 025071 173 SN---VFDHALYPW---------KFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~---~l~h~~~p~---------~~l~Ei~RVLKPGG~lii~ 202 (258)
|. .+..+.+-. .++.=..+||||||.++--
T Consensus 121 cDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 121 CDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred eCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 94 222222222 2445667999999988763
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.15 Score=46.38 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=32.0
Q ss_pred HhcCCCCCC--EEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 109 QRHFLFNES--KALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 109 ~~~~l~~~~--~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
++..++++. +|||+=+|.|..+..++..|+. |+++|.++
T Consensus 80 kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p 120 (250)
T PRK10742 80 KAVGIKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNP 120 (250)
T ss_pred HHhCCCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCH
Confidence 333456666 8999999999999999999974 99999753
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.52 Score=41.92 Aligned_cols=90 Identities=23% Similarity=0.270 Sum_probs=60.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCCC-----------c--eeeecCCCCCC----CCCCeeEEEe
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRPP-----------L--VIKGDFHAQPF----DNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~~-----------~--~~~aDa~~LPf----~d~SFD~V~s 173 (258)
.++++++||=+|+.+|......++. |...++||+.++.+. . =+.+||. .|- -=+..|+|+.
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~-~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDAR-KPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccC-CcHHhhhhcccccEEEE
Confidence 4678999999999999988888773 434699999886431 1 1345554 231 1246899988
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
.+- .-.+-+.++..+..-||+||.+++.+
T Consensus 152 DVA-Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 152 DVA-QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred ecC-CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 521 11112335678889999999877764
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.11 Score=51.63 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=32.2
Q ss_pred hcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC
Q 025071 110 RHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR 149 (258)
Q Consensus 110 ~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~ 149 (258)
...++.+..+||+.||||.+..++++ |...|+||++++.
T Consensus 378 ~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~ 416 (534)
T KOG2187|consen 378 WAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPD 416 (534)
T ss_pred HhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChh
Confidence 34567778999999999999988876 4678999998753
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.47 Score=44.96 Aligned_cols=83 Identities=19% Similarity=0.107 Sum_probs=55.5
Q ss_pred CCCCCCEEEEECCCCCH--HHHHHHh-cCCCcEEEEeCCCCCC---------ceeee-cCCCCCCCCCCeeEEEeccccc
Q 025071 112 FLFNESKALSIGARVGQ--EVAALKL-VGVSDSIGIDLVPRPP---------LVIKG-DFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~--~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~a-Da~~LPf~d~SFD~V~s~~l~h 178 (258)
.+.++.+|+=+|+| |- .+..+++ .| .+|+++|.++... .++.+ |....+--.+.||+|+..+
T Consensus 163 ~~~pG~~V~I~G~G-GlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv--- 237 (339)
T COG1064 163 NVKPGKWVAVVGAG-GLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV--- 237 (339)
T ss_pred CCCCCCEEEEECCc-HHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC---
Confidence 46789999999998 54 4555555 67 6999999976421 23332 1222221123499999853
Q ss_pred cCChHHHHHHHHhcccCCcEEEEE
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+...+....+.||+||.+++.
T Consensus 238 ---~~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 238 ---GPATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred ---ChhhHHHHHHHHhcCCEEEEE
Confidence 134567889999999999886
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.62 Score=41.96 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=52.6
Q ss_pred cCCCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCC--------C-ceeeecCCCC-----CCCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRP--------P-LVIKGDFHAQ-----PFDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~--------~-~~~~aDa~~L-----Pf~d~SFD~V~s~ 174 (258)
..+.++.+||..||| .|..+..+++ .|. +|++++.++.. . .+........ ...++.+|+|+.+
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~ 239 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDF 239 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEEC
Confidence 446678899998876 3666666655 564 68888765321 0 1111110000 1234678988864
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+- ....++++.|.|++||.++..
T Consensus 240 ~g-----~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 240 VG-----TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 21 134678999999999998875
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.25 Score=43.99 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCHHHHHHHhc-CCCcEEEEeC
Q 025071 116 ESKALSIGARVGQEVAALKLV-GVSDSIGIDL 146 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~ 146 (258)
.-.+.|||||-|.+...|+.. +..-+.|+++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEI 92 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEI 92 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehh
Confidence 346999999999999988864 3345889886
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.6 Score=38.65 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=46.5
Q ss_pred CCCEEEEECCCCCHHHHHHHh----c-CCCcEEEEeCCC--------------CCCceeeecCCCCCC--------CCCC
Q 025071 115 NESKALSIGARVGQEVAALKL----V-GVSDSIGIDLVP--------------RPPLVIKGDFHAQPF--------DNGT 167 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~----~-g~~~v~GvD~s~--------------~~~~~~~aDa~~LPf--------~d~S 167 (258)
++..|+++|.-.|..+...++ . +..+|+|||+.- ....+++||....-. ....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 467899999999998766553 3 335899999831 122467777653221 1234
Q ss_pred eeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 168 FDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 168 FD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
-.+|+-.+=|...+-...++-....++||+++++.
T Consensus 112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 112 PVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp SEEEEESS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred ceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 44666543333334456667788999999999985
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.73 Score=40.52 Aligned_cols=100 Identities=20% Similarity=0.166 Sum_probs=58.8
Q ss_pred EEEECCCCCHHHHHHHhcCC-CcEEEEeCCCCC----------------CceeeecCCCCCCCCCC-eeEEEeccccccC
Q 025071 119 ALSIGARVGQEVAALKLVGV-SDSIGIDLVPRP----------------PLVIKGDFHAQPFDNGT-FDFEFSNVFDHAL 180 (258)
Q Consensus 119 VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~~----------------~~~~~aDa~~LPf~d~S-FD~V~s~~l~h~~ 180 (258)
|.||||--|.+..+|.+.|. ..++++|+++.| ..+..+|..+ +++.+. .|.|+.+.+--..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHHH
Confidence 68999999999999998874 469999997532 2356677543 333333 6877764221100
Q ss_pred ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 181 YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
-...+.+...+++....++++ |.. ....+.+++.+.|+.
T Consensus 80 -I~~ILe~~~~~~~~~~~lILq-P~~------------~~~~LR~~L~~~gf~ 118 (205)
T PF04816_consen 80 -IIEILEAGPEKLSSAKRLILQ-PNT------------HAYELRRWLYENGFE 118 (205)
T ss_dssp -HHHHHHHTGGGGTT--EEEEE-ESS-------------HHHHHHHHHHTTEE
T ss_pred -HHHHHHhhHHHhccCCeEEEe-CCC------------ChHHHHHHHHHCCCE
Confidence 134456666677665666665 321 357888999888865
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.34 Score=44.12 Aligned_cols=122 Identities=15% Similarity=0.144 Sum_probs=70.5
Q ss_pred EEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------CCceeeecCCCCCCC--CCCeeEEEec----cc---c--
Q 025071 118 KALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------PPLVIKGDFHAQPFD--NGTFDFEFSN----VF---D-- 177 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------~~~~~~aDa~~LPf~--d~SFD~V~s~----~l---~-- 177 (258)
+++|+-||.|.....+.+.|+..+.++|+.+. +..+..+|..++.-. ...+|+++.+ .+ .
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~~ 81 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGKR 81 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhhc
Confidence 68999999999999998889877889998642 233566777766543 3579999974 11 1
Q ss_pred -ccCChHH-HHHH---HHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE-Eeeeec--CCCCe
Q 025071 178 -HALYPWK-FVGE---IERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV-AVRKVD--GFGLD 244 (258)
Q Consensus 178 -h~~~p~~-~l~E---i~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~-~v~~v~--g~~l~ 244 (258)
...++.. .+.+ +.+.++|- +++...... -...++......+.+.|++.|.. ....++ .+|.+
T Consensus 82 ~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g---~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvP 151 (275)
T cd00315 82 KGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKG---LLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVP 151 (275)
T ss_pred CCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcc---hhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCC
Confidence 1123332 3334 44444554 333222110 00111122357788888888854 333333 56666
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.37 Score=45.01 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=32.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVP 148 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~ 148 (258)
+++++.-...+++.++|.=||.|..+.++.+. +...|+|+|..+
T Consensus 10 ~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~ 54 (305)
T TIGR00006 10 DEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDP 54 (305)
T ss_pred HHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCH
Confidence 33444334567889999999999999888753 335899999764
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.4 Score=42.23 Aligned_cols=91 Identities=20% Similarity=0.105 Sum_probs=56.3
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCC-C----cEEEEeCCCCC---------------CceeeecCCCC---------C
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGV-S----DSIGIDLVPRP---------------PLVIKGDFHAQ---------P 162 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~-~----~v~GvD~s~~~---------------~~~~~aDa~~L---------P 162 (258)
.++++.+|||+++.+|.-+..|-+... . .|++-|.+..+ ..+...|+... +
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 467899999999999998766654321 1 58888864311 11222222221 2
Q ss_pred CCCCCeeEEEec-------cccccCCh-----------------HHHHHHHHhcccCCcEEEEE
Q 025071 163 FDNGTFDFEFSN-------VFDHALYP-----------------WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 163 f~d~SFD~V~s~-------~l~h~~~p-----------------~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+-..||=|++. .+.+..+- .+.+..-.|.|||||.++-.
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 344579988874 23332211 13457788999999999885
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.8 Score=45.92 Aligned_cols=99 Identities=20% Similarity=0.237 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCC---CCCCEEEEECCCCCHHHHHHH---hc--CCCcEEEEeCCCCC---------------CceeeecC
Q 025071 102 RFFQDLKQRHFL---FNESKALSIGARVGQEVAALK---LV--GVSDSIGIDLVPRP---------------PLVIKGDF 158 (258)
Q Consensus 102 ~~~~~L~~~~~l---~~~~~VLDIGcGtG~~~~~L~---~~--g~~~v~GvD~s~~~---------------~~~~~aDa 158 (258)
.++..|++...- +....|+-+|+|-|-++.+.- +. ...++++|+.++.. ..++..|.
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DM 430 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDM 430 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccc
Confidence 455556554221 113468889999999875432 11 12358899977642 23577899
Q ss_pred CCCCCCCCCeeEEEec---cc-cccCChHHHHHHHHhcccCCcEEEE
Q 025071 159 HAQPFDNGTFDFEFSN---VF-DHALYPWKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 159 ~~LPf~d~SFD~V~s~---~l-~h~~~p~~~l~Ei~RVLKPGG~lii 201 (258)
..++-+++..|+++|. +| +.-..| +.+.-+.+.|||+|+.+=
T Consensus 431 R~w~ap~eq~DI~VSELLGSFGDNELSP-ECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 431 RKWNAPREQADIIVSELLGSFGDNELSP-ECLDGAQKFLKPDGISIP 476 (649)
T ss_pred cccCCchhhccchHHHhhccccCccCCH-HHHHHHHhhcCCCceEcc
Confidence 9998557999999995 34 333344 467889999999987654
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.21 E-value=13 Score=36.87 Aligned_cols=92 Identities=18% Similarity=0.176 Sum_probs=56.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHh----cC-CCcEEEEeCCCC----------------CCceeeecCCCCCC-----CCCC
Q 025071 114 FNESKALSIGARVGQEVAALKL----VG-VSDSIGIDLVPR----------------PPLVIKGDFHAQPF-----DNGT 167 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~----~g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf-----~d~S 167 (258)
.+..+|.|-.||+|.......+ .. ....+|.++.+. ......+|...-|. ..+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 4566999999999987543322 11 124788886431 11223333333332 3467
Q ss_pred eeEEEec---c-ccccC---------------------Ch-HHHHHHHHhcccCCcEEEEEecc
Q 025071 168 FDFEFSN---V-FDHAL---------------------YP-WKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 168 FD~V~s~---~-l~h~~---------------------~p-~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
||+|+++ + -.+.. .. ..+++++.+.|+|||+..+.++.
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 9999986 2 11110 01 45789999999999988877663
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.095 Score=41.88 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=26.4
Q ss_pred CeeEEEec------cccccCC-hHHHHHHHHhcccCCcEEEEE
Q 025071 167 TFDFEFSN------VFDHALY-PWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 167 SFD~V~s~------~l~h~~~-p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.||+|+|- +++|..+ -..+++.+++.|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 38999983 3444322 235789999999999999996
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.4 Score=42.60 Aligned_cols=92 Identities=23% Similarity=0.288 Sum_probs=62.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCCC----------------------CceeeecCCCCC-CCCCCe
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPRP----------------------PLVIKGDFHAQP-FDNGTF 168 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~~----------------------~~~~~aDa~~LP-f~d~SF 168 (258)
++...+||-+|-|.|-.++.|.+++ ..+++-+|+.|.. ..++..|+.++= =..+.|
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 3455789999999999999998876 6789999976421 124555554332 234689
Q ss_pred eEEEecccccc------CChHHHHHHHHhcccCCcEEEEEec
Q 025071 169 DFEFSNVFDHA------LYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 169 D~V~s~~l~h~------~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|+|+..-.+-- .....+..-..|-|+++|.++++..
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 99998411100 0123456677889999999999753
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.87 Score=46.37 Aligned_cols=63 Identities=24% Similarity=0.313 Sum_probs=42.2
Q ss_pred CCeeEEEeccccccCChH----HHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCC
Q 025071 166 GTFDFEFSNVFDHALYPW----KFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGF 241 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~----~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~ 241 (258)
..||+++...|.-..+|+ .++++|+|.++|||.++-.. +...+.+-+.++|+.- .+..++
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t---------------~a~~vr~~l~~~GF~v-~~~~~~ 228 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT---------------SAGFVRRGLQEAGFTV-RKVKGF 228 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee---------------hHHHHHHHHHHcCCee-eecCCC
Confidence 569999987665555564 57899999999999887432 2345566666666643 233455
Q ss_pred CCe
Q 025071 242 GLD 244 (258)
Q Consensus 242 ~l~ 244 (258)
|-+
T Consensus 229 g~k 231 (662)
T PRK01747 229 GRK 231 (662)
T ss_pred chh
Confidence 554
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=90.33 E-value=1.2 Score=41.89 Aligned_cols=121 Identities=16% Similarity=0.139 Sum_probs=70.3
Q ss_pred hHhhhCchhHHHHHHHHHHHHHHHHHhc----CCC---------CCCEEEEECCCCCHHHHHHHhcC-------C-----
Q 025071 84 LRAVWTTRDWERKVRVFSRFFQDLKQRH----FLF---------NESKALSIGARVGQEVAALKLVG-------V----- 138 (258)
Q Consensus 84 l~~~W~~~~w~~~~~~~~~~~~~L~~~~----~l~---------~~~~VLDIGcGtG~~~~~L~~~g-------~----- 138 (258)
+.+.|..|+--.+.-.|+.+|..+.+.. ... +..+||+||-|.|....+|+..= .
T Consensus 42 ~L~AYA~RWSPsRAL~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~ 121 (315)
T PF11312_consen 42 KLEAYAARWSPSRALAYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPS 121 (315)
T ss_pred hhhhheeccCHHHHHHHHHHHHHHHHHHHhhccccccccccccccCceEEEECCChHHHHHHHHHHHhhcccccCCcccc
Confidence 4445554444555566788888765421 111 12589999999999876665320 0
Q ss_pred ---------CcEEEEeCCCC-------------C---------------------CceeeecCCCCCCCC-------CCe
Q 025071 139 ---------SDSIGIDLVPR-------------P---------------------PLVIKGDFHAQPFDN-------GTF 168 (258)
Q Consensus 139 ---------~~v~GvD~s~~-------------~---------------------~~~~~aDa~~LPf~d-------~SF 168 (258)
-+++.||+.+. + ..+.+.|+-.+.-++ .+-
T Consensus 122 ~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~ 201 (315)
T PF11312_consen 122 GVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSP 201 (315)
T ss_pred cccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccccccCCccceeeeEEecccccCChHHHHHHhccchh
Confidence 16889997431 0 013455555444322 234
Q ss_pred eEEEec-c-----ccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 169 DFEFSN-V-----FDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 169 D~V~s~-~-----l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|+|... . -.+...-.+++..+..+++||-.+.|.-+
T Consensus 202 ~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 202 DLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 555431 1 12233345788999999999998888754
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.75 Score=37.33 Aligned_cols=67 Identities=24% Similarity=0.377 Sum_probs=46.2
Q ss_pred CCeeEEEeccccccCCh----HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCC
Q 025071 166 GTFDFEFSNVFDHALYP----WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGF 241 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p----~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~ 241 (258)
..||+|+...|.-..+| ..++++++|.++|||.+.-.. +...+.+-+.++|+.- ....|+
T Consensus 49 ~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys---------------~a~~Vr~~L~~aGF~v-~~~~g~ 112 (124)
T PF05430_consen 49 ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS---------------SAGAVRRALQQAGFEV-EKVPGF 112 (124)
T ss_dssp T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES-----------------BHHHHHHHHHCTEEE-EEEE-S
T ss_pred ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee---------------chHHHHHHHHHcCCEE-EEcCCC
Confidence 68999998766555555 468899999999999775532 2356888899999874 555688
Q ss_pred CCeEEEE
Q 025071 242 GLDTEVV 248 (258)
Q Consensus 242 ~l~~~~~ 248 (258)
|-++++.
T Consensus 113 g~Kr~~~ 119 (124)
T PF05430_consen 113 GRKREML 119 (124)
T ss_dssp TTSSEEE
T ss_pred CCcchhe
Confidence 8876544
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.99 E-value=1.1 Score=43.69 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=57.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCCC---------------CceeeecCCCCC---CCCCCeeEEEe
Q 025071 114 FNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPRP---------------PLVIKGDFHAQP---FDNGTFDFEFS 173 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~~---------------~~~~~aDa~~LP---f~d~SFD~V~s 173 (258)
.++.||||+.+.+|.-+.+++.. +-..|++.|.+... ..++..|..+.| |+. +||-|+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLL 318 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLL 318 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeee
Confidence 46789999999999977666542 12358999965421 135667777666 555 9999876
Q ss_pred cc------c-------cccC----------ChHHHHHHHHhcccCCcEEEEE
Q 025071 174 NV------F-------DHAL----------YPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~------l-------~h~~----------~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+ + .... -..+.+-.....+||||+++..
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYS 370 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYS 370 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEE
Confidence 31 1 1110 1124455667789999999885
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.41 E-value=1.6 Score=42.06 Aligned_cols=99 Identities=15% Similarity=0.049 Sum_probs=61.0
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCC--C--------------------------------------cEEEEe
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLVGV--S--------------------------------------DSIGID 145 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~--~--------------------------------------~v~GvD 145 (258)
.++....-.++..++|-=||+|.+....+-.+. + ..+|+|
T Consensus 182 Ail~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~D 261 (381)
T COG0116 182 AILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSD 261 (381)
T ss_pred HHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEec
Confidence 333333334557899999999998765543321 0 267999
Q ss_pred CCCCC----------------CceeeecCCCCCCCCCCeeEEEec---c--ccccCChHH----HHHHHHhcccCCcEEE
Q 025071 146 LVPRP----------------PLVIKGDFHAQPFDNGTFDFEFSN---V--FDHALYPWK----FVGEIERTLKPAGVCV 200 (258)
Q Consensus 146 ~s~~~----------------~~~~~aDa~~LPf~d~SFD~V~s~---~--l~h~~~p~~----~l~Ei~RVLKPGG~li 200 (258)
+++.. ..+.++|+..++=+-+++|+|+|| . +..-..... +.+++.|+++--+..+
T Consensus 262 id~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v 341 (381)
T COG0116 262 IDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYV 341 (381)
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 87521 247888988776444799999997 2 221122222 3345566666666777
Q ss_pred EEec
Q 025071 201 LHVA 204 (258)
Q Consensus 201 i~v~ 204 (258)
++.+
T Consensus 342 ~tt~ 345 (381)
T COG0116 342 FTTS 345 (381)
T ss_pred EEcc
Confidence 7643
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.21 E-value=1.4 Score=40.69 Aligned_cols=84 Identities=18% Similarity=0.278 Sum_probs=48.4
Q ss_pred CCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeee---cCCCCCCCCCCeeEEEecccccc
Q 025071 114 FNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKG---DFHAQPFDNGTFDFEFSNVFDHA 179 (258)
Q Consensus 114 ~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~a---Da~~LPf~d~SFD~V~s~~l~h~ 179 (258)
.++.+||=.||| .|..+..+++ .|...|+++|.++... .++.. +..++.-..+.||+|+..+ -
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~-G-- 244 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS-G-- 244 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC-C--
Confidence 467899999876 2333444444 5765788888754211 11111 1111111123489888742 1
Q ss_pred CChHHHHHHHHhcccCCcEEEEE
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
. ...+.+..+.|+|||++++.
T Consensus 245 -~-~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 245 -H-PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred -C-HHHHHHHHHHhhcCCEEEEE
Confidence 1 23567889999999998875
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=88.68 E-value=1.6 Score=40.71 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCHHHHHHH--hcCCCcEEEEeCCC
Q 025071 116 ESKALSIGARVGQEVAALK--LVGVSDSIGIDLVP 148 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~--~~g~~~v~GvD~s~ 148 (258)
.-++||||||...+-..|. ..|+ +.+|.|+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~ 136 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDP 136 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-H
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCH
Confidence 4689999999987655453 3576 799999853
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=87.50 E-value=1 Score=44.88 Aligned_cols=88 Identities=22% Similarity=0.238 Sum_probs=54.2
Q ss_pred CCCCEEEEECCCCCHH-HHHH-HhcCCCcEEEEeCCCCC--------CceeeecCCC-----------C--C--------
Q 025071 114 FNESKALSIGARVGQE-VAAL-KLVGVSDSIGIDLVPRP--------PLVIKGDFHA-----------Q--P-------- 162 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~-~~~L-~~~g~~~v~GvD~s~~~--------~~~~~aDa~~-----------L--P-------- 162 (258)
.++.+|+=+|||.=.. +... ...|. .|+++|.++.. ..++..|..+ + .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 3688999999996544 3333 34676 79999986421 1112111110 1 0
Q ss_pred CCC--CCeeEEEeccc-cccCChHHHHHHHHhcccCCcEEEEE
Q 025071 163 FDN--GTFDFEFSNVF-DHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 163 f~d--~SFD~V~s~~l-~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|.+ ..+|+|+.++. .....|..+.+|+.+.+||||+++..
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 111 36999998643 33334544459999999999998765
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.15 E-value=0.87 Score=44.85 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=24.9
Q ss_pred EEEEECCCCCHHHHHHHhcCCCcEEEEeC
Q 025071 118 KALSIGARVGQEVAALKLVGVSDSIGIDL 146 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~~~v~GvD~ 146 (258)
-|||||+|||.++....+.|.+.|++++.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~Ev 97 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEV 97 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehh
Confidence 59999999999887777778778999984
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=86.63 E-value=1.5 Score=41.17 Aligned_cols=84 Identities=20% Similarity=0.173 Sum_probs=51.8
Q ss_pred CCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCc---------eeeecCCC------CCCCC-CCeeEEEecc
Q 025071 114 FNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPL---------VIKGDFHA------QPFDN-GTFDFEFSNV 175 (258)
Q Consensus 114 ~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~---------~~~aDa~~------LPf~d-~SFD~V~s~~ 175 (258)
..+++|+=+|||+ |..+..+++ .|...|+.+|.++.+.. ......++ +-... .-||+|+-.+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 3445899999996 555444544 67788999998754321 11111110 00111 2589998641
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
= -..++.++.+++||||.+++.
T Consensus 247 G-----~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 247 G-----SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred C-----CHHHHHHHHHHhcCCCEEEEE
Confidence 1 133678999999999998876
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=86.41 E-value=4.3 Score=34.82 Aligned_cols=87 Identities=22% Similarity=0.146 Sum_probs=52.1
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCCCC-------CCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHAQP-------FDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~LP-------f~d~SFD~V~s~ 174 (258)
..+.++.+||..|+|+ |..+..+++ .| .+|++++.++..... ...+..... ...+.+|+++.+
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 3446788999999996 555555554 46 578888875321100 001111111 124579999874
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+- . ...+..+.+.|+++|.++...
T Consensus 209 ~~----~-~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 209 VG----G-PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CC----C-HHHHHHHHHhcccCCEEEEEc
Confidence 21 1 145678889999999988753
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.37 E-value=0.63 Score=44.42 Aligned_cols=75 Identities=23% Similarity=0.142 Sum_probs=55.6
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------------------CCceeeecCCCCCCC-C
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------------------PPLVIKGDFHAQPFD-N 165 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------------------~~~~~~aDa~~LPf~-d 165 (258)
....+|..|.|-=.|||.+...-+..|. .|+|.|+.-. ...++.+|..+-|.. +
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence 4678899999999999998877777774 7999997421 013678888888874 5
Q ss_pred CCeeEEEeccccccCChHHHHHHHHhcc
Q 025071 166 GTFDFEFSNVFDHALYPWKFVGEIERTL 193 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~~~l~Ei~RVL 193 (258)
..||+|+| ||.--++|-.|.+
T Consensus 283 ~~fDaIvc-------DPPYGVRe~~rk~ 303 (421)
T KOG2671|consen 283 LKFDAIVC-------DPPYGVREGARKT 303 (421)
T ss_pred ceeeEEEe-------CCCcchhhhhhhh
Confidence 69999999 3555556665544
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=86.28 E-value=6.3 Score=33.39 Aligned_cols=67 Identities=30% Similarity=0.317 Sum_probs=43.6
Q ss_pred CCCCCCeeEEEeccccccC-----C----------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHH
Q 025071 162 PFDNGTFDFEFSNVFDHAL-----Y----------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKL 226 (258)
Q Consensus 162 Pf~d~SFD~V~s~~l~h~~-----~----------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~l 226 (258)
....+.||.|+-| +.|.- . -..+++-+.++|+++|.+.++.-.. ..| +.=.+.++
T Consensus 70 ~~~~~~FDrIiFN-FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~---~py------~~W~i~~l 139 (166)
T PF10354_consen 70 RLKNQRFDRIIFN-FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG---QPY------DSWNIEEL 139 (166)
T ss_pred cccCCcCCEEEEe-CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC---CCC------ccccHHHH
Confidence 4567899999885 33332 0 1246788999999999999986432 122 22335577
Q ss_pred hhcCceEEeeee
Q 025071 227 FRESELVAVRKV 238 (258)
Q Consensus 227 f~~~~~~~v~~v 238 (258)
.++.|++-+..+
T Consensus 140 A~~~gl~l~~~~ 151 (166)
T PF10354_consen 140 AAEAGLVLVRKV 151 (166)
T ss_pred HHhcCCEEEEEe
Confidence 777887655543
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=86.23 E-value=4 Score=37.78 Aligned_cols=86 Identities=17% Similarity=0.038 Sum_probs=50.5
Q ss_pred hcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCC--------CCCCCeeE
Q 025071 110 RHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQP--------FDNGTFDF 170 (258)
Q Consensus 110 ~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LP--------f~d~SFD~ 170 (258)
...+.++.+||=.|||. |..+..+++ .|...|+++|.++... .++ +..+-. .....+|+
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i--~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTV--NSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEE--cCCCcCHHHHHHHHhCCCCCCE
Confidence 34467789999998753 334444444 5654589998654211 111 111111 12235898
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+..+= . ...+.+..+.|++||++++.
T Consensus 249 vid~~g----~-~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 249 VIDAVG----R-PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEECCC----C-HHHHHHHHHHhccCCEEEEE
Confidence 886421 1 23567888999999998875
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=86.15 E-value=1.9 Score=39.30 Aligned_cols=81 Identities=19% Similarity=0.115 Sum_probs=47.1
Q ss_pred CCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCCce----eeecCCCCCCCCCCeeEEEeccccccCChHHHHHH
Q 025071 115 NESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPPLV----IKGDFHAQPFDNGTFDFEFSNVFDHALYPWKFVGE 188 (258)
Q Consensus 115 ~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~~~----~~aDa~~LPf~d~SFD~V~s~~l~h~~~p~~~l~E 188 (258)
++.+||=+||| .|..+..+++ .|...|+++|.++..... ...|..+. ..+.+|+|+-++= . ...+.+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~--~~~g~Dvvid~~G----~-~~~~~~ 216 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKD--PRRDYRAIYDASG----D-PSLIDT 216 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhc--cCCCCCEEEECCC----C-HHHHHH
Confidence 56789999886 3444444544 576557777764322110 00111110 2346899987421 1 235678
Q ss_pred HHhcccCCcEEEEE
Q 025071 189 IERTLKPAGVCVLH 202 (258)
Q Consensus 189 i~RVLKPGG~lii~ 202 (258)
+.+.|+|||++++.
T Consensus 217 ~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 217 LVRRLAKGGEIVLA 230 (308)
T ss_pred HHHhhhcCcEEEEE
Confidence 89999999998865
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=86.08 E-value=1 Score=37.44 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=30.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
.+.+|+|||++-|..+.++.-.|...|++++.++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~ 61 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEE 61 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCH
Confidence 5789999999999999999888988999999864
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.91 E-value=2.1 Score=39.63 Aligned_cols=88 Identities=15% Similarity=0.004 Sum_probs=50.0
Q ss_pred CCCCCEEEEECCCC-CHHHHHHHh--cCCCcEEEEeCCCCCCcee-eecCC-CC-CCCC-CCeeEEEeccccccCChHHH
Q 025071 113 LFNESKALSIGARV-GQEVAALKL--VGVSDSIGIDLVPRPPLVI-KGDFH-AQ-PFDN-GTFDFEFSNVFDHALYPWKF 185 (258)
Q Consensus 113 l~~~~~VLDIGcGt-G~~~~~L~~--~g~~~v~GvD~s~~~~~~~-~aDa~-~L-Pf~d-~SFD~V~s~~l~h~~~p~~~ 185 (258)
..++.+||=+|||+ |..+..+++ .|..+|+++|.++...... .++.. .. .+.+ ..+|+|+-.+ -.. .-...
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~-G~~-~~~~~ 238 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECV-GGR-GSQSA 238 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECC-CCC-ccHHH
Confidence 46788999999874 323334333 3555799999765332111 11110 00 1112 2489888632 110 01345
Q ss_pred HHHHHhcccCCcEEEEE
Q 025071 186 VGEIERTLKPAGVCVLH 202 (258)
Q Consensus 186 l~Ei~RVLKPGG~lii~ 202 (258)
+.+..+.|+|||++++.
T Consensus 239 ~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 239 INQIIDYIRPQGTIGLM 255 (341)
T ss_pred HHHHHHhCcCCcEEEEE
Confidence 78899999999998765
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.38 E-value=2.9 Score=37.98 Aligned_cols=89 Identities=19% Similarity=0.119 Sum_probs=52.2
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------------CCceee-----ecCCCCCCCCCC-eeEE
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------------PPLVIK-----GDFHAQPFDNGT-FDFE 171 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------------~~~~~~-----aDa~~LPf~d~S-FD~V 171 (258)
..+||++|+|+|-.....+.....+|+-.|.... ...+.+ +++....+--.. ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 4579999999996555444433346666664321 001111 122222222222 9999
Q ss_pred Eec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 172 FSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 172 ~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++. ++-+-..++..+.=++-.|-.+|.+++...
T Consensus 167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 985 665555667777788888899995555443
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.15 E-value=4.6 Score=37.08 Aligned_cols=91 Identities=22% Similarity=0.242 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhc-CC-CcEEEEeCCCCC-----------Cc--eeeecCCCCCCC----CCCeeEE
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLV-GV-SDSIGIDLVPRP-----------PL--VIKGDFHAQPFD----NGTFDFE 171 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~-g~-~~v~GvD~s~~~-----------~~--~~~aDa~~LPf~----d~SFD~V 171 (258)
..++++.+||=+|++.|......++. |. .-|++++.++.. .+ -+..|+. .|.. =...|+|
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDAr-hP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDAR-HPAKYRMLVGMVDVI 230 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCC-CchheeeeeeeEEEE
Confidence 35789999999999999987776653 32 248899987542 11 1334443 3432 2478888
Q ss_pred EeccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 172 FSNVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 172 ~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++.+- +-.....+.-...--||+||.+++.+
T Consensus 231 FaDva-qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 231 FADVA-QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eccCC-CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 88532 11111122346667899999999875
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=84.93 E-value=6.1 Score=35.84 Aligned_cols=83 Identities=24% Similarity=0.302 Sum_probs=49.1
Q ss_pred CCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeec---CCCCCCCCCCeeEEEeccccccC
Q 025071 115 NESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGD---FHAQPFDNGTFDFEFSNVFDHAL 180 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aD---a~~LPf~d~SFD~V~s~~l~h~~ 180 (258)
++.+||..|||. |..+..+++ .|...+++++.++... .++..+ ...+.-..+.+|+|+..+-
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g---- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG---- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC----
Confidence 678999998875 555554544 5654688887653210 111111 1112212234899887421
Q ss_pred ChHHHHHHHHhcccCCcEEEEE
Q 025071 181 YPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
....++++.+.|+++|+++..
T Consensus 241 -~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 241 -APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred -CHHHHHHHHHHHhcCCEEEEE
Confidence 124568999999999998764
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=84.56 E-value=5.7 Score=35.83 Aligned_cols=87 Identities=14% Similarity=0.002 Sum_probs=50.1
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCC----CCCCCCeeEEEecc
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQ----PFDNGTFDFEFSNV 175 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~L----Pf~d~SFD~V~s~~ 175 (258)
..+.++.+||-+|+|. |..+..+++ .|...++.++.++... .++..+.... ...++.+|+++..+
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~ 234 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEAT 234 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECC
Confidence 3456788999998652 444444444 4653377776543210 1111111110 11345689998742
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
- ....+.++.+.|+++|+++..
T Consensus 235 ~-----~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 235 G-----VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred C-----ChHHHHHHHHHHhcCCEEEEE
Confidence 1 134678999999999998765
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=84.09 E-value=1.1 Score=40.86 Aligned_cols=72 Identities=14% Similarity=0.196 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHH-HHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCC
Q 025071 100 FSRFFQDLKQRHFLFNESKALSIGARVGQEVAA-LKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFD 164 (258)
Q Consensus 100 ~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~-L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~ 164 (258)
+..+|+.+.+ .+.+..+|+|||||.--++.. +.......++|.|++.. +..+...|...-+ +
T Consensus 92 Ld~fY~~if~--~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~ 168 (251)
T PF07091_consen 92 LDEFYDEIFG--RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-P 168 (251)
T ss_dssp HHHHHHHHCC--CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-T
T ss_pred HHHHHHHHHh--cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-C
Confidence 4555555543 455688999999998766543 22222347999998642 1234555665543 3
Q ss_pred CCCeeEEEec
Q 025071 165 NGTFDFEFSN 174 (258)
Q Consensus 165 d~SFD~V~s~ 174 (258)
....|+.+.-
T Consensus 169 ~~~~DlaLll 178 (251)
T PF07091_consen 169 KEPADLALLL 178 (251)
T ss_dssp TSEESEEEEE
T ss_pred CCCcchhhHH
Confidence 4578998873
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=82.35 E-value=2.4 Score=35.87 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
..++++++... -.++..|||-=||+|..+.+..+.| .+.+|+|+++
T Consensus 178 ~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~ 223 (231)
T PF01555_consen 178 VELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDE 223 (231)
T ss_dssp HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSH
T ss_pred HHHHHHHHHhh-hccceeeehhhhccChHHHHHHHcC-CeEEEEeCCH
Confidence 45677776543 3578899999999999988877777 4799999864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=80.99 E-value=5.3 Score=36.45 Aligned_cols=46 Identities=24% Similarity=0.211 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc------CCCcEEEEeCC
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV------GVSDSIGIDLV 147 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~------g~~~v~GvD~s 147 (258)
.++..+.+.+.+.+...++|.|||.|.++.+++.. ....++-||..
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 45555666677778889999999999999988753 22367889964
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=80.90 E-value=4.2 Score=36.89 Aligned_cols=86 Identities=17% Similarity=0.058 Sum_probs=49.1
Q ss_pred CCCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCCC--------CCCCeeEEEec
Q 025071 112 FLFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQPF--------DNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf--------~d~SFD~V~s~ 174 (258)
.+.++.+||..|+| .|..+..+++ .|...+++++.+..... -...+..+..+ +++.+|+++..
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~ 243 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEA 243 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEc
Confidence 45678899997765 2555555544 46446778765421110 00111111111 23579999874
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+- ....+.+..+.|+++|+++..
T Consensus 244 ~g-----~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 244 VG-----FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 21 124678999999999998754
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=80.57 E-value=5.8 Score=36.97 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=49.7
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCC-----CCCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQ-----PFDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~L-----Pf~d~SFD~V~s~ 174 (258)
..+.++.+||=.|+|. |..+..+++ .|...|+++|.++... .++..+.+++ ...++.+|+|+..
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~ 266 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEM 266 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEEC
Confidence 4466788999998762 333444444 5765689998754221 1111110100 0112358988864
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+ - . ...+.+..+.|++||+++..
T Consensus 267 ~-G---~-~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 267 A-G---S-VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred C-C---C-hHHHHHHHHHHhcCCEEEEE
Confidence 2 1 1 23567889999999998765
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=80.30 E-value=3 Score=38.57 Aligned_cols=82 Identities=23% Similarity=0.242 Sum_probs=48.1
Q ss_pred CCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCC---CCC--------CceeeecCCCCCC----CCCCeeEEEecc
Q 025071 113 LFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLV---PRP--------PLVIKGDFHAQPF----DNGTFDFEFSNV 175 (258)
Q Consensus 113 l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s---~~~--------~~~~~aDa~~LPf----~d~SFD~V~s~~ 175 (258)
..++.+||-+|||. |..+..+++ .|. +|++++.+ +.. ...+ +..+-++ ..+.+|+|+..+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~ 246 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEAT 246 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECc
Confidence 34678999999863 444444544 565 79998863 211 0111 1111010 124589888742
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
= . ...+.+..++|++||.+++.
T Consensus 247 g----~-~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 247 G----V-PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred C----C-HHHHHHHHHHccCCcEEEEE
Confidence 1 1 23568899999999988764
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-07
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 153 VIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRR--- 208
V G F P ++ ++DF +S F H+ K E R LKP GV + +
Sbjct: 136 VKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGID 195
Query: 209 -------ADKYSANDLFSVKPLVKLFRESELVAVRKVD 239
D+ +D+ S+ L +E LV +R
Sbjct: 196 KSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFS 233
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-07
Identities = 39/191 (20%), Positives = 65/191 (34%), Gaps = 43/191 (22%)
Query: 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP--------RPPLV 153
+ +L+ L E + + IG G+ LK+ IG++ R V
Sbjct: 34 AYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKRGVFV 88
Query: 154 IKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHV--------- 203
+KG P + +FDF P + + E R LK G ++ +
Sbjct: 89 LKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGR 148
Query: 204 ALSRRADKYSAND---LFSVKPLVKLFRES--ELVAVRKV---------------DGFGL 243
+ +K FS + L+ L R++ E V + +G+G
Sbjct: 149 EYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFKHPSELSEIEPVKEGYGE 208
Query: 244 DTEVVFRKKKK 254
VV R KK
Sbjct: 209 GAFVVIRGTKK 219
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-06
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 11/97 (11%)
Query: 154 IKGDFHAQPFDNGTFDFEFS-NVFDHALYPWKFVGEIERTLKPAGVCVLHV--------- 203
IKGD + PF+N F+ + N + P + + EI+R LK G + +
Sbjct: 103 IKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRE 162
Query: 204 -ALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVD 239
+ R K + +L +E V +
Sbjct: 163 NSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIG 199
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-06
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 153 VIKGDFHAQPFDNGTFDFEFS-NVFDHALYP--WKFVGEIERTLKPAGVCVLHVALSRRA 209
+ KGD PF + + F +S H + + EI+R LKP G+ ++ L+ +
Sbjct: 75 ISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINF-LTTKD 133
Query: 210 DKYSANDLFSVKPLVKLFRESELV 233
++Y+ + ++L R +++
Sbjct: 134 ERYNKGEKIGEGEFLQLERGEKVI 157
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 4e-06
Identities = 21/116 (18%), Positives = 33/116 (28%), Gaps = 9/116 (7%)
Query: 143 GIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202
DL P V D P ++ + D + F+ E R LKP G+ +
Sbjct: 91 CFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVA 150
Query: 203 VALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKKKKKSNS 258
SR V+ ++ + V K F+K
Sbjct: 151 EVSSR---------FEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKTGPPLVG 197
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 9e-06
Identities = 14/89 (15%), Positives = 32/89 (35%)
Query: 153 VIKGDFHAQPFDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKY 212
I G PF N D +S + + + + E + LK G + A +++
Sbjct: 100 GITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASWFTSERP 159
Query: 213 SANDLFSVKPLVKLFRESELVAVRKVDGF 241
+ + F + ++ + + G+
Sbjct: 160 AEIEDFWMDAYPEISVIPTCIDKMERAGY 188
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 153 VIKGDFHAQPFDNGTFDFEFS-NVFDHALYPWKFVGEIERTLKPAGVCVLH 202
D PF++ +FD ++ H + + E+ R L+P G +
Sbjct: 115 FSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIA 165
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 18/121 (14%), Positives = 32/121 (26%), Gaps = 22/121 (18%)
Query: 132 ALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFS---NVFDHALYPWKFVGE 188
A + V ++ I D + F FD +S + K +
Sbjct: 94 ANERVSGNNKII---------FEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQK 144
Query: 189 IERTLKPAGVCVLH----------VALSRRADKYSANDLFSVKPLVKLFRESELVAVRKV 238
+ LKP G ++ + K L +V+ + V
Sbjct: 145 CYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSK 204
Query: 239 D 239
D
Sbjct: 205 D 205
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 31/183 (16%)
Query: 93 WERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP-- 150
+E K + +H + L IG G AA+K G GI+ P
Sbjct: 10 YEEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENGT-RVSGIEAFPEAAE 68
Query: 151 ------PLVIKGDFHAQ--PFDNGTFDF-EFSNVFDHALYPWKFVGEIERTLKPAGVCVL 201
V+ GD P++ FD F +V +H PW + +++ +K GV +
Sbjct: 69 QAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILA 128
Query: 202 HV----ALSRRAD----KYSANDL----------FSVKPLVKLFRESELVAVRKVDGFGL 243
+ +S A ++ + F+ ++++F ++ + KVD +
Sbjct: 129 SIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYS-ISKVDRVYV 187
Query: 244 DTE 246
D +
Sbjct: 188 DHK 190
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 13/121 (10%)
Query: 142 IGIDLVP--------RPPL-VIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIER 191
++ P + G + + D S H + K E++R
Sbjct: 60 YAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQR 119
Query: 192 TLKPAGVCVLHVALSRRADKYSANDLFSV--KPLVKLFRESELVAVRKVDGFGLDTEVVF 249
++ + +L R A + D F + ++ E + + + + + F
Sbjct: 120 IIRDGTIVLL-TFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVEAIPF 178
Query: 250 R 250
Sbjct: 179 L 179
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 3e-04
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 153 VIKGDFHAQPFDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202
I G PF N D +S + + + + E + LK G +
Sbjct: 100 GIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVS 149
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 5e-04
Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 17/103 (16%)
Query: 117 SKALSIGARVGQEVAAL-KLVGVSDSIGIDLVP-----------RPPL----VIKGDFHA 160
+K L G +G + L K ++ ID+ P + + ++ + +
Sbjct: 39 AKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFS 98
Query: 161 QPFDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLH 202
PF++ +FD F V +H P + + +++ LKP G +
Sbjct: 99 LPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVI 141
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 19/102 (18%)
Query: 153 VIKGDFHAQPFDNGTFD----FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRR 208
+ PFD G E + E R LK G V
Sbjct: 171 SRVCNMLDTPFDKGAVTASWNNE---STMYVDLH-DLFSEHSRFLKVGGRYVTITGCWNP 226
Query: 209 A-----------DKYSANDLFSVKPLVKLFRESELVAVRKVD 239
+ + ++ S + ++ ++ LV VD
Sbjct: 227 RYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVD 268
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 38.9 bits (90), Expect = 8e-04
Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 156 GDFHAQPFDNGTFDFEFSN-VFDHALYPW--KFVGEIERTLKPAGVCVLHVALSRRADKY 212
+ ++D + V H +F+ + +L+P G+ V+ +++
Sbjct: 135 CGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL 194
Query: 213 SAND---LFSVKPLVKLFRESELVAVRKVDGFGLDTE 246
D + + ++ + L + + L E
Sbjct: 195 DDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDE 231
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 258 | |||
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.8 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.79 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.79 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.78 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.78 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.78 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.78 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.77 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.77 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.77 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.77 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.77 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.77 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.76 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.76 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.75 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.75 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.75 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.75 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.74 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.74 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.73 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.73 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.73 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.73 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.73 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.73 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.72 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.72 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.72 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.72 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.72 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.71 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.71 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.71 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.71 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.7 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.7 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.7 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.7 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.69 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.69 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.69 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.69 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.68 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.68 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.68 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.68 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.67 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.67 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.67 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.67 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.67 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.66 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.66 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.66 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.66 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.65 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.65 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.64 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.64 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.64 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.63 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.63 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.63 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.62 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.62 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.62 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.61 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.61 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.61 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.59 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.59 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.58 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.58 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.58 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.58 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.58 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.57 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.57 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.56 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.54 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.54 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.54 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.53 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.53 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.53 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.52 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.52 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.51 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.51 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.51 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.5 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.5 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.5 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.5 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.5 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.5 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.5 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.5 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.5 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.49 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.49 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.49 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.48 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.48 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.48 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.48 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.48 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.48 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.47 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.47 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.47 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.47 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.47 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.46 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.46 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.46 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.46 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.46 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.45 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.45 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.44 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.44 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.44 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.44 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.44 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.44 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.43 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.43 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.43 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.43 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.42 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.42 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.42 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.41 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.41 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.41 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.41 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.41 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.41 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.4 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.39 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.39 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.39 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.39 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.38 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.38 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.38 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.38 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.38 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.37 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.37 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.36 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.36 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.36 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.35 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.35 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.34 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.33 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.33 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.32 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.32 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.32 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.31 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.31 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.31 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.3 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.3 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.3 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.3 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.29 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.28 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.28 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.28 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.28 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.28 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.28 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.27 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.26 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.26 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.26 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.26 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.25 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.24 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.23 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.23 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.22 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.21 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.21 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.2 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.19 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.19 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.19 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.17 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.15 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.14 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.13 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.12 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.12 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.11 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.11 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.09 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.09 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.09 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.08 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.08 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.08 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.07 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.07 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.07 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.07 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.06 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.06 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.05 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.05 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.04 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.03 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.03 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.02 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.02 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.02 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.01 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.0 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.99 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.99 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.99 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.97 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.96 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.95 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.93 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.9 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.89 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.89 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.89 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.88 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.88 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.88 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.87 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.87 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.86 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.85 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.85 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.85 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.82 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.79 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.77 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.76 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.74 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.73 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.72 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.72 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.68 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.63 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.6 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.55 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.54 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.54 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.54 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.52 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.52 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.47 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.47 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.45 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.42 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.38 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.34 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.34 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.33 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.32 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.3 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.27 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.24 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.23 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.22 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.19 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.18 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.18 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.17 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.17 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.1 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.08 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.0 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.99 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.94 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.91 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.91 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.86 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.73 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.62 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.55 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.34 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.32 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.3 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.3 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.91 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.84 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.7 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.5 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.3 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.94 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.86 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.76 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 94.7 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.32 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.22 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.75 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.33 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.3 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.16 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.15 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.15 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.09 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 92.37 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 92.29 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 92.08 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 91.97 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 91.9 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 91.63 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 91.06 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 90.99 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 90.96 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 90.93 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 90.79 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 90.79 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 90.71 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 90.58 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 90.37 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 89.96 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 89.82 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 89.59 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 89.53 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 89.31 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 89.15 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 88.76 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 88.67 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 88.48 | |
| 4gua_A | 670 | Non-structural polyprotein; viral precursor polypr | 88.41 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 88.18 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 88.16 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 87.99 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 87.92 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 87.84 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 87.55 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 87.31 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 87.27 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 86.48 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 86.44 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 86.33 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 86.18 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 85.68 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 85.64 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 84.55 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 83.95 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 83.9 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 83.76 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 83.7 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 83.4 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 82.81 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 82.72 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 82.28 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 81.94 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 81.25 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 80.75 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 80.22 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 80.1 |
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-19 Score=149.81 Aligned_cols=143 Identities=19% Similarity=0.178 Sum_probs=110.4
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcC--CCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVG--VSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g--~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
.+.++.+|||+|||+|..+..+++.+ ..+|+|+|+++. ...+.++|+.++|+++++||+|+++
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 113 (219)
T 3dh0_A 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMA 113 (219)
T ss_dssp TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEE
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEee
Confidence 45678899999999999999988764 348999998742 2357889999999999999999995
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEeccccCc-CcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEeC
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA-DKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKK 252 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K~ 252 (258)
+++|+.++..+++++.|+|||||.+++........ ........++.+++.++++++|+..+...+-.+....++++|.
T Consensus 114 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~ 193 (219)
T 3dh0_A 114 FTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMIV 193 (219)
T ss_dssp SCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTEEEEEEECC
T ss_pred hhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCceEEEEEEec
Confidence 89999999999999999999999999875432211 1112345578999999999999876665543334457778875
Q ss_pred Cc
Q 025071 253 KK 254 (258)
Q Consensus 253 ~~ 254 (258)
..
T Consensus 194 ~~ 195 (219)
T 3dh0_A 194 KQ 195 (219)
T ss_dssp --
T ss_pred cc
Confidence 44
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=153.11 Aligned_cols=170 Identities=16% Similarity=0.220 Sum_probs=112.5
Q ss_pred cCCCCccHHHHHHHHHhcccChhhHhhhCchh----HHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc
Q 025071 61 IRPGYASYETYIQHQLNKTLNPKLRAVWTTRD----WERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV 136 (258)
Q Consensus 61 ~r~~f~~y~~~l~~~l~~~l~~~l~~~W~~~~----w~~~~~~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~ 136 (258)
+++.|+...++.+..++..++- .+|.... +.+. ...+.+.+++...+.++.+|||||||+|..+..+++.
T Consensus 9 ~~~~Yd~~~~~y~~~~~~~~~~---~y~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~ 82 (273)
T 3bus_A 9 VRQMYDDFTDPFARIWGENLHF---GYWEDAGADVSVDDA---TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATA 82 (273)
T ss_dssp --------------CCGGGCCC---CCCCCSSCCCCHHHH---HHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHH
T ss_pred HHHHHcchHHHHHHHcCCCceE---EecCCCccccCHHHH---HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHh
Confidence 4456666555444434433321 4564422 2222 2334455555545678899999999999999988874
Q ss_pred CCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEE
Q 025071 137 GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVC 199 (258)
Q Consensus 137 g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~l 199 (258)
...+|+|+|+++. ...++.+|+.++|+++++||+|++. +++|+.++..+++|+.|+|||||++
T Consensus 83 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 162 (273)
T 3bus_A 83 RDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTV 162 (273)
T ss_dssp SCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEE
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEE
Confidence 2358999998742 2357889999999999999999995 8999999999999999999999999
Q ss_pred EEEeccccCcC-------------cCCCCCCCChhHHHHHhhcCceEEee
Q 025071 200 VLHVALSRRAD-------------KYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 200 ii~v~~~~~~~-------------~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
++......... .+....+++.+++.++++++|+..+.
T Consensus 163 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 212 (273)
T 3bus_A 163 AIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTS 212 (273)
T ss_dssp EEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred EEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEE
Confidence 98754321100 11244567899999999999976554
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=152.37 Aligned_cols=122 Identities=21% Similarity=0.282 Sum_probs=96.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec-c
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
...++.+|||||||+|..+..+++.+. +|+|+|+++. ...++++|++++||++++||+|+++ +
T Consensus 34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~ 112 (260)
T 1vl5_A 34 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIA 112 (260)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhh
Confidence 356788999999999999999988764 8999998742 1357889999999999999999996 8
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEeccccCcC-------------cCCCCCCCChhHHHHHhhcCceEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHVALSRRAD-------------KYSANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~-------------~y~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
++|+.++..+++|+.|+|||||++++......... .......++.+++.+++.+.|+..
T Consensus 113 l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 184 (260)
T 1vl5_A 113 AHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFEL 184 (260)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEE
T ss_pred hHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeE
Confidence 99999999999999999999999998743221110 001234568899999999888754
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-19 Score=153.31 Aligned_cols=133 Identities=18% Similarity=0.268 Sum_probs=103.6
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCee
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFD 169 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD 169 (258)
.+.+++...+.++.+|||||||+|..+..+++. + .+|+|+|+++. ...++++|+.++|+++++||
T Consensus 44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYG-AHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp HHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence 344444445667889999999999999999875 5 48999998742 23578899999999999999
Q ss_pred EEEec-ccccc--CChHHHHHHHHhcccCCcEEEEEeccccCcCcC----------CCCCCCChhHHHHHhhcCceEEee
Q 025071 170 FEFSN-VFDHA--LYPWKFVGEIERTLKPAGVCVLHVALSRRADKY----------SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 170 ~V~s~-~l~h~--~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y----------~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+|++. +++|+ .++..+++++.|+|||||++++..........+ ....+++.+++.++++++|+..+.
T Consensus 123 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 202 (266)
T 3ujc_A 123 LIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVV 202 (266)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred EEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEE
Confidence 99995 89999 788999999999999999999986432210000 123457899999999999986655
Q ss_pred e
Q 025071 237 K 237 (258)
Q Consensus 237 ~ 237 (258)
.
T Consensus 203 ~ 203 (266)
T 3ujc_A 203 S 203 (266)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.2e-19 Score=150.02 Aligned_cols=121 Identities=15% Similarity=0.114 Sum_probs=97.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------CCceeeecCCCCCCCCCCeeEEEec-cccccCC
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALY 181 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~ 181 (258)
.++.+|||||||+|..+..+++.+. +|+|+|+++. ...++++|++++ +++++||+|++. +++|+.+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcC
Confidence 3677899999999999999988775 7999999742 345788899888 578999999995 8999999
Q ss_pred hHHHHHHHH-hcccCCcEEEEEeccccCc--------------C-------cCCCCCCCChhHHHHHhhcCceEEee
Q 025071 182 PWKFVGEIE-RTLKPAGVCVLHVALSRRA--------------D-------KYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 182 p~~~l~Ei~-RVLKPGG~lii~v~~~~~~--------------~-------~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+..+++|+. |+|||||++++.++..... . .......++.+++.++++++|+..+.
T Consensus 119 ~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 195 (250)
T 2p7i_A 119 PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTY 195 (250)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 999999999 9999999999987643210 0 01122457999999999999976544
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=152.19 Aligned_cols=121 Identities=16% Similarity=0.130 Sum_probs=96.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCC-CCCCCeeEEEec-c
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQP-FDNGTFDFEFSN-V 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LP-f~d~SFD~V~s~-~ 175 (258)
.++.+|||||||+|..+..+++.|. +|+|+|+++. ...++++|+.++| +.+++||+|++. +
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 3467999999999999999998875 8999999741 1247889999998 899999999995 8
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEeccccC----------------------cCcCCCCCCCChhHHHHHhhcCceE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHVALSRR----------------------ADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~----------------------~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
++|+.++..+++|+.|+|||||++++....... .........++.+++.++++++|+.
T Consensus 146 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 225 (285)
T 4htf_A 146 LEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQ 225 (285)
T ss_dssp GGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCE
T ss_pred hhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCCc
Confidence 999999999999999999999999998643210 0011223457899999999999976
Q ss_pred Ee
Q 025071 234 AV 235 (258)
Q Consensus 234 ~v 235 (258)
.+
T Consensus 226 v~ 227 (285)
T 4htf_A 226 IM 227 (285)
T ss_dssp EE
T ss_pred ee
Confidence 44
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-17 Score=140.94 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=105.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCCceeeecCCCCCCCCCCeeEEEec-cccccCChHHHHHHHHh
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIER 191 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~R 191 (258)
..++.+|||||||+|..+..++ .+++|+|+++....+.++|+.++|+++++||+|++. +++ ..++..+++|+.|
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~ 139 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIR----NPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLM-GTNIRDFLEEANR 139 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCC----SCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCC-SSCHHHHHHHHHH
T ss_pred cCCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhcc-ccCHHHHHHHHHH
Confidence 3567899999999999987773 479999999877778999999999999999999996 664 5889999999999
Q ss_pred cccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEeCCcC
Q 025071 192 TLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKKKKK 255 (258)
Q Consensus 192 VLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K~~~~ 255 (258)
+|||||.+++..... ...+.+++.+++++.|+..+......+....++++|.++.
T Consensus 140 ~L~~gG~l~i~~~~~---------~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~~~ 194 (215)
T 2zfu_A 140 VLKPGGLLKVAEVSS---------RFEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKTGPP 194 (215)
T ss_dssp HEEEEEEEEEEECGG---------GCSCHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEECSSC
T ss_pred hCCCCeEEEEEEcCC---------CCCCHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEecCcc
Confidence 999999999975421 1237899999999999877665444445578999996654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.2e-18 Score=142.05 Aligned_cols=122 Identities=9% Similarity=0.073 Sum_probs=98.9
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEec-cccccC--Ch
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHAL--YP 182 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~--~p 182 (258)
+.+|||+|||+|..+..|++.|. +++|+|+++. ...++++|+.++|+++++||+|++. +++|+. ++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 120 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGEL 120 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTH
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHH
Confidence 67999999999999999998875 8999999752 3457889999999999999999995 889986 88
Q ss_pred HHHHHHHHhcccCCcEEEEEeccccCcCcC----CCCCCCChhHHHHHhhcCceEEeeee
Q 025071 183 WKFVGEIERTLKPAGVCVLHVALSRRADKY----SANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y----~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
..+++++.|+|||||++++.+........+ .....++.+++.+++++.|+..+...
T Consensus 121 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 180 (203)
T 3h2b_A 121 PDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSH 180 (203)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEE
Confidence 999999999999999999986543221111 12234789999999999997655433
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=147.31 Aligned_cols=120 Identities=14% Similarity=0.051 Sum_probs=89.3
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------------------CCceeeecCCCCCCC
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------------------PPLVIKGDFHAQPFD 164 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------------------~~~~~~aDa~~LPf~ 164 (258)
.+.++.+|||+|||+|..+..|++.|+ +|+|+|+|+. ...++++|+.++|++
T Consensus 19 ~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 19 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred ccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456788999999999999999998886 8999998731 234788999999998
Q ss_pred C-CCeeEEEec-cccccCCh--HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 165 N-GTFDFEFSN-VFDHALYP--WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 165 d-~SFD~V~s~-~l~h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
+ ++||+|++. +++|+..+ ..+++|++|+|||||++++.+..............++.+++.++|.+ |+.
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~ 169 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWE 169 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEE
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcE
Confidence 7 899999985 77777633 45889999999999985444322111100011122588999999997 653
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-18 Score=147.84 Aligned_cols=131 Identities=18% Similarity=0.118 Sum_probs=100.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCe
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTF 168 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SF 168 (258)
+.+++...+.++.+|||||||+|..+..+++....+|+|+|+++. ...++++|++++|+ +++|
T Consensus 26 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~f 104 (256)
T 1nkv_A 26 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKC 104 (256)
T ss_dssp HHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCE
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCC
Confidence 334444456788999999999999999888752248999998741 23578899999999 8999
Q ss_pred eEEEec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCcC----------cCCCCCCCChhHHHHHhhcCceEEee
Q 025071 169 DFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRAD----------KYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 169 D~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~----------~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
|+|++. +++|+.++..+++|+.|+|||||++++..+...... ......+++..++.++++++|+..+.
T Consensus 105 D~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 183 (256)
T 1nkv_A 105 DVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVE 183 (256)
T ss_dssp EEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCE
T ss_pred CEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEE
Confidence 999994 889999999999999999999999999754321110 11123567889999999999976544
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-18 Score=139.34 Aligned_cols=137 Identities=13% Similarity=0.133 Sum_probs=106.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEec-cccccCC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALY 181 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~ 181 (258)
+.++.+|||+|||+|..+..+++.+. +++|+|+++. ...+..+| +|+++++||+|+++ +++|+.+
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~~ 90 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMDD 90 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCSC
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcccC
Confidence 45778999999999999999998764 8999998742 23456666 89999999999995 8999999
Q ss_pred hHHHHHHHHhcccCCcEEEEEeccccCcC-cCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEeCCcC
Q 025071 182 PWKFVGEIERTLKPAGVCVLHVALSRRAD-KYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKKKKK 255 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG~lii~v~~~~~~~-~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K~~~~ 255 (258)
+..+++|+.|+|||||++++......... .......++.+++.++++ |+..+...+-....-.++|+|++..
T Consensus 91 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~~~~~~~ 163 (170)
T 3i9f_A 91 KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFGLVLKRKTSE 163 (170)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEEEEEEECCCC
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEEEEEecCCCC
Confidence 99999999999999999998754322111 112234578999999999 8877666654445567888886543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=154.91 Aligned_cols=88 Identities=16% Similarity=0.114 Sum_probs=76.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------CCceeeecCCCCCCCCCCeeEEEec-cccccCChH
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPW 183 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~ 183 (258)
..+.+|||||||+|..+..|++.|. +|+|+|+|+. ...++++|++++||++++||+|++. ++ |+.++.
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~~~~~ 115 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAM-HWFDLD 115 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCC-TTCCHH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeeh-hHhhHH
Confidence 4567999999999999999998874 8999998742 2357899999999999999999996 66 555799
Q ss_pred HHHHHHHhcccCCcEEEEEe
Q 025071 184 KFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 184 ~~l~Ei~RVLKPGG~lii~v 203 (258)
++++|++|||||||++++..
T Consensus 116 ~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 116 RFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEE
Confidence 99999999999999998864
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-18 Score=144.45 Aligned_cols=138 Identities=16% Similarity=0.153 Sum_probs=104.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------CCceeeecCCCCCCCCCCeeEEEec-cccccCC
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALY 181 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~ 181 (258)
.++.+|||+|||+|..+..+++.+. +++|+|+++. ...+.++|+.++|++ ++||+|++. +++|+.+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~ 121 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTD 121 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCH
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcCCh
Confidence 3678999999999999999988875 8999998752 346789999999999 999999995 8999998
Q ss_pred hHH--HHHHHHhcccCCcEEEEEeccccCcC------------cC-------CCCCCCChhHHHHHhhcCceEEeeeecC
Q 025071 182 PWK--FVGEIERTLKPAGVCVLHVALSRRAD------------KY-------SANDLFSVKPLVKLFRESELVAVRKVDG 240 (258)
Q Consensus 182 p~~--~l~Ei~RVLKPGG~lii~v~~~~~~~------------~y-------~~~~~~s~~~l~~lf~~~~~~~v~~v~g 240 (258)
+.. +++|+.|+|||||.+++..+...... .| ....+++.+++.++++++|+..+ .+..
T Consensus 122 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~-~~~~ 200 (220)
T 3hnr_A 122 DEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVT-FTRL 200 (220)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEE-EEEC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEE-Eeec
Confidence 877 99999999999999999864321100 11 11234588999999999998533 3333
Q ss_pred CCCeEEEEEEeCCc
Q 025071 241 FGLDTEVVFRKKKK 254 (258)
Q Consensus 241 ~~l~~~~~f~K~~~ 254 (258)
.+..=.+..+|..+
T Consensus 201 ~~~~w~~~~~~~~~ 214 (220)
T 3hnr_A 201 NHFVWVMEATKQLE 214 (220)
T ss_dssp SSSEEEEEEEECSC
T ss_pred cceEEEEeehhhhh
Confidence 34433555565443
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-18 Score=151.08 Aligned_cols=125 Identities=27% Similarity=0.376 Sum_probs=100.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
.+.++.+|||||||+|..+..+++. |. +|+|+|+++. ...++++|+.++||++++||+|++.
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 157 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 157 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEec
Confidence 5678889999999999999998875 64 8999999742 2357889999999999999999995
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEeccccCcC----------cCCCCCCCChhHHHHHhhcCceEEeee
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRAD----------KYSANDLFSVKPLVKLFRESELVAVRK 237 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~----------~y~~~~~~s~~~l~~lf~~~~~~~v~~ 237 (258)
+++|+.++..+++|+.|+|||||++++..+...... .+....+.+.+++.+++.++|+..+..
T Consensus 158 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 231 (297)
T 2o57_A 158 DAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT 231 (297)
T ss_dssp SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred chhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 899999999999999999999999999865322110 112234568899999999999876544
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=153.59 Aligned_cols=123 Identities=16% Similarity=0.142 Sum_probs=97.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEec-cccccC
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHAL 180 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~ 180 (258)
...++.+|||||||+|..+..+++.+ .+|+|+|+++. ...+.++|++++|+ +++||+|+++ +++|+.
T Consensus 54 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~ 131 (279)
T 3ccf_A 54 NPQPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHWVK 131 (279)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCGGGCS
T ss_pred CCCCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcchhhhCc
Confidence 35677899999999999999998865 48999999752 34578999999998 6899999995 899999
Q ss_pred ChHHHHHHHHhcccCCcEEEEEeccccCcC-------------c-----C-CCCCCCChhHHHHHhhcCceEEee
Q 025071 181 YPWKFVGEIERTLKPAGVCVLHVALSRRAD-------------K-----Y-SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~-------------~-----y-~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
++..+++|+.|+|||||++++.++...... . + ....+++.+++.++++++|+..+.
T Consensus 132 d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 206 (279)
T 3ccf_A 132 EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTY 206 (279)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEE
T ss_pred CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEE
Confidence 999999999999999999998765321100 0 0 112356889999999999876543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=144.57 Aligned_cols=125 Identities=22% Similarity=0.224 Sum_probs=100.1
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec-
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
..+.++.+|||||||+|..+..+++.+. +|+|+|+++. ...+.++|++++|+++++||+|++.
T Consensus 17 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 95 (239)
T 1xxl_A 17 AECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRY 95 (239)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEES
T ss_pred hCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECC
Confidence 3567889999999999999999988764 8999998742 2346889999999999999999996
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEeccccCcC-------------cCCCCCCCChhHHHHHhhcCceEEee
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRAD-------------KYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~-------------~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+++|+.++..+++|+.|+|||||++++......... .......++.+++.++++++|+..+.
T Consensus 96 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~ 170 (239)
T 1xxl_A 96 AAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQD 170 (239)
T ss_dssp CGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEE
Confidence 899999999999999999999999998744221110 01112446889999999999986544
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=142.75 Aligned_cols=124 Identities=22% Similarity=0.352 Sum_probs=99.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------CCceeeecCCCCCCCCCCeeEEEec-ccccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHA 179 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~ 179 (258)
+.++.+|||||||+|..+..+++.|. +|+|+|+++. ...++++|+.++|+++++||+|++. +++|+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 45788999999999999999998875 8999998642 2357889999999999999999995 89999
Q ss_pred CChHHHHHHHHhcccCCcEEEEEeccccCc---C----cC---CCCCCCChhHHHHHhhcCceEEeee
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLHVALSRRA---D----KY---SANDLFSVKPLVKLFRESELVAVRK 237 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~---~----~y---~~~~~~s~~~l~~lf~~~~~~~v~~ 237 (258)
.++..+++++.|+|||||++++........ . .+ .....++..++.+++.++|+..+..
T Consensus 130 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 130 EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 999999999999999999999986432110 0 11 1223468899999999999765543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=144.80 Aligned_cols=125 Identities=15% Similarity=0.208 Sum_probs=99.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------CCceeeecCCCCCCCCCCeeEEEec-cccccC
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHAL 180 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~ 180 (258)
.++.+|||||||+|..+..+++.|..+|+|+|+++. ...++++|+..+|+++++||+|++. +++|+.
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 122 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA 122 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhh
Confidence 367899999999999999999887668999998742 2357889999999999999999995 899999
Q ss_pred ChHHHHHHHHhcccCCcEEEEEecccc---C----------c-------CcCCC------------CC--CCChhHHHHH
Q 025071 181 YPWKFVGEIERTLKPAGVCVLHVALSR---R----------A-------DKYSA------------ND--LFSVKPLVKL 226 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~v~~~~---~----------~-------~~y~~------------~~--~~s~~~l~~l 226 (258)
++..+++++.|+|||||++++.++... . . ..|-. .. .++.+++.++
T Consensus 123 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 202 (253)
T 3g5l_A 123 SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQT 202 (253)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHHHH
Confidence 999999999999999999999754320 0 0 00000 00 1288999999
Q ss_pred hhcCceEEeeee
Q 025071 227 FRESELVAVRKV 238 (258)
Q Consensus 227 f~~~~~~~v~~v 238 (258)
++++|+..+...
T Consensus 203 l~~aGF~~~~~~ 214 (253)
T 3g5l_A 203 LLKNGFQINSVI 214 (253)
T ss_dssp HHHTTEEEEEEE
T ss_pred HHHcCCeeeeee
Confidence 999998765544
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-17 Score=143.12 Aligned_cols=142 Identities=13% Similarity=0.057 Sum_probs=105.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEec--cccccC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSN--VFDHAL 180 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~--~l~h~~ 180 (258)
+.++.+|||||||+|..+..|++.|. +|+|+|+++. ...++++|+.++|+ +++||+|++. +++|+.
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSC
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcC
Confidence 34678999999999999999988874 7999999752 34578999999999 7899999984 888886
Q ss_pred ---ChHHHHHHHHhcccCCcEEEEEeccccC-------------------------------------------cCcC--
Q 025071 181 ---YPWKFVGEIERTLKPAGVCVLHVALSRR-------------------------------------------ADKY-- 212 (258)
Q Consensus 181 ---~p~~~l~Ei~RVLKPGG~lii~v~~~~~-------------------------------------------~~~y-- 212 (258)
+...+++++.|+|||||++++....... ...+
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITH 205 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEE
Confidence 4557899999999999999985211000 0000
Q ss_pred ----CCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEeCCcCC
Q 025071 213 ----SANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKKKKKS 256 (258)
Q Consensus 213 ----~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K~~~~~ 256 (258)
.....|+.+++.++++++|+..+......+....++-+|+...+
T Consensus 206 ~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~a~~~ 253 (263)
T 3pfg_A 206 HEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPGAKGE 253 (263)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEECC---
T ss_pred EEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecCCCCc
Confidence 01235789999999999999766655444555678888865543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-17 Score=141.90 Aligned_cols=126 Identities=18% Similarity=0.208 Sum_probs=99.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
.+.++.+|||||||+|..+..+++.+..+|+|+|+++. ...++++|+.++|+++++||+|+++
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 35677899999999999999998875458999999742 1357889999999999999999995
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEeccccCcC-------cC--CCCCCCChhHHHHHhhcCceEEeeee
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRAD-------KY--SANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~-------~y--~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
+++|+ ++..+++++.|+|||||++++..+...... .+ ....+.+.+++.+++++.|+..+...
T Consensus 123 ~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 123 AIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHF 194 (257)
T ss_dssp CSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred hHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 78888 899999999999999999999864311110 00 11235688999999999998766643
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=144.70 Aligned_cols=125 Identities=17% Similarity=0.197 Sum_probs=99.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-c
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
+.++.+|||||||+|..+..+++.+..+|+|+|+++. ...++++|+.++|+++++||+|++. +
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA 123 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence 5678899999999999999999876568999999742 1457899999999999999999995 7
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEeccccCcCc-------C--CCCCCCChhHHHHHhhcCceEEeeee
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADK-------Y--SANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~-------y--~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
++|+ ++..+++++.|+|||||++++.......... + ....+++..++.++++++|+..+...
T Consensus 124 ~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (267)
T 3kkz_A 124 IYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATF 194 (267)
T ss_dssp GGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEE
T ss_pred ceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 8888 8999999999999999999997543111100 0 11245688999999999998766543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-17 Score=138.37 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=92.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEec-cccccCCh
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYP 182 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p 182 (258)
.++.+|||+|||+|..+..+ +..+++|+|+++. ...++++|+.++|+++++||+|++. +++|+.++
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 111 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDV 111 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCH
T ss_pred CCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCH
Confidence 47889999999999998877 5448999998742 3457889999999999999999995 89999999
Q ss_pred HHHHHHHHhcccCCcEEEEEeccccC------------c-CcCCCCCCCChhHHHHHhh
Q 025071 183 WKFVGEIERTLKPAGVCVLHVALSRR------------A-DKYSANDLFSVKPLVKLFR 228 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v~~~~~------------~-~~y~~~~~~s~~~l~~lf~ 228 (258)
..+++|+.|+|||||.+++.++.... + ..+...++++.+++.++++
T Consensus 112 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~ 170 (211)
T 2gs9_A 112 ERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLG 170 (211)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhccCccccccccCCHHHHHHHhc
Confidence 99999999999999999998654311 0 0123355689999999999
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-18 Score=142.65 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=102.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
...++ +|||+|||+|..+..+++.+..+++|+|+++. ...+.++|+.++|+++++||+|+++
T Consensus 41 ~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 119 (219)
T 3dlc_A 41 GITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRG 119 (219)
T ss_dssp CCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEES
T ss_pred CCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECc
Confidence 34444 99999999999999998763348999998641 2357889999999999999999995
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEeccccCc-------------CcC-----CCCCCCChhHHHHHhhcCceEEee
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA-------------DKY-----SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-------------~~y-----~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+++|+.++..+++++.|+|||||.+++........ ..+ .....++.+++.++++++|+..+.
T Consensus 120 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 199 (219)
T 3dlc_A 120 SVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYE 199 (219)
T ss_dssp CGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEE
T ss_pred hHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEE
Confidence 89999999999999999999999999874322100 000 112234678999999999986555
Q ss_pred eecCCCCeEEEEEEeCC
Q 025071 237 KVDGFGLDTEVVFRKKK 253 (258)
Q Consensus 237 ~v~g~~l~~~~~f~K~~ 253 (258)
......- .-++++|+.
T Consensus 200 ~~~~~~~-~~~~~~k~~ 215 (219)
T 3dlc_A 200 IILGDEG-FWIIISKTD 215 (219)
T ss_dssp EEEETTE-EEEEEBCCS
T ss_pred EEecCCc-eEEEEeccc
Confidence 4422121 245666643
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=146.45 Aligned_cols=141 Identities=19% Similarity=0.221 Sum_probs=100.4
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcC---CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEE
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVG---VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEF 172 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g---~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~ 172 (258)
.++++.+|||||||+|..+..|++.. ..+|+|+|+|+. ...++++|+.++|++ +||+|+
T Consensus 67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~ 144 (261)
T 4gek_A 67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVV 144 (261)
T ss_dssp HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEE
T ss_pred hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccce
Confidence 46789999999999999999887641 237999999742 234788999999985 599999
Q ss_pred ec-cccccCCh--HHHHHHHHhcccCCcEEEEEeccccCc-----------------CcCCCC-------------CCCC
Q 025071 173 SN-VFDHALYP--WKFVGEIERTLKPAGVCVLHVALSRRA-----------------DKYSAN-------------DLFS 219 (258)
Q Consensus 173 s~-~l~h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~~-----------------~~y~~~-------------~~~s 219 (258)
++ +++|+..+ ..+++||+|+|||||++++........ ..|+.. ..++
T Consensus 145 ~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s 224 (261)
T 4gek_A 145 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 224 (261)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBC
T ss_pred eeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCC
Confidence 96 78887644 357999999999999999864321100 012111 1257
Q ss_pred hhHHHHHhhcCceEEeeee-cCCCCeEEEEEEeCCcC
Q 025071 220 VKPLVKLFRESELVAVRKV-DGFGLDTEVVFRKKKKK 255 (258)
Q Consensus 220 ~~~l~~lf~~~~~~~v~~v-~g~~l~~~~~f~K~~~~ 255 (258)
.+++.++++++|+.++..+ ..+.. ..++-+|..+.
T Consensus 225 ~~~~~~~L~~AGF~~ve~~fq~~nF-~~~iA~K~~~~ 260 (261)
T 4gek_A 225 VETHKARLHKAGFEHSELWFQCFNF-GSLVALKAEDA 260 (261)
T ss_dssp HHHHHHHHHHHTCSEEEEEEEETTE-EEEEEECCTTC
T ss_pred HHHHHHHHHHcCCCeEEEEEEeccE-EEEEEEEcCCC
Confidence 7889999999998776643 23333 45667776554
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-17 Score=147.58 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=98.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
+.++.+|||||||+|..+..+++. |. +|+|+|+++. ...++++|+.++|+++++||+|++.
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 193 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE 193 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC
Confidence 567889999999999999999876 64 7999998742 2357899999999999999999995
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEeccccCcC-----------cCCCCCCCChhHHHHHhhcCceEEeee
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRAD-----------KYSANDLFSVKPLVKLFRESELVAVRK 237 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~-----------~y~~~~~~s~~~l~~lf~~~~~~~v~~ 237 (258)
+++|+ ++..+++|+.|+|||||++++......... .+....+++.+++.++++++|+..+..
T Consensus 194 ~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~ 266 (312)
T 3vc1_A 194 STMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTI 266 (312)
T ss_dssp CGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEE
T ss_pred chhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEE
Confidence 78888 699999999999999999998764322110 011224578999999999999865543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=144.17 Aligned_cols=123 Identities=16% Similarity=0.178 Sum_probs=97.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------CCceeeecCCCC--CCCCCCeeEEEec-cccccCCh
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------PPLVIKGDFHAQ--PFDNGTFDFEFSN-VFDHALYP 182 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------~~~~~~aDa~~L--Pf~d~SFD~V~s~-~l~h~~~p 182 (258)
+.++.+|||||||+|..+..+++.|. +|+|+|+++. ...++.+|+.++ |+++++||+|++. +++|+.++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~ 117 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPE 117 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGG
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEECCchhhCCcH
Confidence 45778999999999999999988875 7999999753 245677888775 8999999999995 89999966
Q ss_pred --HHHHHHHHhcccCCcEEEEEeccccCc----CcC---CCCCCCChhHHHHHhhcCceEEee
Q 025071 183 --WKFVGEIERTLKPAGVCVLHVALSRRA----DKY---SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 183 --~~~l~Ei~RVLKPGG~lii~v~~~~~~----~~y---~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
..+++++.|+|||||++++.++..... ..| .....++.+++.++++++|+..+.
T Consensus 118 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~ 180 (240)
T 3dli_A 118 RLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVK 180 (240)
T ss_dssp GHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEE
Confidence 899999999999999999987643211 011 223457889999999999876544
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.9e-17 Score=137.81 Aligned_cols=137 Identities=16% Similarity=0.127 Sum_probs=98.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCC-CcEEEEeCCCC--------------------CCceeeecCCCCCCCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLVGV-SDSIGIDLVPR--------------------PPLVIKGDFHAQPFDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~--------------------~~~~~~aDa~~LPf~d~SFD~V~ 172 (258)
.++.+|||||||+|..+..+++.+. .+++|+|+++. ...+.++|+..+++++++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 3578999999999999999988653 58999998741 23578889999999999999999
Q ss_pred ec-cccccCCh--HHHHHHHHhcccCCcEEEEEeccccCcCcC-----------CCCCCCChhHHH----HHhhcCceE-
Q 025071 173 SN-VFDHALYP--WKFVGEIERTLKPAGVCVLHVALSRRADKY-----------SANDLFSVKPLV----KLFRESELV- 233 (258)
Q Consensus 173 s~-~l~h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y-----------~~~~~~s~~~l~----~lf~~~~~~- 233 (258)
+. +++|+.++ ..+++++.|+|||||.++.. +.......+ .....++.+++. +++++.|+.
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v 186 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST-PNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSV 186 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE-EBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEE
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc-cchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEE
Confidence 95 89999877 58899999999999965554 322211111 111225888888 667777763
Q ss_pred Eeeee----cCCCCe-EEEEEEe
Q 025071 234 AVRKV----DGFGLD-TEVVFRK 251 (258)
Q Consensus 234 ~v~~v----~g~~l~-~~~~f~K 251 (258)
.+..+ ...+.. +..+|+|
T Consensus 187 ~~~~~g~~~~~~g~~~qi~~~~~ 209 (219)
T 3jwg_A 187 RFLQIGEIDDEFGSPTQMGVFTL 209 (219)
T ss_dssp EEEEESCCCTTSCCSEEEEEEEE
T ss_pred EEEecCCccccCCCCeEEEEEec
Confidence 22222 122222 6999998
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=143.87 Aligned_cols=122 Identities=20% Similarity=0.083 Sum_probs=94.6
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------CCceeeecCCCCCCCCCCeeEEEec-cccccCC
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALY 181 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~ 181 (258)
...++.+|||||||+|..+..+++.+ .+|+|+|+++. ...++++|++++|+++++||+|++. +++|+.+
T Consensus 31 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 109 (261)
T 3ege_A 31 NLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSH 109 (261)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSS
T ss_pred CCCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhccC
Confidence 35678899999999999999999866 48999999742 2357889999999999999999995 7999999
Q ss_pred hHHHHHHHHhcccCCcEEEEEeccccCcC-cC-----------CCCCCCChhHHHHHhhcCceEEee
Q 025071 182 PWKFVGEIERTLKPAGVCVLHVALSRRAD-KY-----------SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG~lii~v~~~~~~~-~y-----------~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+..+++|++|+|| ||++++......... .+ ....+++.+++. +++++|+..+.
T Consensus 110 ~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~ 174 (261)
T 3ege_A 110 LEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVE 174 (261)
T ss_dssp HHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEE
T ss_pred HHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCcee
Confidence 9999999999999 997777644321111 11 012344667788 99988875443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.3e-17 Score=137.97 Aligned_cols=125 Identities=14% Similarity=0.154 Sum_probs=96.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCeeEEEec-ccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~ 177 (258)
..++.+|||||||+|..+..+++.. ..+++|+|+++. ...++++|+.++|++ ++||+|++. +++
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIH 120 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGG
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCccc
Confidence 4567899999999999999998763 358999998742 235788999999998 899999995 889
Q ss_pred ccCChH--HHHHHHHhcccCCcEEEEEeccccCc-----------------------------CcCCCCCCCChhHHHHH
Q 025071 178 HALYPW--KFVGEIERTLKPAGVCVLHVALSRRA-----------------------------DKYSANDLFSVKPLVKL 226 (258)
Q Consensus 178 h~~~p~--~~l~Ei~RVLKPGG~lii~v~~~~~~-----------------------------~~y~~~~~~s~~~l~~l 226 (258)
|+.++. .+++|+.|+|||||++++........ ........++.+++.++
T Consensus 121 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (234)
T 3dtn_A 121 HLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNW 200 (234)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHH
Confidence 987766 48999999999999999875322110 00122334688999999
Q ss_pred hhcCceEEeeee
Q 025071 227 FRESELVAVRKV 238 (258)
Q Consensus 227 f~~~~~~~v~~v 238 (258)
++++|+..+...
T Consensus 201 l~~aGF~~v~~~ 212 (234)
T 3dtn_A 201 LKEAGFRDVSCI 212 (234)
T ss_dssp HHHTTCEEEEEE
T ss_pred HHHcCCCceeee
Confidence 999999877655
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=143.21 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=99.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEe
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFS 173 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s 173 (258)
..+++.....++.+|||||||+|..+..+++. +..+++|+|+++. ...+.++|++++| ++++||+|++
T Consensus 23 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 101 (259)
T 2p35_A 23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYA 101 (259)
T ss_dssp HHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEE
T ss_pred HHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEE
Confidence 34444434567789999999999999988875 2348999999742 3457899999999 8899999999
Q ss_pred c-cccccCChHHHHHHHHhcccCCcEEEEEeccccCc------------CcC---------CCCCCCChhHHHHHhhcCc
Q 025071 174 N-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA------------DKY---------SANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 174 ~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~------------~~y---------~~~~~~s~~~l~~lf~~~~ 231 (258)
+ +++|+.++..+++++.|+|||||++++.++..... ..+ ....+++.+++.++++++|
T Consensus 102 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 181 (259)
T 2p35_A 102 NAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKS 181 (259)
T ss_dssp ESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGGGE
T ss_pred eCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHhcC
Confidence 5 89999999999999999999999999986532110 001 1234578999999999999
Q ss_pred eE
Q 025071 232 LV 233 (258)
Q Consensus 232 ~~ 233 (258)
+.
T Consensus 182 f~ 183 (259)
T 2p35_A 182 SR 183 (259)
T ss_dssp EE
T ss_pred Cc
Confidence 83
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=143.41 Aligned_cols=133 Identities=17% Similarity=0.103 Sum_probs=99.7
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCeeEEE
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFDFEF 172 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD~V~ 172 (258)
.+++.....++.+|||||||+|..+..+++.+...|+|+|+++. ...+.++|+..+|+++++||+|+
T Consensus 84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 163 (254)
T 1xtp_A 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIV 163 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEE
T ss_pred HHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEE
Confidence 34443334567899999999999999888776557999998642 13467889999999999999999
Q ss_pred ec-cccccC--ChHHHHHHHHhcccCCcEEEEEeccccCcCc----CCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 173 SN-VFDHAL--YPWKFVGEIERTLKPAGVCVLHVALSRRADK----YSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 173 s~-~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~----y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
+. +++|+. ++..+++++.|+|||||++++..+....... ......++.+++.++++++|+..+...
T Consensus 164 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 236 (254)
T 1xtp_A 164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEee
Confidence 95 888984 4788999999999999999998653211110 111223688999999999987655443
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=139.79 Aligned_cols=123 Identities=21% Similarity=0.169 Sum_probs=97.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------CCceeeecCCCCCCCCCCeeEEEec-cccccC-
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHAL- 180 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~- 180 (258)
.+.++.+|||+|||+|..+..+++.|. +|+|+|+++. ...+.++|+..+| .+++||+|++. +++|+.
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEECSCGGGSCH
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEEecCchhhcCH
Confidence 356788999999999999999998875 8999999753 3357889999999 89999999995 889988
Q ss_pred -ChHHHHHHHHhcccCCcEEEEEeccccCcC--cC-CCCCCCChhHHHHHhhcCc-eEEee
Q 025071 181 -YPWKFVGEIERTLKPAGVCVLHVALSRRAD--KY-SANDLFSVKPLVKLFRESE-LVAVR 236 (258)
Q Consensus 181 -~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~--~y-~~~~~~s~~~l~~lf~~~~-~~~v~ 236 (258)
++..+++++.|+|||||++++.++...... .. .....++.+++.++++++| +..+.
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~ 178 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVA 178 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEE
Confidence 777899999999999999999865432110 11 1234579999999999888 65433
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=133.11 Aligned_cols=119 Identities=12% Similarity=0.060 Sum_probs=94.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------CCceeeecCCCCCCCCCCeeEEEec-cccccC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHAL 180 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~ 180 (258)
+.++.+|||||||+|..+..+++.|. +++|+|+++. ...++++|+.++ +++++||+|+++ +++|+.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCC
Confidence 56778999999999999999988775 8999998742 235788999988 889999999995 889998
Q ss_pred Ch--HHHHHHHHhcccCCcEEEEEeccccCc----------C-----------cC-CCCCCCChhHHHHHhhcCceE
Q 025071 181 YP--WKFVGEIERTLKPAGVCVLHVALSRRA----------D-----------KY-SANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 181 ~p--~~~l~Ei~RVLKPGG~lii~v~~~~~~----------~-----------~y-~~~~~~s~~~l~~lf~~~~~~ 233 (258)
++ ..+++++.|+|||||.+++........ . .| ....+++.+++.++++++|+.
T Consensus 122 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 198 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWS 198 (218)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCE
Confidence 86 788999999999999999875432110 0 00 012356889999999999986
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=132.19 Aligned_cols=122 Identities=19% Similarity=0.195 Sum_probs=94.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec-cc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN-VF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l 176 (258)
..++.+|||+|||+|..+..+++.|. +++|+|+++. ...+..+|+.++|+ +++||+|++. ++
T Consensus 30 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l 107 (199)
T 2xvm_A 30 VVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVL 107 (199)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCG
T ss_pred ccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchh
Confidence 34677999999999999999988875 8999998742 23467889999999 8999999995 78
Q ss_pred cccC--ChHHHHHHHHhcccCCcEEEEEeccccCcCcC--CCCCCCChhHHHHHhhcCceEEee
Q 025071 177 DHAL--YPWKFVGEIERTLKPAGVCVLHVALSRRADKY--SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 177 ~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y--~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+|+. ++..+++++.|+|||||.+++........... .....++.+++.++|.+.+++...
T Consensus 108 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~ 171 (199)
T 2xvm_A 108 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKYN 171 (199)
T ss_dssp GGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTTSEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcCCeEEEec
Confidence 8877 77889999999999999987764432221111 122346889999999986655543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-17 Score=143.74 Aligned_cols=126 Identities=20% Similarity=0.356 Sum_probs=98.5
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
..+.++.+|||||||+|..+..+++.+ ..+|+|+|+++. ...+.++|+.++|+++++||+|+++
T Consensus 33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 112 (276)
T 3mgg_A 33 TVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVC 112 (276)
T ss_dssp CCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEE
T ss_pred ccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEe
Confidence 345678999999999999999998763 358999998741 2346889999999999999999995
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEeccccCc------C-------------cCCCCCCCChhHHHHHhhcCceEE
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA------D-------------KYSANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~------~-------------~y~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
+++|+.++..+++++.|+|||||++++..+..... . .+.....++.+++.++++++|+..
T Consensus 113 ~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 192 (276)
T 3mgg_A 113 FVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK 192 (276)
T ss_dssp SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEE
T ss_pred chhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCe
Confidence 89999999999999999999999999975422100 0 011223356788999999999865
Q ss_pred ee
Q 025071 235 VR 236 (258)
Q Consensus 235 v~ 236 (258)
+.
T Consensus 193 v~ 194 (276)
T 3mgg_A 193 IR 194 (276)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=138.42 Aligned_cols=123 Identities=21% Similarity=0.272 Sum_probs=97.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------------CCceeeecCCCCCCCCCCeeEEE
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------------PPLVIKGDFHAQPFDNGTFDFEF 172 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------------~~~~~~aDa~~LPf~d~SFD~V~ 172 (258)
+.++.+|||+|||+|..+..+++.|. +|+|+|+++. ...+.++|+..+|+++++||+|+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 45788999999999999999988875 8999998641 12467899999999999999999
Q ss_pred ec-cccccCChH---HHHHHHHhcccCCcEEEEEeccccCc------------------CcC-----------CCCCCCC
Q 025071 173 SN-VFDHALYPW---KFVGEIERTLKPAGVCVLHVALSRRA------------------DKY-----------SANDLFS 219 (258)
Q Consensus 173 s~-~l~h~~~p~---~~l~Ei~RVLKPGG~lii~v~~~~~~------------------~~y-----------~~~~~~s 219 (258)
+. +++|+.++. .+++++.|+|||||++++........ ..+ .....++
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFT 186 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCC
Confidence 95 899999988 89999999999999999875422100 000 0123578
Q ss_pred hhHHHHHhhcCceEEee
Q 025071 220 VKPLVKLFRESELVAVR 236 (258)
Q Consensus 220 ~~~l~~lf~~~~~~~v~ 236 (258)
.+++.++++++|+..+.
T Consensus 187 ~~~l~~ll~~aGf~~~~ 203 (235)
T 3sm3_A 187 EKELVFLLTDCRFEIDY 203 (235)
T ss_dssp HHHHHHHHHTTTEEEEE
T ss_pred HHHHHHHHHHcCCEEEE
Confidence 99999999999976444
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-17 Score=152.19 Aligned_cols=134 Identities=15% Similarity=0.191 Sum_probs=102.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------C-----ceeeecCCCCCCCCCCe
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------P-----LVIKGDFHAQPFDNGTF 168 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------~-----~~~~aDa~~LPf~d~SF 168 (258)
.+.+.+++...+.++.+|||||||+|..+..|++.|. +|+|+|+++.. . .+..++++.+|+++++|
T Consensus 94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~f 172 (416)
T 4e2x_A 94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPA 172 (416)
T ss_dssp HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCE
Confidence 3444555544456788999999999999999998876 89999997421 1 13345677788999999
Q ss_pred eEEEec-cccccCChHHHHHHHHhcccCCcEEEEEecccc------C-cCcC-CCCCCCChhHHHHHhhcCceEEee
Q 025071 169 DFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSR------R-ADKY-SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 169 D~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~------~-~~~y-~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
|+|++. +++|+.++..+++|++|+|||||++++.++... . ...+ .....++.+++.+++++.|+..+.
T Consensus 173 D~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~ 249 (416)
T 4e2x_A 173 NVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVD 249 (416)
T ss_dssp EEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEE
T ss_pred EEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEE
Confidence 999995 899999999999999999999999999876421 0 1111 222347999999999999975443
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.70 E-value=7e-17 Score=145.14 Aligned_cols=139 Identities=20% Similarity=0.110 Sum_probs=104.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHH--hcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 113 LFNESKALSIGARVGQEVAALK--LVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~--~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
+.++.+|||||||+|..+..++ ..+..+|+|+|+++. ...++++|+.++|++ ++||+|+++
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~ 194 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSN 194 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEEC
Confidence 5678999999999999998884 333458999998742 134788999999998 999999995
Q ss_pred -cccccCChHH---HHHHHHhcccCCcEEEEEeccccCc----C-----cC------------------CCCCCCChhHH
Q 025071 175 -VFDHALYPWK---FVGEIERTLKPAGVCVLHVALSRRA----D-----KY------------------SANDLFSVKPL 223 (258)
Q Consensus 175 -~l~h~~~p~~---~l~Ei~RVLKPGG~lii~v~~~~~~----~-----~y------------------~~~~~~s~~~l 223 (258)
+++|+.++.. +++++.|+|||||++++........ . .+ ....+++.+++
T Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 7899988886 6899999999999999975322110 0 00 01144789999
Q ss_pred HHHhhcCceEEeeeec-CCCCeEEEEEEeC
Q 025071 224 VKLFRESELVAVRKVD-GFGLDTEVVFRKK 252 (258)
Q Consensus 224 ~~lf~~~~~~~v~~v~-g~~l~~~~~f~K~ 252 (258)
.++++++|+..+...+ ..+....++.+|+
T Consensus 275 ~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred HHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 9999999987766553 4444457777764
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.3e-17 Score=137.67 Aligned_cols=124 Identities=15% Similarity=0.217 Sum_probs=97.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------CCceeeecCCCCCCCCCCeeEEEec-cccccC
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHAL 180 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~ 180 (258)
.++.+|||||||+|..+..+++.|..+++|+|+++. ...+.++|+.++|+++++||+|++. +++|+.
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 121 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVE 121 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccccc
Confidence 467899999999999999998887558999998742 1346889999999999999999995 889999
Q ss_pred ChHHHHHHHHhcccCCcEEEEEecccc----Cc---------------CcCC------------C--CCCCChhHHHHHh
Q 025071 181 YPWKFVGEIERTLKPAGVCVLHVALSR----RA---------------DKYS------------A--NDLFSVKPLVKLF 227 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~v~~~~----~~---------------~~y~------------~--~~~~s~~~l~~lf 227 (258)
++..+++++.|+|||||++++.++... .. ..|. . ...++.+++.+++
T Consensus 122 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l 201 (243)
T 3bkw_A 122 DVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNAL 201 (243)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHHHHHH
T ss_pred hHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHHHHHH
Confidence 999999999999999999999764210 00 0010 0 0114789999999
Q ss_pred hcCceEEeee
Q 025071 228 RESELVAVRK 237 (258)
Q Consensus 228 ~~~~~~~v~~ 237 (258)
+++|+..+..
T Consensus 202 ~~aGF~~~~~ 211 (243)
T 3bkw_A 202 IRSGFAIEHV 211 (243)
T ss_dssp HHTTCEEEEE
T ss_pred HHcCCEeeee
Confidence 9999865543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=140.81 Aligned_cols=123 Identities=13% Similarity=0.075 Sum_probs=90.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------------------------CCceeeecCCCC
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------------------------PPLVIKGDFHAQ 161 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------------------------~~~~~~aDa~~L 161 (258)
.++.+|||+|||+|..+..|++.|+ +|+|||+|+. ...++++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 4678999999999999999999987 8999998631 124688999999
Q ss_pred CCCC-CCeeEEEec-cccccCC--hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCC-CCCChhHHHHHhhcC-ceEEe
Q 025071 162 PFDN-GTFDFEFSN-VFDHALY--PWKFVGEIERTLKPAGVCVLHVALSRRADKYSAN-DLFSVKPLVKLFRES-ELVAV 235 (258)
Q Consensus 162 Pf~d-~SFD~V~s~-~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~-~~~s~~~l~~lf~~~-~~~~v 235 (258)
|+++ ++||+|++. +++|+.. ...+++|+.|+|||||++++........ ..... ..++.+++.++|.+. .++.+
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~-~~~g~~~~~~~~el~~~l~~~f~v~~~ 224 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPT-KHAGPPFYVPSAELKRLFGTKCSMQCL 224 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTT-SCCCSSCCCCHHHHHHHHTTTEEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCc-cCCCCCCCCCHHHHHHHhhCCeEEEEE
Confidence 9986 899999985 7777763 3568999999999999986543221111 11111 126889999999863 33333
Q ss_pred eee
Q 025071 236 RKV 238 (258)
Q Consensus 236 ~~v 238 (258)
..+
T Consensus 225 ~~~ 227 (252)
T 2gb4_A 225 EEV 227 (252)
T ss_dssp EEE
T ss_pred ecc
Confidence 333
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=136.55 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=96.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEe-c-ccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFS-N-VFD 177 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s-~-~l~ 177 (258)
.++.+|||+|||+|..+..+++.|. +++|+|+++. ...+.++|+.++|++ ++||+|++ . +++
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGG
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCcccc
Confidence 3678999999999999999988874 7999998742 345788999999988 89999999 4 789
Q ss_pred cc---CChHHHHHHHHhcccCCcEEEEEeccccCc----------------------------------------CcC--
Q 025071 178 HA---LYPWKFVGEIERTLKPAGVCVLHVALSRRA----------------------------------------DKY-- 212 (258)
Q Consensus 178 h~---~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~----------------------------------------~~y-- 212 (258)
|+ .++..+++++.|+|||||++++.++..... ..|
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKR 193 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcccc
Confidence 98 466789999999999999999865432100 000
Q ss_pred ----CCCCCCChhHHHHHhhcCceEEeeee
Q 025071 213 ----SANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 213 ----~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
...+.|+.+++.++++++|+..+...
T Consensus 194 ~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~ 223 (246)
T 1y8c_A 194 FDEEHEERAYKEEDIEKYLKHGQLNILDKV 223 (246)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEEE
T ss_pred cEEEEEEEcCCHHHHHHHHHHCCCeEEEEE
Confidence 01245799999999999998766654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-16 Score=131.96 Aligned_cols=122 Identities=22% Similarity=0.441 Sum_probs=97.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------CCceeeecCCC--CCCCCCCeeEEEec-cccccCCh
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------PPLVIKGDFHA--QPFDNGTFDFEFSN-VFDHALYP 182 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------~~~~~~aDa~~--LPf~d~SFD~V~s~-~l~h~~~p 182 (258)
.++.+|||+|||+|..+..+++.| .+++|+|+++. ...+..+|+.. +|+++++||+|++. +++|+.++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~ 109 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP 109 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCH
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCCH
Confidence 467899999999999999998877 58999998742 23467888876 78999999999995 89999999
Q ss_pred HHHHHHHHhcccCCcEEEEEeccccCc--------Cc--C--------CCCCCCChhHHHHHhhcCceEEee
Q 025071 183 WKFVGEIERTLKPAGVCVLHVALSRRA--------DK--Y--------SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v~~~~~~--------~~--y--------~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
..+++++.|+|||||.+++.++..... .. + .....++.+++.++++++|+..+.
T Consensus 110 ~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 181 (230)
T 3cc8_A 110 WAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISK 181 (230)
T ss_dssp HHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEE
Confidence 999999999999999999987642110 01 1 112447899999999999976544
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-17 Score=143.10 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=78.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCC-CCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPF-DNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf-~d~SFD~V~s~ 174 (258)
.+.++.+|||||||+|..+..+++.|..+++|+|+++. ...++++|+.++|+ ++++||+|++.
T Consensus 61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 61 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred hCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 35678899999999999998888877668999998742 12567899999999 68999999995
Q ss_pred -cccc----cCChHHHHHHHHhcccCCcEEEEEecc
Q 025071 175 -VFDH----ALYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 175 -~l~h----~~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
+++| ..++..+++++.|+|||||++++.++.
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 6655 456788999999999999999998754
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=138.94 Aligned_cols=131 Identities=17% Similarity=0.139 Sum_probs=99.2
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHH-hcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCC
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALK-LVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDN 165 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~-~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d 165 (258)
.++.+++...+.++.+|||||||+|..+..++ ..|. +|+|+|+++. ...+..+|+.++|
T Consensus 52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--- 127 (287)
T 1kpg_A 52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--- 127 (287)
T ss_dssp HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---
Confidence 34444444446678899999999999999888 4565 8999998742 2346788888777
Q ss_pred CCeeEEEec-ccccc--CChHHHHHHHHhcccCCcEEEEEeccccCcC-----------------------cCCCCCCCC
Q 025071 166 GTFDFEFSN-VFDHA--LYPWKFVGEIERTLKPAGVCVLHVALSRRAD-----------------------KYSANDLFS 219 (258)
Q Consensus 166 ~SFD~V~s~-~l~h~--~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~-----------------------~y~~~~~~s 219 (258)
++||+|++. +++|+ .++..+++|+.|+|||||++++......... .++...+++
T Consensus 128 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 207 (287)
T 1kpg_A 128 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS 207 (287)
T ss_dssp CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCC
Confidence 899999995 89999 6789999999999999999999764321100 112345568
Q ss_pred hhHHHHHhhcCceEEeee
Q 025071 220 VKPLVKLFRESELVAVRK 237 (258)
Q Consensus 220 ~~~l~~lf~~~~~~~v~~ 237 (258)
.+++.++++++|+..+..
T Consensus 208 ~~~~~~~l~~aGf~~~~~ 225 (287)
T 1kpg_A 208 IPMVQECASANGFTVTRV 225 (287)
T ss_dssp HHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHhCCcEEEEE
Confidence 999999999999765544
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=137.93 Aligned_cols=124 Identities=15% Similarity=0.186 Sum_probs=95.9
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec-cccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDH 178 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h 178 (258)
++.+|||||||+|..+..|++.+..+|+|+|+++. ...++++|+..+++++++||+|++. +++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 57899999999999999988776568999998742 1236789999999999999999995 8899
Q ss_pred cCChH--HHHHHHHhcccCCcEEEEEeccccCcCcC---CCCCCCChhHHHHHhhcCceEEeeee
Q 025071 179 ALYPW--KFVGEIERTLKPAGVCVLHVALSRRADKY---SANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 179 ~~~p~--~~l~Ei~RVLKPGG~lii~v~~~~~~~~y---~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
+.++. .+++++.|+|||||++++..+.......+ .....++.+++.++++++|+..+...
T Consensus 159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 159 LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence 88765 78999999999999999975432211111 11112478999999999987655443
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=137.80 Aligned_cols=121 Identities=18% Similarity=0.139 Sum_probs=94.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec-cc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN-VF 176 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l 176 (258)
.+.++.+|||||||+|..+..+++.+ .+|+|+|+++. ...+.++|++++|+++++||+|++. ++
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 45678899999999999999998876 48999998641 2347889999999999999999995 88
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEeccccCcC---------------cCC---CCCCCChhHHHHHhhcCceE
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVALSRRAD---------------KYS---ANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~---------------~y~---~~~~~s~~~l~~lf~~~~~~ 233 (258)
+|+.++..+++|+.|+|||||++++.++...... .+. ....++.+++.+++.++|+.
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCTTHHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCCHHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999988744321000 011 11234677888999988865
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-16 Score=132.84 Aligned_cols=136 Identities=18% Similarity=0.156 Sum_probs=101.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEe-c-cccccCC
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFS-N-VFDHALY 181 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s-~-~l~h~~~ 181 (258)
.++.+|||+|||+|..+..+++.+. +++|+|+++. ...+.++|+.++|+ +++||+|+| . +++|+.+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCC
Confidence 5678999999999999999988764 8999999752 24578899999998 789999995 3 7888854
Q ss_pred ---hHHHHHHHHhcccCCcEEEEEeccccCc--C--------------------------------cC---C--------
Q 025071 182 ---PWKFVGEIERTLKPAGVCVLHVALSRRA--D--------------------------------KY---S-------- 213 (258)
Q Consensus 182 ---p~~~l~Ei~RVLKPGG~lii~v~~~~~~--~--------------------------------~y---~-------- 213 (258)
+..+++++.|+|||||.+++........ . .| .
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 4578999999999999999864321100 0 00 0
Q ss_pred ----CCCCCChhHHHHHhhcCceEEeeeec-CCCCeEEEEEEeC
Q 025071 214 ----ANDLFSVKPLVKLFRESELVAVRKVD-GFGLDTEVVFRKK 252 (258)
Q Consensus 214 ----~~~~~s~~~l~~lf~~~~~~~v~~v~-g~~l~~~~~f~K~ 252 (258)
...+|+.+++.++++++|+ .+..+. ..+-...++.+|+
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF-~v~~~~~~~~~~~~~va~K~ 239 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGL-RVEYLEGGPSGRGLFVGVPA 239 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTE-EEEEESSTTTSSCEEEEEEC
T ss_pred EEEEEeeecCHHHHHHHHHHCCC-EEEEeEcCCCCceEEEEecC
Confidence 0134789999999999999 555553 3344456777663
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.3e-16 Score=138.80 Aligned_cols=130 Identities=15% Similarity=0.069 Sum_probs=98.9
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCCCCCC
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDN 165 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d 165 (258)
.++.+++...+.++.+|||||||+|..+..+++. | .+|+|+|+++. ...+..+|+.++ +
T Consensus 60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~ 135 (302)
T 3hem_A 60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---D 135 (302)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---C
T ss_pred HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---C
Confidence 3444555445678889999999999999999876 7 58999999742 134678888776 7
Q ss_pred CCeeEEEec-cccccCCh---------HHHHHHHHhcccCCcEEEEEeccccCcC-----------------------cC
Q 025071 166 GTFDFEFSN-VFDHALYP---------WKFVGEIERTLKPAGVCVLHVALSRRAD-----------------------KY 212 (258)
Q Consensus 166 ~SFD~V~s~-~l~h~~~p---------~~~l~Ei~RVLKPGG~lii~v~~~~~~~-----------------------~y 212 (258)
++||+|++. +++|+.+| ..+++++.|+|||||++++......... .+
T Consensus 136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T 3hem_A 136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215 (302)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence 999999995 89999877 6899999999999999999754322100 11
Q ss_pred CCCCCCChhHHHHHhhcCceEEee
Q 025071 213 SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 213 ~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+...+.+.+++.+++++.|+..+.
T Consensus 216 p~~~~~s~~~~~~~l~~aGf~~~~ 239 (302)
T 3hem_A 216 PGGRLPRISQVDYYSSNAGWKVER 239 (302)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCHHHHHHHHHhCCcEEEE
Confidence 233567889999999998875443
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=132.19 Aligned_cols=123 Identities=20% Similarity=0.311 Sum_probs=94.0
Q ss_pred CCCCCEEEEECCCCCHH-HHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec-cc
Q 025071 113 LFNESKALSIGARVGQE-VAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN-VF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~-~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l 176 (258)
..++.+|||+|||+|.. ...+++.|. +|+|+|+++. ...+.++|+.++|+++++||+|++. ++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 34678999999999997 556666664 8999998742 2457889999999999999999995 78
Q ss_pred ccc--CChHHHHHHHHhcccCCcEEEEEeccccCcC----------cCC--------CCCCCChhHHHHHhhcCceEEee
Q 025071 177 DHA--LYPWKFVGEIERTLKPAGVCVLHVALSRRAD----------KYS--------ANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 177 ~h~--~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~----------~y~--------~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+|+ .++..+++++.|+|||||++++......... .|. ...+++.+++.++|.+.|+....
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~ 179 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE 179 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence 888 5778899999999999999998764321100 010 11346889999999999876443
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.7e-16 Score=129.55 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=92.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------CCceeeecCCCC---CCCCCC-eeEEEec-ccccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------PPLVIKGDFHAQ---PFDNGT-FDFEFSN-VFDHA 179 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------~~~~~~aDa~~L---Pf~d~S-FD~V~s~-~l~h~ 179 (258)
.++.+|||||||+|..+..+++.|. +|+|+|+++. ...+..+|+..+ |+.++. ||+|+++ +++ .
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~ 128 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-H 128 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-S
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-h
Confidence 3568999999999999999998875 8999999752 234667776666 666554 9999996 566 7
Q ss_pred CChHHHHHHHHhcccCCcEEEEEeccccCcC------c-----C---------CCCCCCChhHHHHHhhcCceEEeeee
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLHVALSRRAD------K-----Y---------SANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~------~-----y---------~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
.++..+++++.|+|||||++++..+...... . + ....+++.+++.++++++|+..+...
T Consensus 129 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 207 (227)
T 3e8s_A 129 QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQ 207 (227)
T ss_dssp SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEe
Confidence 8899999999999999999999865321100 0 1 01123589999999999998765533
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=128.51 Aligned_cols=138 Identities=18% Similarity=0.170 Sum_probs=96.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCeeEEEec-cccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDH 178 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h 178 (258)
..++.+|||+|||+|..+..+++.+. +|+|+|+++. ...++++|+.+++ ++++||+|+++ +++|
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHh
Confidence 34668999999999999999988774 8999998742 2357889999998 78999999995 8999
Q ss_pred cCChH---HHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhc-CceEEeeeecCCCCe---EEEEEEe
Q 025071 179 ALYPW---KFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRE-SELVAVRKVDGFGLD---TEVVFRK 251 (258)
Q Consensus 179 ~~~p~---~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~-~~~~~v~~v~g~~l~---~~~~f~K 251 (258)
+.++. .+++++.|+|||||.+++..+..+....+ ......+.+..++.+ .+.+......+.... ...+|+|
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~l~~~~~ 204 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRW--GHVAGAETVITILTEALTEVERVQCQGQSADEDCLLARFRN 204 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHT--TCSCCHHHHHHHHHHHSEEEEEEEEECSSTTCEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhh--hhhhhHHHHHHHHHhhccceEEEeccCCccccchhHHHHhC
Confidence 99884 66999999999999999976543211111 123456667677653 333222222222222 3566777
Q ss_pred CCc
Q 025071 252 KKK 254 (258)
Q Consensus 252 ~~~ 254 (258)
.+.
T Consensus 205 ~~~ 207 (216)
T 3ofk_A 205 PER 207 (216)
T ss_dssp CC-
T ss_pred Ccc
Confidence 554
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=124.97 Aligned_cols=116 Identities=20% Similarity=0.216 Sum_probs=94.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEec--cccccC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSN--VFDHAL 180 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~--~l~h~~ 180 (258)
+.++.+|||+|||+|..+..+++.|. +++|+|+++. ...+.++|+.++|+++++||+|+++ +++|..
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 46788999999999999999988874 8999998752 2457889999999999999999995 566663
Q ss_pred --ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 181 --YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 181 --~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
+...+++++.|+|||||.+++..+.. ..++.+++.+++.+.|+..+...
T Consensus 123 ~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------~~~~~~~~~~~l~~~Gf~~~~~~ 173 (195)
T 3cgg_A 123 EDGREPALANIHRALGADGRAVIGFGAG---------RGWVFGDFLEVAERVGLELENAF 173 (195)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEETT---------SSCCHHHHHHHHHHHTEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEeCCC---------CCcCHHHHHHHHHHcCCEEeeee
Confidence 34678999999999999999976532 22578999999999998765544
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-16 Score=146.39 Aligned_cols=123 Identities=18% Similarity=0.261 Sum_probs=95.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCC-----------------------CCceeeecCCCC------
Q 025071 113 LFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPR-----------------------PPLVIKGDFHAQ------ 161 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~-----------------------~~~~~~aDa~~L------ 161 (258)
..++.+|||||||+|..+..+++. ...+|+|+|+++. ...++++|++++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 346789999999999999888764 2348999998741 234688999988
Q ss_pred CCCCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCc-C----------cCCCCCCCChhHHHHHhhc
Q 025071 162 PFDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA-D----------KYSANDLFSVKPLVKLFRE 229 (258)
Q Consensus 162 Pf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-~----------~y~~~~~~s~~~l~~lf~~ 229 (258)
|+++++||+|+++ +++|+.++..+++|+.|+|||||++++........ . .......++.+++.+++++
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 240 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAE 240 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHH
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHH
Confidence 9999999999995 88999999999999999999999999874322110 0 0012234678999999999
Q ss_pred CceEEe
Q 025071 230 SELVAV 235 (258)
Q Consensus 230 ~~~~~v 235 (258)
.|+..+
T Consensus 241 aGF~~v 246 (383)
T 4fsd_A 241 AGFRDV 246 (383)
T ss_dssp TTCCCE
T ss_pred CCCceE
Confidence 987543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.67 E-value=9.3e-16 Score=130.97 Aligned_cols=118 Identities=24% Similarity=0.384 Sum_probs=94.5
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------CCceeeecCCCCCCCCCCeeEEEec-cccccCChHHH
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKF 185 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~ 185 (258)
++.+|||||||+|..+..+++. +|+|+++. ...+.++|+..+|+++++||+|++. +++|+.++..+
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 121 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERA 121 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHH
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHHH
Confidence 3789999999999999888653 89998742 3457889999999999999999995 89999999999
Q ss_pred HHHHHhcccCCcEEEEEeccccCc-----------C-cCCCCCCCChhHHHHHhhcCceEEeee
Q 025071 186 VGEIERTLKPAGVCVLHVALSRRA-----------D-KYSANDLFSVKPLVKLFRESELVAVRK 237 (258)
Q Consensus 186 l~Ei~RVLKPGG~lii~v~~~~~~-----------~-~y~~~~~~s~~~l~~lf~~~~~~~v~~ 237 (258)
++++.|+|||||.+++..+..... . .+.....++.+++.++++++|+..+..
T Consensus 122 l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 122 LKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp HHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence 999999999999999986532110 0 112334579999999999999765443
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-16 Score=135.51 Aligned_cols=91 Identities=22% Similarity=0.250 Sum_probs=78.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------CCceeeecCCCCCCCCCCeeEEEec-ccccc-CCh
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHA-LYP 182 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~-~~p 182 (258)
.++.+|||||||+|..+..+++.|. +++|+|+++. ...+.++|+.++|+++++||+|++. ++.|+ .++
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~ 131 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK 131 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred CCCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhccccH
Confidence 3778999999999999999988875 8999998742 1237889999999999999999995 56665 689
Q ss_pred HHHHHHHHhcccCCcEEEEEecc
Q 025071 183 WKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
..+++|+.|+|||||.+++.++.
T Consensus 132 ~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 132 DKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999999999999999987653
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-15 Score=129.54 Aligned_cols=119 Identities=18% Similarity=0.138 Sum_probs=91.3
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-ccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~ 177 (258)
++.+|||||||+|..+..|++.|. +|+|+|+++. ...++++|+.+++ ++++||+|++. +++
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFC 143 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTT
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhh
Confidence 345999999999999999987664 7999998742 1347889999988 45699999995 788
Q ss_pred ccC--ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEee
Q 025071 178 HAL--YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 178 h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
|+. ++..+++++.|+|||||++++........ .......++.+++.++|.+.|+..+.
T Consensus 144 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 144 AIEPEMRPAWAKSMYELLKPDGELITLMYPITDH-VGGPPYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp TSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC-CSCSSCCCCHHHHHHHHGGGTEEEEE
T ss_pred cCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc-CCCCCccCCHHHHHHHHHHcCCeEEE
Confidence 887 78899999999999999998865422110 10111226889999999999876544
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-17 Score=142.90 Aligned_cols=123 Identities=16% Similarity=0.083 Sum_probs=88.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC-----------------------------------------
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP----------------------------------------- 151 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~----------------------------------------- 151 (258)
..++.+|||||||+|.....++..|+.+|+|+|+|+...
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 346789999999999887776677766799999984200
Q ss_pred ----ceeeecCCC-CCCC---CCCeeEEEec-ccccc----CChHHHHHHHHhcccCCcEEEEEeccccCc---CcC-CC
Q 025071 152 ----LVIKGDFHA-QPFD---NGTFDFEFSN-VFDHA----LYPWKFVGEIERTLKPAGVCVLHVALSRRA---DKY-SA 214 (258)
Q Consensus 152 ----~~~~aDa~~-LPf~---d~SFD~V~s~-~l~h~----~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~---~~y-~~ 214 (258)
.++++|+.+ .|++ +++||+|++. +++|+ .+...++++++|+|||||++++........ ... ..
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~ 212 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 212 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEee
Confidence 156788777 4654 6899999995 77775 344678999999999999999975322110 000 01
Q ss_pred CCCCChhHHHHHhhcCceEEe
Q 025071 215 NDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 215 ~~~~s~~~l~~lf~~~~~~~v 235 (258)
...++.+++.+++.+.|+..+
T Consensus 213 ~~~~~~~~l~~~l~~aGF~i~ 233 (263)
T 2a14_A 213 CVALEKGEVEQAVLDAGFDIE 233 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEE
Confidence 123588999999999997543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=129.01 Aligned_cols=121 Identities=15% Similarity=0.110 Sum_probs=90.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC--------------------CCceeeecCCCCCCCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR--------------------PPLVIKGDFHAQPFDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~--------------------~~~~~~aDa~~LPf~d~SFD~V~ 172 (258)
.++.+|||||||+|..+..+++.+ ..+|+|+|+++. ...+.++|+..+++++++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 367899999999999999998865 358999998641 23577889988899899999999
Q ss_pred ec-cccccCCh--HHHHHHHHhcccCCcEEEEEecccc-----CcC----cC-CCCCCCChhHHH----HHhhcCceEE
Q 025071 173 SN-VFDHALYP--WKFVGEIERTLKPAGVCVLHVALSR-----RAD----KY-SANDLFSVKPLV----KLFRESELVA 234 (258)
Q Consensus 173 s~-~l~h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~-----~~~----~y-~~~~~~s~~~l~----~lf~~~~~~~ 234 (258)
+. +++|+.++ ..+++++.|+|||||++++...... ... .+ .....++.+++. +++++.|+.-
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v 186 (217)
T 3jwh_A 108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNV 186 (217)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEE
T ss_pred eHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceE
Confidence 95 89999877 7899999999999996666533210 000 00 111225888888 7778888743
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-15 Score=131.52 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=97.1
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CC-CcEEEEeCCCC----------------------CCceeeec---C
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLV-GV-SDSIGIDLVPR----------------------PPLVIKGD---F 158 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~-~~v~GvD~s~~----------------------~~~~~~aD---a 158 (258)
.+++...+.++.+|||||||+|..+..+++. |. .+|+|+|+++. ...+..+| .
T Consensus 34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 113 (275)
T 3bkx_A 34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD 113 (275)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh
Confidence 3344334678899999999999999998875 43 58999999864 12356777 6
Q ss_pred CCCCCCCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCc--C---------------------cCCC
Q 025071 159 HAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA--D---------------------KYSA 214 (258)
Q Consensus 159 ~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~--~---------------------~y~~ 214 (258)
..+||++++||+|++. +++|+.++..+++.+.++++|||++++........ . ....
T Consensus 114 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T 3bkx_A 114 DLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANI 193 (275)
T ss_dssp CCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSC
T ss_pred ccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccc
Confidence 7889999999999995 89999999887777777777799998874322100 0 0112
Q ss_pred CCCCChhHHHHHhhcCceEEeee
Q 025071 215 NDLFSVKPLVKLFRESELVAVRK 237 (258)
Q Consensus 215 ~~~~s~~~l~~lf~~~~~~~v~~ 237 (258)
..+++.+++.++++++|+..+..
T Consensus 194 ~~~~s~~~l~~~l~~aGf~~~~~ 216 (275)
T 3bkx_A 194 RTLITPDTLAQIAHDNTWTYTAG 216 (275)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEC
T ss_pred cccCCHHHHHHHHHHCCCeeEEE
Confidence 24579999999999999766543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-16 Score=138.56 Aligned_cols=125 Identities=13% Similarity=0.124 Sum_probs=97.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec-
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
.+.++.+|||||||+|..+..+++. + ..+|+|+|+++. ...+.++|+.++|++ ++||+|++.
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~ 97 (284)
T 3gu3_A 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHA 97 (284)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEES
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECC
Confidence 3457889999999999999999875 2 258999999752 234788999999995 699999995
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEecc-----cc---CcC-------------------cCCCCCCCChhHHHHHh
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVAL-----SR---RAD-------------------KYSANDLFSVKPLVKLF 227 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~-----~~---~~~-------------------~y~~~~~~s~~~l~~lf 227 (258)
+++|+.++..++++++|+|||||++++..+. .. ... ..........+++.+++
T Consensus 98 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 177 (284)
T 3gu3_A 98 FLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYL 177 (284)
T ss_dssp CGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHHH
Confidence 8899999999999999999999999987654 10 000 00122344567899999
Q ss_pred hcCceEEeee
Q 025071 228 RESELVAVRK 237 (258)
Q Consensus 228 ~~~~~~~v~~ 237 (258)
+++|+.++..
T Consensus 178 ~~aGF~~v~~ 187 (284)
T 3gu3_A 178 SELGVKNIEC 187 (284)
T ss_dssp HHTTCEEEEE
T ss_pred HHcCCCeEEE
Confidence 9999987765
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-15 Score=126.82 Aligned_cols=92 Identities=24% Similarity=0.332 Sum_probs=77.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC--------------CCCceeeecCCCCCCCCCCeeEEEec-c--
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP--------------RPPLVIKGDFHAQPFDNGTFDFEFSN-V-- 175 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~--------------~~~~~~~aDa~~LPf~d~SFD~V~s~-~-- 175 (258)
+.++.+|||+|||+|..+..+++.+. +++|+|+++ ....++++|+.++|+++++||+|+++ +
T Consensus 36 ~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 36 MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred cCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 45578999999999999999988875 899999874 12457889999999999999999995 5
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEecc
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
++|..++..+++++.|+|||||++++..+.
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 555567788999999999999999887553
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=137.51 Aligned_cols=130 Identities=15% Similarity=0.091 Sum_probs=98.9
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCCCCCC
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDN 165 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d 165 (258)
.++.+++...+.++.+|||||||+|..+..+++. |. +|+|+|+++. ...+..+|+.++|
T Consensus 78 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 153 (318)
T 2fk8_A 78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--- 153 (318)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---
T ss_pred HHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---
Confidence 3444554445667889999999999999988875 75 8999998742 1346788888876
Q ss_pred CCeeEEEec-ccccc--CChHHHHHHHHhcccCCcEEEEEeccccCcC-----------------------cCCCCCCCC
Q 025071 166 GTFDFEFSN-VFDHA--LYPWKFVGEIERTLKPAGVCVLHVALSRRAD-----------------------KYSANDLFS 219 (258)
Q Consensus 166 ~SFD~V~s~-~l~h~--~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~-----------------------~y~~~~~~s 219 (258)
++||+|++. +++|+ .++..+++|+.|+|||||++++..+...... .+....+++
T Consensus 154 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 233 (318)
T 2fk8_A 154 EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 233 (318)
T ss_dssp CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCC
Confidence 799999995 88998 5788999999999999999999865432100 012345678
Q ss_pred hhHHHHHhhcCceEEee
Q 025071 220 VKPLVKLFRESELVAVR 236 (258)
Q Consensus 220 ~~~l~~lf~~~~~~~v~ 236 (258)
.+++.++++++|+..+.
T Consensus 234 ~~~~~~~l~~aGf~~~~ 250 (318)
T 2fk8_A 234 TEMMVEHGEKAGFTVPE 250 (318)
T ss_dssp HHHHHHHHHHTTCBCCC
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 99999999999876443
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-16 Score=142.29 Aligned_cols=121 Identities=17% Similarity=0.070 Sum_probs=85.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC-------------------------------------------
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP------------------------------------------- 151 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~------------------------------------------- 151 (258)
++.+|||||||+|.....++..+..+|+|+|+++...
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 6789999999999955444443335899999975211
Q ss_pred --ceeeecCCC-CCCC-----CCCeeEEEec-cccc----cCChHHHHHHHHhcccCCcEEEEEeccccCc----CcCCC
Q 025071 152 --LVIKGDFHA-QPFD-----NGTFDFEFSN-VFDH----ALYPWKFVGEIERTLKPAGVCVLHVALSRRA----DKYSA 214 (258)
Q Consensus 152 --~~~~aDa~~-LPf~-----d~SFD~V~s~-~l~h----~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~----~~y~~ 214 (258)
.++++|+.+ +||+ +++||+|+++ +++| ..++..+++|++|+|||||++++........ +.-..
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~ 230 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT 230 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeee
Confidence 123348887 7754 4679999995 7888 5578899999999999999999863221110 00011
Q ss_pred CCCCChhHHHHHhhcCceEEe
Q 025071 215 NDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 215 ~~~~s~~~l~~lf~~~~~~~v 235 (258)
...++.+++.+++.++|+..+
T Consensus 231 ~~~~~~~~l~~~l~~aGf~~~ 251 (289)
T 2g72_A 231 VVPVSEEEVREALVRSGYKVR 251 (289)
T ss_dssp CCCCCHHHHHHHHHHTTEEEE
T ss_pred eccCCHHHHHHHHHHcCCeEE
Confidence 335689999999999997543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=135.10 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=93.2
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec-ccccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHA 179 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~ 179 (258)
++.+|||+|||+|..+..|++.|. +|+|+|+++. ...+.++|+.++++ +++||+|+++ +++|+
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 197 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFL 197 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhC
Confidence 678999999999999999998876 8999998742 23578899999988 8899999996 78887
Q ss_pred CCh--HHHHHHHHhcccCCcEEEEEeccccCcCcC--CCCCCCChhHHHHHhhcCceEEee
Q 025071 180 LYP--WKFVGEIERTLKPAGVCVLHVALSRRADKY--SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 180 ~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y--~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
..+ ..+++++.|+|||||.+++........... .....++..++.++|.+.+++...
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 258 (286)
T 3m70_A 198 NRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKDWEFLEYN 258 (286)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcCCEEEEEE
Confidence 654 488999999999999988765433221111 123346889999999887766553
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.5e-16 Score=137.29 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=76.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHh--cCCCcEEEEeCCCC-----------------CCceeeecCCCCCCCC------CCe
Q 025071 114 FNESKALSIGARVGQEVAALKL--VGVSDSIGIDLVPR-----------------PPLVIKGDFHAQPFDN------GTF 168 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~--~g~~~v~GvD~s~~-----------------~~~~~~aDa~~LPf~d------~SF 168 (258)
.++.+|||||||+|..+..|++ .+..+|+|+|+++. ...++++|++++|+++ ++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 5788999999999999999985 24568999998741 2347889999999988 999
Q ss_pred eEEEec-cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 169 DFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 169 D~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+|+++ +++|+ ++..+++++.|+|||||.+++.
T Consensus 115 D~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 115 DMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp EEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEE
Confidence 999995 78888 9999999999999999999884
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=125.99 Aligned_cols=123 Identities=14% Similarity=0.157 Sum_probs=92.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEeccccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h 178 (258)
+.++ +|||||||+|..+..+++.|. +++|+|+++. ...+.++|+.++|+++++||+|++. +.|
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~-~~~ 104 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI-FCH 104 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE-CCC
T ss_pred CCCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE-hhc
Confidence 3456 999999999999999998875 8999998742 2346788999999999999999994 444
Q ss_pred c--CChHHHHHHHHhcccCCcEEEEEeccccCc-----CcCCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 179 A--LYPWKFVGEIERTLKPAGVCVLHVALSRRA-----DKYSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 179 ~--~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-----~~y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
. .++..+++++.|+|||||.+++........ ........++.+++.++|.+..++.+...
T Consensus 105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~Gf~v~~~~~~ 171 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELPSLNWLIANNL 171 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCSSSCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhcCceEEEEEEE
Confidence 4 356788999999999999999986533211 01112345799999999995455554443
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-16 Score=130.10 Aligned_cols=92 Identities=21% Similarity=0.241 Sum_probs=77.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCeeEEEec-cccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDH 178 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h 178 (258)
+.++.+|||+|||+|..+..+++.|..+++|+|+++. ...+.++|+.++|+++++||+|+++ .++|
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 4678899999999999999998887658999998742 2357889999999999999999985 5544
Q ss_pred cC---------------ChHHHHHHHHhcccCCcEEEEEec
Q 025071 179 AL---------------YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 179 ~~---------------~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+. ++..+++++.|+|||||++++..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 43 557899999999999999999765
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-15 Score=127.53 Aligned_cols=89 Identities=15% Similarity=0.075 Sum_probs=73.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec--cc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN--VF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~--~l 176 (258)
+.++.+|||+|||+|..+..+++. .+++|+|+++. ...+.++|+.++|++ ++||+|++. ++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSL 107 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGG
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCch
Confidence 456789999999999999988876 58999998742 235788999999987 899999984 78
Q ss_pred cccC---ChHHHHHHHHhcccCCcEEEEEec
Q 025071 177 DHAL---YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 177 ~h~~---~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+|+. ++..+++++.|+|||||++++.++
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 8884 456789999999999999998653
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=136.73 Aligned_cols=123 Identities=12% Similarity=-0.002 Sum_probs=85.7
Q ss_pred CCCCEEEEECCCCCHHHH----HHHhc-CCCcE--EEEeCCCCC--------------C----ceeeecCCCCC------
Q 025071 114 FNESKALSIGARVGQEVA----ALKLV-GVSDS--IGIDLVPRP--------------P----LVIKGDFHAQP------ 162 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~----~L~~~-g~~~v--~GvD~s~~~--------------~----~~~~aDa~~LP------ 162 (258)
.++.+|||||||+|..+. .+... +...| +|+|+|+.+ . .+..++++.++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 456799999999997653 33332 22233 999987421 1 12344555443
Q ss_pred CCCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCc-----Cc----C---CCCCCCChhHHHHHhhc
Q 025071 163 FDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA-----DK----Y---SANDLFSVKPLVKLFRE 229 (258)
Q Consensus 163 f~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-----~~----y---~~~~~~s~~~l~~lf~~ 229 (258)
|++++||+|++. +++|+.++..+++|++|+|||||++++........ .. . .....++.+++.+++.+
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDN 210 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHH
T ss_pred cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHH
Confidence 789999999995 89999999999999999999999999875432110 00 1 11245688999999999
Q ss_pred CceEEee
Q 025071 230 SELVAVR 236 (258)
Q Consensus 230 ~~~~~v~ 236 (258)
.|+..+.
T Consensus 211 aGf~~~~ 217 (292)
T 2aot_A 211 LGLKYEC 217 (292)
T ss_dssp HTCCEEE
T ss_pred CCCceEE
Confidence 9975444
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-15 Score=133.86 Aligned_cols=89 Identities=16% Similarity=0.259 Sum_probs=72.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------------CCceeeecCCCCCCCCCCeeEEEec--
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------------PPLVIKGDFHAQPFDNGTFDFEFSN-- 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------------~~~~~~aDa~~LPf~d~SFD~V~s~-- 174 (258)
.+.+|||||||+|..+..|++.|. +|+|+|+++. ...++++|+.++|+ +++||+|++.
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~ 159 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSG 159 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHH
T ss_pred CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCc
Confidence 445999999999999999998875 7999999741 23478999999998 7899999863
Q ss_pred cccccC--ChHHHHHHHHhcccCCcEEEEEecc
Q 025071 175 VFDHAL--YPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 175 ~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
+++|.. +...+++++.|+|||||++++.+..
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 160 SINELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp HHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 455544 2367899999999999999998653
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.1e-16 Score=136.23 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC-------------------CceeeecCCCCC---CCCCCeeEEE
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP-------------------PLVIKGDFHAQP---FDNGTFDFEF 172 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~-------------------~~~~~aDa~~LP---f~d~SFD~V~ 172 (258)
++.+|||||||+|..+..|++.|. +|+|+|+++.. ..+..+|+..+| +++++||+|+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~ 135 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI 135 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEE
Confidence 678999999999999999998876 89999997421 125778888888 9999999999
Q ss_pred e--ccccccCC-------hHHHHHHHHhcccCCcEEEEEecc
Q 025071 173 S--NVFDHALY-------PWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 173 s--~~l~h~~~-------p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
+ ++++|+.+ +..++++++|+|||||++++.++.
T Consensus 136 ~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 136 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp ECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 8 48999999 899999999999999999988653
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=125.28 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=76.7
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCe
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTF 168 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SF 168 (258)
+++.++......++.+|||+|||+|..+..|++.|. +|+|+|+++. ...++++|+.++|++ ++|
T Consensus 29 ~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~f 106 (252)
T 1wzn_A 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEF 106 (252)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCE
T ss_pred HHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCc
Confidence 344444433345678999999999999999998875 8999998742 235788999999876 689
Q ss_pred eEEEec--cccccC--ChHHHHHHHHhcccCCcEEEEEec
Q 025071 169 DFEFSN--VFDHAL--YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 169 D~V~s~--~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|+|++. .++|.. ++..+++++.|+|||||.+++.++
T Consensus 107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 999974 344432 456789999999999999988654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-15 Score=130.36 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=91.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------C-------------------------------
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------P------------------------------- 150 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------~------------------------------- 150 (258)
.++.+|||||||+|..+..+++.+..+|+|+|+++. .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 466899999999999998888776558999998742 1
Q ss_pred -C-ceeeecCCCCC-CCC---CCeeEEEec-ccc----ccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCC------
Q 025071 151 -P-LVIKGDFHAQP-FDN---GTFDFEFSN-VFD----HALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYS------ 213 (258)
Q Consensus 151 -~-~~~~aDa~~LP-f~d---~SFD~V~s~-~l~----h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~------ 213 (258)
. .+.++|+.+++ +++ ++||+|++. +++ |..++..+++++.|+|||||++++....... .|.
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~--~~~~~~~~~ 212 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS--YYMIGEQKF 212 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC--EEEETTEEE
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc--eEEcCCccc
Confidence 2 56778888764 466 899999995 777 5557888999999999999999987643211 110
Q ss_pred CCCCCChhHHHHHhhcCceEEee
Q 025071 214 ANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 214 ~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
....++.+++.+++.+.|+..+.
T Consensus 213 ~~~~~~~~~~~~~l~~aGf~~~~ 235 (265)
T 2i62_A 213 SSLPLGWETVRDAVEEAGYTIEQ 235 (265)
T ss_dssp ECCCCCHHHHHHHHHHTTCEEEE
T ss_pred cccccCHHHHHHHHHHCCCEEEE
Confidence 12235778999999999875443
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-16 Score=136.32 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=72.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------CceeeecCCCC--CCCCCCeeEEEec---
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------PLVIKGDFHAQ--PFDNGTFDFEFSN--- 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------~~~~~aDa~~L--Pf~d~SFD~V~s~--- 174 (258)
.+|++|||||||+|..+.++++.+..+++|||+++.. ..++.+|++.+ ++++++||.|+..
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~ 138 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeee
Confidence 5788999999999999999988655689999997521 13566676543 6889999999853
Q ss_pred ---cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 ---VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ---~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+++|..++..+++|++|||||||++++.
T Consensus 139 ~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 139 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 4677778899999999999999999874
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-15 Score=127.32 Aligned_cols=120 Identities=9% Similarity=0.005 Sum_probs=86.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC-------------------CCceeeecCCCCCCCCCCeeEEE
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR-------------------PPLVIKGDFHAQPFDNGTFDFEF 172 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~-------------------~~~~~~aDa~~LPf~d~SFD~V~ 172 (258)
..++.+|||||||+|..+..|++.+ ..+|+|+|+++. ...++++|++++|+++++ |.|+
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~ 103 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH 103 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence 4577899999999999999998763 358999999763 124678999999999888 8777
Q ss_pred ec----cc--cccCChHHHHHHHHhcccCCcEEEEEeccccCcCc---CCCCCC----CChhHHHHHhhcCceE
Q 025071 173 SN----VF--DHALYPWKFVGEIERTLKPAGVCVLHVALSRRADK---YSANDL----FSVKPLVKLFRESELV 233 (258)
Q Consensus 173 s~----~l--~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~---y~~~~~----~s~~~l~~lf~~~~~~ 233 (258)
.. .. +|+.++..+++|++|+|||||++++.+........ ...... +..+++..++.+.|+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 177 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWK 177 (218)
T ss_dssp EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEE
T ss_pred EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCC
Confidence 42 22 37788899999999999999999997543211110 000001 1234477788888864
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=125.33 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=91.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------CCceeeecCCC----CCCCCCCeeEEEec
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------PPLVIKGDFHA----QPFDNGTFDFEFSN 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------~~~~~~aDa~~----LPf~d~SFD~V~s~ 174 (258)
+.++.+|||+|||+|..+..+++. |...|+|+|+++. ...++.+|+.. +|+. ++||+|+.
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~- 149 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYE- 149 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEE-
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEE-
Confidence 557889999999999999998875 5458999998742 12367789888 8887 89999994
Q ss_pred cccccCCh---HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEee--eecCCCCe-EEEE
Q 025071 175 VFDHALYP---WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVR--KVDGFGLD-TEVV 248 (258)
Q Consensus 175 ~l~h~~~p---~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~--~v~g~~l~-~~~~ 248 (258)
+..+| ..+++++.|+|||||++++.+............ .+..+++. ++.+.|+..+. .++.+.-+ -.++
T Consensus 150 ---~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~ 224 (230)
T 1fbn_A 150 ---DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPK-EIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFV 224 (230)
T ss_dssp ---CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHH-HHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEE
T ss_pred ---ecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHH-HhhHHHHH-HHHHCCCEEEEEEccCCCccceEEEE
Confidence 34556 677999999999999998874321100000001 11235666 77877765444 44444333 4678
Q ss_pred EEeCC
Q 025071 249 FRKKK 253 (258)
Q Consensus 249 f~K~~ 253 (258)
++|+.
T Consensus 225 ~~k~~ 229 (230)
T 1fbn_A 225 GIWEG 229 (230)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 88764
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=119.51 Aligned_cols=123 Identities=13% Similarity=0.122 Sum_probs=94.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------CCceeeecCCCCCCCCCCeeEEEec-cccccCCh----
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYP---- 182 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p---- 182 (258)
.++.+|||+|||+|..+..+++.+ +|+|+|+++. ...++++|+.+ |+++++||+|+++ .+.+..++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~~ 98 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALESHRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPIIG 98 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHTCSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTTB
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhcccCCeEEECChhh-hcccCCCCEEEECCCCccCCcccccc
Confidence 356799999999999999999887 8999999753 34688999988 8888999999997 45544333
Q ss_pred -----HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeee-cCCCCeEEEEEEe
Q 025071 183 -----WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKV-DGFGLDTEVVFRK 251 (258)
Q Consensus 183 -----~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v-~g~~l~~~~~f~K 251 (258)
..+++++.+.| |||++++..... ...+++.+++++.|+...... ..+++++.++.+.
T Consensus 99 ~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~~ 161 (170)
T 3q87_B 99 GGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------NRPKEVLARLEERGYGTRILKVRKILGETVYIIKG 161 (170)
T ss_dssp CCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------GCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEEE
T ss_pred CCcchHHHHHHHHhhC-CCCEEEEEEecC-----------CCHHHHHHHHHHCCCcEEEEEeeccCCceEEEEEE
Confidence 56889999999 999998875421 146889999999987654433 4667777666655
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-14 Score=121.57 Aligned_cols=135 Identities=16% Similarity=0.117 Sum_probs=95.8
Q ss_pred cCCCCCCEEEEECCC-CCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCC-CCCCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGAR-VGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHA-QPFDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG-tG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~-LPf~d~SFD~V~s~ 174 (258)
..+.++.+|||+||| +|..+..+++.+..+|+|+|+++. ...++++|+.. .++++++||+|+++
T Consensus 51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~n 130 (230)
T 3evz_A 51 TFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSA 130 (230)
T ss_dssp TTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred hhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEEC
Confidence 346788999999999 999999988762348999998742 24577888643 36778999999996
Q ss_pred -cccccCC-------------------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE-
Q 025071 175 -VFDHALY-------------------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV- 233 (258)
Q Consensus 175 -~l~h~~~-------------------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~- 233 (258)
.+.+..+ ...+++++.|+|||||++++.++... ...+++.+++++.|+.
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------~~~~~~~~~l~~~g~~~ 200 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE----------KLLNVIKERGIKLGYSV 200 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------HHHHHHHHHHHHTTCEE
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------hHHHHHHHHHHHcCCce
Confidence 3322211 36789999999999999999765210 1357788899888863
Q ss_pred -EeeeecCCCCeEEEEEEeCCcC
Q 025071 234 -AVRKVDGFGLDTEVVFRKKKKK 255 (258)
Q Consensus 234 -~v~~v~g~~l~~~~~f~K~~~~ 255 (258)
.+....|......++|+|.++.
T Consensus 201 ~~~~~~~g~~~~~~l~f~~~~~~ 223 (230)
T 3evz_A 201 KDIKFKVGTRWRHSLIFFKGISE 223 (230)
T ss_dssp EEEEECCCC-CEEEEEEECCC--
T ss_pred EEEEecCCCeEEEEEEEeccccc
Confidence 3333356666689999986654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.6e-15 Score=127.04 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=83.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------CCceeeecC-CCCCCC-CCCeeEEEeccccccC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------PPLVIKGDF-HAQPFD-NGTFDFEFSNVFDHAL 180 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------~~~~~~aDa-~~LPf~-d~SFD~V~s~~l~h~~ 180 (258)
+.++.+|||||||+|..+..+++.|. +|+|+|+++. ...++++|+ +.+|++ +++||+|+++ .
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-----~ 119 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-----R 119 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-----S
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-----C
Confidence 45788999999999999999998874 8999999752 245788999 789999 9999999996 3
Q ss_pred ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEE
Q 025071 181 YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
++..+++++.|+|||||+++... ...+.+++.+++.++|+..
T Consensus 120 ~~~~~l~~~~~~LkpgG~l~~~~------------~~~~~~~~~~~l~~~Gf~~ 161 (226)
T 3m33_A 120 GPTSVILRLPELAAPDAHFLYVG------------PRLNVPEVPERLAAVGWDI 161 (226)
T ss_dssp CCSGGGGGHHHHEEEEEEEEEEE------------SSSCCTHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHcCCCcEEEEeC------------CcCCHHHHHHHHHHCCCeE
Confidence 56778899999999999998211 1224577888888877654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-15 Score=133.26 Aligned_cols=138 Identities=17% Similarity=0.274 Sum_probs=94.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------------------------------------------
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------------------------------------- 149 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------------------------------------- 149 (258)
++.+|||||||+|..+..+++. +..+|+|+|+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 5789999999999999998875 4468999998631
Q ss_pred -----------------------------CCceeeecCCCCC-----CCCCCeeEEEec-cccccC------ChHHHHHH
Q 025071 150 -----------------------------PPLVIKGDFHAQP-----FDNGTFDFEFSN-VFDHAL------YPWKFVGE 188 (258)
Q Consensus 150 -----------------------------~~~~~~aDa~~LP-----f~d~SFD~V~s~-~l~h~~------~p~~~l~E 188 (258)
...+.++|+...+ +.+++||+|+|. +++|+. ++.+++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 1235667766544 788999999995 565553 67789999
Q ss_pred HHhcccCCcEEEEEeccc---cCcC--------cCCCCCCCChhHHHHHhhc--CceEEeeeecC-----CCCe-EEEEE
Q 025071 189 IERTLKPAGVCVLHVALS---RRAD--------KYSANDLFSVKPLVKLFRE--SELVAVRKVDG-----FGLD-TEVVF 249 (258)
Q Consensus 189 i~RVLKPGG~lii~v~~~---~~~~--------~y~~~~~~s~~~l~~lf~~--~~~~~v~~v~g-----~~l~-~~~~f 249 (258)
++|+|||||++++....- .... .|. .-.+..+++.+++.+ +|+..+..+.. .+.+ ...+|
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~-~~~~~p~~~~~~L~~~~~GF~~~~~~~~~~~~~~g~~r~i~~~ 284 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYY-RIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVYLF 284 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHH-HCCCCGGGHHHHHTSTTTCCCEEEEC-----------CCCEEE
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhh-cEEEcHHHHHHHHHhcCCCceEEEEeccCCCCCCCccceEEEE
Confidence 999999999999863210 0000 011 011356889999998 89876665532 2232 37788
Q ss_pred EeCC
Q 025071 250 RKKK 253 (258)
Q Consensus 250 ~K~~ 253 (258)
+|+.
T Consensus 285 ~k~~ 288 (292)
T 3g07_A 285 HKAR 288 (292)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 8864
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-15 Score=131.70 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=71.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCC--CCCCCCeeEEEe-c-
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQ--PFDNGTFDFEFS-N- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~L--Pf~d~SFD~V~s-~- 174 (258)
..++.+|||||||+|..+..+++.+..+|+|+|+++. ...++++|++++ ||++++||+|++ .
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 3567899999999999999998766568999998742 124678899888 999999999999 3
Q ss_pred cc----cccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VF----DHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l----~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+ .|..++..+++|++|+|||||++++.
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 22 12223446789999999999999875
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.2e-15 Score=127.76 Aligned_cols=111 Identities=13% Similarity=-0.007 Sum_probs=83.4
Q ss_pred hhhCchhHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------CCce
Q 025071 86 AVWTTRDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------PPLV 153 (258)
Q Consensus 86 ~~W~~~~w~~~~~~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------~~~~ 153 (258)
.+|+...|....... ..+. ..+.++.+|||||||+|..+..|++.+. +|+|+|+++. ...+
T Consensus 33 ~~~~~~~~~~~~~~~----~~~~--~~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~ 105 (245)
T 3ggd_A 33 VLWDANVERAVVVDL----PRFE--LLFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAANISY 105 (245)
T ss_dssp CTTCCCGGGTHHHHH----HHHT--TTSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCCTTEEE
T ss_pred ceecchhHHHHHHHH----HHHh--hccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcccCceE
Confidence 467766665443322 2221 2356778999999999999999998876 8999998742 2357
Q ss_pred eeecCCCCCCCC-----CCeeEEEec-cccccC--ChHHHHHHHHhcccCCcEEEEEe
Q 025071 154 IKGDFHAQPFDN-----GTFDFEFSN-VFDHAL--YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 154 ~~aDa~~LPf~d-----~SFD~V~s~-~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+++|+.++++.. .+||+|+++ +++|+. ++..+++++.|+|||||++++..
T Consensus 106 ~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 106 RLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp EECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred EECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 888988876543 359999995 778887 67899999999999999987764
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=128.07 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=99.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC-----------C----CCceeeecCCCC--CCCCCCeeEEEec-
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVP-----------R----PPLVIKGDFHAQ--PFDNGTFDFEFSN- 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~-----------~----~~~~~~aDa~~L--Pf~d~SFD~V~s~- 174 (258)
....+|||||||+|..+..+++. +..+++++|+.. . ...++.+|+.+. |++ ++||+|++.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ 256 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence 35679999999999999998764 334799999721 0 134678898875 676 789999995
Q ss_pred cccccCChH--HHHHHHHhcccCCcEEEEEeccccCcC------------------cCCCCCCCChhHHHHHhhcCceEE
Q 025071 175 VFDHALYPW--KFVGEIERTLKPAGVCVLHVALSRRAD------------------KYSANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 175 ~l~h~~~p~--~~l~Ei~RVLKPGG~lii~v~~~~~~~------------------~y~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
+++|+.++. +++++++|+|||||++++......... .......++.+++.++++++|+..
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~ 336 (363)
T 3dp7_A 257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEV 336 (363)
T ss_dssp CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEE
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeE
Confidence 788877664 678999999999999988643221100 011234578999999999999988
Q ss_pred eeeecCCCC-eEEEEEEeCCcCC
Q 025071 235 VRKVDGFGL-DTEVVFRKKKKKS 256 (258)
Q Consensus 235 v~~v~g~~l-~~~~~f~K~~~~~ 256 (258)
+......+. .+.+..+|.....
T Consensus 337 v~~~~~~g~~~svi~~~~~~~~~ 359 (363)
T 3dp7_A 337 EEIQDNIGLGHSILQCRLKEGHH 359 (363)
T ss_dssp SCCCCCBTTTBEEEEEEEC----
T ss_pred EEEEeCCCCCceEEEEeeccccc
Confidence 776643333 3666666654433
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-14 Score=113.40 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=75.6
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CC-CcEEEEeCCCC----CCceeeecCCCCC--------CCCCCeeEEEec-cc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GV-SDSIGIDLVPR----PPLVIKGDFHAQP--------FDNGTFDFEFSN-VF 176 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~-~~v~GvD~s~~----~~~~~~aDa~~LP--------f~d~SFD~V~s~-~l 176 (258)
.+.++.+|||+|||+|..+..+++. |. .+++|+|+++. ...+.++|+.+++ +++++||+|+++ .+
T Consensus 19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~ 98 (180)
T 1ej0_A 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAP 98 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCCceeEEEECCCc
Confidence 3567889999999999999988875 42 58999999871 1246788998887 888999999996 55
Q ss_pred cccCCh-----------HHHHHHHHhcccCCcEEEEEec
Q 025071 177 DHALYP-----------WKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 177 ~h~~~p-----------~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++..++ ..+++++.|+|||||.+++...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 99 NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 555555 6889999999999999998754
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-13 Score=124.95 Aligned_cols=142 Identities=13% Similarity=0.061 Sum_probs=99.3
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC-------------CCCceeeecCCCCCCCCCCeeEE
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVP-------------RPPLVIKGDFHAQPFDNGTFDFE 171 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~-------------~~~~~~~aDa~~LPf~d~SFD~V 171 (258)
.+++...+.++.+|||||||+|..+..+++. +...++++|++. ....++.+|+. .|++ +||+|
T Consensus 175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v 251 (348)
T 3lst_A 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVH 251 (348)
T ss_dssp HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEE
T ss_pred HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEE
Confidence 3444444567789999999999999988764 334689999631 01246788885 3444 89999
Q ss_pred Eec-cccccCCh--HHHHHHHHhcccCCcEEEEEeccccCc--Cc-----------CCCCCCCChhHHHHHhhcCceEEe
Q 025071 172 FSN-VFDHALYP--WKFVGEIERTLKPAGVCVLHVALSRRA--DK-----------YSANDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 172 ~s~-~l~h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~~--~~-----------y~~~~~~s~~~l~~lf~~~~~~~v 235 (258)
++. +++|+.++ .++++|++|+|||||++++........ .. ......++.+++.++++++|+..+
T Consensus 252 ~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 331 (348)
T 3lst_A 252 VLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLD 331 (348)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEE
T ss_pred EEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceE
Confidence 995 88888887 589999999999999998874322111 00 112234689999999999998877
Q ss_pred eeecCCCCeEEEEEE
Q 025071 236 RKVDGFGLDTEVVFR 250 (258)
Q Consensus 236 ~~v~g~~l~~~~~f~ 250 (258)
......+....+..+
T Consensus 332 ~~~~~~~~~~vie~~ 346 (348)
T 3lst_A 332 RVVGTSSVMSIAVGV 346 (348)
T ss_dssp EEEECSSSCEEEEEE
T ss_pred EEEECCCCcEEEEEE
Confidence 665533443444444
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=132.39 Aligned_cols=90 Identities=12% Similarity=0.079 Sum_probs=67.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC---------------------CceeeecC------CCC--CCCC
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP---------------------PLVIKGDF------HAQ--PFDN 165 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~---------------------~~~~~aDa------~~L--Pf~d 165 (258)
++.+|||||||+|..+..+...+..+|+|+|+|+.+ ..+.++|+ +++ ++++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 578999999999987665555555689999997521 11345555 333 4778
Q ss_pred CCeeEEEec-ccccc---CChHHHHHHHHhcccCCcEEEEEec
Q 025071 166 GTFDFEFSN-VFDHA---LYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 166 ~SFD~V~s~-~l~h~---~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++||+|+|. +++|+ .+...+++|++|+|||||++++.++
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 999999985 66654 3457899999999999999998865
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-13 Score=123.89 Aligned_cols=125 Identities=15% Similarity=0.218 Sum_probs=93.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC---------------CCCceeeecCCCCCCCCCCeeEEEe-ccc
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVP---------------RPPLVIKGDFHAQPFDNGTFDFEFS-NVF 176 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~---------------~~~~~~~aDa~~LPf~d~SFD~V~s-~~l 176 (258)
.++.+|||||||+|..+..+++. +..+++|+|++. ....++.+|+.+.|++++ ||+|++ +++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l 242 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFL 242 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCG
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchh
Confidence 57789999999999999988865 234899999861 013467889988888765 999999 588
Q ss_pred cccCCh--HHHHHHHHhcccCCcEEEEEeccccCcCc-------C--------CCCCCCChhHHHHHhhcCceEEeeeec
Q 025071 177 DHALYP--WKFVGEIERTLKPAGVCVLHVALSRRADK-------Y--------SANDLFSVKPLVKLFRESELVAVRKVD 239 (258)
Q Consensus 177 ~h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~~~~-------y--------~~~~~~s~~~l~~lf~~~~~~~v~~v~ 239 (258)
+|+.++ ..+++++.|+|||||++++.......... + .....++.+++.++++++|+..+...+
T Consensus 243 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~ 322 (335)
T 2r3s_A 243 HHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHS 322 (335)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEE
Confidence 888655 58899999999999998887443211100 0 134557899999999999986665443
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-14 Score=118.34 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=72.9
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhc-C--CCcEEEEeCCCCC----CceeeecCCCCC---------------------
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLV-G--VSDSIGIDLVPRP----PLVIKGDFHAQP--------------------- 162 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~-g--~~~v~GvD~s~~~----~~~~~aDa~~LP--------------------- 162 (258)
..+.++.+|||+|||+|..+..+++. + ..+|+|+|+++.. ..++++|+.+++
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 97 (201)
T 2plw_A 18 LFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYK 97 (201)
T ss_dssp CCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-----------CHHHHH
T ss_pred CCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCCCceEEEccccchhhhhhccccccccccchhhHHH
Confidence 34677889999999999999998864 3 3589999998742 357889998887
Q ss_pred ----CCCCCeeEEEec-ccccc----CChH-------HHHHHHHhcccCCcEEEEEec
Q 025071 163 ----FDNGTFDFEFSN-VFDHA----LYPW-------KFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 163 ----f~d~SFD~V~s~-~l~h~----~~p~-------~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+++++||+|+++ .+++. .+.. .+++++.|+|||||.+++.+.
T Consensus 98 ~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 98 LKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 788899999996 34332 2222 378999999999999988653
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-14 Score=119.24 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=87.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCCC--------------CceeeecCCCCCCCC-----CCeeEEEe
Q 025071 114 FNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPRP--------------PLVIKGDFHAQPFDN-----GTFDFEFS 173 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~~--------------~~~~~aDa~~LPf~d-----~SFD~V~s 173 (258)
.++.+|||+|||+|..+..+++.+ ..+++|+|+++.. ..++++|+.+ ++++ ++||+|++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVS 107 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEE
Confidence 577899999999999999988764 2489999997532 2345667666 7776 99999999
Q ss_pred c-cc------cccCC------h--------------HHHHHHHHhcccCCcE-EEEEeccccCcCcCCCCCCCChhHHHH
Q 025071 174 N-VF------DHALY------P--------------WKFVGEIERTLKPAGV-CVLHVALSRRADKYSANDLFSVKPLVK 225 (258)
Q Consensus 174 ~-~l------~h~~~------p--------------~~~l~Ei~RVLKPGG~-lii~v~~~~~~~~y~~~~~~s~~~l~~ 225 (258)
+ .+ +|+.. | ..+++++.|+|||||+ +++.++. ...+++.+
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------~~~~~~~~ 175 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH------------NQADEVAR 175 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT------------SCHHHHHH
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC------------ccHHHHHH
Confidence 5 11 22111 1 6678999999999999 5554431 13578888
Q ss_pred Hhh--cCceEEeeee-cCCCCeEEEEEEeCC
Q 025071 226 LFR--ESELVAVRKV-DGFGLDTEVVFRKKK 253 (258)
Q Consensus 226 lf~--~~~~~~v~~v-~g~~l~~~~~f~K~~ 253 (258)
++. +.|+..+... +..+..+.++.+|++
T Consensus 176 ~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~~ 206 (215)
T 4dzr_A 176 LFAPWRERGFRVRKVKDLRGIDRVIAVTREP 206 (215)
T ss_dssp HTGGGGGGTEECCEEECTTSCEEEEEEEECC
T ss_pred HHHHhhcCCceEEEEEecCCCEEEEEEEEcC
Confidence 998 8887766544 355566777777644
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-14 Score=138.39 Aligned_cols=100 Identities=16% Similarity=0.204 Sum_probs=80.2
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCC------------------------CCCceeeec
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVP------------------------RPPLVIKGD 157 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~------------------------~~~~~~~aD 157 (258)
.+..+++...+.++.+|||||||+|..+..++. .|...|+|||+++ ....++++|
T Consensus 161 ~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 161 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 344455544677899999999999999988875 5665699999974 123478999
Q ss_pred CCCCCCCC--CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 158 FHAQPFDN--GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 158 a~~LPf~d--~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+.++||.+ ++||+|+++.+.+..+....++|++|+|||||++++.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred ccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEe
Confidence 99999976 5899999975445567788899999999999999986
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-14 Score=129.76 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=73.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------------CCceeeecCCCCC----CC--C
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------------PPLVIKGDFHAQP----FD--N 165 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------------~~~~~~aDa~~LP----f~--d 165 (258)
.++.+|||+|||+|..+..+++.+..+++|+|+++. ...++++|++.+| |+ +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 467899999999999999888765568999998742 1246889999887 74 4
Q ss_pred CCeeEEEec-ccccc----CChHHHHHHHHhcccCCcEEEEEecc
Q 025071 166 GTFDFEFSN-VFDHA----LYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 166 ~SFD~V~s~-~l~h~----~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
++||+|+++ +++|+ .++..+++++.|+|||||.+++.++.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 599999995 77776 34568999999999999999998663
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.9e-14 Score=117.25 Aligned_cols=92 Identities=13% Similarity=0.106 Sum_probs=69.1
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCC-CCCCCeeEEEec-
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQP-FDNGTFDFEFSN- 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LP-f~d~SFD~V~s~- 174 (258)
.+.++.+|||+|||+|..+..|++.+ .+|+|+|+++. ...+++++.+.++ +.+++||+|+++
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 45678999999999999999999875 58999999752 1235666776654 568899999985
Q ss_pred -cccc--------cCChHHHHHHHHhcccCCcEEEEEec
Q 025071 175 -VFDH--------ALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 -~l~h--------~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
.+.+ ..+...+++++.|+|||||++++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 2221 12345678999999999999988753
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-13 Score=113.84 Aligned_cols=108 Identities=15% Similarity=0.089 Sum_probs=83.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEecc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNV 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~ 175 (258)
.+.++.+|||+|||+|..+..+++.+ ..+|+|+|+++. ...++++|+.+.....++||+|+++.
T Consensus 37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~ 116 (204)
T 3e05_A 37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGG 116 (204)
T ss_dssp TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESC
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECC
Confidence 45678899999999999999998765 358999998742 13467788866555557899999963
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
..+ ++..+++++.|+|||||++++..... .+.+++.+++++.|+
T Consensus 117 ~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~-----------~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 117 SGG--MLEEIIDAVDRRLKSEGVIVLNAVTL-----------DTLTKAVEFLEDHGY 160 (204)
T ss_dssp CTT--CHHHHHHHHHHHCCTTCEEEEEECBH-----------HHHHHHHHHHHHTTC
T ss_pred CCc--CHHHHHHHHHHhcCCCeEEEEEeccc-----------ccHHHHHHHHHHCCC
Confidence 222 78899999999999999999975421 135778888888885
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.50 E-value=4e-14 Score=121.74 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=68.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------CCceeeecCCC----CCCCCCCeeEEEec
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------PPLVIKGDFHA----QPFDNGTFDFEFSN 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------~~~~~~aDa~~----LPf~d~SFD~V~s~ 174 (258)
+.++.+|||+|||+|..+..+++. |...|+|+|+++. ...++++|+.. .|+. ++||+|+++
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence 467889999999999999888864 3347999999853 12345678776 3665 899999997
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
..++ .+...+++|++|+|||||++++.+.
T Consensus 134 ~~~~-~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 134 IAQK-NQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp CCST-THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCh-hHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4332 2334458999999999999999864
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.4e-13 Score=119.54 Aligned_cols=143 Identities=12% Similarity=0.124 Sum_probs=99.8
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCC----------------CceeeecCCCCCCCCCC
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRP----------------PLVIKGDFHAQPFDNGT 167 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~----------------~~~~~aDa~~LPf~d~S 167 (258)
..+++...+.+ .+|||||||+|..+..+++. +..+++++|+ +.. ..++.+|+.+ |++ ++
T Consensus 158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~ 233 (334)
T 2ip2_A 158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SN 233 (334)
T ss_dssp HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SS
T ss_pred HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CC
Confidence 34444333455 89999999999999988764 3347999998 532 2467788876 666 68
Q ss_pred eeEEEec-cccccCChH--HHHHHHHhcccCCcEEEEEeccccCcCc------C-------CCCCCCChhHHHHHhhcCc
Q 025071 168 FDFEFSN-VFDHALYPW--KFVGEIERTLKPAGVCVLHVALSRRADK------Y-------SANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 168 FD~V~s~-~l~h~~~p~--~~l~Ei~RVLKPGG~lii~v~~~~~~~~------y-------~~~~~~s~~~l~~lf~~~~ 231 (258)
||+|++. +++|+.++. .++++++|+|||||++++.......... + .....++.+++.++++++|
T Consensus 234 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 313 (334)
T 2ip2_A 234 GDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGG 313 (334)
T ss_dssp CSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTT
T ss_pred CCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCC
Confidence 9999995 788887766 8899999999999999987432211000 0 1133468899999999999
Q ss_pred eEEeeeecCCCCeEEEEEEe
Q 025071 232 LVAVRKVDGFGLDTEVVFRK 251 (258)
Q Consensus 232 ~~~v~~v~g~~l~~~~~f~K 251 (258)
+..+......+....++.+|
T Consensus 314 f~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 314 FAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp EEEEEEEEETTTEEEEEEEE
T ss_pred CceeEEEECCCCCEEEEEEe
Confidence 87665443223335555554
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.7e-13 Score=121.62 Aligned_cols=90 Identities=17% Similarity=0.067 Sum_probs=71.4
Q ss_pred cCCCCCCEEEEECCCCCHHH-HHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGARVGQEV-AALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~-~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
..+.++.+|||||||+|..+ ..+++....+|+|+|+++. ...++++|+.++| +++||+|++.
T Consensus 118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~ 195 (298)
T 3fpf_A 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVA 195 (298)
T ss_dssp TTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEEC
T ss_pred cCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEEC
Confidence 45778999999999998765 4455532258999998742 2347889998876 7999999986
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++ ..++.++++|+.|+|||||++++...
T Consensus 196 a~--~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 196 AL--AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp TT--CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CC--ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 43 56888999999999999999998653
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.50 E-value=8.2e-14 Score=120.97 Aligned_cols=130 Identities=12% Similarity=-0.012 Sum_probs=92.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCCCCC---CCCeeEEEec
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQPFD---NGTFDFEFSN 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~---d~SFD~V~s~ 174 (258)
.++.+|||||||+|..+..++.. +..+|+|+|+++. ...++++|+++++++ +++||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 46789999999999999888853 3358999999751 234778899888875 7899999996
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE--EeeeecC---CCCeEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV--AVRKVDG---FGLDTEVVF 249 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~--~v~~v~g---~~l~~~~~f 249 (258)
.+ .++..+++++.|+|||||++++..... + .....++.+.+++.|+. .+..+.- .+-...+++
T Consensus 149 ~~---~~~~~~l~~~~~~LkpgG~l~~~~g~~-----~----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~ 216 (240)
T 1xdz_A 149 AV---ARLSVLSELCLPLVKKNGLFVALKAAS-----A----EEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVI 216 (240)
T ss_dssp CC---SCHHHHHHHHGGGEEEEEEEEEEECC------C----HHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEE
T ss_pred cc---CCHHHHHHHHHHhcCCCCEEEEEeCCC-----c----hHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEE
Confidence 53 567899999999999999998863210 0 01235567778888764 3333321 122357788
Q ss_pred EeCCcC
Q 025071 250 RKKKKK 255 (258)
Q Consensus 250 ~K~~~~ 255 (258)
+|.+.+
T Consensus 217 ~k~~~~ 222 (240)
T 1xdz_A 217 RKIKNT 222 (240)
T ss_dssp EECSCC
T ss_pred EecCCC
Confidence 886554
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.1e-13 Score=122.88 Aligned_cols=137 Identities=13% Similarity=0.081 Sum_probs=97.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC--------CCCceeeecCCCCCCCCCCeeEEEec-cccccCCh
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVP--------RPPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYP 182 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~--------~~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p 182 (258)
+.+..+|||||||+|..+..+++. +..+++++|+.. ....++.+|+.+ |++++ |+|++. +++|+.++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~ 277 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDE 277 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHH
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEechhhcCCHH
Confidence 456789999999999999998764 334799999721 123578889887 88765 999985 78888765
Q ss_pred H--HHHHHHHhcccCCcEEEEEeccccCc--Cc----------------CCCCCCCChhHHHHHhhcCceEEeeeecCCC
Q 025071 183 W--KFVGEIERTLKPAGVCVLHVALSRRA--DK----------------YSANDLFSVKPLVKLFRESELVAVRKVDGFG 242 (258)
Q Consensus 183 ~--~~l~Ei~RVLKPGG~lii~v~~~~~~--~~----------------y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~ 242 (258)
. +++++++|+|||||++++........ .. ......++.+++.++++++|+..+......+
T Consensus 278 ~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~ 357 (368)
T 3reo_A 278 HCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAF 357 (368)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEET
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCC
Confidence 4 67999999999999998874321110 00 0123446889999999999987776554334
Q ss_pred CeEEEEEEeC
Q 025071 243 LDTEVVFRKK 252 (258)
Q Consensus 243 l~~~~~f~K~ 252 (258)
....+.+.|+
T Consensus 358 ~~~vie~~k~ 367 (368)
T 3reo_A 358 NTYVMEFLKT 367 (368)
T ss_dssp TEEEEEEECC
T ss_pred CcEEEEEEeC
Confidence 4455666653
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=116.75 Aligned_cols=123 Identities=14% Similarity=0.153 Sum_probs=91.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec-cc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN-VF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l 176 (258)
+.++.+|||+|||+|..+..+++.|..+|+|+|+++. ...+.++|+.+ +.+++||+|+++ .+
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~fD~i~~~~~~ 135 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA--DVDGKFDLIVANILA 135 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTT--TCCSCEEEEEEESCH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccc--cCCCCceEEEECCcH
Confidence 4577899999999999999999887668999998642 13467777754 457899999996 44
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEe
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRK 251 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K 251 (258)
++ ...+++++.|+|||||++++...... +.+++.+++++.|+..+......+..+.+..+|
T Consensus 136 ~~---~~~~l~~~~~~L~~gG~l~~~~~~~~-----------~~~~~~~~~~~~Gf~~~~~~~~~~w~~~~~~~~ 196 (205)
T 3grz_A 136 EI---LLDLIPQLDSHLNEDGQVIFSGIDYL-----------QLPKIEQALAENSFQIDLKMRAGRWIGLAISRK 196 (205)
T ss_dssp HH---HHHHGGGSGGGEEEEEEEEEEEEEGG-----------GHHHHHHHHHHTTEEEEEEEEETTEEEEEEEEC
T ss_pred HH---HHHHHHHHHHhcCCCCEEEEEecCcc-----------cHHHHHHHHHHcCCceEEeeccCCEEEEEEecc
Confidence 44 36788999999999999988632210 368899999999987766554434434444444
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.6e-13 Score=121.07 Aligned_cols=146 Identities=13% Similarity=0.143 Sum_probs=103.3
Q ss_pred HHHHhcCCCC-CCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCCC-CCCCC
Q 025071 106 DLKQRHFLFN-ESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQP-FDNGT 167 (258)
Q Consensus 106 ~L~~~~~l~~-~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~LP-f~d~S 167 (258)
.+++.....+ +.+|||||||+|..+..+++. +..+++++|+... ...++.+|+.+.+ +.++.
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 248 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGA 248 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCC
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCC
Confidence 3444333445 789999999999999988764 3357999998320 1346788888776 24567
Q ss_pred eeEEEec-cccccCCh--HHHHHHHHhcccCCcEEEEEeccccCc---C------------cCCCCCCCChhHHHHHhhc
Q 025071 168 FDFEFSN-VFDHALYP--WKFVGEIERTLKPAGVCVLHVALSRRA---D------------KYSANDLFSVKPLVKLFRE 229 (258)
Q Consensus 168 FD~V~s~-~l~h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~~---~------------~y~~~~~~s~~~l~~lf~~ 229 (258)
||+|++. +++|+.++ ..++++++|+|||||++++........ . .......++.+++.+++++
T Consensus 249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 328 (352)
T 3mcz_A 249 ADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRD 328 (352)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHH
T ss_pred ccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHH
Confidence 9999995 78888765 688999999999999998874321110 0 0112345789999999999
Q ss_pred CceEEeeeecCCCCeEEEEEEeCC
Q 025071 230 SELVAVRKVDGFGLDTEVVFRKKK 253 (258)
Q Consensus 230 ~~~~~v~~v~g~~l~~~~~f~K~~ 253 (258)
+|+..+... .+..+.++-+|..
T Consensus 329 aGf~~~~~~--~g~~~l~~a~kp~ 350 (352)
T 3mcz_A 329 AGLAVGERS--IGRYTLLIGQRSS 350 (352)
T ss_dssp TTCEEEEEE--ETTEEEEEEECCC
T ss_pred CCCceeeec--cCceEEEEEecCC
Confidence 998877643 2345677777753
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-13 Score=122.95 Aligned_cols=143 Identities=15% Similarity=0.070 Sum_probs=101.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCC
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGT 167 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~S 167 (258)
+.+++.....++.+|||||||+|..+..+++.. ..+++|+|+ +. ...++.+|+.+.|+++.
T Consensus 180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~- 257 (359)
T 1x19_A 180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA- 257 (359)
T ss_dssp HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC-
T ss_pred HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC-
Confidence 344444345677899999999999999988752 347999998 42 13467899998888765
Q ss_pred eeEEEec-cccccCC--hHHHHHHHHhcccCCcEEEEEeccccCc--C--------------cCCCCCCCChhHHHHHhh
Q 025071 168 FDFEFSN-VFDHALY--PWKFVGEIERTLKPAGVCVLHVALSRRA--D--------------KYSANDLFSVKPLVKLFR 228 (258)
Q Consensus 168 FD~V~s~-~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v~~~~~~--~--------------~y~~~~~~s~~~l~~lf~ 228 (258)
|+|++. +++|+.+ ..++++++.|+|||||++++........ . ......+++.+++.++++
T Consensus 258 -D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~ 336 (359)
T 1x19_A 258 -DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILE 336 (359)
T ss_dssp -SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHH
T ss_pred -CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHH
Confidence 999985 7888876 6788999999999999998764321110 0 001122378999999999
Q ss_pred cCceEEeeeecCCCCeEEEEEEe
Q 025071 229 ESELVAVRKVDGFGLDTEVVFRK 251 (258)
Q Consensus 229 ~~~~~~v~~v~g~~l~~~~~f~K 251 (258)
++|+..+....-. ..+.++.+|
T Consensus 337 ~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 337 SLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp HHTCEEEEEEEET-TEEEEEEEC
T ss_pred HCCCceEEEEecC-CceEEEEeC
Confidence 9998655544311 345666665
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.4e-14 Score=128.18 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=74.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC---------------CCCceeeecCCCCCCCCCCeeEEEec---
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP---------------RPPLVIKGDFHAQPFDNGTFDFEFSN--- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~---------------~~~~~~~aDa~~LPf~d~SFD~V~s~--- 174 (258)
+.++.+|||||||+|..+..+++.|..+|+|+|+++ ....++++|++++++++++||+|+++
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 141 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG 141 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCch
Confidence 457789999999999999999888866899999974 12246889999999999999999985
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEE
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCV 200 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~li 200 (258)
.+.|..++..++.++.|+|||||+++
T Consensus 142 ~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 142 YFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 35555567789999999999999987
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=124.76 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=97.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
.+.++.+|||||||+|..+..+++.. ..+++|+|+ +. ...++.+|+.+ +++.+ ||+|++.
T Consensus 179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~ 255 (374)
T 1qzz_A 179 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVT-ADVVLLS 255 (374)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCC-EEEEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCC-CCEEEEe
Confidence 35567899999999999999888753 347999997 31 23467888765 44443 9999995
Q ss_pred -cccccCChH--HHHHHHHhcccCCcEEEEEec--cccCcC-------------cCCCCCCCChhHHHHHhhcCceEEee
Q 025071 175 -VFDHALYPW--KFVGEIERTLKPAGVCVLHVA--LSRRAD-------------KYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 175 -~l~h~~~p~--~~l~Ei~RVLKPGG~lii~v~--~~~~~~-------------~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+++|+.++. .+++++.|+|||||++++... ...... .......++.+++.++++++|+..+.
T Consensus 256 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~ 335 (374)
T 1qzz_A 256 FVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 335 (374)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence 788888775 789999999999999988654 211100 00123457899999999999986554
Q ss_pred e--ecCCCCe---EEEEEEeCC
Q 025071 237 K--VDGFGLD---TEVVFRKKK 253 (258)
Q Consensus 237 ~--v~g~~l~---~~~~f~K~~ 253 (258)
. +.+...+ ..++.+|.+
T Consensus 336 ~~~~~~~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 336 ERTSGSTTLPFDFSILEFTAVS 357 (374)
T ss_dssp EEEECCSSCSSCEEEEEEEECC
T ss_pred EEECCCCcccCCcEEEEEEECc
Confidence 3 3332211 567777754
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.8e-14 Score=129.10 Aligned_cols=88 Identities=18% Similarity=0.218 Sum_probs=75.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec----
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN---- 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~---- 174 (258)
.++.+|||||||+|..+..+++.|..+|+|+|+++. ...++++|++++|+++++||+|+++
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 144 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence 467899999999999999999888778999999840 1357899999999999999999995
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii 201 (258)
.+.+..++..+++++.|+|||||+++.
T Consensus 145 ~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 145 CLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 245556888999999999999999864
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=114.06 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=71.2
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhc-CC---------CcEEEEeCCCCC----Ccee-eecCCCCC--------CCCCC
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLV-GV---------SDSIGIDLVPRP----PLVI-KGDFHAQP--------FDNGT 167 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~-g~---------~~v~GvD~s~~~----~~~~-~aDa~~LP--------f~d~S 167 (258)
..+.++.+|||+|||+|..+..+++. |. .+|+|+|+++.. ..+. .+|+...+ +++++
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (196)
T 2nyu_A 18 QILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRR 97 (196)
T ss_dssp CCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHHSGGGC
T ss_pred CCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHhcCCCC
Confidence 45678899999999999999998875 53 579999998743 2456 77776654 45679
Q ss_pred eeEEEec-ccc----ccCCh-------HHHHHHHHhcccCCcEEEEEec
Q 025071 168 FDFEFSN-VFD----HALYP-------WKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 168 FD~V~s~-~l~----h~~~p-------~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
||+|+++ .++ |..++ ..+++++.|+|||||.+++.+.
T Consensus 98 fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 9999985 222 22333 4788999999999999998753
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.5e-14 Score=126.39 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=81.9
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCCc--------e---eeecCCCCC---CCCCCeeEEEec-ccccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPL--------V---IKGDFHAQP---FDNGTFDFEFSN-VFDHA 179 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~~--------~---~~aDa~~LP---f~d~SFD~V~s~-~l~h~ 179 (258)
++.+|||||||||.++..|++.|..+|+|+|+++.+.. + ...++..++ +++.+||+|+++ +|.+
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s- 163 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS- 163 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC-
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhh-
Confidence 56799999999999999998888778999999875431 1 123444444 344579999986 5543
Q ss_pred CChHHHHHHHHhcccCCcEEEEEeccc-cCcC-cC--------CCCCCCChhHHHHHhhcCceEE
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLHVALS-RRAD-KY--------SANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~v~~~-~~~~-~y--------~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
...++.|++|+|||||.+++++-.. .... .. ...+.+..+++.+++.+.|+.-
T Consensus 164 --l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v 226 (291)
T 3hp7_A 164 --LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSV 226 (291)
T ss_dssp --GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEE
T ss_pred --HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 4678999999999999998874321 1100 11 0112246688899999999763
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-13 Score=121.86 Aligned_cols=134 Identities=15% Similarity=0.075 Sum_probs=96.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-c
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
.+..+|||||||+|..+..+++. +..+++++|+ +. ...+..+|+. .|++. +||+|++. +
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 44679999999999999888764 3347999997 31 2346788886 46666 89999994 8
Q ss_pred ccccCCh--HHHHHHHHhcccCCcEEEEEeccccCcCc----------CCCCCCCChhHHHHHhhcCceEEeeeecCCCC
Q 025071 176 FDHALYP--WKFVGEIERTLKPAGVCVLHVALSRRADK----------YSANDLFSVKPLVKLFRESELVAVRKVDGFGL 243 (258)
Q Consensus 176 l~h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~~~~----------y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l 243 (258)
++|+.++ .+++++++|+|||||++++.......... ......++.+++.++++++|+..+....-.+
T Consensus 245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~- 323 (332)
T 3i53_A 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPISY- 323 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEECSS-
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEECCC-
Confidence 8888876 67899999999999999987542211100 0123457899999999999987766553223
Q ss_pred eEEEEEEe
Q 025071 244 DTEVVFRK 251 (258)
Q Consensus 244 ~~~~~f~K 251 (258)
...+..||
T Consensus 324 ~~vie~r~ 331 (332)
T 3i53_A 324 VSIVEMTA 331 (332)
T ss_dssp SEEEEEEE
T ss_pred cEEEEEee
Confidence 45555554
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.1e-14 Score=120.14 Aligned_cols=137 Identities=17% Similarity=0.172 Sum_probs=88.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC-------------CCceeeecCCC---CCCCCCCeeEEEe
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR-------------PPLVIKGDFHA---QPFDNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~-------------~~~~~~aDa~~---LPf~d~SFD~V~s 173 (258)
.+.++.+|||+|||+|..+..|++. | ..+|+|+|+++. ...+.++|+.+ +|+.+++||+|++
T Consensus 74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~ 153 (233)
T 2ipx_A 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFA 153 (233)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEE
Confidence 3567889999999999999998875 3 358999999742 23467888887 6777899999999
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEee--eecCCCCe-EEEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVR--KVDGFGLD-TEVVFR 250 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~--~v~g~~l~-~~~~f~ 250 (258)
+.. .......++.++.|+|||||++++.+.............++. ++ .+++.+.|+..+. .++.+.-+ -.++.+
T Consensus 154 ~~~-~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~-~~-~~~l~~~Gf~~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 154 DVA-QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFA-SE-VKKMQQENMKPQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp CCC-CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHH-HH-HHTTGGGTEEEEEEEECTTTSSSEEEEEEE
T ss_pred cCC-CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHH-HH-HHHHHHCCCceEEEEecCCccCCcEEEEEE
Confidence 532 111224457899999999999999754310000001111111 23 5888888876555 34444333 244544
Q ss_pred e
Q 025071 251 K 251 (258)
Q Consensus 251 K 251 (258)
+
T Consensus 231 ~ 231 (233)
T 2ipx_A 231 Y 231 (233)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.3e-13 Score=123.98 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=90.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCC--------CCCceeeecCCCCCCCCCCeeEEEec-cccccCCh
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVP--------RPPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYP 182 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~--------~~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p 182 (258)
+.++.+|||||||+|..+..+++.+ ...++++|+.. ....++.+|+.+ |+++ ||+|++. +++|+.++
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d~ 283 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSDE 283 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCHH
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEecccccCCHH
Confidence 5667899999999999999998754 34688899610 123467889887 7775 9999995 88999888
Q ss_pred H--HHHHHHHhcccCCcEEEEEeccccC--cCc---------------CCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 183 W--KFVGEIERTLKPAGVCVLHVALSRR--ADK---------------YSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 183 ~--~~l~Ei~RVLKPGG~lii~v~~~~~--~~~---------------y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
. .++++++|+|||||++++....... ... ......++.+++.++++++|+..+...
T Consensus 284 ~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 358 (372)
T 1fp1_D 284 KCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVA 358 (372)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEE
Confidence 7 8999999999999999887321111 000 011334688999999999997655543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=115.28 Aligned_cols=91 Identities=12% Similarity=0.071 Sum_probs=73.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCC--CCCCCeeEEEec-c
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQP--FDNGTFDFEFSN-V 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LP--f~d~SFD~V~s~-~ 175 (258)
.++.+|||+|||+|..+..+++.|..+|+|+|+++. ...++++|+.+++ +++++||+|+++ .
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 467899999999999998777777668999998742 2347788887765 558899999997 4
Q ss_pred cccc-CChHHHHHHHHh--cccCCcEEEEEec
Q 025071 176 FDHA-LYPWKFVGEIER--TLKPAGVCVLHVA 204 (258)
Q Consensus 176 l~h~-~~p~~~l~Ei~R--VLKPGG~lii~v~ 204 (258)
+++. .+...+++++.+ +|||||++++..+
T Consensus 123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 123 YNVDSADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred CCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 4443 467788999999 9999999999765
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=120.86 Aligned_cols=144 Identities=17% Similarity=0.146 Sum_probs=102.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCC
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGT 167 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~S 167 (258)
..+.+.....++.+|||||||+|..+..+++. +..+++++|+ +. ...++.+|+. .|+++ +
T Consensus 192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~ 268 (369)
T 3gwz_A 192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-G 268 (369)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-S
T ss_pred HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-C
Confidence 33444444566789999999999999988775 3347999997 31 2346788887 57776 8
Q ss_pred eeEEEec-cccccCChH--HHHHHHHhcccCCcEEEEEeccccCcC------------cCCCCCCCChhHHHHHhhcCce
Q 025071 168 FDFEFSN-VFDHALYPW--KFVGEIERTLKPAGVCVLHVALSRRAD------------KYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 168 FD~V~s~-~l~h~~~p~--~~l~Ei~RVLKPGG~lii~v~~~~~~~------------~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
||+|++. +++|+.++. +++++++|+|||||++++......... .......++.+++.++++++|+
T Consensus 269 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 348 (369)
T 3gwz_A 269 ADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGL 348 (369)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTE
T ss_pred ceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCC
Confidence 9999994 788887776 689999999999999998743221100 0012334789999999999998
Q ss_pred EEeeeec-CCCCeEEEEEEe
Q 025071 233 VAVRKVD-GFGLDTEVVFRK 251 (258)
Q Consensus 233 ~~v~~v~-g~~l~~~~~f~K 251 (258)
..+.... ..+....+..+|
T Consensus 349 ~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 349 RVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp EEEEEEECSSSSEEEEEEEE
T ss_pred eEEEEEECCCCCcEEEEEEe
Confidence 8777655 334445555544
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-13 Score=111.73 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=72.6
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------C---CceeeecCCCCCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------P---PLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~---~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
...++.+|||+|||+|..+..+++.+ .+++|+|+++. . ..+..+|+.+ ++++++||+|+++
T Consensus 49 ~~~~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~ 126 (194)
T 1dus_A 49 VVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITN 126 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEEC
T ss_pred ccCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEEC
Confidence 34577899999999999999988774 58999998641 1 4567788776 5668899999996
Q ss_pred -cccc-cCChHHHHHHHHhcccCCcEEEEEec
Q 025071 175 -VFDH-ALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 -~l~h-~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
.++| ..+...+++++.|+|||||.+++..+
T Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 127 PPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp CCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 4454 23567889999999999999999865
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-14 Score=133.01 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCC------CCHHHHHHHh-c-CCCcEEEEeCCCCC------CceeeecCCCCCCC---
Q 025071 102 RFFQDLKQRHFLFNESKALSIGAR------VGQEVAALKL-V-GVSDSIGIDLVPRP------PLVIKGDFHAQPFD--- 164 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcG------tG~~~~~L~~-~-g~~~v~GvD~s~~~------~~~~~aDa~~LPf~--- 164 (258)
.+|+.+++. ...++.+||||||| +|..+..+.+ . +..+|+|+|+++.. ..++++|+.++||.
T Consensus 204 ~~Ye~lL~~-l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l 282 (419)
T 3sso_A 204 PHYDRHFRD-YRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRI 282 (419)
T ss_dssp HHHHHHHGG-GTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHH
T ss_pred HHHHHHHHh-hcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhcCCCcEEEEecccccchhhhh
Confidence 344444432 23457899999999 6655555543 3 34589999998753 34789999999998
Q ss_pred ---CCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 165 ---NGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 165 ---d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+++||+|+++..++..++..+++|++|+|||||++++.
T Consensus 283 ~~~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 283 ARRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp HHHHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hcccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEE
Confidence 89999999976666667889999999999999999996
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=122.77 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=71.8
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------C---------Ccee--eecCCCCCCCCCC
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------P---------PLVI--KGDFHAQPFDNGT 167 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------~---------~~~~--~aDa~~LPf~d~S 167 (258)
++.+...+.++.+|||+|||+|.++..+++. ..|+|+|+++. + ..++ ++|+.++| +++
T Consensus 65 ~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~ 140 (265)
T 2oxt_A 65 WMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VER 140 (265)
T ss_dssp HHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCC
T ss_pred HHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCC
Confidence 3444455678889999999999999998877 48999998653 1 1346 78888876 789
Q ss_pred eeEEEeccccccCCh----H---HHHHHHHhcccCCc--EEEEEec
Q 025071 168 FDFEFSNVFDHALYP----W---KFVGEIERTLKPAG--VCVLHVA 204 (258)
Q Consensus 168 FD~V~s~~l~h~~~p----~---~~l~Ei~RVLKPGG--~lii~v~ 204 (258)
||+|+|+..++..++ . .+++++.|+||||| .+++.+.
T Consensus 141 fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 141 TDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 999999632333332 1 37899999999999 8888653
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=122.64 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=74.8
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC---------CceeeecCCCCCC-----CCCCeeEE
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP---------PLVIKGDFHAQPF-----DNGTFDFE 171 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~---------~~~~~aDa~~LPf-----~d~SFD~V 171 (258)
.+++...+.++.+|||||||+|..+..|++.|. +|+|+|+++.+ ...+.++...++. .+++||+|
T Consensus 36 ~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~V 114 (261)
T 3iv6_A 36 NDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFV 114 (261)
T ss_dssp HHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEE
T ss_pred HHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEE
Confidence 334444567789999999999999999998875 89999997531 1245666666655 26799999
Q ss_pred Eec-cccccC--ChHHHHHHHHhcccCCcEEEEEec
Q 025071 172 FSN-VFDHAL--YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 172 ~s~-~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+++ +++|+. +...+++++.|+| |||++++.+.
T Consensus 115 v~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 115 LNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred EEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 996 788775 3456899999999 9999999864
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=120.08 Aligned_cols=139 Identities=16% Similarity=0.135 Sum_probs=96.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
.+.++.+|||||||+|..+..+++.+ ...++++|+ +. ...++.+|+.+ ++++ .||+|++.
T Consensus 180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~ 256 (360)
T 1tw3_A 180 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILS 256 (360)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEE
T ss_pred CCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEc
Confidence 45667899999999999999888753 347899996 32 23467788765 4544 49999985
Q ss_pred -cccccCChH--HHHHHHHhcccCCcEEEEEecc-ccCcC--c-----------CCCCCCCChhHHHHHhhcCceEEeee
Q 025071 175 -VFDHALYPW--KFVGEIERTLKPAGVCVLHVAL-SRRAD--K-----------YSANDLFSVKPLVKLFRESELVAVRK 237 (258)
Q Consensus 175 -~l~h~~~p~--~~l~Ei~RVLKPGG~lii~v~~-~~~~~--~-----------y~~~~~~s~~~l~~lf~~~~~~~v~~ 237 (258)
+++|+.++. .+++++.|+|||||++++.... ..... . ......++.+++.++++++|+..+..
T Consensus 257 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (360)
T 1tw3_A 257 FVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEV 336 (360)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEE
Confidence 788887764 7899999999999999887543 11110 0 01234568999999999999865543
Q ss_pred --ecCC--CC-eEEEEEEeCC
Q 025071 238 --VDGF--GL-DTEVVFRKKK 253 (258)
Q Consensus 238 --v~g~--~l-~~~~~f~K~~ 253 (258)
+.+. +. ...++.+|++
T Consensus 337 ~~~~~~~~~~~~~~i~~~~~~ 357 (360)
T 1tw3_A 337 RQLPSPTIPYDLSLLVLAPAA 357 (360)
T ss_dssp EEEECSSSSCEEEEEEEEEC-
T ss_pred EeCCCCcccCccEEEEEEeCC
Confidence 3332 12 3567777754
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-13 Score=117.01 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=88.4
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCe
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTF 168 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SF 168 (258)
+++...+.++.+|||+|||+|..+..+++. | ..+|+|+|+++. ...+..+|+.+.|+++++|
T Consensus 88 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~ 167 (258)
T 2pwy_A 88 MVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAY 167 (258)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCE
T ss_pred HHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCc
Confidence 344445678899999999999999988876 4 358999998641 2346788999988999999
Q ss_pred eEEEeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEee
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
|+|+++ ..++..+++++.|+|||||++++..+... ...++.+.+++.|+..+.
T Consensus 168 D~v~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------~~~~~~~~l~~~gf~~~~ 220 (258)
T 2pwy_A 168 DGVALD----LMEPWKVLEKAALALKPDRFLVAYLPNIT-----------QVLELVRAAEAHPFRLER 220 (258)
T ss_dssp EEEEEE----SSCGGGGHHHHHHHEEEEEEEEEEESCHH-----------HHHHHHHHHTTTTEEEEE
T ss_pred CEEEEC----CcCHHHHHHHHHHhCCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCCceEE
Confidence 999983 45777899999999999999999875321 245667777777765443
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=123.54 Aligned_cols=95 Identities=12% Similarity=0.010 Sum_probs=71.9
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------C---------Ccee--eecCCCCCCCCC
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------P---------PLVI--KGDFHAQPFDNG 166 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------~---------~~~~--~aDa~~LPf~d~ 166 (258)
.++.+...+.++.+|||+|||+|..+..+++. ..|+|+|+++. + ..++ ++|+.++| ++
T Consensus 72 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~ 147 (276)
T 2wa2_A 72 AWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PF 147 (276)
T ss_dssp HHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CC
T ss_pred HHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CC
Confidence 34445555677889999999999999999887 48999998652 1 1356 78888877 78
Q ss_pred CeeEEEeccccccCChH-------HHHHHHHhcccCCc--EEEEEe
Q 025071 167 TFDFEFSNVFDHALYPW-------KFVGEIERTLKPAG--VCVLHV 203 (258)
Q Consensus 167 SFD~V~s~~l~h~~~p~-------~~l~Ei~RVLKPGG--~lii~v 203 (258)
+||+|+|+..++..++. .+++++.|+||||| .+++.+
T Consensus 148 ~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 148 QADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 99999996323332321 37899999999999 888854
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.1e-13 Score=121.49 Aligned_cols=134 Identities=11% Similarity=0.091 Sum_probs=95.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------CCceeeecCCCCCCCCCCeeEEEec-cccccCC
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALY 181 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~ 181 (258)
+.++.+|||||||+|..+..+++. +..+++|+|+ +. ...++.+|+.+ |+++ ||+|++. +++|+.+
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d 261 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTD 261 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTT-CCCC--CSEEEEESCGGGSCH
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccccC-CCCC--ccEEEeehhhccCCH
Confidence 456789999999999999998864 3347999997 31 13467888866 6663 9999995 8899988
Q ss_pred hH--HHHHHHHhcccC---CcEEEEEeccccCcCc----------C------CCCCCCChhHHHHHhhcCceEEeeeecC
Q 025071 182 PW--KFVGEIERTLKP---AGVCVLHVALSRRADK----------Y------SANDLFSVKPLVKLFRESELVAVRKVDG 240 (258)
Q Consensus 182 p~--~~l~Ei~RVLKP---GG~lii~v~~~~~~~~----------y------~~~~~~s~~~l~~lf~~~~~~~v~~v~g 240 (258)
+. +++++++|+||| ||++++.......... + .....++.+++.++++++|+..+.....
T Consensus 262 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 341 (352)
T 1fp2_A 262 KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPL 341 (352)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEec
Confidence 87 899999999999 9999887432211000 0 0123367899999999999866554433
Q ss_pred CCCeEEEEEE
Q 025071 241 FGLDTEVVFR 250 (258)
Q Consensus 241 ~~l~~~~~f~ 250 (258)
.+....+..+
T Consensus 342 ~~~~~vie~~ 351 (352)
T 1fp2_A 342 TGFLSLIEIY 351 (352)
T ss_dssp ETTEEEEEEE
T ss_pred CCCcEEEEEe
Confidence 3444444443
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.8e-13 Score=116.52 Aligned_cols=131 Identities=15% Similarity=0.102 Sum_probs=91.1
Q ss_pred CCC-CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCC--CCCCCeeEEE
Q 025071 112 FLF-NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQP--FDNGTFDFEF 172 (258)
Q Consensus 112 ~l~-~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LP--f~d~SFD~V~ 172 (258)
.+. ++.+|||+|||+|..+..+++.+...|+|+|+++. ...++++|+.+++ +++++||+|+
T Consensus 45 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 45 YLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred cCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 345 68899999999999999998876558999998642 1357788988876 6689999999
Q ss_pred ec-ccc-----ccCC---------------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc
Q 025071 173 SN-VFD-----HALY---------------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 173 s~-~l~-----h~~~---------------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~ 231 (258)
++ -+. +..+ ...+++++.|+|||||++++..+.. ...++...+++.+
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------~~~~~~~~l~~~~ 192 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE------------RLLDIIDIMRKYR 192 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT------------THHHHHHHHHHTT
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH------------HHHHHHHHHHHCC
Confidence 96 211 1212 2468899999999999999965421 3577888888776
Q ss_pred eE--Eeeeec-CCCCe---EEEEEEeCCc
Q 025071 232 LV--AVRKVD-GFGLD---TEVVFRKKKK 254 (258)
Q Consensus 232 ~~--~v~~v~-g~~l~---~~~~f~K~~~ 254 (258)
+. .+..+. ..+-+ ..+.++|.++
T Consensus 193 ~~~~~~~~v~~~~~~~~~~~l~~~~k~~~ 221 (259)
T 3lpm_A 193 LEPKRIQFVHPRSDREANTVLVEGIKDGK 221 (259)
T ss_dssp EEEEEEEEEESSTTSCCSEEEEEEEETCC
T ss_pred CceEEEEEeecCCCCCcEEEEEEEEeCCC
Confidence 53 444442 11222 3556666543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=109.80 Aligned_cols=122 Identities=16% Similarity=0.100 Sum_probs=86.5
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEeccccc
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h 178 (258)
++.+|||+|||+|..+..++.. +..+++|+|+++. ...+..+|+.+++ ++++||+|+++.+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc--
Confidence 4789999999999999988864 3458999998642 1346788888876 5689999998654
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEee--eec-CCCCeEEEEEEeC
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVR--KVD-GFGLDTEVVFRKK 252 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~--~v~-g~~l~~~~~f~K~ 252 (258)
.++..+++++.++|||||++++.... ...+++.+++.+...+.+. .+. ..+..+.++++|+
T Consensus 142 -~~~~~~l~~~~~~L~~gG~l~~~~~~------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 142 -ASLNDMVSWCHHLPGEQGRFYALKGQ------------MPEDEIALLPEEYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp -SSHHHHHHHHTTSEEEEEEEEEEESS------------CCHHHHHTSCTTEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred -CCHHHHHHHHHHhcCCCcEEEEEeCC------------CchHHHHHHhcCCceeeeeeeccCCCCCceEEEEEEec
Confidence 34678999999999999999987531 1346676766633333433 222 2334466777764
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-13 Score=126.02 Aligned_cols=90 Identities=18% Similarity=0.171 Sum_probs=74.1
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEeccc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNVF 176 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~l 176 (258)
...++.+|||||||+|..+..+++.|..+|+|+|+++. ...++++|+++++++ ++||+|+++.+
T Consensus 60 ~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~ 138 (376)
T 3r0q_C 60 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWM 138 (376)
T ss_dssp TTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCC
T ss_pred ccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcCh
Confidence 45678899999999999999999888778999999821 134788999999988 89999999643
Q ss_pred cc----cCChHHHHHHHHhcccCCcEEEEE
Q 025071 177 DH----ALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 177 ~h----~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.| ...+..+++++.|+|||||++++.
T Consensus 139 ~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 139 GYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp BTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred hhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 33 345788999999999999998764
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-14 Score=125.14 Aligned_cols=134 Identities=15% Similarity=0.179 Sum_probs=88.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC-------------CceeeecC---CCCCCCCCCeeEEEe
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP-------------PLVIKGDF---HAQPFDNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~-------------~~~~~aDa---~~LPf~d~SFD~V~s 173 (258)
.+++|.+|||+|||+|..+..+++. | ...|+|+|+++.+ ...+.+|+ +..|+.++++|+|++
T Consensus 74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~ 153 (233)
T 4df3_A 74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYA 153 (233)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEE
Confidence 4789999999999999999999874 4 2479999987421 12344544 456788899999998
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeee--ecCCCCeEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRK--VDGFGLDTEVV 248 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~--v~g~~l~~~~~ 248 (258)
. +.|..++..++.|+.|+|||||++++.+........-..... ..+..+.+++.|+.-+.. +.++.-+-.++
T Consensus 154 d-~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~--~~~ev~~L~~~GF~l~e~i~L~pf~~~H~lv 227 (233)
T 4df3_A 154 D-VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEV--YKREIKTLMDGGLEIKDVVHLDPFDRDHAMI 227 (233)
T ss_dssp C-CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHH--HHHHHHHHHHTTCCEEEEEECTTTSTTEEEE
T ss_pred e-ccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHH--HHHHHHHHHHCCCEEEEEEccCCCCCceEEE
Confidence 4 556667888999999999999999886421100000011111 234455566677654444 44554433333
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.2e-13 Score=111.00 Aligned_cols=134 Identities=9% Similarity=0.100 Sum_probs=88.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCC----------------CCceeeecCCCCC-CCCCCeeEEEe
Q 025071 113 LFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPR----------------PPLVIKGDFHAQP-FDNGTFDFEFS 173 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~----------------~~~~~~aDa~~LP-f~d~SFD~V~s 173 (258)
+.++.+|||+|||+|..+..+++. +..+|+|+|+++. ...++++|+.+++ +.+++||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 567889999999999999988775 3348999998742 1347888988887 77899999998
Q ss_pred c-cc-c-----cc---CChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcC---c--eEEeeee
Q 025071 174 N-VF-D-----HA---LYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRES---E--LVAVRKV 238 (258)
Q Consensus 174 ~-~l-~-----h~---~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~---~--~~~v~~v 238 (258)
+ .+ . +. .++..+++++.|+|||||++++....... ........+.+++... + ......+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~v~~~~~~ 173 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGD------TGFEEKEKVLEFLKGVDQKKFIVQRTDFI 173 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTT------TBSHHHHHHHHHHTTSCTTTEEEEEEEET
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCC------CcHHHHHHHHHHHHhCCCCcEEEEEEEec
Confidence 6 22 1 11 13457899999999999999887532100 0011234455665533 2 3344444
Q ss_pred cCCCCe-EEEEEEeC
Q 025071 239 DGFGLD-TEVVFRKK 252 (258)
Q Consensus 239 ~g~~l~-~~~~f~K~ 252 (258)
+....+ ..++-+|.
T Consensus 174 ~~~~~pp~~~~~~~~ 188 (197)
T 3eey_A 174 NQANCPPILVCIEKI 188 (197)
T ss_dssp TCCSCCCEEEEEEEC
T ss_pred cCccCCCeEEEEEEc
Confidence 543333 45555653
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.2e-13 Score=116.88 Aligned_cols=87 Identities=18% Similarity=0.189 Sum_probs=71.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEeccccccCCh
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSNVFDHALYP 182 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h~~~p 182 (258)
.++.+|||||||+|..+..+++. +..+|+|+|+++. ...+..+|++++|+++++||+|++....
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 46789999999999999998875 2348999999752 2357889999999999999999985221
Q ss_pred HHHHHHHHhcccCCcEEEEEeccc
Q 025071 183 WKFVGEIERTLKPAGVCVLHVALS 206 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v~~~ 206 (258)
.+++|+.|+|||||++++.++..
T Consensus 159 -~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 -CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp -CCHHHHHHHEEEEEEEEEEEECT
T ss_pred -hhHHHHHHhcCCCcEEEEEEcCH
Confidence 24799999999999999987643
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-12 Score=118.11 Aligned_cols=135 Identities=15% Similarity=0.140 Sum_probs=94.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC--------CCCceeeecCCCCCCCCCCeeEEEec-cccccCCh
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVP--------RPPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYP 182 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~--------~~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p 182 (258)
+.+..+|||||||+|..+..+++. +..+++++|+.. ....++.+|+.+ |++++ |+|++. +++|+.++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~ 275 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQ 275 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHH
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHH
Confidence 556789999999999999988764 334799999721 123578899887 88865 999985 78887654
Q ss_pred --HHHHHHHHhcccCCcEEEEEeccccCc--Cc----------------CCCCCCCChhHHHHHhhcCceEEeeeecCCC
Q 025071 183 --WKFVGEIERTLKPAGVCVLHVALSRRA--DK----------------YSANDLFSVKPLVKLFRESELVAVRKVDGFG 242 (258)
Q Consensus 183 --~~~l~Ei~RVLKPGG~lii~v~~~~~~--~~----------------y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~ 242 (258)
.+++++++|+|||||++++........ .. ......++.+++.++++++|+..+....-.+
T Consensus 276 ~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~ 355 (364)
T 3p9c_A 276 HCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYA 355 (364)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEEET
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEEcCC
Confidence 468999999999999998874321110 00 0123346889999999999987666543223
Q ss_pred CeEEEEEE
Q 025071 243 LDTEVVFR 250 (258)
Q Consensus 243 l~~~~~f~ 250 (258)
....+.+.
T Consensus 356 ~~~vie~~ 363 (364)
T 3p9c_A 356 NAWAIEFT 363 (364)
T ss_dssp TEEEEEEE
T ss_pred ceEEEEEe
Confidence 33344443
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-13 Score=113.13 Aligned_cols=92 Identities=18% Similarity=0.145 Sum_probs=74.6
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEE
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFE 171 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V 171 (258)
+.+.....++.+|||+|||+|..+..+++.+ .+|+|+|+++. ...+..+|+.+.+.++++||+|
T Consensus 69 ~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 147 (210)
T 3lbf_A 69 MTELLELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAI 147 (210)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEE
T ss_pred HHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEE
Confidence 3333345678999999999999999998875 58999998641 1347788998888888999999
Q ss_pred Eec-cccccCChHHHHHHHHhcccCCcEEEEEecc
Q 025071 172 FSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 172 ~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
+++ +++|+.+ ++.++|||||++++.++.
T Consensus 148 ~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 148 IVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred EEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 996 7777763 789999999999998764
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=112.54 Aligned_cols=115 Identities=16% Similarity=0.146 Sum_probs=81.7
Q ss_pred CCCCCCEEEEECCCCCHH--HHH-H--HhcCCCcEEEEeCCCCCCceeeecCCCCCC---CCCCeeEEEec-ccccc-CC
Q 025071 112 FLFNESKALSIGARVGQE--VAA-L--KLVGVSDSIGIDLVPRPPLVIKGDFHAQPF---DNGTFDFEFSN-VFDHA-LY 181 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~--~~~-L--~~~g~~~v~GvD~s~~~~~~~~aDa~~LPf---~d~SFD~V~s~-~l~h~-~~ 181 (258)
.+.++.+|||||||+... ... + ++.... ....+.++|++++|+ ++++||+|+++ +++|+ .+
T Consensus 9 g~~~g~~vL~~~~g~v~vD~s~~ml~~a~~~~~---------~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~ 79 (176)
T 2ld4_A 9 GISAGQFVAVVWDKSSPVEALKGLVDKLQALTG---------NEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLH 79 (176)
T ss_dssp TCCTTSEEEEEECTTSCHHHHHHHHHHHHHHTT---------TTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCC
T ss_pred CCCCCCEEEEecCCceeeeCCHHHHHHHHHhcc---------cCcEEEEechhcCccccCCCCCEeEEEECChhhhcccC
Confidence 367889999999997541 111 1 111010 124578899999998 89999999995 88998 89
Q ss_pred hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeee
Q 025071 182 PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRK 237 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~ 237 (258)
+..+++|++|+|||||++++..+..... ......++.+++.++++++|++.+..
T Consensus 80 ~~~~l~~~~r~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aGfi~~~~ 133 (176)
T 2ld4_A 80 SAEILAEIARILRPGGCLFLKEPVETAV--DNNSKVKTASKLCSALTLSGLVEVKE 133 (176)
T ss_dssp CHHHHHHHHHHEEEEEEEEEEEEEESSS--CSSSSSCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEccccccc--ccccccCCHHHHHHHHHHCCCcEeec
Confidence 9999999999999999999964432110 01112247889999999999855444
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-12 Score=131.77 Aligned_cols=90 Identities=16% Similarity=0.213 Sum_probs=76.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCC--CcEEEEeCCCC---------------------CCceeeecCCCCCCCCCCeeEE
Q 025071 115 NESKALSIGARVGQEVAALKLVGV--SDSIGIDLVPR---------------------PPLVIKGDFHAQPFDNGTFDFE 171 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~--~~v~GvD~s~~---------------------~~~~~~aDa~~LPf~d~SFD~V 171 (258)
++.+|||||||+|..+..|++.+. .+|+|+|+++. ...++++|+.++|+++++||+|
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 678999999999999999998762 58999998641 1247889999999999999999
Q ss_pred Eec-cccccCChH--HHHHHHHhcccCCcEEEEEecc
Q 025071 172 FSN-VFDHALYPW--KFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 172 ~s~-~l~h~~~p~--~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
++. +++|+.++. .+++|+.|+|||| .+++.++.
T Consensus 801 V~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 801 TCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 995 899998776 4889999999999 77777654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-13 Score=122.56 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=73.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec----
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN---- 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~---- 174 (258)
.++.+|||||||+|..+..+++.|..+|+|+|+++. ...++.+|++++++++++||+|+++
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence 367899999999999999998888668999999731 1246889999999999999999985
Q ss_pred cccccCChHHHHHHHHhcccCCcEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCV 200 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~li 200 (258)
.+.+...+..++.++.|+|||||+++
T Consensus 117 ~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 34455678889999999999999987
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=111.48 Aligned_cols=104 Identities=16% Similarity=0.029 Sum_probs=78.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEecc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSNV 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~~ 175 (258)
.+.++.+|||+|||+|..+..+++.+ .+|+|+|+++. ...++++|+.+.....++||+|+++.
T Consensus 52 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~ 130 (204)
T 3njr_A 52 APRRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGG 130 (204)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECS
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECC
Confidence 45678899999999999999998875 48999998642 23467888887433446899999853
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~ 231 (258)
..++. +++++.|+|||||++++..... .+..++.+++++.|
T Consensus 131 ---~~~~~-~l~~~~~~LkpgG~lv~~~~~~-----------~~~~~~~~~l~~~g 171 (204)
T 3njr_A 131 ---GGSQA-LYDRLWEWLAPGTRIVANAVTL-----------ESETLLTQLHARHG 171 (204)
T ss_dssp ---CCCHH-HHHHHHHHSCTTCEEEEEECSH-----------HHHHHHHHHHHHHC
T ss_pred ---cccHH-HHHHHHHhcCCCcEEEEEecCc-----------ccHHHHHHHHHhCC
Confidence 12566 8999999999999999875421 13566777777665
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.43 E-value=7e-13 Score=112.81 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=80.3
Q ss_pred CCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC---------------CCceeeecCCCCC--CCCCCeeEEEeccc
Q 025071 115 NESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR---------------PPLVIKGDFHAQP--FDNGTFDFEFSNVF 176 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~---------------~~~~~~aDa~~LP--f~d~SFD~V~s~~l 176 (258)
++.+|||||||+|..+..+++.. ..+++|+|+++. ...++++|+..++ +++++||+|+++.-
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 57799999999999999888753 358999998742 2347889999988 88999999998622
Q ss_pred cccC---------ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEE
Q 025071 177 DHAL---------YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 177 ~h~~---------~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
.++. ....+++++.|+|||||.+++..... . ..+.+.+.+.+.|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----~-------~~~~~~~~~~~~g~~~ 176 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR----G-------LFEYSLVSFSQYGMKL 176 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH----H-------HHHHHHHHHHHHTCEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH----H-------HHHHHHHHHHHCCCee
Confidence 2111 12578999999999999998865321 0 1256667777766543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.4e-13 Score=117.77 Aligned_cols=130 Identities=13% Similarity=0.048 Sum_probs=89.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCCCCC---CCCeeEEEec
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQPFD---NGTFDFEFSN 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~---d~SFD~V~s~ 174 (258)
.++.+|||||||+|..+..|+.. +..+|+|+|+++. ...++++|+++++.. +++||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 46789999999999999888864 4458999998742 135788899888864 4899999996
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE--EeeeecCCCC--e-EEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV--AVRKVDGFGL--D-TEVVF 249 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~--~v~~v~g~~l--~-~~~~f 249 (258)
++. +...+++++.|+|||||++++..... .. ....++...++..|+. ++..+.-.+. . ..+++
T Consensus 159 a~~---~~~~ll~~~~~~LkpgG~l~~~~g~~------~~---~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~ 226 (249)
T 3g89_A 159 AVA---PLCVLSELLLPFLEVGGAAVAMKGPR------VE---EELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVL 226 (249)
T ss_dssp SSC---CHHHHHHHHGGGEEEEEEEEEEECSC------CH---HHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEE
T ss_pred CcC---CHHHHHHHHHHHcCCCeEEEEEeCCC------cH---HHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEE
Confidence 543 45788899999999999988864311 00 0234455666666653 4444432222 2 47778
Q ss_pred EeCCcC
Q 025071 250 RKKKKK 255 (258)
Q Consensus 250 ~K~~~~ 255 (258)
+|..++
T Consensus 227 ~k~~~t 232 (249)
T 3g89_A 227 EKTAPT 232 (249)
T ss_dssp EECSCC
T ss_pred EeCCCC
Confidence 885544
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=111.80 Aligned_cols=135 Identities=19% Similarity=0.206 Sum_probs=84.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC-------------CCceeeecCCCCC---CCCCCeeEEEec
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR-------------PPLVIKGDFHAQP---FDNGTFDFEFSN 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~-------------~~~~~~aDa~~LP---f~d~SFD~V~s~ 174 (258)
+.++.+|||+|||+|..+..+++. | ...|+|+|+++. ...+.++|+...+ ..+++||+|+++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 557889999999999999998864 4 258999998751 2346788887632 124689999986
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeee--cCCCCe-EEEEEEe
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKV--DGFGLD-TEVVFRK 251 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v--~g~~l~-~~~~f~K 251 (258)
.. +...+..+++++.|+|||||++++.+.......... ...+..+++..+ .+. +..+... ..+.-+ -.++++|
T Consensus 151 ~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~~~l~~l-~~~-f~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 151 VA-QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKE-PEQVFREVEREL-SEY-FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp CC-STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSC-HHHHHHHHHHHH-HTT-SEEEEEEECTTTSSSEEEEEEEC
T ss_pred CC-CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCC-hhhhhHHHHHHH-Hhh-ceeeeEeccCcccCCCEEEEEEe
Confidence 33 222223458999999999999988753211100001 112234567776 444 5444433 333222 3667766
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-13 Score=109.59 Aligned_cols=105 Identities=16% Similarity=0.145 Sum_probs=79.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCC-CCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDN-GTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d-~SFD~V~s~ 174 (258)
.+.++.+|||+|||+|..+..+++.+ .+++|+|+++. ...+..+|+.+ ++++ ++||+|+++
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~ 107 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVG 107 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEES
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEEC
Confidence 45678899999999999999998877 68999998641 22356677665 4444 689999986
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
.++ +...+++++.++|||||.+++...... +..++.+++++.|+
T Consensus 108 ~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~~-----------~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 108 GSGG---ELQEILRIIKDKLKPGGRIIVTAILLE-----------TKFEAMECLRDLGF 152 (192)
T ss_dssp CCTT---CHHHHHHHHHHTEEEEEEEEEEECBHH-----------HHHHHHHHHHHTTC
T ss_pred CchH---HHHHHHHHHHHhcCCCcEEEEEecCcc-----------hHHHHHHHHHHCCC
Confidence 344 457889999999999999988754211 24667778887765
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-13 Score=114.09 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=73.4
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCeeEE
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFDFE 171 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD~V 171 (258)
+.+++...+.++.+|||||||+|..+..+++.+ .+|+|+|+++. ...+..+|+.+....+++||+|
T Consensus 60 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 138 (231)
T 1vbf_A 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRV 138 (231)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEE
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEE
Confidence 334443345678899999999999999998877 58999998642 2346778887743357899999
Q ss_pred Eec-cccccCChHHHHHHHHhcccCCcEEEEEecc
Q 025071 172 FSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 172 ~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
+++ .++|+. .++.|+|||||++++.++.
T Consensus 139 ~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 139 VVWATAPTLL------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EESSBBSSCC------HHHHHTEEEEEEEEEEECS
T ss_pred EECCcHHHHH------HHHHHHcCCCcEEEEEEcC
Confidence 996 677765 4899999999999998764
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.41 E-value=6.9e-13 Score=117.64 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=84.9
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEE
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEF 172 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~ 172 (258)
..+.++.+|||+|||+|..+..+++. +..+|+|+|+++. ...+.++|+.+ ++++++||+|+
T Consensus 106 ~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi 184 (275)
T 1yb2_A 106 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVI 184 (275)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEE
T ss_pred cCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEE
Confidence 34567889999999999999988875 2358999998631 13467788877 78889999999
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEee
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+ |.+++..+++++.|+|||||++++..+... ..+++.+.+++.|+..+.
T Consensus 185 ~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-----------~~~~~~~~l~~~Gf~~~~ 233 (275)
T 1yb2_A 185 A----DIPDPWNHVQKIASMMKPGSVATFYLPNFD-----------QSEKTVLSLSASGMHHLE 233 (275)
T ss_dssp E----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH-----------HHHHHHHHSGGGTEEEEE
T ss_pred E----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCCeEEE
Confidence 8 456788899999999999999999765310 246677778777765443
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.8e-13 Score=107.90 Aligned_cols=105 Identities=11% Similarity=-0.012 Sum_probs=75.1
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------------C-CceeeecCC-CCCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR--------------P-PLVIKGDFH-AQPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~--------------~-~~~~~aDa~-~LPf~d~SFD~V~s~ 174 (258)
...++.+|||+|||+|..+..+++. +..+|+|+|+++. . ..++.+|+. .+|..+++||+|+++
T Consensus 22 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 101 (178)
T 3hm2_A 22 APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIG 101 (178)
T ss_dssp CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEEC
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEEC
Confidence 4567789999999999999998875 3458999998741 1 125566663 344444899999996
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~ 231 (258)
.++| ..+++++.|+|||||++++..... .+...+.+++++.+
T Consensus 102 ~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~-----------~~~~~~~~~~~~~~ 144 (178)
T 3hm2_A 102 GGLTA----PGVFAAAWKRLPVGGRLVANAVTV-----------ESEQMLWALRKQFG 144 (178)
T ss_dssp C-TTC----TTHHHHHHHTCCTTCEEEEEECSH-----------HHHHHHHHHHHHHC
T ss_pred CcccH----HHHHHHHHHhcCCCCEEEEEeecc-----------ccHHHHHHHHHHcC
Confidence 5555 568899999999999999875421 12355666666554
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=106.02 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=81.1
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEeccc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNVF 176 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~l 176 (258)
...++.+|||+|||+|..+..+++ +..+++|+|+++. ...+.++|+.+ ++++++||+|+++..
T Consensus 32 ~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~ 109 (183)
T 2yxd_A 32 NLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT 109 (183)
T ss_dssp CCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc
Confidence 355778999999999999999988 4468999998642 23467788877 888899999999643
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
.++..+++++.|+ |||.+++...... +..++.+++++.|+
T Consensus 110 ---~~~~~~l~~~~~~--~gG~l~~~~~~~~-----------~~~~~~~~l~~~g~ 149 (183)
T 2yxd_A 110 ---KNIEKIIEILDKK--KINHIVANTIVLE-----------NAAKIINEFESRGY 149 (183)
T ss_dssp ---SCHHHHHHHHHHT--TCCEEEEEESCHH-----------HHHHHHHHHHHTTC
T ss_pred ---ccHHHHHHHHhhC--CCCEEEEEecccc-----------cHHHHHHHHHHcCC
Confidence 5788999999999 9999999764211 25678888888873
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=114.08 Aligned_cols=125 Identities=15% Similarity=0.145 Sum_probs=90.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec---
Q 025071 114 FNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN--- 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~--- 174 (258)
.++.+|||+|||+|..+..+++ .+..+|+|+|+++. ...++++|+.+ ++++++||+|+++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~-~~~~~~fD~Iv~npPy 186 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPY 186 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhh-hcccCCccEEEECCCC
Confidence 4677999999999999998885 34458999998742 13467788766 4557899999996
Q ss_pred -----------ccccc------------CChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc
Q 025071 175 -----------VFDHA------------LYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 175 -----------~l~h~------------~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~ 231 (258)
+++|. .+...+++++.++|||||++++..+. ...+++.+++++.|
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~------------~~~~~~~~~l~~~G 254 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW------------QQGEAVRQAFILAG 254 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS------------SCHHHHHHHHHHTT
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc------------hHHHHHHHHHHHCC
Confidence 11121 12356789999999999999986431 24678999999888
Q ss_pred eEEeeee-cCCCCeEEEEEEe
Q 025071 232 LVAVRKV-DGFGLDTEVVFRK 251 (258)
Q Consensus 232 ~~~v~~v-~g~~l~~~~~f~K 251 (258)
+..+... +-.|.++.++.+|
T Consensus 255 f~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 255 YHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp CTTCCEEECTTSSEEEEEEEC
T ss_pred CcEEEEEecCCCCCcEEEEEE
Confidence 7544433 5667777666553
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=115.49 Aligned_cols=123 Identities=18% Similarity=0.288 Sum_probs=88.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------CceeeecCCCCCCCCCCeeEEEeccccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------PLVIKGDFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------~~~~~aDa~~LPf~d~SFD~V~s~~l~h 178 (258)
+.++.+|||+|||+|..+..+++.|. +|+|+|+++.. ..+..+|+.. ++++++||+|+++.+.|
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh-cCcCCCCCEEEECCcHH
Confidence 46788999999999999999988886 89999997531 2355666654 35678999999974333
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEe
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRK 251 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K 251 (258)
. ...+++++.|+|||||++++..... .+.+++.+++++.|+..+......+- ..++++|
T Consensus 196 ~--~~~~l~~~~~~LkpgG~lils~~~~-----------~~~~~v~~~l~~~Gf~~~~~~~~~~W-~~l~~~k 254 (254)
T 2nxc_A 196 L--HAALAPRYREALVPGGRALLTGILK-----------DRAPLVREAMAGAGFRPLEEAAEGEW-VLLAYGR 254 (254)
T ss_dssp H--HHHHHHHHHHHEEEEEEEEEEEEEG-----------GGHHHHHHHHHHTTCEEEEEEEETTE-EEEEEEC
T ss_pred H--HHHHHHHHHHHcCCCCEEEEEeecc-----------CCHHHHHHHHHHCCCEEEEEeccCCe-EEEEEEC
Confidence 2 3578899999999999999863211 13688999999888765444322222 3455554
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-13 Score=123.24 Aligned_cols=89 Identities=16% Similarity=0.145 Sum_probs=72.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC---------------CCCceeeecCCCCCCCCCCeeEEEec-cc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP---------------RPPLVIKGDFHAQPFDNGTFDFEFSN-VF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~---------------~~~~~~~aDa~~LPf~d~SFD~V~s~-~l 176 (258)
..++.+|||||||+|..+..+++.|..+|+|+|+++ ....++.+|+++++++ ++||+|++. .+
T Consensus 48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~ 126 (348)
T 2y1w_A 48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMG 126 (348)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCB
T ss_pred cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCch
Confidence 457789999999999999999888777899999974 1134678899998876 589999996 55
Q ss_pred cccCC--hHHHHHHHHhcccCCcEEEEE
Q 025071 177 DHALY--PWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 177 ~h~~~--p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+.. ....+.++.|+|||||++++.
T Consensus 127 ~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 127 YMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred hcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 66543 356788999999999999864
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=110.19 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=70.4
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC----CceeeecCCCCCCC-----------CCCeeEEEecc
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP----PLVIKGDFHAQPFD-----------NGTFDFEFSNV 175 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~----~~~~~aDa~~LPf~-----------d~SFD~V~s~~ 175 (258)
..+.++.+|||+|||+|..+..+++.+ ..|+|+|+++.. ..++++|+.+.+.. .++||+|+|+.
T Consensus 21 ~~~~~g~~VLDlG~G~G~~s~~la~~~-~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~ 99 (191)
T 3dou_A 21 RVVRKGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDA 99 (191)
T ss_dssp CCSCTTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECC
T ss_pred CCCCCCCEEEEEeecCCHHHHHHHHcC-CcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCC
Confidence 345788999999999999999998874 589999998742 35788999887632 14999999952
Q ss_pred -cc----ccCC-------hHHHHHHHHhcccCCcEEEEEec
Q 025071 176 -FD----HALY-------PWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 -l~----h~~~-------p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
.. +..+ ...+++++.|+|||||.+++.+.
T Consensus 100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 100 MAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 11 1111 24678999999999999998653
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.7e-13 Score=120.55 Aligned_cols=88 Identities=19% Similarity=0.175 Sum_probs=66.7
Q ss_pred CCCEEEEECCCCCH----HHHHHHhc-C----CCcEEEEeCCCC------------------------------------
Q 025071 115 NESKALSIGARVGQ----EVAALKLV-G----VSDSIGIDLVPR------------------------------------ 149 (258)
Q Consensus 115 ~~~~VLDIGcGtG~----~~~~L~~~-g----~~~v~GvD~s~~------------------------------------ 149 (258)
++.+|||+|||||. ++..|++. | ..+|+|+|+++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 44455553 3 137999998631
Q ss_pred ----------CCceeeecCCCCCCC-CCCeeEEEe-ccccccCCh--HHHHHHHHhcccCCcEEEEE
Q 025071 150 ----------PPLVIKGDFHAQPFD-NGTFDFEFS-NVFDHALYP--WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 150 ----------~~~~~~aDa~~LPf~-d~SFD~V~s-~~l~h~~~p--~~~l~Ei~RVLKPGG~lii~ 202 (258)
...+.++|..+.||+ +++||+|+| +++.|+.++ .+++++++++|||||++++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 012456777777776 689999999 578887655 57899999999999999884
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=113.53 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=86.7
Q ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC--------------C--CceeeecCCCCCCCCCCee
Q 025071 108 KQRHFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR--------------P--PLVIKGDFHAQPFDNGTFD 169 (258)
Q Consensus 108 ~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~--------------~--~~~~~aDa~~LPf~d~SFD 169 (258)
.....+.++.+|||+|||+|..+..+++. + ..+|+|+|+++. . ..+..+|+.+ ++++++||
T Consensus 86 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~D 164 (255)
T 3mb5_A 86 VAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE-GIEEENVD 164 (255)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG-CCCCCSEE
T ss_pred HHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh-ccCCCCcC
Confidence 33345678899999999999999998876 4 458999998741 1 3467788875 48889999
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc--eEEeeee
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE--LVAVRKV 238 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~--~~~v~~v 238 (258)
+|+++ ..++..+++++.|+|||||++++..+... ...++.+++++.| +..+..+
T Consensus 165 ~v~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------~~~~~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 165 HVILD----LPQPERVVEHAAKALKPGGFFVAYTPCSN-----------QVMRLHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp EEEEC----SSCGGGGHHHHHHHEEEEEEEEEEESSHH-----------HHHHHHHHHHHTGGGBSCCEEE
T ss_pred EEEEC----CCCHHHHHHHHHHHcCCCCEEEEEECCHH-----------HHHHHHHHHHHcCCCccccEEE
Confidence 99984 45778899999999999999998765321 2466777777777 6544443
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=123.15 Aligned_cols=109 Identities=20% Similarity=0.243 Sum_probs=84.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec-cccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDH 178 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h 178 (258)
.++.+|||+|||+|..+..+++.|. +|+|+|+++. ...++++|+.+.++++++||+|+++ .++|
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 3678999999999999999998875 8999998642 2457889999999888999999997 5555
Q ss_pred -----cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 179 -----ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 179 -----~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
..+...+++++.|+|||||.+++..... ..-...+.+.|.++..+
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~----------l~~~~~l~~~f~~v~~l 360 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF----------LKYEPLLEEKFGAFQTL 360 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT----------SCHHHHHHHHHSCCEEE
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC----------CChHHHHHHhhccEEEE
Confidence 3356788999999999999999976421 10134566777766554
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.6e-13 Score=115.39 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=76.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-C------------------CceeeecCCCCCCC-CCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-P------------------PLVIKGDFHAQPFD-NGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-~------------------~~~~~aDa~~LPf~-d~SFD~V~ 172 (258)
.++.+|||||||+|..+..|++. ....|+|+|+++. . ..++++|++.+|.. ++.+|.|.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 46789999999999999998853 3357999999831 1 13678899998743 25666666
Q ss_pred ec-cc----cc-cCChHHHHHHHHhcccCCcEEEEEeccccCcC--c--CCCCCCCCh-----hHHHHHhhcCceE
Q 025071 173 SN-VF----DH-ALYPWKFVGEIERTLKPAGVCVLHVALSRRAD--K--YSANDLFSV-----KPLVKLFRESELV 233 (258)
Q Consensus 173 s~-~l----~h-~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~--~--y~~~~~~s~-----~~l~~lf~~~~~~ 233 (258)
++ .. .| ..++..+++|++|+|||||++++......... . ......++. +++.+++.+.|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~ 178 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFR 178 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCC
Confidence 53 11 11 22446789999999999999988433221111 0 000011122 2488888888764
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.38 E-value=8.2e-13 Score=113.23 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=69.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCCC--CCCCCeeEEEeccc
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQP--FDNGTFDFEFSNVF 176 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~LP--f~d~SFD~V~s~~l 176 (258)
++.+|||||||+|..+..|++. +..+++|+|+++. ...++++|+..++ |++++||.|+++.-
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 5679999999999999999875 3358999998742 1346788998887 88999999987421
Q ss_pred cccC---------ChHHHHHHHHhcccCCcEEEEEec
Q 025071 177 DHAL---------YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 177 ~h~~---------~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+.+. ....+++++.|+|||||.+++.+.
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 1111 135789999999999999998763
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-13 Score=112.15 Aligned_cols=92 Identities=15% Similarity=0.099 Sum_probs=69.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCC-CCCCCCCeeEEEecc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHA-QPFDNGTFDFEFSNV 175 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~-LPf~d~SFD~V~s~~ 175 (258)
..++.+|||+|||+|..+..+++.|..+|+|+|+++. ...++.+|+.+ ++..+++||+|+++.
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 4567899999999999999888877668999998742 12466778776 566667899999963
Q ss_pred ccccCChHHHHHHHH--hcccCCcEEEEEec
Q 025071 176 FDHALYPWKFVGEIE--RTLKPAGVCVLHVA 204 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~--RVLKPGG~lii~v~ 204 (258)
..+.......++++. |+|||||++++...
T Consensus 109 ~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 109 PYAKETIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCcchHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 222233456677776 99999999999765
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.38 E-value=5e-13 Score=109.90 Aligned_cols=92 Identities=17% Similarity=0.032 Sum_probs=70.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCC----CCCCCCCeeEEEe
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHA----QPFDNGTFDFEFS 173 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~----LPf~d~SFD~V~s 173 (258)
.++.+|||+|||+|..+..+++.+..+|+|+|+++. ...++++|+.+ +|+++++||+|++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 467899999999999998887777668999998742 12467777765 3345789999999
Q ss_pred ccccccCChHHHHHHH--HhcccCCcEEEEEecc
Q 025071 174 NVFDHALYPWKFVGEI--ERTLKPAGVCVLHVAL 205 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei--~RVLKPGG~lii~v~~ 205 (258)
+...+.......++++ .|+|||||++++..+.
T Consensus 123 ~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 123 DPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp CCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 7333344567777888 9999999999987653
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-12 Score=112.18 Aligned_cols=136 Identities=15% Similarity=0.185 Sum_probs=84.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC-------------CCceeeecCCCCC---CCCCCeeEEEe
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR-------------PPLVIKGDFHAQP---FDNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~-------------~~~~~~aDa~~LP---f~d~SFD~V~s 173 (258)
.+.++.+|||+|||+|..+..+++. | ...|+|+|+++. ...++++|+...+ ...++||+|++
T Consensus 73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~ 152 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYV 152 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEe
Confidence 3678999999999999999888764 3 347999999863 1235678887543 12579999999
Q ss_pred ccccccCChHHHH-HHHHhcccCCcEEEEEecc-ccCcCcCCCCCCCChhHHHHHhhcCceEEeeeec--CCCCe-EEEE
Q 025071 174 NVFDHALYPWKFV-GEIERTLKPAGVCVLHVAL-SRRADKYSANDLFSVKPLVKLFRESELVAVRKVD--GFGLD-TEVV 248 (258)
Q Consensus 174 ~~l~h~~~p~~~l-~Ei~RVLKPGG~lii~v~~-~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~--g~~l~-~~~~ 248 (258)
+.- + ++....+ ..+.|+|||||++++.+.. +.. ........ .++..+.+++.|+.-+..++ .+.-+ -.++
T Consensus 153 d~a-~-~~~~~il~~~~~~~LkpGG~lvisik~~~~d-~t~~~~e~--~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~ 227 (232)
T 3id6_C 153 DIA-Q-PDQTDIAIYNAKFFLKVNGDMLLVIKARSID-VTKDPKEI--YKTEVEKLENSNFETIQIINLDPYDKDHAIVL 227 (232)
T ss_dssp CCC-C-TTHHHHHHHHHHHHEEEEEEEEEEEC--------CCSSSS--TTHHHHHHHHTTEEEEEEEECTTTCSSCEEEE
T ss_pred cCC-C-hhHHHHHHHHHHHhCCCCeEEEEEEccCCcc-cCCCHHHH--HHHHHHHHHHCCCEEEEEeccCCCcCceEEEE
Confidence 632 2 3444444 5666699999999987532 110 01111222 24555666667765555543 33333 4566
Q ss_pred EEeC
Q 025071 249 FRKK 252 (258)
Q Consensus 249 f~K~ 252 (258)
.+|+
T Consensus 228 ~~~~ 231 (232)
T 3id6_C 228 SKYK 231 (232)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 6654
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.6e-13 Score=115.93 Aligned_cols=114 Identities=13% Similarity=0.146 Sum_probs=74.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCCc--------ee----------e-ecCCCCCCCCCCeeEEEec
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPL--------VI----------K-GDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~~--------~~----------~-aDa~~LPf~d~SFD~V~s~ 174 (258)
..+.+|||||||||..+..|++.|..+|+|+|+++.... +. . +|....+|++.+||+++++
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~ 115 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS 115 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence 356799999999999999999888668999999875421 11 1 2222212344566665543
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEeccc-cCcC-cC--------CCCCCCChhHHHHHhhcCceEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVALS-RRAD-KY--------SANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~-~~~~-~y--------~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
...+++|++|+|||||.+++.+... .... .. ...+.++.+++.+++.+.|+..
T Consensus 116 -------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v 178 (232)
T 3opn_A 116 -------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSV 178 (232)
T ss_dssp -------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEE
T ss_pred -------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEE
Confidence 1567899999999999998875211 0000 00 0011236788999999999753
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.2e-12 Score=115.04 Aligned_cols=134 Identities=9% Similarity=0.034 Sum_probs=95.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCC--------CCCceeeecCCCCCCCCCCeeEEEec-cccccCChH
Q 025071 114 FNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVP--------RPPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPW 183 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~--------~~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~ 183 (258)
.++.+|||||||+|..+..+++.. ..+++++|++. ....++.+|+.+ |++ +||+|++. +++|+.++.
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~ 268 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQ 268 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHH
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCHHH
Confidence 456899999999999999988753 34799999731 113467888877 776 49999995 888898887
Q ss_pred --HHHHHHHhcccC---CcEEEEEeccccCcCc------C-----------CCCCCCChhHHHHHhhcCceEEeeeecCC
Q 025071 184 --KFVGEIERTLKP---AGVCVLHVALSRRADK------Y-----------SANDLFSVKPLVKLFRESELVAVRKVDGF 241 (258)
Q Consensus 184 --~~l~Ei~RVLKP---GG~lii~v~~~~~~~~------y-----------~~~~~~s~~~l~~lf~~~~~~~v~~v~g~ 241 (258)
+++++++|+||| ||++++.......... + .....++.+++.++++++|+..+......
T Consensus 269 ~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 348 (358)
T 1zg3_A 269 SLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPIS 348 (358)
T ss_dssp HHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEEET
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEecC
Confidence 899999999999 9999886432111000 0 11334688999999999998665544333
Q ss_pred CCeEEEEEE
Q 025071 242 GLDTEVVFR 250 (258)
Q Consensus 242 ~l~~~~~f~ 250 (258)
+....+..+
T Consensus 349 ~~~~vie~~ 357 (358)
T 1zg3_A 349 GFKSLIEVY 357 (358)
T ss_dssp TTEEEEEEE
T ss_pred CCcEEEEEe
Confidence 444444443
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=114.85 Aligned_cols=91 Identities=14% Similarity=0.171 Sum_probs=68.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------------CCceeeecCCC-CC--CCCCCe
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------------PPLVIKGDFHA-QP--FDNGTF 168 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------------~~~~~~aDa~~-LP--f~d~SF 168 (258)
.++.+|||||||+|..+..|++. +...++|+|+++. ...++++|+.. +| |++++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 45678999999999999999875 3457999998631 12468899987 78 899999
Q ss_pred eEEEeccccccC---------ChHHHHHHHHhcccCCcEEEEEec
Q 025071 169 DFEFSNVFDHAL---------YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 169 D~V~s~~l~h~~---------~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|.|+++.-+.+. ....+++++.|+|||||.+++.+.
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 999874211110 013688999999999999998754
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-13 Score=115.57 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=68.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC---------------CCceeeecCCCC-C--CCCCCeeEEEecc
Q 025071 115 NESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR---------------PPLVIKGDFHAQ-P--FDNGTFDFEFSNV 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~---------------~~~~~~aDa~~L-P--f~d~SFD~V~s~~ 175 (258)
++.+|||||||+|..+..+++.. ...|+|+|+++. ...++++|+.++ | +++++||.|+++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 56799999999999999998753 347999998742 124678888874 4 8899999999852
Q ss_pred ccccC---C------hHHHHHHHHhcccCCcEEEEEec
Q 025071 176 FDHAL---Y------PWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 l~h~~---~------p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
-..+. . ...++++++|+|||||.+++.+.
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 11111 1 12589999999999999998764
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-14 Score=124.27 Aligned_cols=122 Identities=17% Similarity=0.163 Sum_probs=89.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-ccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~ 177 (258)
++.+|||+|||+|..+..+++.| .+|+|+|+++. ...++++|+.+++ ++++||+|+++ .++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence 67899999999999999999887 58999999742 2347888988887 67899999996 677
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEeccc-cCcCcCCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHVALS-RRADKYSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v~~~-~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
|..++...+.+++|+|||||.+++..... .....+......+.+++..++...|...+...
T Consensus 156 ~~~~~~~~~~~~~~~L~pgG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~ 217 (241)
T 3gdh_A 156 GPDYATAETFDIRTMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQN 217 (241)
T ss_dssp SGGGGGSSSBCTTTSCSSCHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEEE
T ss_pred CcchhhhHHHHHHhhcCCcceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEEEeh
Confidence 77666667789999999999966542110 00001111223467888898887776665544
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.7e-13 Score=113.10 Aligned_cols=90 Identities=17% Similarity=0.032 Sum_probs=69.3
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------------CCceeeecCCCCCC--CCCC-eeEEEec
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------------PPLVIKGDFHAQPF--DNGT-FDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------------~~~~~~aDa~~LPf--~d~S-FD~V~s~ 174 (258)
++.+|||+|||+|..+..+.+.|...|+|+|+++. ...++++|+.+++. ++++ ||+|+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 56799999999999998877667668999998741 22467788776533 4788 9999996
Q ss_pred cccccCChHHHHHHH--HhcccCCcEEEEEec
Q 025071 175 VFDHALYPWKFVGEI--ERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei--~RVLKPGG~lii~v~ 204 (258)
...|..+...+++++ .|+|||||.+++...
T Consensus 133 ~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~ 164 (201)
T 2ift_A 133 PPFHFNLAEQAISLLCENNWLKPNALIYVETE 164 (201)
T ss_dssp CCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCCCccHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 333445667788899 789999999998764
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-12 Score=113.21 Aligned_cols=95 Identities=21% Similarity=0.340 Sum_probs=76.5
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC------------------CCceeeecCCCCCCCCC
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR------------------PPLVIKGDFHAQPFDNG 166 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~------------------~~~~~~aDa~~LPf~d~ 166 (258)
++....+.++.+|||+|||+|..+..+++. + ..+|+|+|+++. ...+..+|+.+++++++
T Consensus 91 i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~ 170 (280)
T 1i9g_A 91 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDG 170 (280)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTT
T ss_pred HHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCC
Confidence 333344678889999999999999988874 3 358999998631 12467789999999999
Q ss_pred CeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEecc
Q 025071 167 TFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 167 SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
+||+|+++ ..+|+.+++++.|+|||||++++.++.
T Consensus 171 ~~D~v~~~----~~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 171 SVDRAVLD----MLAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CEEEEEEE----SSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred ceeEEEEC----CcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 99999983 457788999999999999999998763
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-12 Score=111.60 Aligned_cols=108 Identities=13% Similarity=0.124 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCCHHHHHHHhc----C-CCcEEEEeCCCCC----------CceeeecCCCC---CCCCC-CeeEEEecc
Q 025071 115 NESKALSIGARVGQEVAALKLV----G-VSDSIGIDLVPRP----------PLVIKGDFHAQ---PFDNG-TFDFEFSNV 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~----g-~~~v~GvD~s~~~----------~~~~~aDa~~L---Pf~d~-SFD~V~s~~ 175 (258)
++.+|||||||+|..+..|++. + ..+|+|+|+++.. ..++++|+.++ |+.++ +||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 4679999999999999998875 2 3589999998643 24678999884 76554 899999853
Q ss_pred ccccCChHHHHHHHHh-cccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc
Q 025071 176 FDHALYPWKFVGEIER-TLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~R-VLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~ 231 (258)
. |. +...++.|+.| +|||||++++..... ...-++...+.+++++.+
T Consensus 161 ~-~~-~~~~~l~~~~r~~LkpGG~lv~~d~~~-------~~~~~~~~~~~~~l~~~~ 208 (236)
T 2bm8_A 161 A-HA-NTFNIMKWAVDHLLEEGDYFIIEDMIP-------YWYRYAPQLFSEYLGAFR 208 (236)
T ss_dssp S-CS-SHHHHHHHHHHHTCCTTCEEEECSCHH-------HHHHHCHHHHHHHHHTTT
T ss_pred c-hH-hHHHHHHHHHHhhCCCCCEEEEEeCcc-------cccccCHHHHHHHHHhCc
Confidence 3 43 67789999998 999999999852100 000123356778887763
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.5e-12 Score=112.26 Aligned_cols=117 Identities=13% Similarity=0.089 Sum_probs=84.0
Q ss_pred CCCEEEEECCCC---CHHHHHHHhc-CCCcEEEEeCCCC-------------CCceeeecCCCCC-----------CCCC
Q 025071 115 NESKALSIGARV---GQEVAALKLV-GVSDSIGIDLVPR-------------PPLVIKGDFHAQP-----------FDNG 166 (258)
Q Consensus 115 ~~~~VLDIGcGt---G~~~~~L~~~-g~~~v~GvD~s~~-------------~~~~~~aDa~~LP-----------f~d~ 166 (258)
...+|||||||+ |.....+.+. ...+|+|+|+++. ...++++|+.+.+ ++.+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 347999999999 9887666553 2358999998742 2346888886531 3335
Q ss_pred CeeEEEec-cccccCC--hHHHHHHHHhcccCCcEEEEEeccccCc-------CcC----CCCCCCChhHHHHHhhcCc
Q 025071 167 TFDFEFSN-VFDHALY--PWKFVGEIERTLKPAGVCVLHVALSRRA-------DKY----SANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 167 SFD~V~s~-~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v~~~~~~-------~~y----~~~~~~s~~~l~~lf~~~~ 231 (258)
+||+|+++ +++|+.+ +..+++|++|+|||||++++........ ..| .....++.+++.++|.+.+
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ei~~~l~G~~ 235 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGEGWARTPEEIERQFGDFE 235 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSCCCCBCHHHHHHTTTTCE
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCCCccCCHHHHHHHhCCCe
Confidence 89999985 7888886 7899999999999999999875432110 011 1234578999999996443
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-12 Score=110.26 Aligned_cols=90 Identities=9% Similarity=-0.042 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCC-CCCCCCCeeEEEeccccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHA-QPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~-LPf~d~SFD~V~s~~l~h 178 (258)
++.+|||+|||+|..+..+.+.|..+|+|+|+++. ...++++|+.+ +|+.+++||+|+++...|
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 56799999999999998877767668999998742 23467888776 677788999999963334
Q ss_pred cCChHHHHHHHHh--cccCCcEEEEEec
Q 025071 179 ALYPWKFVGEIER--TLKPAGVCVLHVA 204 (258)
Q Consensus 179 ~~~p~~~l~Ei~R--VLKPGG~lii~v~ 204 (258)
......+++++.+ +|||||++++...
T Consensus 134 ~~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 134 RGLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 5567788888865 6999999998764
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-12 Score=111.64 Aligned_cols=114 Identities=16% Similarity=0.225 Sum_probs=85.5
Q ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCee
Q 025071 108 KQRHFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFD 169 (258)
Q Consensus 108 ~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD 169 (258)
+....+.++.+|||+|||+|..+..+++. + ..+|+|+|+++. ...+..+|+.+. +++++||
T Consensus 105 ~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D 183 (277)
T 1o54_A 105 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVD 183 (277)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEE
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccC
Confidence 33345677889999999999999988875 4 358999998642 123567787776 7788999
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeee
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRK 237 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~ 237 (258)
+|+++ .+++..+++++.++|||||++++..+... ...++.+.+++.|+..+..
T Consensus 184 ~V~~~----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~-----------~~~~~~~~l~~~gf~~~~~ 236 (277)
T 1o54_A 184 ALFLD----VPDPWNYIDKCWEALKGGGRFATVCPTTN-----------QVQETLKKLQELPFIRIEV 236 (277)
T ss_dssp EEEEC----CSCGGGTHHHHHHHEEEEEEEEEEESSHH-----------HHHHHHHHHHHSSEEEEEE
T ss_pred EEEEC----CcCHHHHHHHHHHHcCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCCceeEE
Confidence 99984 45778899999999999999999875311 2356677777777765443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.7e-12 Score=106.53 Aligned_cols=92 Identities=21% Similarity=0.151 Sum_probs=69.3
Q ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHhcCC--CcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeE
Q 025071 108 KQRHFLFNESKALSIGARVGQEVAALKLVGV--SDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDF 170 (258)
Q Consensus 108 ~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~--~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~ 170 (258)
.+...+.++.+|||||||+|..+..+++.+. .+|+|+|+++. ...+..+|+......+++||+
T Consensus 70 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 149 (215)
T 2yxe_A 70 CELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDR 149 (215)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEE
T ss_pred HHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeE
Confidence 3333456788999999999999998887542 58999998742 124567777443223789999
Q ss_pred EEec-cccccCChHHHHHHHHhcccCCcEEEEEecc
Q 025071 171 EFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 171 V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
|+++ .++|+. +++.|+|||||++++.++.
T Consensus 150 v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 150 IYTTAAGPKIP------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp EEESSBBSSCC------HHHHHTEEEEEEEEEEESS
T ss_pred EEECCchHHHH------HHHHHHcCCCcEEEEEECC
Confidence 9996 677765 5899999999999998763
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.1e-12 Score=114.18 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=67.4
Q ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeC----CCC-----C--------Cceeee-cCCCCCCCCCCee
Q 025071 108 KQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDL----VPR-----P--------PLVIKG-DFHAQPFDNGTFD 169 (258)
Q Consensus 108 ~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~----s~~-----~--------~~~~~a-Da~~LPf~d~SFD 169 (258)
.+...+.++.+|||||||+|..+..+++. ..|+|+|+ ++. . ..++++ |+..+| +++||
T Consensus 75 ~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD 150 (305)
T 2p41_A 75 VERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCD 150 (305)
T ss_dssp HHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCS
T ss_pred HHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCC
Confidence 33445667889999999999999999887 37999998 321 0 124556 777665 67999
Q ss_pred EEEec-ccc---ccCChH---HHHHHHHhcccCCcEEEEEec
Q 025071 170 FEFSN-VFD---HALYPW---KFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 170 ~V~s~-~l~---h~~~p~---~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+|+|+ ++. +..+.. .++.++.|+|||||.+++.+.
T Consensus 151 ~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred EEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99996 322 222222 478999999999999888654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.7e-12 Score=113.71 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=83.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEeccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSNVF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~~l 176 (258)
+.++.+|||+|||+|..+..+++.|..+|+|+|+++. ...++++|+.+++. +++||+|+++..
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence 4578899999999999999999877557999998742 12378899999887 789999998622
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
.....+++++.|+|||||++++....... . ......+++.+.+++.|+
T Consensus 202 ---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~--~~~~~~~~i~~~~~~~G~ 249 (278)
T 2frn_A 202 ---VRTHEFIPKALSIAKDGAIIHYHNTVPEK---L--MPREPFETFKRITKEYGY 249 (278)
T ss_dssp ---SSGGGGHHHHHHHEEEEEEEEEEEEEEGG---G--TTTTTHHHHHHHHHHTTC
T ss_pred ---hhHHHHHHHHHHHCCCCeEEEEEEeeccc---c--ccccHHHHHHHHHHHcCC
Confidence 23457889999999999999887543210 0 011245778888888774
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-12 Score=127.64 Aligned_cols=89 Identities=20% Similarity=0.268 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCC--CCCCCCeeEEEec-c
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQ--PFDNGTFDFEFSN-V 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~L--Pf~d~SFD~V~s~-~ 175 (258)
..+.+|||||||+|.++..|++.|. +|+|||.++. ...+.+++++++ ++++++||+|+|. +
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 4567999999999999999999996 8999998742 124678888888 6788999999995 8
Q ss_pred ccccCChHHH--HHHHHhcccCCcEEEEEe
Q 025071 176 FDHALYPWKF--VGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 l~h~~~p~~~--l~Ei~RVLKPGG~lii~v 203 (258)
++|+.+|..+ +.++.+.|+++|..++..
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence 9999988643 467888899999766653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.8e-12 Score=115.93 Aligned_cols=90 Identities=21% Similarity=0.205 Sum_probs=67.4
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CC-CcEEEEeCCCC--------------------------CCceeeecCCCC--
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GV-SDSIGIDLVPR--------------------------PPLVIKGDFHAQ-- 161 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~-~~v~GvD~s~~--------------------------~~~~~~aDa~~L-- 161 (258)
.+.++.+|||+|||+|..+..+++. |. .+|+|+|+++. ...+..+|+.++
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~ 181 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 181 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence 4678899999999999999998875 53 58999998641 234678898887
Q ss_pred CCCCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEecc
Q 025071 162 PFDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 162 Pf~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
++++++||+|+++. .+|..+++++.|+|||||.+++..+.
T Consensus 182 ~~~~~~fD~V~~~~----~~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 182 DIKSLTFDAVALDM----LNPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ------EEEEEECS----SSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred ccCCCCeeEEEECC----CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 67888999999853 34556789999999999999987653
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.1e-12 Score=114.58 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=73.3
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCC--CcEEEEeCCCC---------------CCceeeecCCCCCCCCCCe
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLVGV--SDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTF 168 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~--~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SF 168 (258)
.+++...+.++.+|||||||+|..+..+++.+. .+|+|+|+++. ...+..+|+.+.+.++++|
T Consensus 66 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~f 145 (317)
T 1dl5_A 66 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPY 145 (317)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCe
Confidence 334433466889999999999999998887542 35999998742 1346788988876678899
Q ss_pred eEEEec-cccccCChHHHHHHHHhcccCCcEEEEEecc
Q 025071 169 DFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 169 D~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
|+|++. .++|+. +++.++|||||++++.+..
T Consensus 146 D~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 146 DVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp EEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred EEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence 999996 677765 6899999999999998653
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-11 Score=115.59 Aligned_cols=86 Identities=15% Similarity=0.116 Sum_probs=69.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec----c
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN----V 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~----~ 175 (258)
++++|||||||+|.++...++.|..+|+|||.++. ...++.+|++.+.++ +.||+|+|. .
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccc
Confidence 67899999999999998888889888999998741 124788999998887 679999995 3
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii 201 (258)
+.+-.....++....|.|||||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 44444567788889999999997653
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-11 Score=107.48 Aligned_cols=129 Identities=12% Similarity=0.059 Sum_probs=87.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC----------C---------CceeeecCCCC-------CCCC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR----------P---------PLVIKGDFHAQ-------PFDN 165 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~----------~---------~~~~~aDa~~L-------Pf~d 165 (258)
..++.+|||+|||+|..+..+++.. ...|+|+|+++. . ..++++|+.++ ++++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 3467799999999999999888764 358999998631 1 24678898887 4778
Q ss_pred CCeeEEEec-cccc------------------cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHH
Q 025071 166 GTFDFEFSN-VFDH------------------ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKL 226 (258)
Q Consensus 166 ~SFD~V~s~-~l~h------------------~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~l 226 (258)
++||+|+++ -+.. ......+++++.++|||||++++..+.. ...++.+.
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------~~~~~~~~ 181 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ------------SVAEIIAA 181 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG------------GHHHHHHH
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH------------HHHHHHHH
Confidence 999999997 1111 1235678999999999999999876531 24567777
Q ss_pred hhcC-ceEEeeeec-CCCCe---EEEEEEeCC
Q 025071 227 FRES-ELVAVRKVD-GFGLD---TEVVFRKKK 253 (258)
Q Consensus 227 f~~~-~~~~v~~v~-g~~l~---~~~~f~K~~ 253 (258)
+++. +.+.+..+. ..+-+ ..+.++|.+
T Consensus 182 l~~~~~~~~i~~v~~~~~~~~~~~lv~~~k~~ 213 (260)
T 2ozv_A 182 CGSRFGGLEITLIHPRPGEDAVRMLVTAIKGS 213 (260)
T ss_dssp HTTTEEEEEEEEEESSTTSCCCEEEEEEEETC
T ss_pred HHhcCCceEEEEEcCCCCCCceEEEEEEEeCC
Confidence 7653 233444332 21111 366777754
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-12 Score=111.37 Aligned_cols=88 Identities=19% Similarity=0.239 Sum_probs=69.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCC-CcEEEEeCCCC-----------------------CCceeeecCCC-CC--CCC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGV-SDSIGIDLVPR-----------------------PPLVIKGDFHA-QP--FDN 165 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~-----------------------~~~~~~aDa~~-LP--f~d 165 (258)
+.++.+|||||||+|..+..+++.+. ..|+|+|+++. ...++++|+.+ +| |++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34678999999999999999987653 47999998631 12467889886 77 889
Q ss_pred CCeeEEEeccccccCCh-------------HHHHHHHHhcccCCcEEEEEec
Q 025071 166 GTFDFEFSNVFDHALYP-------------WKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p-------------~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+++|.|+.. .++| ..+++++.|+|||||.+++.+.
T Consensus 127 ~~~d~v~~~----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 127 GQLSKMFFC----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp TCEEEEEEE----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred cccCEEEEE----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 999999863 1223 4789999999999999999754
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-11 Score=104.87 Aligned_cols=89 Identities=19% Similarity=0.336 Sum_probs=71.6
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
..+.++.+|||+|||+|..+..+++.+ .+++|+|+++. ...+..+|+.+..+++++||+|+++
T Consensus 87 ~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 165 (248)
T 2yvl_A 87 LNLNKEKRVLEFGTGSGALLAVLSEVA-GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD 165 (248)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC
T ss_pred cCCCCCCEEEEeCCCccHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC
Confidence 345678899999999999999888764 58999998641 1245677887754477899999984
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
..++..+++++.++|||||++++..+
T Consensus 166 ----~~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 166 ----VREPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp ----SSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred ----CcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 34677889999999999999999876
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.29 E-value=8.4e-13 Score=106.83 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=67.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCC-CCC---CCCCeeEEEeccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHA-QPF---DNGTFDFEFSNVF 176 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~-LPf---~d~SFD~V~s~~l 176 (258)
++.+|||+|||+|..+..+++.|. .|+|+|+++. ...+.++|+.+ ++. .+++||+|+++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 119 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence 678999999999999999998876 4999998742 23467777765 332 2358999999732
Q ss_pred cccCChHHHHHHHH--hcccCCcEEEEEecc
Q 025071 177 DHALYPWKFVGEIE--RTLKPAGVCVLHVAL 205 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~--RVLKPGG~lii~v~~ 205 (258)
.| .+....++++. |+|||||.+++..+.
T Consensus 120 ~~-~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 120 YA-MDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp TT-SCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred Cc-hhHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 23 45566777777 999999999987653
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-11 Score=109.74 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=80.2
Q ss_pred CCCCCCEEEEECC------CCCHHHHHHHhcC-CCcEEEEeCCCC--CCce-eeecCCCCCCCCCCeeEEEecccccc--
Q 025071 112 FLFNESKALSIGA------RVGQEVAALKLVG-VSDSIGIDLVPR--PPLV-IKGDFHAQPFDNGTFDFEFSNVFDHA-- 179 (258)
Q Consensus 112 ~l~~~~~VLDIGc------GtG~~~~~L~~~g-~~~v~GvD~s~~--~~~~-~~aDa~~LPf~d~SFD~V~s~~l~h~-- 179 (258)
.+.++.+|||+|| |+|. .......+ ...|+|+|+++. ...+ +++|+.+++++ ++||+|+|+...+.
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~v~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~~~~~g 137 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTA-NKWDLIISDMYDPRTK 137 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGCCCS-SCEEEEEECCCCCC--
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCCCCCCEEEEECccccCCcc-CcccEEEEcCCccccc
Confidence 4677889999999 4466 22222344 257999999875 2357 89999998876 68999999622111
Q ss_pred ----------CChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 180 ----------LYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 180 ----------~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
..-..+++++.|+|||||.+++.+... . ...++.+++++.|+..+..+
T Consensus 138 ~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~--------~---~~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 138 HVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH--------S---WNADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp -CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS--------S---CCHHHHHHHTTEEEEEEEEE
T ss_pred cccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc--------C---CHHHHHHHHHHcCCcEEEEE
Confidence 112368899999999999999865321 1 23578888888877665554
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=105.30 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=64.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCC-CCCCC-----CCeeE
Q 025071 115 NESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHA-QPFDN-----GTFDF 170 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~-LPf~d-----~SFD~ 170 (258)
++.+|||||||+|..+..+++. + ..+|+|+|+++. ...++++|+.+ +|..+ ++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 5689999999999999999873 2 358999998752 13467788644 44322 79999
Q ss_pred EEec-cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSN-VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|++. ..++..+...++.++ |+|||||++++.
T Consensus 138 V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~ 169 (221)
T 3u81_A 138 VFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLAD 169 (221)
T ss_dssp EEECSCGGGHHHHHHHHHHT-TCCCTTCEEEES
T ss_pred EEEcCCcccchHHHHHHHhc-cccCCCeEEEEe
Confidence 9996 355554455667777 999999999884
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.5e-12 Score=112.66 Aligned_cols=115 Identities=14% Similarity=0.180 Sum_probs=78.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeC-CCCC-------------------------CceeeecCCCC--CC-
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDL-VPRP-------------------------PLVIKGDFHAQ--PF- 163 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~-s~~~-------------------------~~~~~aDa~~L--Pf- 163 (258)
..++.+|||+|||+|..+..+++.|..+|+|+|+ ++.. ..+...|.... .+
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 3467899999999999999998887668999999 5421 11121111110 11
Q ss_pred ---CCCCeeEEEe-ccccccCChHHHHHHHHhccc---C--CcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc-eE
Q 025071 164 ---DNGTFDFEFS-NVFDHALYPWKFVGEIERTLK---P--AGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE-LV 233 (258)
Q Consensus 164 ---~d~SFD~V~s-~~l~h~~~p~~~l~Ei~RVLK---P--GG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~-~~ 233 (258)
++++||+|++ .++.|..+...+++++.++|| | ||++++.....+. .......++.+.+++.| +.
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~------~~~~~~~~~~~~l~~~G~f~ 230 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRP------HLAERDLAFFRLVNADGALI 230 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------------CTHHHHHHHHSTTEE
T ss_pred hhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeec------ccchhHHHHHHHHHhcCCEE
Confidence 4689999998 578888888999999999999 9 9998886543211 00112356677777777 54
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.28 E-value=8.1e-12 Score=119.30 Aligned_cols=97 Identities=19% Similarity=0.091 Sum_probs=70.7
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC------------------------CCceeeecCC
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR------------------------PPLVIKGDFH 159 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~------------------------~~~~~~aDa~ 159 (258)
..+++...+.++.+|||||||+|..+..+++. |...|+|+|+++. ...++++|..
T Consensus 232 ~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~ 311 (433)
T 1u2z_A 232 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 311 (433)
T ss_dssp HHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence 33444334567889999999999999998874 6567999998642 1123455544
Q ss_pred CC--CC--CCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 160 AQ--PF--DNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 160 ~L--Pf--~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.. +| .+++||+|+++ .+ +..++..+++|+.|+|||||++++.
T Consensus 312 ~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 312 VDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp TTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred ccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEe
Confidence 32 33 35799999986 44 4456777889999999999999886
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=108.25 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=65.5
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC----------------CceeeecCCCC-CCC-----CCCeeE
Q 025071 115 NESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP----------------PLVIKGDFHAQ-PFD-----NGTFDF 170 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~----------------~~~~~aDa~~L-Pf~-----d~SFD~ 170 (258)
++.+|||||||+|..+..|++. + ...|+|+|+++.. ..++++|+.+. +.. +++||+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 5679999999999999999873 2 3589999997632 23567777553 322 589999
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|++..- ..+...+++++.|+|||||++++.
T Consensus 140 V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 140 IFIDAD--KTNYLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp EEEESC--GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCC--hHHhHHHHHHHHHhcCCCeEEEEE
Confidence 998532 234567899999999999999985
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-10 Score=107.12 Aligned_cols=138 Identities=15% Similarity=0.089 Sum_probs=96.4
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC--------------CCCceeeecCCCCCCCCCCeeEEEec-c
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVP--------------RPPLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~--------------~~~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
.+....+|||||||+|..+..+++. +..+++..|... ....++.+|+.+.|.++ +|+|++. +
T Consensus 176 ~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~--~D~~~~~~v 253 (353)
T 4a6d_A 176 DLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPE--ADLYILARV 253 (353)
T ss_dssp CGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCC--CSEEEEESS
T ss_pred CcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCC--ceEEEeeee
Confidence 4456679999999999999988764 334677788511 12357788988767664 6999984 7
Q ss_pred ccccCChH--HHHHHHHhcccCCcEEEEEeccc---cCcCc-----------CCCCCCCChhHHHHHhhcCceEEeeeec
Q 025071 176 FDHALYPW--KFVGEIERTLKPAGVCVLHVALS---RRADK-----------YSANDLFSVKPLVKLFRESELVAVRKVD 239 (258)
Q Consensus 176 l~h~~~p~--~~l~Ei~RVLKPGG~lii~v~~~---~~~~~-----------y~~~~~~s~~~l~~lf~~~~~~~v~~v~ 239 (258)
++++.++. +.+++++++|+|||+++|.-... +.... .....-++.+++.++++++|+..++...
T Consensus 254 lh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~ 333 (353)
T 4a6d_A 254 LHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKK 333 (353)
T ss_dssp GGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 88887764 56899999999999998874321 11110 0112336889999999999998777554
Q ss_pred CCCCeEEEEEEe
Q 025071 240 GFGLDTEVVFRK 251 (258)
Q Consensus 240 g~~l~~~~~f~K 251 (258)
-.+....++-||
T Consensus 334 ~~~~~~~i~ArK 345 (353)
T 4a6d_A 334 TGAIYDAILARK 345 (353)
T ss_dssp CSSSCEEEEEEC
T ss_pred cCCceEEEEEEe
Confidence 333335566666
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=114.41 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=77.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCCC------------------CceeeecCCCCCCCCCCeeEEEec
Q 025071 114 FNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPRP------------------PLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~~------------------~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
.++.+|||+|||+|..+..+++.+ ..+|+|+|+++.. ..+..+|+.+ ++++++||+|+++
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~n 299 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCN 299 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEEC
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEEC
Confidence 345899999999999999998764 4589999987421 1247788877 7888999999997
Q ss_pred -cccccC---C--hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 175 -VFDHAL---Y--PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 175 -~l~h~~---~--p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
.+++.. + ...+++++.|+|||||++++..+.. ..| ...+.+.|.++..+
T Consensus 300 ppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~---~~~-------~~~l~~~fg~~~~~ 354 (375)
T 4dcm_A 300 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH---LDY-------FHKLKKIFGNCTTI 354 (375)
T ss_dssp CCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETT---SCH-------HHHHHHHHSCCEEE
T ss_pred CCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC---cCH-------HHHHHHhcCCEEEE
Confidence 554321 1 2367899999999999999975421 111 35566777755433
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=105.14 Aligned_cols=87 Identities=24% Similarity=0.312 Sum_probs=69.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CC-CcEEEEeCCCC--------------------CCceeeecCCCCCCCCCCeeE
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GV-SDSIGIDLVPR--------------------PPLVIKGDFHAQPFDNGTFDF 170 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~-~~v~GvD~s~~--------------------~~~~~~aDa~~LPf~d~SFD~ 170 (258)
+.++.+|||+|||+|..+..+++. |. .+|+|+|+++. ...+.++|+...+.++++||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 567889999999999999988865 42 48999998641 234677888877777889999
Q ss_pred EEec-cccccCChHHHHHHHHhcccCCcEEEEEecc
Q 025071 171 EFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 171 V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
|+++ .++|+. +++.|+|||||++++.+..
T Consensus 155 i~~~~~~~~~~------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVVP------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHHH------HHHHHhcCCCcEEEEEEec
Confidence 9986 555554 6899999999999998753
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=106.60 Aligned_cols=87 Identities=21% Similarity=0.217 Sum_probs=67.6
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCC-eeEEEec-
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGT-FDFEFSN- 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~S-FD~V~s~- 174 (258)
.+.++.+|||||||+|..+..+++.+..+|+|+|+++. ...+..+|+ ..++++++ ||+|+++
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~ 166 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTA 166 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECS
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECC
Confidence 45678899999999999999888753258999998642 124567776 56776655 9999995
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEecc
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
.++|+. .++.++|||||++++.++.
T Consensus 167 ~~~~~~------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 167 GAPKIP------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp BBSSCC------HHHHHTEEEEEEEEEEECS
T ss_pred cHHHHH------HHHHHhcCCCcEEEEEEec
Confidence 666665 4899999999999998763
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.3e-12 Score=113.94 Aligned_cols=116 Identities=22% Similarity=0.250 Sum_probs=81.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------------CCceeeecCCCCCC--CCCCeeEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------------PPLVIKGDFHAQPF--DNGTFDFE 171 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------------~~~~~~aDa~~LPf--~d~SFD~V 171 (258)
.++.+|||||||+|..+..+++. +..+|+++|+++. ...++.+|+.+.+. .+++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 56789999999999999999876 3468999998631 12467788877665 48899999
Q ss_pred Eecccccc-CCh----HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEee
Q 025071 172 FSNVFDHA-LYP----WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 172 ~s~~l~h~-~~p----~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+++...+. ... ..+++++.|+|||||++++..... + .+.....++.+.+++.|+..+.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~-----~--~~~~~~~~~~~~l~~~GF~~v~ 236 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI-----W--LDLELIEKMSRFIRETGFASVQ 236 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT-----T--TCHHHHHHHHHHHHHHTCSEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc-----c--cchHHHHHHHHHHHhCCCCcEE
Confidence 99643332 111 578999999999999999875321 0 1112456777888877764443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.9e-11 Score=107.50 Aligned_cols=100 Identities=18% Similarity=0.053 Sum_probs=75.7
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcC--CCcEEEEeCCCC---------------CCceeeecCCCCCCCCCC
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKLVG--VSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGT 167 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g--~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~S 167 (258)
+.++......++.+|||+|||+|..+..++..+ ...++|+|+++. ...+.++|+.++|.++++
T Consensus 193 ~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~ 272 (354)
T 3tma_A 193 QALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPE 272 (354)
T ss_dssp HHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCC
T ss_pred HHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCC
Confidence 334444445678899999999999998887743 357999998741 245789999999998889
Q ss_pred eeEEEec-cccccC--------ChHHHHHHHHhcccCCcEEEEEec
Q 025071 168 FDFEFSN-VFDHAL--------YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 168 FD~V~s~-~l~h~~--------~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
||+|+++ -+.... ....+++++.|+|||||.+++.++
T Consensus 273 ~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 273 VDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9999996 211111 125678999999999999999865
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.6e-12 Score=115.65 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=69.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCC-CcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec-ccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGV-SDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~ 177 (258)
.++.+|||+|||+|..+..+++.+. .+|+|+|+++. ...+..+|+.+ +.+++||+|+++ .++
T Consensus 195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~--~~~~~fD~Iv~~~~~~ 272 (343)
T 2pjd_A 195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFS--EVKGRFDMIISNPPFH 272 (343)
T ss_dssp TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT--TCCSCEEEEEECCCCC
T ss_pred CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccc--cccCCeeEEEECCCcc
Confidence 3567999999999999999987653 48999998642 12356677755 447899999997 555
Q ss_pred c-----cCChHHHHHHHHhcccCCcEEEEEec
Q 025071 178 H-----ALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 178 h-----~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+ ..+...+++++.|+|||||.+++..+
T Consensus 273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 3 23457889999999999999999764
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-11 Score=118.44 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC---------------CCCceeeecCCCCCCCCCC
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP---------------RPPLVIKGDFHAQPFDNGT 167 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~---------------~~~~~~~aDa~~LPf~d~S 167 (258)
+.+.+++.....++.+|||||||+|..+..+++.|..+|+|+|+++ ....++.+|+++++++ ++
T Consensus 146 ~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~ 224 (480)
T 3b3j_A 146 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQ 224 (480)
T ss_dssp HHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SC
T ss_pred HHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccC-CC
Confidence 3334444333346789999999999999999888766899999864 1234688999988876 58
Q ss_pred eeEEEecc-ccccCCh--HHHHHHHHhcccCCcEEEEE
Q 025071 168 FDFEFSNV-FDHALYP--WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 168 FD~V~s~~-l~h~~~p--~~~l~Ei~RVLKPGG~lii~ 202 (258)
||+|+++. ++|+.+. ...+.++.|+|||||++++.
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99999973 4555433 45677899999999998864
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-11 Score=103.34 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=69.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCC------CcEEEEeCCCC--------------------CCceeeecCCCCC---
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGV------SDSIGIDLVPR--------------------PPLVIKGDFHAQP--- 162 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~------~~v~GvD~s~~--------------------~~~~~~aDa~~LP--- 162 (258)
.+.++.+|||||||+|..+..+++... .+|+|+|+++. ...+..+|+.+.+
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 356788999999999999998887532 38999998641 2346778888766
Q ss_pred -CCCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEecc
Q 025071 163 -FDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 163 -f~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
+++++||+|+++ .++|+. +++.++|||||++++.++.
T Consensus 157 ~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASELP------EILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHHCCEEEEEECSBBSSCC------HHHHHHEEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHHH------HHHHHhcCCCcEEEEEEcc
Confidence 677899999996 566643 7899999999999998763
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=106.03 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=64.5
Q ss_pred CCCEEEEECCCCCHHHHHHHhc---CCCcEEEEeCCCC-----------C------------------------------
Q 025071 115 NESKALSIGARVGQEVAALKLV---GVSDSIGIDLVPR-----------P------------------------------ 150 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~---g~~~v~GvD~s~~-----------~------------------------------ 150 (258)
++.+|||+|||+|..+..+++. +..+|+|+|+++. .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999888765 2347999998741 1
Q ss_pred ---Cc-------------eeeecCCCCCC-----CCCCeeEEEec-ccccc---------CChHHHHHHHHhcccCCcEE
Q 025071 151 ---PL-------------VIKGDFHAQPF-----DNGTFDFEFSN-VFDHA---------LYPWKFVGEIERTLKPAGVC 199 (258)
Q Consensus 151 ---~~-------------~~~aDa~~LPf-----~d~SFD~V~s~-~l~h~---------~~p~~~l~Ei~RVLKPGG~l 199 (258)
.. +.++|+.+... .+++||+|+++ .+.+. .....+++++.|+|||||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 12 67788776321 45589999996 22222 12347889999999999999
Q ss_pred EEE
Q 025071 200 VLH 202 (258)
Q Consensus 200 ii~ 202 (258)
+++
T Consensus 211 ~~~ 213 (250)
T 1o9g_A 211 AVT 213 (250)
T ss_dssp EEE
T ss_pred EEe
Confidence 983
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-11 Score=105.62 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=65.8
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCC-CCCCC--CCeeEEEe
Q 025071 115 NESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHA-QPFDN--GTFDFEFS 173 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~-LPf~d--~SFD~V~s 173 (258)
++.+|||||||+|..+..+++. + ..+|+|+|+++. ...++++|+.+ +|..+ ++||+|++
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 5789999999999999999875 2 358999998642 13467788765 45433 49999998
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.. ...+...+++++.|+|||||++++.
T Consensus 143 d~--~~~~~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 143 DA--DKPNNPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp CS--CGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred CC--chHHHHHHHHHHHHhcCCCeEEEEe
Confidence 53 1234567899999999999998885
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-10 Score=97.47 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=60.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEec-cccccCC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALY 181 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~ 181 (258)
..++.+|||+|||+|..+..+++.|...|+|+|+++. ...++++|+.++| ++||+|+++ .++|...
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-----
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccC
Confidence 4467899999999999999998877667999999742 3457889998876 799999997 5666543
Q ss_pred --hHHHHHHHHhcc
Q 025071 182 --PWKFVGEIERTL 193 (258)
Q Consensus 182 --p~~~l~Ei~RVL 193 (258)
...+++++.|+|
T Consensus 126 ~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 126 HSDRAFIDKAFETS 139 (200)
T ss_dssp --CHHHHHHHHHHE
T ss_pred chhHHHHHHHHHhc
Confidence 346889999998
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-11 Score=105.52 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=67.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC----------------CCceeeecCCC-CC-CCCCCeeEEEecc
Q 025071 115 NESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR----------------PPLVIKGDFHA-QP-FDNGTFDFEFSNV 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~----------------~~~~~~aDa~~-LP-f~d~SFD~V~s~~ 175 (258)
++.+|||||||+|..+..+++.. ..+|+|+|+++. ...++++|+.+ +| ..+++||+|++..
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 67899999999999999998742 358999998641 23577888865 45 5578999999852
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
...+...+++++.|+|||||++++.
T Consensus 151 --~~~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 151 --AKAQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp --TSSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred --cHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 1334567899999999999999874
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.7e-11 Score=102.14 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=64.8
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCC-CCC-C----CCCeeE
Q 025071 115 NESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHA-QPF-D----NGTFDF 170 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~-LPf-~----d~SFD~ 170 (258)
++.+|||||||+|..+..+++. + ..+|+|+|+++. ...++++|+.+ +|. . .++||+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 5679999999999999999875 2 358999998742 13467777743 222 1 179999
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|++..- ..+...+++++.|+|||||++++.
T Consensus 144 v~~~~~--~~~~~~~l~~~~~~L~pgG~lv~~ 173 (225)
T 3tr6_A 144 IYIDAD--KANTDLYYEESLKLLREGGLIAVD 173 (225)
T ss_dssp EEECSC--GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCC--HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 997531 234677899999999999999885
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.9e-11 Score=105.80 Aligned_cols=119 Identities=19% Similarity=0.273 Sum_probs=82.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCe---eEEEec-
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTF---DFEFSN- 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SF---D~V~s~- 174 (258)
++.+|||+|||+|..+..++..+..+|+|+|+++. ...++++|+.+ +++ ++| |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~IvsnP 200 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSNP 200 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEECC
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEcC
Confidence 56799999999999999888764358999999742 13567888876 333 589 999996
Q ss_pred -ccc---cc-----CChH----------HHHHHHH-hcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEE
Q 025071 175 -VFD---HA-----LYPW----------KFVGEIE-RTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 175 -~l~---h~-----~~p~----------~~l~Ei~-RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
.+. ++ .+|. .+++++. ++|||||++++.++.. ..+++.++|++. .
T Consensus 201 Pyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~------------q~~~v~~~~~~~---~ 265 (284)
T 1nv8_A 201 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED------------QVEELKKIVSDT---V 265 (284)
T ss_dssp CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT------------CHHHHTTTSTTC---E
T ss_pred CCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch------------HHHHHHHHHHhC---C
Confidence 110 00 1232 6789999 9999999999865421 235666677655 2
Q ss_pred eeeecCCCCeEEEEEEe
Q 025071 235 VRKVDGFGLDTEVVFRK 251 (258)
Q Consensus 235 v~~v~g~~l~~~~~f~K 251 (258)
...|-.|.++.++.++
T Consensus 266 -~~~D~~g~~R~~~~~~ 281 (284)
T 1nv8_A 266 -FLKDSAGKYRFLLLNR 281 (284)
T ss_dssp -EEECTTSSEEEEEEEC
T ss_pred -eecccCCCceEEEEEE
Confidence 2235667777665554
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.8e-11 Score=102.26 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=67.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHh-cCC------CcEEEEeCCCC--------------------CCceeeecCCCCCCC
Q 025071 112 FLFNESKALSIGARVGQEVAALKL-VGV------SDSIGIDLVPR--------------------PPLVIKGDFHAQPFD 164 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~-~g~------~~v~GvD~s~~--------------------~~~~~~aDa~~LPf~ 164 (258)
.+.++.+|||||||+|..+..+++ .+. .+|+|+|+++. ...+..+|+.. +++
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~ 159 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYP 159 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCG
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCC
Confidence 356788999999999999988876 332 37999998642 22456778776 666
Q ss_pred C-CCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 165 N-GTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 165 d-~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+ ++||+|+++ .++|+. +++.++|||||++++.+.
T Consensus 160 ~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 160 PNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp GGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred cCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEe
Confidence 5 899999996 666654 789999999999999875
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.2e-11 Score=103.67 Aligned_cols=99 Identities=14% Similarity=0.070 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC-----------------CCceeeecCCCC-
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR-----------------PPLVIKGDFHAQ- 161 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~-----------------~~~~~~aDa~~L- 161 (258)
.++..+.......++.+|||||||+|..+..|++. + ..+|+++|+++. ...++++|+.++
T Consensus 43 ~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l 122 (221)
T 3dr5_A 43 QLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM 122 (221)
T ss_dssp HHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG
T ss_pred HHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH
Confidence 34444544333334459999999999999998873 2 358999998642 124567776553
Q ss_pred C-CCCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 162 P-FDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 162 P-f~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+ +++++||+|++..- ..+...+++++.|+|||||++++.
T Consensus 123 ~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 123 SRLANDSYQLVFGQVS--PMDLKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp GGSCTTCEEEEEECCC--TTTHHHHHHHHHHHEEEEEEEEET
T ss_pred HHhcCCCcCeEEEcCc--HHHHHHHHHHHHHHcCCCcEEEEe
Confidence 2 44789999998521 224567899999999999999983
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.2e-11 Score=102.02 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=65.8
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCC-CCCCCCCeeEEEecc
Q 025071 115 NESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHA-QPFDNGTFDFEFSNV 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~-LPf~d~SFD~V~s~~ 175 (258)
++.+|||||||+|..+..+++. + ..+|+|+|+++. ...++.+|+.+ +|..++ ||+|++..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 5679999999999999999875 2 358999998742 12367778765 366567 99999852
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
...+...+++++.|+|||||++++.
T Consensus 135 --~~~~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 135 --DVFNGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp --TTSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred --ChhhhHHHHHHHHHhcCCCeEEEEE
Confidence 2345678899999999999999874
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-09 Score=102.00 Aligned_cols=132 Identities=18% Similarity=0.194 Sum_probs=86.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCCCC------ceeeecCCCCCCCCCCeeEEEec--c--ccc---
Q 025071 114 FNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPRPP------LVIKGDFHAQPFDNGTFDFEFSN--V--FDH--- 178 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~~~------~~~~aDa~~LPf~d~SFD~V~s~--~--l~h--- 178 (258)
.++.+|||+|||+|..+..+++. +..+++|+|+++... .+.++|+...+. +++||+|++| . ..+
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~ 116 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEP-GEAFDLILGNPPYGIVGEASK 116 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCC-SSCEEEEEECCCCCCBSCTTT
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcCc-cCCCCEEEECcCccCcccccc
Confidence 35679999999999999888763 345899999986542 467888877653 5789999996 1 111
Q ss_pred ----cCCh-------------------HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEe
Q 025071 179 ----ALYP-------------------WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 179 ----~~~p-------------------~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v 235 (258)
+.+. ..+++++.++|||||++++.++.... . . -..+.+.+++.+.+...+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l----~-~--~~~~~lr~~l~~~~~~~i 189 (421)
T 2ih2_A 117 YPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWL----V-L--EDFALLREFLAREGKTSV 189 (421)
T ss_dssp CSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGG----T-C--GGGHHHHHHHHHHSEEEE
T ss_pred cccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHh----c-C--ccHHHHHHHHHhcCCeEE
Confidence 1111 14578999999999999998874210 0 1 124667777766655433
Q ss_pred eee----cCCCCeE-EEEEEeCC
Q 025071 236 RKV----DGFGLDT-EVVFRKKK 253 (258)
Q Consensus 236 ~~v----~g~~l~~-~~~f~K~~ 253 (258)
..+ .+-...+ .++++|.+
T Consensus 190 ~~l~~~F~~~~~~~~il~~~k~~ 212 (421)
T 2ih2_A 190 YYLGEVFPQKKVSAVVIRFQKSG 212 (421)
T ss_dssp EEEESCSTTCCCCEEEEEEESSS
T ss_pred EECCCCCCCCCccEEEEEEEeCC
Confidence 332 2223333 56677743
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-10 Score=103.95 Aligned_cols=115 Identities=15% Similarity=0.136 Sum_probs=77.7
Q ss_pred CEEEEECCCC--CHHHHHHHh--cCCCcEEEEeCCCC---------------CCceeeecCCCCC------CCCCCee--
Q 025071 117 SKALSIGARV--GQEVAALKL--VGVSDSIGIDLVPR---------------PPLVIKGDFHAQP------FDNGTFD-- 169 (258)
Q Consensus 117 ~~VLDIGcGt--G~~~~~L~~--~g~~~v~GvD~s~~---------------~~~~~~aDa~~LP------f~d~SFD-- 169 (258)
.+|||||||+ +.++..+++ .+..+|+|+|.++. ...++++|+.+++ ..+++||
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~ 159 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLT 159 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTT
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcC
Confidence 5899999997 333444332 23458999998641 1247889988763 2246676
Q ss_pred ---EEEec-cccccCC---hHHHHHHHHhcccCCcEEEEEeccccCc--------CcC----CCCCCCChhHHHHHhhcC
Q 025071 170 ---FEFSN-VFDHALY---PWKFVGEIERTLKPAGVCVLHVALSRRA--------DKY----SANDLFSVKPLVKLFRES 230 (258)
Q Consensus 170 ---~V~s~-~l~h~~~---p~~~l~Ei~RVLKPGG~lii~v~~~~~~--------~~y----~~~~~~s~~~l~~lf~~~ 230 (258)
.|+++ +|||+.+ |..+++++.++|+|||++++........ ..| ....+++.+++.++|...
T Consensus 160 ~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~p~~~rs~~ei~~~f~Gl 239 (277)
T 3giw_A 160 RPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNMPMRLRTHAEAEEFFEGL 239 (277)
T ss_dssp SCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTCCCCCCCHHHHHHTTTTS
T ss_pred CcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCCCCccCCHHHHHHHhCCC
Confidence 46664 7888887 5789999999999999999974332110 011 112457899999999755
Q ss_pred c
Q 025071 231 E 231 (258)
Q Consensus 231 ~ 231 (258)
+
T Consensus 240 e 240 (277)
T 3giw_A 240 E 240 (277)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.4e-11 Score=101.69 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=67.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCC-CCC--CCCeeEEEec
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQ-PFD--NGTFDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~L-Pf~--d~SFD~V~s~ 174 (258)
++.+|||+|||+|..+..+++. +..+|+|+|+++. ...+..+|+... |.. +++||+|+++
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 6779999999999999998875 2358999998641 134667787663 544 6899999985
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
... .+...+++++.++|||||++++.
T Consensus 134 ~~~--~~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 134 AAK--GQYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp GGG--SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCH--HHHHHHHHHHHHHcCCCeEEEEE
Confidence 322 26778999999999999999885
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=104.31 Aligned_cols=92 Identities=13% Similarity=0.043 Sum_probs=69.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
...++.+|||+|||+|..+..+++. +...|+|+|+++. ...++++|+..++..+++||.|+++
T Consensus 115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d 194 (315)
T 1ixk_A 115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD 194 (315)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEe
Confidence 3567889999999999999988864 2357999998742 2246778988887767899999984
Q ss_pred -------cccccCC------h----------HHHHHHHHhcccCCcEEEEEe
Q 025071 175 -------VFDHALY------P----------WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 -------~l~h~~~------p----------~~~l~Ei~RVLKPGG~lii~v 203 (258)
++.+.++ + ..+++++.|+|||||++++.+
T Consensus 195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st 246 (315)
T 1ixk_A 195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST 246 (315)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 2332211 1 478899999999999998854
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=98.98 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=63.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCCC-C-CC---CCCeeEE
Q 025071 115 NESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHAQ-P-FD---NGTFDFE 171 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~L-P-f~---d~SFD~V 171 (258)
++.+|||||||+|..+..+++. + ..+|+|+|+++. ...++++|+.+. | +. +++||+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 5789999999999999999875 2 248999998641 134677777542 2 11 2679999
Q ss_pred EeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 172 FSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 172 ~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
++... ......+++++.|+|||||++++.
T Consensus 138 ~~d~~--~~~~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 138 FIDAD--KQNNPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp EECSC--GGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred EEcCC--cHHHHHHHHHHHHhcCCCcEEEEe
Confidence 98532 223467889999999999988875
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-10 Score=104.68 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=69.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------------CCceeeecCCC-CCCCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------------PPLVIKGDFHA-QPFDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------------~~~~~~aDa~~-LPf~d~SFD~V~ 172 (258)
.++.+|||||||+|..+.++.+. +..+|+++|+++. ...++.+|+.+ ++..+++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 35689999999999999998876 5678999998631 12467778765 455578999999
Q ss_pred eccccccCC-----hHHHHHHHHhcccCCcEEEEEe
Q 025071 173 SNVFDHALY-----PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 173 s~~l~h~~~-----p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++...+... ...+++++.|+|||||++++..
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 974443221 2578999999999999999874
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=9.3e-11 Score=106.76 Aligned_cols=90 Identities=16% Similarity=0.225 Sum_probs=69.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------------------CCceeeecCCC-CCCCCCCeeEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR--------------------PPLVIKGDFHA-QPFDNGTFDFE 171 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~--------------------~~~~~~aDa~~-LPf~d~SFD~V 171 (258)
.++.+|||||||+|..+..+++. +..+|+++|+++. ...++.+|+.+ ++..+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 45689999999999999999876 4568999998631 12356777765 45567899999
Q ss_pred EeccccccC--C------hHHHHHHHHhcccCCcEEEEEe
Q 025071 172 FSNVFDHAL--Y------PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 172 ~s~~l~h~~--~------p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+++...|.. . ...+++++.|+|||||++++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 997544440 1 3678999999999999999874
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-10 Score=105.14 Aligned_cols=90 Identities=19% Similarity=0.117 Sum_probs=67.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------------CCceeeecCCC-CCCCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------------PPLVIKGDFHA-QPFDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------------~~~~~~aDa~~-LPf~d~SFD~V~ 172 (258)
.++.+|||||||+|..+..+++. +..+|+++|+++. ...++++|+.+ ++..+++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 35689999999999999999876 5568999998631 12356777654 455678999999
Q ss_pred eccccc-cC-----ChHHHHHHHHhcccCCcEEEEEe
Q 025071 173 SNVFDH-AL-----YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 173 s~~l~h-~~-----~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++..++ .. ....+++++.|+|||||++++..
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 864433 21 22678899999999999999974
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-10 Score=107.61 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=67.6
Q ss_pred CEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC---------------CCceeeecCCCC--CCCCCCeeEEEeccccc
Q 025071 117 SKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR---------------PPLVIKGDFHAQ--PFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~---------------~~~~~~aDa~~L--Pf~d~SFD~V~s~~l~h 178 (258)
.+|||||||+|..+.++++ .+..+|++||+++. ...++.+|+.+. .+++++||+|+++.+.+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 3999999999999999987 44348999998641 124677887654 35678999999975444
Q ss_pred cC-----ChHHHHHHHHhcccCCcEEEEEec
Q 025071 179 AL-----YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 179 ~~-----~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
.. ....++++++|+|||||++++...
T Consensus 171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 32 226789999999999999998764
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-10 Score=102.25 Aligned_cols=89 Identities=17% Similarity=0.095 Sum_probs=70.6
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEecc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNV 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~ 175 (258)
.+.++.+|||+|||+|..+..+++. +...|+|+|+++. ...++++|+.++|. +++||+|+++.
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~ 194 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGY 194 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECC
Confidence 3667889999999999999998876 3458999998742 12478899988855 77999999862
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
.. ....++.++.|+|||||++++...
T Consensus 195 p~---~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 195 VH---KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp CS---SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred cc---cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 21 456788999999999999988643
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=8e-10 Score=102.74 Aligned_cols=118 Identities=20% Similarity=0.214 Sum_probs=84.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCC-CcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGV-SDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
..++.+|||+|||+|..+..++..+. .+|+|+|+++. ...+.++|+.++|+++++||+|+++
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 56788999999999999999988763 37999998742 2357899999999999999999996
Q ss_pred cccc-------cCC-hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEe--eeecCCCCe
Q 025071 175 VFDH-------ALY-PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAV--RKVDGFGLD 244 (258)
Q Consensus 175 ~l~h-------~~~-p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v--~~v~g~~l~ 244 (258)
-+.. ..+ ...+++++.|+| ||.+++.++ +.+.+.+.+.+.|+... ..+..-+++
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------~~~~~~~~~~~~G~~~~~~~~~~nG~l~ 358 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------EKKAIEEAIAENGFEIIHHRVIGHGGLM 358 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------------CHHHHHHHHHHTTEEEEEEEEEEETTEE
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------------CHHHHHHHHHHcCCEEEEEEEEEcCCEE
Confidence 2211 111 145778999999 555555443 34667788888886543 344333665
Q ss_pred EE
Q 025071 245 TE 246 (258)
Q Consensus 245 ~~ 246 (258)
+.
T Consensus 359 ~~ 360 (373)
T 3tm4_A 359 VH 360 (373)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.08 E-value=8.1e-11 Score=105.69 Aligned_cols=93 Identities=19% Similarity=0.226 Sum_probs=65.8
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCC
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGT 167 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~S 167 (258)
.+.+++...+.++.+|||||||+|..+..|++.+. +|+|+|+++. ...++++|+.+++++ +
T Consensus 17 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~ 93 (285)
T 1zq9_A 17 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--F 93 (285)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--C
T ss_pred HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--h
Confidence 33444444456788999999999999999988764 8999998641 124688999988876 7
Q ss_pred eeEEEecc------------ccccCChHHHH----HHHH--hcccCCcEE
Q 025071 168 FDFEFSNV------------FDHALYPWKFV----GEIE--RTLKPAGVC 199 (258)
Q Consensus 168 FD~V~s~~------------l~h~~~p~~~l----~Ei~--RVLKPGG~l 199 (258)
||.|+++. ++|..++..++ +|+. |+|||||.+
T Consensus 94 fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~ 143 (285)
T 1zq9_A 94 FDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL 143 (285)
T ss_dssp CSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred hcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence 99999962 23332222111 4554 799999965
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-10 Score=100.48 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=69.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCC---------------CCceeeecCCCCCC----CCCCeeEE
Q 025071 113 LFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPR---------------PPLVIKGDFHAQPF----DNGTFDFE 171 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf----~d~SFD~V 171 (258)
..++.+|||+|||+|..+..+++. +...|+|+|+++. ...++++|+..++. .+++||.|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 467889999999999999888863 3358999998742 22467788877765 37899999
Q ss_pred Eecc-------cc------------ccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 172 FSNV-------FD------------HALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 172 ~s~~-------l~------------h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+++. +. .......+++++.++|||||++++.+
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st 211 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST 211 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 9851 11 11345778999999999999998865
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.3e-11 Score=103.94 Aligned_cols=100 Identities=9% Similarity=-0.040 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCC-------------C-ceeeecCCCCCCC
Q 025071 100 FSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRP-------------P-LVIKGDFHAQPFD 164 (258)
Q Consensus 100 ~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~-------------~-~~~~aDa~~LPf~ 164 (258)
+..+|..+.+ .+.++.+|||+|||+|..+..++.. +..+++|+|+++.. . .+..+|.... .+
T Consensus 36 ld~fY~~~~~--~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~ 112 (200)
T 3fzg_A 36 LNDFYTYVFG--NIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VY 112 (200)
T ss_dssp HHHHHHHHHH--HSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HT
T ss_pred HHHHHHHHHh--hcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CC
Confidence 3444444433 2466889999999999999988754 33489999997521 1 2444555443 46
Q ss_pred CCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 165 NGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 165 d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.++||+|++. .+||+.+.+.++.++.+.|||||.++-.
T Consensus 113 ~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 113 KGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp TSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEE
T ss_pred CCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEe
Confidence 6889999994 7888866666778999999999877553
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.5e-10 Score=104.34 Aligned_cols=91 Identities=20% Similarity=0.227 Sum_probs=68.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------------CCceeeecCCCC--CCCCCCeeE
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------------PPLVIKGDFHAQ--PFDNGTFDF 170 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------------~~~~~~aDa~~L--Pf~d~SFD~ 170 (258)
..++.+|||||||+|..+..+++. +..+|+++|+++. ...++++|+.+. .+++++||+
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 346789999999999999999875 3468999998641 124677787653 245789999
Q ss_pred EEeccccccC-----ChHHHHHHHHhcccCCcEEEEEe
Q 025071 171 EFSNVFDHAL-----YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 171 V~s~~l~h~~-----~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
|+++..++.. ....+++++.|+|||||++++..
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9996432211 13678999999999999999964
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.07 E-value=8.4e-12 Score=109.10 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=69.7
Q ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC-------------CceeeecCCCCCCCC-CCeeEEEe
Q 025071 108 KQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP-------------PLVIKGDFHAQPFDN-GTFDFEFS 173 (258)
Q Consensus 108 ~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~-------------~~~~~aDa~~LPf~d-~SFD~V~s 173 (258)
++...+.++.+|||+|||+|..+..|++.+ .+|+|+|+++.. ..++++|+.++|+++ ++| .|++
T Consensus 22 ~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~ 99 (245)
T 1yub_A 22 IKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVG 99 (245)
T ss_dssp HHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEE
T ss_pred HHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEE
Confidence 333345677899999999999999998877 589999987531 236789999999884 789 5665
Q ss_pred cc------------ccccCChHHHH----HHHHhcccCCcEEEEEec
Q 025071 174 NV------------FDHALYPWKFV----GEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 174 ~~------------l~h~~~p~~~l----~Ei~RVLKPGG~lii~v~ 204 (258)
+- +.|...+..++ +++.|+|||||.+++.+.
T Consensus 100 n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 100 NIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp ECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred eCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 41 23333444455 679999999998777543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-10 Score=105.83 Aligned_cols=91 Identities=20% Similarity=0.186 Sum_probs=68.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------------CCceeeecCCC-CCCCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------------PPLVIKGDFHA-QPFDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------------~~~~~~aDa~~-LPf~d~SFD~V~ 172 (258)
.++.+|||||||+|..+..+++. +..+|+++|+++. ...++++|+.+ ++..+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 45689999999999999999876 4568999998631 12356777654 344578999999
Q ss_pred eccccccC-----ChHHHHHHHHhcccCCcEEEEEec
Q 025071 173 SNVFDHAL-----YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 173 s~~l~h~~-----~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++..++.. ....+++++.|+|||||++++...
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 96433321 116789999999999999999753
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-10 Score=103.80 Aligned_cols=89 Identities=19% Similarity=0.179 Sum_probs=66.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------------------CCceeeecCCC-CCCCCCC
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------------------PPLVIKGDFHA-QPFDNGT 167 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------------------~~~~~~aDa~~-LPf~d~S 167 (258)
.++.+|||||||+|..+..+++.+..+|+++|+++. ...++.+|+.+ ++. +++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 456899999999999999998776668999998631 11355666643 233 689
Q ss_pred eeEEEeccccccCC-----hHHHHHHHHhcccCCcEEEEEe
Q 025071 168 FDFEFSNVFDHALY-----PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 168 FD~V~s~~l~h~~~-----p~~~l~Ei~RVLKPGG~lii~v 203 (258)
||+|+++..++... ...+++++.|+|||||++++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99999964433211 2568899999999999999874
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-10 Score=100.77 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=65.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCC-CCC------CCCCee
Q 025071 115 NESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHA-QPF------DNGTFD 169 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~-LPf------~d~SFD 169 (258)
++.+|||||||+|..+..+++. + ..+|+++|+++. ...++.+|+.+ +|. ++++||
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 5679999999999999988864 2 358999999752 12366777754 342 268999
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|++.+- ..+...+++++.|+|||||++++.
T Consensus 159 ~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 159 FIFVDAD--KDNYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp EEEECSC--STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred EEEEcCc--hHHHHHHHHHHHHhCCCCeEEEEe
Confidence 9998532 235678899999999999999875
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-10 Score=105.16 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=66.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC-------------------CCceeeecCCC-CCCCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR-------------------PPLVIKGDFHA-QPFDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~-------------------~~~~~~aDa~~-LPf~d~SFD~V~ 172 (258)
.++.+|||||||+|..+..+++.+ ..+|+++|+++. ...++.+|+.+ ++..+++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 467899999999999999998763 468999998631 12356777765 455678999999
Q ss_pred eccccccC-----ChHHHHHHHHhcccCCcEEEEEe
Q 025071 173 SNVFDHAL-----YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 173 s~~l~h~~-----~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++...+.. ....+++++.|+|||||++++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 96443322 12467899999999999999875
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.04 E-value=2e-09 Score=98.54 Aligned_cols=133 Identities=12% Similarity=0.084 Sum_probs=86.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCC------CcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEe
Q 025071 114 FNESKALSIGARVGQEVAALKLVGV------SDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFS 173 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~------~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s 173 (258)
.++.+|||+|||+|..+..+++... ..++|+|+++. ...+.++|+.. +..+++||+|++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVIS 207 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEE
Confidence 3567999999999999887765321 47999998742 23467788765 445689999999
Q ss_pred c-cccccCCh------------------HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEE
Q 025071 174 N-VFDHALYP------------------WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 174 ~-~l~h~~~p------------------~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
+ -+.++... ..+++++.+.|||||++++.++.. -+.. -...++.+++.+.+.+.
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~----~~~~---~~~~~ir~~l~~~~~~~ 280 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA----MFGT---SDFAKVDKFIKKNGHIE 280 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG----GGGS---TTHHHHHHHHHHHEEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch----hcCC---chHHHHHHHHHhCCeEE
Confidence 7 44343222 157899999999999999987632 1111 12477888887766543
Q ss_pred -eeee--c---CCCCe-EEEEEEeCCc
Q 025071 235 -VRKV--D---GFGLD-TEVVFRKKKK 254 (258)
Q Consensus 235 -v~~v--~---g~~l~-~~~~f~K~~~ 254 (258)
+..+ + +.+.. ..++++|+..
T Consensus 281 ~ii~lp~~~F~~~~~~~~i~vl~k~~~ 307 (344)
T 2f8l_A 281 GIIKLPETLFKSEQARKSILILEKADV 307 (344)
T ss_dssp EEEECCGGGSCC-CCCEEEEEEEECCT
T ss_pred EeeeCChhhccCCCCceEEEEEECCCC
Confidence 2222 1 22233 3667777543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.7e-10 Score=105.48 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=65.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------------CCceeeecCCC-CCCCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------------PPLVIKGDFHA-QPFDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------------~~~~~~aDa~~-LPf~d~SFD~V~ 172 (258)
.++.+|||||||+|..+..+++. +..+|+++|+++. ...++.+|+.+ ++..+++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 45689999999999999999875 3468999998631 12356677654 444678999999
Q ss_pred eccccccCCh-----HHHHHHHHhcccCCcEEEEEe
Q 025071 173 SNVFDHALYP-----WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 173 s~~l~h~~~p-----~~~l~Ei~RVLKPGG~lii~v 203 (258)
++..++...+ ..+++++.|+|||||++++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 9755443211 578899999999999999864
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4.5e-10 Score=100.07 Aligned_cols=82 Identities=12% Similarity=-0.021 Sum_probs=65.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
.++.+|||||||+|..+..+.+.+ .+|+++|+++. ...++.+|+.+.. ++||+|+++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 456899999999999999887767 78999998631 1235667877655 789999986
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
. .+|..+++++.|+|||||++++..
T Consensus 147 ~----~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 Q----EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp S----CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred C----CChHHHHHHHHHhcCCCcEEEEEc
Confidence 2 467778999999999999999864
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.1e-09 Score=88.32 Aligned_cols=104 Identities=17% Similarity=0.137 Sum_probs=73.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec-ccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~ 177 (258)
..++.+|||+|||+|..+..+++.|...|+|+|+++. ...++++|+.++| ++||+|+++ .++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCc
Confidence 3467899999999999999998887667999998742 2346788988875 589999997 333
Q ss_pred ccC--ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 178 HAL--YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 178 h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
+.. ....+++++.++| ||.+++.++... +.+.+.+.+.+.|+
T Consensus 124 ~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~~-----------~~~~~~~~l~~~g~ 167 (207)
T 1wy7_A 124 SQRKHADRPFLLKAFEIS--DVVYSIHLAKPE-----------VRRFIEKFSWEHGF 167 (207)
T ss_dssp SSSTTTTHHHHHHHHHHC--SEEEEEEECCHH-----------HHHHHHHHHHHTTE
T ss_pred cccCCchHHHHHHHHHhc--CcEEEEEeCCcC-----------CHHHHHHHHHHCCC
Confidence 322 2356789999999 665544432110 23556677777764
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.3e-10 Score=99.49 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=75.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCC---CCC---CCCeeEE
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQ---PFD---NGTFDFE 171 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~L---Pf~---d~SFD~V 171 (258)
++.+|||+|||+|..+..+++. +..+|+|+|+++. ...++++|+.+. +++ +++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 5679999999999988887754 2258999998742 135678887652 565 3799999
Q ss_pred Eec-cccccC--------------Ch-HHHHHHHHhcccCCcEEEEEecccc------CcCcC---CCCCCCChhHHHHH
Q 025071 172 FSN-VFDHAL--------------YP-WKFVGEIERTLKPAGVCVLHVALSR------RADKY---SANDLFSVKPLVKL 226 (258)
Q Consensus 172 ~s~-~l~h~~--------------~p-~~~l~Ei~RVLKPGG~lii~v~~~~------~~~~y---~~~~~~s~~~l~~l 226 (258)
+++ -+.+.. .| ...+.+++|+|||||.+.+...... ....+ ......+.+++.++
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 224 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEE 224 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHH
Confidence 997 222111 12 2346899999999997765421100 00111 11122345789999
Q ss_pred hhcCceEEeee
Q 025071 227 FRESELVAVRK 237 (258)
Q Consensus 227 f~~~~~~~v~~ 237 (258)
+++.|+..+..
T Consensus 225 l~~~Gf~~v~~ 235 (254)
T 2h00_A 225 LRIQGVPKVTY 235 (254)
T ss_dssp HHHTTCSEEEE
T ss_pred HHHcCCCceEE
Confidence 99999866553
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-10 Score=102.25 Aligned_cols=90 Identities=20% Similarity=0.152 Sum_probs=67.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC-------------------CCceeeecCCC-CCCCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR-------------------PPLVIKGDFHA-QPFDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~-------------------~~~~~~aDa~~-LPf~d~SFD~V~ 172 (258)
.++.+|||||||+|..+..+++.. ..+|+++|+++. ...++.+|+.+ ++..+++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 467899999999999999998763 468999998631 12356777654 333478999999
Q ss_pred eccccccCC-----hHHHHHHHHhcccCCcEEEEEe
Q 025071 173 SNVFDHALY-----PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 173 s~~l~h~~~-----p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++..++... ...+++++.|+|||||++++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 964333211 1578999999999999999874
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-10 Score=106.28 Aligned_cols=90 Identities=16% Similarity=0.090 Sum_probs=68.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------------CCceeeecCCCCCC----CCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------------PPLVIKGDFHAQPF----DNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------------~~~~~~aDa~~LPf----~d~SFD~V~ 172 (258)
.++.+|||+|||+|..+..+++.|. .|+|+|+++. ...++++|+.++.. .+++||+|+
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 3567999999999999999988886 8999998742 13467778765432 167999999
Q ss_pred ec--ccc---------ccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 173 SN--VFD---------HALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 173 s~--~l~---------h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++ .+. +..+...+++++.++|||||.+++...
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 95 111 222456788999999999999877654
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-10 Score=98.19 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=64.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCC-CC-------------
Q 025071 115 NESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHA-QP------------- 162 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~-LP------------- 162 (258)
++.+|||||||+|..+..+++. + ..+|+|+|+++. ...+..+|+.+ +|
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 5789999999999999998875 2 358999998642 12356666543 22
Q ss_pred -CCC--CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 163 -FDN--GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 163 -f~d--~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|++ ++||+|+++.- ..+...+++++.++|||||++++.
T Consensus 140 ~f~~~~~~fD~I~~~~~--~~~~~~~l~~~~~~L~pgG~lv~~ 180 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDAD--KENYPNYYPLILKLLKPGGLLIAD 180 (239)
T ss_dssp TTCCSTTCEEEEEECSC--GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCCCCcCEEEEeCC--HHHHHHHHHHHHHHcCCCeEEEEE
Confidence 444 89999998521 223457889999999999999986
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.7e-10 Score=97.65 Aligned_cols=86 Identities=19% Similarity=0.139 Sum_probs=65.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCC----CCCCCC--CCeeE
Q 025071 115 NESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFH----AQPFDN--GTFDF 170 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~----~LPf~d--~SFD~ 170 (258)
++.+|||||||+|..+..+++. + ..+++|+|+++. ...+..+|+. .+++++ ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 5679999999999999999874 2 248999998742 1235667753 345555 89999
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|++... ..+...+++++.|+|||||++++.
T Consensus 152 V~~d~~--~~~~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 152 IFIDAD--KRNYPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp EEECSC--GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEECCC--HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 998532 234567899999999999999885
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-09 Score=101.85 Aligned_cols=89 Identities=19% Similarity=0.161 Sum_probs=67.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCC-CcEEEEeCCCC---------------CCceeeecCCC-CCC-CCCCeeEEEecc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGV-SDSIGIDLVPR---------------PPLVIKGDFHA-QPF-DNGTFDFEFSNV 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~---------------~~~~~~aDa~~-LPf-~d~SFD~V~s~~ 175 (258)
.++.+|||+| |+|..+..++..+. .+|+|+|+++. ...++++|+.+ +|. .+++||+|+++.
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 3578999999 99999999987764 68999998742 23578899988 885 567999999973
Q ss_pred ccccCChHHHHHHHHhcccCCcEE-EEEe
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVC-VLHV 203 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~l-ii~v 203 (258)
..+......+++++.|+|||||++ ++.+
T Consensus 250 p~~~~~~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 250 PETLEAIRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp CSSHHHHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred CCchHHHHHHHHHHHHHcccCCeEEEEEE
Confidence 222222467889999999999954 4443
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-09 Score=102.03 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=71.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCCC--------------CceeeecCCCCC--CCCCCeeEEEec-
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPRP--------------PLVIKGDFHAQP--FDNGTFDFEFSN- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~~--------------~~~~~aDa~~LP--f~d~SFD~V~s~- 174 (258)
..++.+|||+|||+|..+..+++.+ ...|+|+|+++.. ..+.++|+..++ +++++||.|+++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 4678899999999999999888754 2589999997642 346788988887 777899999963
Q ss_pred ------cccccCCh----------------HHHHHHHHhcccCCcEEEEEe
Q 025071 175 ------VFDHALYP----------------WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ------~l~h~~~p----------------~~~l~Ei~RVLKPGG~lii~v 203 (258)
.+.+.++. ..+++++.++|||||++++.+
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst 374 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 374 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 34443332 367899999999999998864
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-09 Score=95.34 Aligned_cols=112 Identities=13% Similarity=0.009 Sum_probs=82.6
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEe
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFS 173 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s 173 (258)
..+.++.+|||||||+|..+.+++..| ...|+|+|+++. ...+..+|..+.+.+++.||+|+.
T Consensus 17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivi 96 (230)
T 3lec_A 17 NYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITI 96 (230)
T ss_dssp TTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred HhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEE
Confidence 356788899999999999999999876 357999998742 234788898877766668999875
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEee
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+.+-- .--...+.+..+.|+++|+++++-. ...+.+.+++.+.|+.-+.
T Consensus 97 aGmGg-~lI~~IL~~~~~~l~~~~~lIlqp~-------------~~~~~lr~~L~~~Gf~i~~ 145 (230)
T 3lec_A 97 CGMGG-RLIADILNNDIDKLQHVKTLVLQPN-------------NREDDLRKWLAANDFEIVA 145 (230)
T ss_dssp EEECH-HHHHHHHHHTGGGGTTCCEEEEEES-------------SCHHHHHHHHHHTTEEEEE
T ss_pred eCCch-HHHHHHHHHHHHHhCcCCEEEEECC-------------CChHHHHHHHHHCCCEEEE
Confidence 31110 0123567888999999999888631 1368899999999875443
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-09 Score=101.85 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=70.3
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC---------------CCceeeecCCCCC--CCCCCeeEEE
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR---------------PPLVIKGDFHAQP--FDNGTFDFEF 172 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~---------------~~~~~~aDa~~LP--f~d~SFD~V~ 172 (258)
...++.+|||+|||+|..+..+++. + ...|+|+|+++. ...++++|+..++ +++++||.|+
T Consensus 256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 335 (450)
T 2yxl_A 256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVL 335 (450)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEE
Confidence 3567889999999999999888863 2 258999998742 2346778988887 7778999999
Q ss_pred ec-------cccccCCh----------------HHHHHHHHhcccCCcEEEEEe
Q 025071 173 SN-------VFDHALYP----------------WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 173 s~-------~l~h~~~p----------------~~~l~Ei~RVLKPGG~lii~v 203 (258)
++ .+.+.++. ..+++++.++|||||++++.+
T Consensus 336 ~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t 389 (450)
T 2yxl_A 336 LDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT 389 (450)
T ss_dssp EECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 63 33433332 467899999999999998864
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=6.6e-10 Score=94.61 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=64.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCCC-C-CC--C--CCee
Q 025071 114 FNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHAQ-P-FD--N--GTFD 169 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~L-P-f~--d--~SFD 169 (258)
.++.+|||||||+|..+..+++. + ..+|+|+|+++. ...++.+|+.+. + +. + ++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 36789999999999999999874 2 358999998752 123566766432 1 21 1 7899
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+++.- ..+...+++++.|+|||||++++.
T Consensus 148 ~v~~d~~--~~~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 148 VAVVDAD--KENCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp EEEECSC--STTHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCC--HHHHHHHHHHHHHHcCCCeEEEEE
Confidence 9998532 224567899999999999999885
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.3e-09 Score=95.17 Aligned_cols=110 Identities=13% Similarity=0.003 Sum_probs=80.7
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEe
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFS 173 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s 173 (258)
..+.++.+|||||||+|.++.+|++.| ...|+|+|+++. ...+..+|..+...+++.||+|++
T Consensus 17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivi 96 (244)
T 3gnl_A 17 SYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVI 96 (244)
T ss_dssp TTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred HhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEE
Confidence 356788999999999999999999876 347999998742 134678888776665557999876
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
+.+-- .--...+.+..+.|+++|+++++-. ...+.+.+++.+.|+.-
T Consensus 97 agmGg-~lI~~IL~~~~~~L~~~~~lIlq~~-------------~~~~~lr~~L~~~Gf~i 143 (244)
T 3gnl_A 97 AGMGG-TLIRTILEEGAAKLAGVTKLILQPN-------------IAAWQLREWSEQNNWLI 143 (244)
T ss_dssp EEECH-HHHHHHHHHTGGGGTTCCEEEEEES-------------SCHHHHHHHHHHHTEEE
T ss_pred eCCch-HHHHHHHHHHHHHhCCCCEEEEEcC-------------CChHHHHHHHHHCCCEE
Confidence 31110 0023467889999999999988631 14688999999888653
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.8e-09 Score=101.85 Aligned_cols=89 Identities=11% Similarity=0.119 Sum_probs=67.5
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC---------------CCceeeecCCCCCC-CCCCeeEEEec--
Q 025071 115 NESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR---------------PPLVIKGDFHAQPF-DNGTFDFEFSN-- 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~---------------~~~~~~aDa~~LPf-~d~SFD~V~s~-- 174 (258)
++.+|||+|||+|..+..|++. + ...|+|+|+++. ...++++|+..++. .+++||.|+++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 7889999999999999988874 2 357999998742 12467789888775 57899999973
Q ss_pred -----cccccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 025071 175 -----VFDHALY----------------PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 -----~l~h~~~----------------p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++.+.++ ..++++++.|+|||||++++.+
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT 246 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST 246 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 2332221 2357899999999999998864
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-09 Score=94.42 Aligned_cols=87 Identities=18% Similarity=0.261 Sum_probs=64.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCCC-C-C-----CCCCe
Q 025071 114 FNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHAQ-P-F-----DNGTF 168 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~L-P-f-----~d~SF 168 (258)
.++.+|||||||+|..+..+++. + ..+++++|+++. ...++.+|+.+. | + ++++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 35679999999999999988864 2 358999998742 123567776542 3 2 26899
Q ss_pred eEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+|++.+- ..+...+++++.++|||||++++.
T Consensus 149 D~I~~d~~--~~~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 149 DFGFVDAD--KPNYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp EEEEECSC--GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEECCc--hHHHHHHHHHHHHhcCCCeEEEEe
Confidence 99998532 124567889999999999999875
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.2e-09 Score=91.27 Aligned_cols=110 Identities=13% Similarity=0.000 Sum_probs=78.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC----------------CCceeeecCC-CCCCCCCCeeEEEe
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR----------------PPLVIKGDFH-AQPFDNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~----------------~~~~~~aDa~-~LPf~d~SFD~V~s 173 (258)
.+.++.+|||||||+|..+.+++..+ ...|+|+|+++. ...+..+|.. .+|.. +.||+|+.
T Consensus 12 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~-~~~D~Ivi 90 (225)
T 3kr9_A 12 FVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET-DQVSVITI 90 (225)
T ss_dssp TSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG-GCCCEEEE
T ss_pred hCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccC-cCCCEEEE
Confidence 46778899999999999999999876 357999998742 1246777873 44432 26998886
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEee
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+.+.. .--...+.+..+.|+|||++++.-. .....+.+++.+.|+.-+.
T Consensus 91 aG~Gg-~~i~~Il~~~~~~L~~~~~lVlq~~-------------~~~~~vr~~L~~~Gf~i~~ 139 (225)
T 3kr9_A 91 AGMGG-RLIARILEEGLGKLANVERLILQPN-------------NREDDLRIWLQDHGFQIVA 139 (225)
T ss_dssp EEECH-HHHHHHHHHTGGGCTTCCEEEEEES-------------SCHHHHHHHHHHTTEEEEE
T ss_pred cCCCh-HHHHHHHHHHHHHhCCCCEEEEECC-------------CCHHHHHHHHHHCCCEEEE
Confidence 42211 0124567899999999999888531 1468899999998876444
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.6e-09 Score=95.75 Aligned_cols=83 Identities=17% Similarity=0.128 Sum_probs=65.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEeccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSNVF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~~l 176 (258)
+.++.+|||+|||+|..+.. ++ +...|+|+|+++. ...++++|+.+.+ ++||+|+++--
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP 267 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP 267 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT
T ss_pred cCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc
Confidence 45788999999999999988 76 5568999998741 2347788888776 89999999621
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
. ....++.++.++|+|||.+++..
T Consensus 268 ~---~~~~~l~~~~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 268 K---FAHKFIDKALDIVEEGGVIHYYT 291 (336)
T ss_dssp T---TGGGGHHHHHHHEEEEEEEEEEE
T ss_pred H---hHHHHHHHHHHHcCCCCEEEEEE
Confidence 1 12367899999999999988864
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-09 Score=101.48 Aligned_cols=90 Identities=16% Similarity=0.086 Sum_probs=65.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCC-CCCCCCeeEEEec--c
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQ-PFDNGTFDFEFSN--V 175 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~L-Pf~d~SFD~V~s~--~ 175 (258)
..++.+|||+|||||..+..+++.|.. |+|+|+++. ...+.++|+.++ +..++.||+|+++ .
T Consensus 212 ~~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 212 VRPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CCTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred hcCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 446889999999999999999988864 999999752 123567777653 2223449999996 2
Q ss_pred ccc--------cCChHHHHHHHHhcccCCcEEEEEe
Q 025071 176 FDH--------ALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 l~h--------~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+.. ..+...+++++.|+|||||++++..
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s 326 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSS 326 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 221 1123467889999999999998654
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-09 Score=104.45 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=68.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC--------------CCceeeecCCCCC-CCCCCeeEEEec-
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR--------------PPLVIKGDFHAQP-FDNGTFDFEFSN- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~--------------~~~~~~aDa~~LP-f~d~SFD~V~s~- 174 (258)
..++.+|||+|||+|..+..+++. + ...|+|+|+++. ...++++|+..++ +.+++||.|+++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence 567899999999999999988864 2 247999998742 1346678887776 457899999963
Q ss_pred ------cccccCCh----------------HHHHHHHHhcccCCcEEEEEe
Q 025071 175 ------VFDHALYP----------------WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ------~l~h~~~p----------------~~~l~Ei~RVLKPGG~lii~v 203 (258)
.+.+.++. .++++++.++|||||+++..+
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT 229 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST 229 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 23332221 567899999999999998753
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-08 Score=92.43 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=68.3
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCC------CCC-------CceeeecCCCCCCCCCCeeEE
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLV------PRP-------PLVIKGDFHAQPFDNGTFDFE 171 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s------~~~-------~~~~~aDa~~LPf~d~SFD~V 171 (258)
++.+...+.++.+|||+|||+|.++...++. +...|+|+|+. +.+ ....+.+++..+++++.||+|
T Consensus 65 ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlV 144 (277)
T 3evf_A 65 WFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTL 144 (277)
T ss_dssp HHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEE
T ss_pred HHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEE
Confidence 3444556778889999999999999977654 55567777764 111 012455556678889999999
Q ss_pred EeccccccC----ChH---HHHHHHHhcccCC-cEEEEEec
Q 025071 172 FSNVFDHAL----YPW---KFVGEIERTLKPA-GVCVLHVA 204 (258)
Q Consensus 172 ~s~~l~h~~----~p~---~~l~Ei~RVLKPG-G~lii~v~ 204 (258)
+|....+.- |-. ..++.+.++|||| |.+++=+-
T Consensus 145 lsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf 185 (277)
T 3evf_A 145 LCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVL 185 (277)
T ss_dssp EECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred EecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 996322211 211 2358889999999 99988654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.2e-09 Score=99.26 Aligned_cols=91 Identities=14% Similarity=0.163 Sum_probs=67.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------------CCceeeecCCC-CCC---CCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------------PPLVIKGDFHA-QPF---DNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------------~~~~~~aDa~~-LPf---~d~SFD~V~ 172 (258)
.++.+|||+|||+|..+..+++.|...|+|+|+++. ...++++|+.+ ++. .+++||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 467899999999999999998877668999999763 12467778755 332 256899999
Q ss_pred ec--cc----cccCChH----HHHHHHHhcccCCcEEEEEec
Q 025071 173 SN--VF----DHALYPW----KFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 173 s~--~l----~h~~~p~----~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++ .+ .+..+.. .+++++.++|||||++++...
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 85 22 2333332 356778999999999988653
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-09 Score=94.79 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=65.1
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCC-CCee
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDN-GTFD 169 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d-~SFD 169 (258)
.+.+++...+.++.+|||||||+|..+..|++.+ .+|+|+|+++. ...++++|+.++|+++ +.|+
T Consensus 19 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~~ 97 (244)
T 1qam_A 19 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYK 97 (244)
T ss_dssp HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCE
T ss_pred HHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCeE
Confidence 3344444445678899999999999999998877 58999998641 2357889999999985 5664
Q ss_pred EEEec------------cccccCChHHHH---HH-HHhcccCCcEEEE
Q 025071 170 FEFSN------------VFDHALYPWKFV---GE-IERTLKPAGVCVL 201 (258)
Q Consensus 170 ~V~s~------------~l~h~~~p~~~l---~E-i~RVLKPGG~lii 201 (258)
|+++ .++|...+..++ +| +.|+++|||.+.+
T Consensus 98 -vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~v 144 (244)
T 1qam_A 98 -IFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLAL 144 (244)
T ss_dssp -EEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHHH
T ss_pred -EEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchhH
Confidence 4443 122323333333 34 7888888885433
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.2e-08 Score=93.68 Aligned_cols=136 Identities=15% Similarity=0.240 Sum_probs=84.8
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCC----CC
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHA----QP 162 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~----LP 162 (258)
.+++.+++.....++.+|||+|||+|.++..|++.+ .+|+|+|+++. ...++++|+.+ +|
T Consensus 273 ~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~ 351 (433)
T 1uwv_A 273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 351 (433)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG
T ss_pred HHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhh
Confidence 344444443345567899999999999999999874 58999998742 23478888877 66
Q ss_pred CCCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhh-cCceEEeeeecCC
Q 025071 163 FDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFR-ESELVAVRKVDGF 241 (258)
Q Consensus 163 f~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~-~~~~~~v~~v~g~ 241 (258)
+++++||+|+++--.... ..+++.+.+ ++|++++++..... .+ .+.+..+.+ ...+..+..+|-|
T Consensus 352 ~~~~~fD~Vv~dPPr~g~--~~~~~~l~~-~~p~~ivyvsc~p~---------tl--ard~~~l~~~Gy~~~~~~~~d~F 417 (433)
T 1uwv_A 352 WAKNGFDKVLLDPARAGA--AGVMQQIIK-LEPIRIVYVSCNPA---------TL--ARDSEALLKAGYTIARLAMLDMF 417 (433)
T ss_dssp GGTTCCSEEEECCCTTCC--HHHHHHHHH-HCCSEEEEEESCHH---------HH--HHHHHHHHHTTCEEEEEEEECCS
T ss_pred hhcCCCCEEEECCCCccH--HHHHHHHHh-cCCCeEEEEECChH---------HH--HhhHHHHHHCCcEEEEEEEeccC
Confidence 888999999996111101 234455543 78999888753211 00 233433333 2335565666543
Q ss_pred ----CCeEEEEEEeC
Q 025071 242 ----GLDTEVVFRKK 252 (258)
Q Consensus 242 ----~l~~~~~f~K~ 252 (258)
+..+.+.|+|.
T Consensus 418 p~t~HvE~v~ll~r~ 432 (433)
T 1uwv_A 418 PHTGHLESMVLFSRV 432 (433)
T ss_dssp TTSSCCEEEEEEEC-
T ss_pred CCCCeEEEEEEEEEC
Confidence 44467777764
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-09 Score=109.27 Aligned_cols=90 Identities=19% Similarity=0.271 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------------CCceeeecCCC-CCCCCCCeeEEEec--
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------------PPLVIKGDFHA-QPFDNGTFDFEFSN-- 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------------~~~~~~aDa~~-LPf~d~SFD~V~s~-- 174 (258)
++.+|||+|||||..+..++..|..+|+++|+++. ...++++|+.+ ++..+++||+|+++
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 67899999999999999888877767999998741 13467788766 56667899999995
Q ss_pred cc----------cccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 175 VF----------DHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 ~l----------~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
.+ ++..+....++++.++|||||++++...
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 22 1222345678899999999999997653
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.85 E-value=5e-09 Score=94.64 Aligned_cols=61 Identities=26% Similarity=0.307 Sum_probs=46.1
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEecc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNV 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~ 175 (258)
.+.++.+|||||||+|..+..|++.+ .+|+|+|+++. ...++.+|+.++|++ +||+|+++.
T Consensus 39 ~~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~Vv~n~ 114 (299)
T 2h1r_A 39 KIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVCTANI 114 (299)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEEEEEC
T ss_pred CCCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEEEEcC
Confidence 45678899999999999999998876 48999998641 224678899888875 899999973
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-09 Score=102.46 Aligned_cols=90 Identities=19% Similarity=0.162 Sum_probs=68.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCC----CCCCeeEEEe
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPF----DNGTFDFEFS 173 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf----~d~SFD~V~s 173 (258)
.++.+|||+|||+|..+..+++.|..+|+|+|+++. ...++++|+.++.. ++++||+|++
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 477899999999999999998877668999998742 22467788765532 3679999999
Q ss_pred c--ccc--------ccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 174 N--VFD--------HALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 174 ~--~l~--------h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+ .+. +......++.++.++|||||.+++..
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 335 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS 335 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5 111 11234567899999999999988764
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-09 Score=99.70 Aligned_cols=90 Identities=12% Similarity=0.090 Sum_probs=68.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------------CCceeeecCCCCCC----CCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------------PPLVIKGDFHAQPF----DNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------------~~~~~~aDa~~LPf----~d~SFD~V~ 172 (258)
.++.+|||+|||+|..+..+++.|...|+|+|+++. ...++++|+.++.- .+++||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 467899999999999999999887668999998741 12467778765422 257899999
Q ss_pred ec--cc--------cccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 173 SN--VF--------DHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 173 s~--~l--------~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++ .+ ++.......+.++.++|||||++++..
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 339 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFS 339 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 95 11 112344577899999999999998865
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.79 E-value=7.4e-09 Score=99.42 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=66.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCC---------------CCceeeecCCCCC-CCCCCeeEEEec
Q 025071 113 LFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPR---------------PPLVIKGDFHAQP-FDNGTFDFEFSN 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~---------------~~~~~~aDa~~LP-f~d~SFD~V~s~ 174 (258)
..++.+|||+|||+|..+..+++. +...|+|+|+++. ...+.++|+..++ +.+++||.|+++
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 567899999999999999888764 2347999999752 1235667877765 356899999974
Q ss_pred -------cccccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 025071 175 -------VFDHALY----------------PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 -------~l~h~~~----------------p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++.+-++ ...+++++.++|||||+++..+
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 234 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST 234 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2222111 1256899999999999998753
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=7.8e-09 Score=93.27 Aligned_cols=110 Identities=12% Similarity=0.077 Sum_probs=77.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEeccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSNVF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~~l 176 (258)
+.+|.+|||+|||+|.++..++..|...|+|+|+++. ...+..+|+..++. .+.||.|+++..
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECCC
Confidence 5689999999999999998888878668999998752 12367789888764 578999998632
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~ 231 (258)
. ....++.++.++|||||++.+....... . ..-...+.+.+..++.|
T Consensus 202 ~---~~~~~l~~a~~~lk~gG~ih~~~~~~e~--~---~~~~~~e~i~~~~~~~g 248 (278)
T 3k6r_A 202 V---RTHEFIPKALSIAKDGAIIHYHNTVPEK--L---MPREPFETFKRITKEYG 248 (278)
T ss_dssp S---SGGGGHHHHHHHEEEEEEEEEEEEEEGG--G---TTTTTHHHHHHHHHHTT
T ss_pred C---cHHHHHHHHHHHcCCCCEEEEEeeeccc--c---cchhHHHHHHHHHHHcC
Confidence 2 2345678899999999998765322110 0 00112455667766665
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=96.51 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=84.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc--------------CCCcEEEEeCCCC-----------------CCceeeecCCCCC
Q 025071 114 FNESKALSIGARVGQEVAALKLV--------------GVSDSIGIDLVPR-----------------PPLVIKGDFHAQP 162 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~--------------g~~~v~GvD~s~~-----------------~~~~~~aDa~~LP 162 (258)
.++.+|||.|||+|.++..+.+. ....++|+|+++. ...+.++|+...+
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 34679999999999988766542 1247999998631 3457888888777
Q ss_pred CCCCCeeEEEec-cccccC--C---------------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHH
Q 025071 163 FDNGTFDFEFSN-VFDHAL--Y---------------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLV 224 (258)
Q Consensus 163 f~d~SFD~V~s~-~l~h~~--~---------------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~ 224 (258)
... +||+|+++ -+.+.. + ...+++++.+.|||||++++.++..- -+... ....+.
T Consensus 250 ~~~-~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~---L~~~~---~~~~iR 322 (445)
T 2okc_A 250 PST-LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNV---LFEAG---AGETIR 322 (445)
T ss_dssp CSS-CEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHH---HHCST---HHHHHH
T ss_pred ccC-CcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcc---cccCc---HHHHHH
Confidence 554 89999997 222211 1 13678999999999999999876320 00000 124566
Q ss_pred H-HhhcCceEEeeeec-----CCCCeE-EEEEEeCC
Q 025071 225 K-LFRESELVAVRKVD-----GFGLDT-EVVFRKKK 253 (258)
Q Consensus 225 ~-lf~~~~~~~v~~v~-----g~~l~~-~~~f~K~~ 253 (258)
+ ++++..+..+.... +.+.++ .++|+|+.
T Consensus 323 ~~L~~~~~l~~ii~lp~~~F~~t~v~t~Il~~~k~~ 358 (445)
T 2okc_A 323 KRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQ 358 (445)
T ss_dssp HHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEESS
T ss_pred HHHHhcCcEEEEEeCCCCCccCCCCCEEEEEEECCC
Confidence 5 44555554444332 234444 66777754
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-08 Score=95.01 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=75.2
Q ss_pred CCEEEEECCCCCHHHHHHHhc------------------CCCcEEEEeCCC------------------------CCCce
Q 025071 116 ESKALSIGARVGQEVAALKLV------------------GVSDSIGIDLVP------------------------RPPLV 153 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~------------------g~~~v~GvD~s~------------------------~~~~~ 153 (258)
.-+|+|+||++|.++..+... ..-.|+..|+-. .++.+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 568999999999987654321 112466777531 01233
Q ss_pred ee---ecCCCCCCCCCCeeEEEec-cccccCChHH------------------------H---------------HHHHH
Q 025071 154 IK---GDFHAQPFDNGTFDFEFSN-VFDHALYPWK------------------------F---------------VGEIE 190 (258)
Q Consensus 154 ~~---aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~------------------------~---------------l~Ei~ 190 (258)
+. +.+..-.|+++|||+|+|+ +|||+.+... + ++-.+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3456688999999999996 7877654321 1 33448
Q ss_pred hcccCCcEEEEEeccccCc--C-----------------------c---C-CCCCCCChhHHHHHhhcCc
Q 025071 191 RTLKPAGVCVLHVALSRRA--D-----------------------K---Y-SANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 191 RVLKPGG~lii~v~~~~~~--~-----------------------~---y-~~~~~~s~~~l~~lf~~~~ 231 (258)
|+|||||++++.+...+.. + + + ....+.+.+|+..++++.|
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g 282 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEG 282 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHC
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcC
Confidence 9999999999986533221 1 0 1 1223358899999998765
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.3e-08 Score=90.80 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=56.9
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCeeE
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFDF 170 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD~ 170 (258)
.+.+++...+.++.+|||||||+|..+..|++.+ .+|+|+|+++. ...++++|+.++++++.+||.
T Consensus 39 ~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~ 117 (295)
T 3gru_A 39 VNKAVESANLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNK 117 (295)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSE
T ss_pred HHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCccE
Confidence 3344444456678899999999999999998875 58999999753 235789999999999999999
Q ss_pred EEec
Q 025071 171 EFSN 174 (258)
Q Consensus 171 V~s~ 174 (258)
|+++
T Consensus 118 Iv~N 121 (295)
T 3gru_A 118 VVAN 121 (295)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9987
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-08 Score=89.60 Aligned_cols=97 Identities=10% Similarity=0.090 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCC
Q 025071 100 FSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDN 165 (258)
Q Consensus 100 ~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d 165 (258)
+..+|..+.+. .++.+|||||||+|-++..+. +...++|+|+++. +..+.++|...-|.++
T Consensus 93 ld~fY~~i~~~---~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~ 167 (253)
T 3frh_A 93 LDTLYDFIFSA---ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE 167 (253)
T ss_dssp HHHHHHHHTSS---CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC
T ss_pred HHHHHHHHhcC---CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC
Confidence 44555544432 567899999999999988766 5568999999742 1236778888888776
Q ss_pred CCeeEEEec-cccccCC--hHHHHHHHHhcccCCcEEEEEec
Q 025071 166 GTFDFEFSN-VFDHALY--PWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 166 ~SFD~V~s~-~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+||+|++. +++|+.+ +...+ ++.+.|+++|+++- +|
T Consensus 168 -~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVs-fP 206 (253)
T 3frh_A 168 -AGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVS-FP 206 (253)
T ss_dssp -BCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEE-EE
T ss_pred -CcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEE-cC
Confidence 89999986 5555542 22333 88899999866544 44
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=4e-09 Score=98.15 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=66.2
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCC----CCCCeeEEEec-
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPF----DNGTFDFEFSN- 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf----~d~SFD~V~s~- 174 (258)
++.+|||+|||+|..+..+++. ..+|+|+|+++. ...++++|+.++.. ++++||+|+++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 6789999999999999988876 458999998742 13467788765532 26799999995
Q ss_pred -ccc--------ccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 175 -VFD--------HALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 -~l~--------h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
.+. +......++.++.++|||||.+++...
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 111 112335678999999999999988753
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=8.9e-08 Score=90.90 Aligned_cols=86 Identities=16% Similarity=0.065 Sum_probs=62.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEeccccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h 178 (258)
+.++.+|||+|||+|.++..|++.+ .+|+|+|+++. ...+.++|+.+++.. +||+|+++--..
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~--~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVK--GFDTVIVDPPRA 364 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCT--TCSEEEECCCTT
T ss_pred cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCcc--CCCEEEEcCCcc
Confidence 4567899999999999999998875 48999998742 134788899887533 899999951111
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEe
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
-....+++++ +.|+|||++++..
T Consensus 365 -g~~~~~~~~l-~~l~p~givyvsc 387 (425)
T 2jjq_A 365 -GLHPRLVKRL-NREKPGVIVYVSC 387 (425)
T ss_dssp -CSCHHHHHHH-HHHCCSEEEEEES
T ss_pred -chHHHHHHHH-HhcCCCcEEEEEC
Confidence 1123455555 4599999998864
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.2e-08 Score=88.93 Aligned_cols=131 Identities=11% Similarity=0.087 Sum_probs=81.3
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCC--CC
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQP--FD 164 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LP--f~ 164 (258)
.++..+++.... .+.+|||+|||+|.++..|++. ...|+|+|+++. ...++++|++++. +.
T Consensus 201 ~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~ 278 (369)
T 3bt7_A 201 QMLEWALDVTKG-SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN 278 (369)
T ss_dssp HHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHS
T ss_pred HHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHh
Confidence 344444443222 3578999999999999999874 458999998742 1246777776542 22
Q ss_pred C--------------CCeeEEEeccccccCChHH--HHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhh
Q 025071 165 N--------------GTFDFEFSNVFDHALYPWK--FVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFR 228 (258)
Q Consensus 165 d--------------~SFD~V~s~~l~h~~~p~~--~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~ 228 (258)
+ ++||+|+.+ |.. +..++.++|+|+|.++... .... . -.+.+..+..
T Consensus 279 ~~~~~~~l~~~~~~~~~fD~Vv~d-------PPr~g~~~~~~~~l~~~g~ivyvs-c~p~-------t--~ard~~~l~~ 341 (369)
T 3bt7_A 279 GVREFNRLQGIDLKSYQCETIFVD-------PPRSGLDSETEKMVQAYPRILYIS-CNPE-------T--LCKNLETLSQ 341 (369)
T ss_dssp SCCCCTTGGGSCGGGCCEEEEEEC-------CCTTCCCHHHHHHHTTSSEEEEEE-SCHH-------H--HHHHHHHHHH
T ss_pred hccccccccccccccCCCCEEEEC-------cCccccHHHHHHHHhCCCEEEEEE-CCHH-------H--HHHHHHHHhh
Confidence 2 489999985 211 2367888999999877653 1110 0 1244444444
Q ss_pred cCceEEeeeecCC----CCeEEEEEEe
Q 025071 229 ESELVAVRKVDGF----GLDTEVVFRK 251 (258)
Q Consensus 229 ~~~~~~v~~v~g~----~l~~~~~f~K 251 (258)
...+..+..+|-| ++.+.++|+|
T Consensus 342 ~y~~~~~~~~D~FP~T~HvE~v~ll~r 368 (369)
T 3bt7_A 342 THKVERLALFDQFPYTHHMQCGVLLTA 368 (369)
T ss_dssp HEEEEEEEEECCSTTSSCCEEEEEEEE
T ss_pred CcEEEEEEeeccCCCCCcEEEEEEEEe
Confidence 4556677777643 3336677765
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.60 E-value=3e-07 Score=86.15 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=61.7
Q ss_pred CCEEEEECCCCCHHHHHH--------Hh----cC----CCcEEEEeCCCC---------------------------CCc
Q 025071 116 ESKALSIGARVGQEVAAL--------KL----VG----VSDSIGIDLVPR---------------------------PPL 152 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L--------~~----~g----~~~v~GvD~s~~---------------------------~~~ 152 (258)
+.+|+|+|||+|.++..+ .+ .| .-+|...|+-.. ++.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 468999999999987654 11 11 235777775211 011
Q ss_pred e---eeecCCCCCCCCCCeeEEEec-cccccCCh--------------------------------------HHHHHHHH
Q 025071 153 V---IKGDFHAQPFDNGTFDFEFSN-VFDHALYP--------------------------------------WKFVGEIE 190 (258)
Q Consensus 153 ~---~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p--------------------------------------~~~l~Ei~ 190 (258)
+ +-+.+..-.|+++|||+|+|+ +|||+.+. ..+++..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223455677999999999996 78776522 22577889
Q ss_pred hcccCCcEEEEEecc
Q 025071 191 RTLKPAGVCVLHVAL 205 (258)
Q Consensus 191 RVLKPGG~lii~v~~ 205 (258)
|+|||||++++.+..
T Consensus 213 ~eL~pGG~mvl~~~g 227 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLG 227 (374)
T ss_dssp HHEEEEEEEEEEEEE
T ss_pred HHhCCCCEEEEEEec
Confidence 999999999998653
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-07 Score=88.52 Aligned_cols=101 Identities=11% Similarity=-0.006 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCC---------------------------------------CcEEE
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGV---------------------------------------SDSIG 143 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~---------------------------------------~~v~G 143 (258)
+...++......++..|||.+||+|.++..++..+. ..|+|
T Consensus 189 lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 189 MAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 444445444556778999999999998876654321 24999
Q ss_pred EeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec--cccccC---ChHHHHHHHHhcccC--CcEEE
Q 025071 144 IDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN--VFDHAL---YPWKFVGEIERTLKP--AGVCV 200 (258)
Q Consensus 144 vD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~--~l~h~~---~p~~~l~Ei~RVLKP--GG~li 200 (258)
+|+++. ...+.++|+.+++.++ +||+|+++ .-.... +....++++.++||+ ||.++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~-~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTED-EYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCC-CSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCC-CCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 998742 2357889999998764 89999997 222221 223456777778877 99988
Q ss_pred EEec
Q 025071 201 LHVA 204 (258)
Q Consensus 201 i~v~ 204 (258)
+.++
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8775
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-07 Score=84.54 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=54.7
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------CCceeeecCCCCCCCCC-CeeE
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------PPLVIKGDFHAQPFDNG-TFDF 170 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------~~~~~~aDa~~LPf~d~-SFD~ 170 (258)
.+.+++...+.++ +|||||||+|..+..|++.+ .+|+|+|+++. ...++++|+.++++++. .+|.
T Consensus 36 ~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~ 113 (271)
T 3fut_A 36 LRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSL 113 (271)
T ss_dssp HHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEE
T ss_pred HHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccE
Confidence 3444444456677 99999999999999999887 58999998752 23578899999999764 7899
Q ss_pred EEec
Q 025071 171 EFSN 174 (258)
Q Consensus 171 V~s~ 174 (258)
|++|
T Consensus 114 iv~N 117 (271)
T 3fut_A 114 LVAN 117 (271)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9997
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=89.06 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=71.3
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCC---------------------------------------CcEEE
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGV---------------------------------------SDSIG 143 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~---------------------------------------~~v~G 143 (258)
+.+.++......++.+|||++||+|.++..++..+. ..|+|
T Consensus 183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 444445544456778999999999998877654321 36999
Q ss_pred EeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec--cccccC---ChHHHHHHHHhcccC--CcEEE
Q 025071 144 IDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN--VFDHAL---YPWKFVGEIERTLKP--AGVCV 200 (258)
Q Consensus 144 vD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~--~l~h~~---~p~~~l~Ei~RVLKP--GG~li 200 (258)
+|+++. ...+.++|+.+++.+ ++||+|+++ ..+... +....++++.++||+ ||.++
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 341 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYY 341 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 999752 134788999998875 489999997 222221 234567888888887 88888
Q ss_pred EEec
Q 025071 201 LHVA 204 (258)
Q Consensus 201 i~v~ 204 (258)
+.++
T Consensus 342 iit~ 345 (385)
T 3ldu_A 342 LITS 345 (385)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8775
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-07 Score=83.84 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=53.1
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCC----C
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDN----G 166 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d----~ 166 (258)
.+.+++...+.++.+|||||||+|..+..|++.+ .+|+|+|+++. ...++++|+.++++++ +
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 96 (255)
T 3tqs_A 18 LQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDK 96 (255)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSS
T ss_pred HHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCC
Confidence 3344444456678899999999999999999877 58999998641 2357899999999864 5
Q ss_pred CeeEEEec
Q 025071 167 TFDFEFSN 174 (258)
Q Consensus 167 SFD~V~s~ 174 (258)
.|| |++|
T Consensus 97 ~~~-vv~N 103 (255)
T 3tqs_A 97 PLR-VVGN 103 (255)
T ss_dssp CEE-EEEE
T ss_pred CeE-EEec
Confidence 798 6664
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.6e-07 Score=86.66 Aligned_cols=102 Identities=13% Similarity=0.058 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCC---------------------------------------CcEE
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGV---------------------------------------SDSI 142 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~---------------------------------------~~v~ 142 (258)
.+...++......++..+||.+||+|.++...+..+. ..++
T Consensus 181 ~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 181 NMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 3444445544556778999999999998876654321 2499
Q ss_pred EEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec--cccccC---ChHHHHHHHHhcccC--CcEE
Q 025071 143 GIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN--VFDHAL---YPWKFVGEIERTLKP--AGVC 199 (258)
Q Consensus 143 GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~--~l~h~~---~p~~~l~Ei~RVLKP--GG~l 199 (258)
|+|+++. ...+.++|+.+++.++ +||+|++| .-..+. +....++++.++||+ ||.+
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~ 339 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNK-INGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQ 339 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccC-CcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 9998742 1347889999998765 89999997 111121 234566778888887 9999
Q ss_pred EEEec
Q 025071 200 VLHVA 204 (258)
Q Consensus 200 ii~v~ 204 (258)
++.++
T Consensus 340 ~iit~ 344 (384)
T 3ldg_A 340 FILTN 344 (384)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88875
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-07 Score=85.57 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------------CCceeeecCCCCCC
Q 025071 99 VFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR--------------PPLVIKGDFHAQPF 163 (258)
Q Consensus 99 ~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf 163 (258)
.+..+|..+.+. +.++.+|||||||+|-++..+... +...++|+|+++. ...+.+.|...-+
T Consensus 118 ~lD~fY~~i~~~--i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~- 194 (281)
T 3lcv_B 118 HLDEFYRELFRH--LPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR- 194 (281)
T ss_dssp GHHHHHHHHGGG--SCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-
T ss_pred hHHHHHHHHHhc--cCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-
Confidence 345556555442 355789999999999998877654 5568999998642 1235666665444
Q ss_pred CCCCeeEEEec-cccccCChH--HHHHHHHhcccCCcEEEEE
Q 025071 164 DNGTFDFEFSN-VFDHALYPW--KFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 164 ~d~SFD~V~s~-~l~h~~~p~--~~l~Ei~RVLKPGG~lii~ 202 (258)
+.+.+|+|++. +++|+.+.+ ..+ ++.+.|+|||.++-.
T Consensus 195 p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSf 235 (281)
T 3lcv_B 195 LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTF 235 (281)
T ss_dssp CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEE
T ss_pred CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEec
Confidence 56789999996 777775332 344 999999999877543
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.2e-07 Score=82.66 Aligned_cols=118 Identities=18% Similarity=0.188 Sum_probs=77.9
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-------CC------CcEEEEeCCCC--------------------------------
Q 025071 115 NESKALSIGARVGQEVAALKLV-------GV------SDSIGIDLVPR-------------------------------- 149 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-------g~------~~v~GvD~s~~-------------------------------- 149 (258)
++.+|||||||+|..+..+.+. +. .+++++|..+.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4568999999999987665331 21 37899997651
Q ss_pred ------C-----CceeeecCCC-CCCCCC----CeeEEEeccccccCCh----HHHHHHHHhcccCCcEEEEEeccccCc
Q 025071 150 ------P-----PLVIKGDFHA-QPFDNG----TFDFEFSNVFDHALYP----WKFVGEIERTLKPAGVCVLHVALSRRA 209 (258)
Q Consensus 150 ------~-----~~~~~aDa~~-LPf~d~----SFD~V~s~~l~h~~~p----~~~l~Ei~RVLKPGG~lii~v~~~~~~ 209 (258)
. ..++.+|+.+ +|--++ .||+|+...+.-..+| ..++++++|+|||||+++....
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa----- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS----- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC-----
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC-----
Confidence 0 0145667655 554333 7999999654332233 3578999999999999875221
Q ss_pred CcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEE
Q 025071 210 DKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVV 248 (258)
Q Consensus 210 ~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~ 248 (258)
...+.+.+.++|+. +..+.|++-+++++
T Consensus 215 ----------a~~vrr~L~~aGF~-v~~~~g~~~kr~m~ 242 (257)
T 2qy6_A 215 ----------AGFVRRGLQEAGFT-MQKRKGFGRKREML 242 (257)
T ss_dssp ----------BHHHHHHHHHHTEE-EEEECCSTTCCCEE
T ss_pred ----------CHHHHHHHHHCCCE-EEeCCCCCCCCceE
Confidence 13466777778886 45556777665433
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.45 E-value=2.9e-07 Score=85.92 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=62.1
Q ss_pred CCCEEEEECCCCCHHHHH--------HHh----cC-----CCcEEEEeCCCC----------------CCceee---ecC
Q 025071 115 NESKALSIGARVGQEVAA--------LKL----VG-----VSDSIGIDLVPR----------------PPLVIK---GDF 158 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~--------L~~----~g-----~~~v~GvD~s~~----------------~~~~~~---aDa 158 (258)
..-+|+|+||++|.++.. +.+ .+ .-.|+..|+... .+.++. +.+
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 346799999999986532 221 12 125788886311 123333 456
Q ss_pred CCCCCCCCCeeEEEec-cccccCChH---------------------------------HHHHHHHhcccCCcEEEEEec
Q 025071 159 HAQPFDNGTFDFEFSN-VFDHALYPW---------------------------------KFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 159 ~~LPf~d~SFD~V~s~-~l~h~~~p~---------------------------------~~l~Ei~RVLKPGG~lii~v~ 204 (258)
....|+++|||+|+|+ ++||+.+.. .+++-.+|.|||||++++.+.
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 6789999999999996 777765311 236777999999999999865
Q ss_pred c
Q 025071 205 L 205 (258)
Q Consensus 205 ~ 205 (258)
.
T Consensus 211 g 211 (359)
T 1m6e_X 211 G 211 (359)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.6e-07 Score=81.85 Aligned_cols=99 Identities=10% Similarity=0.030 Sum_probs=64.2
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC----CC-------c--eeeecCCCCCCCCCCeeEE
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR----PP-------L--VIKGDFHAQPFDNGTFDFE 171 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~----~~-------~--~~~aDa~~LPf~d~SFD~V 171 (258)
++.+...+.++.+|||+|||+|.++.+.++ .|...|+|+|+... +. . ....+.+-..++++.+|+|
T Consensus 81 ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvV 160 (282)
T 3gcz_A 81 WMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTL 160 (282)
T ss_dssp HHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEE
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEE
Confidence 444555678888999999999999997764 56667899998532 11 1 1222222234567899999
Q ss_pred EeccccccCCh----H---HHHHHHHhcccCC--cEEEEEec
Q 025071 172 FSNVFDHALYP----W---KFVGEIERTLKPA--GVCVLHVA 204 (258)
Q Consensus 172 ~s~~l~h~~~p----~---~~l~Ei~RVLKPG--G~lii~v~ 204 (258)
+|....+.-.+ . ..+.=+.++|||| |.+++=+-
T Consensus 161 LSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 161 LCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp EECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred EecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 99622221111 1 2345557899999 99888654
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.2e-07 Score=88.73 Aligned_cols=92 Identities=18% Similarity=0.128 Sum_probs=64.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc----C---------------CCcEEEEeCCCC--------------C------Ccee
Q 025071 114 FNESKALSIGARVGQEVAALKLV----G---------------VSDSIGIDLVPR--------------P------PLVI 154 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~----g---------------~~~v~GvD~s~~--------------~------~~~~ 154 (258)
.++.+|||.|||+|.++..+.+. + ...++|+|+++. . ..+.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 45679999999999987655431 1 136999998631 1 3467
Q ss_pred eecCCCCC-CCCCCeeEEEec-cccccC-------------C-hHHHHHHHHhcccCCcEEEEEecc
Q 025071 155 KGDFHAQP-FDNGTFDFEFSN-VFDHAL-------------Y-PWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 155 ~aDa~~LP-f~d~SFD~V~s~-~l~h~~-------------~-p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
++|+...+ +.++.||+|++| =+.... + ...++..+.+.|||||++++.++.
T Consensus 248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 78776544 456799999997 111111 1 136789999999999999998764
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-06 Score=71.24 Aligned_cols=83 Identities=11% Similarity=0.103 Sum_probs=59.4
Q ss_pred CCCCEEEEECCCCC-HHHHHHHh-cCCCcEEEEeCCCCCCceeeecCCCCCCCC--CCeeEEEeccccccCChHHHHHHH
Q 025071 114 FNESKALSIGARVG-QEVAALKL-VGVSDSIGIDLVPRPPLVIKGDFHAQPFDN--GTFDFEFSNVFDHALYPWKFVGEI 189 (258)
Q Consensus 114 ~~~~~VLDIGcGtG-~~~~~L~~-~g~~~v~GvD~s~~~~~~~~aDa~~LPf~d--~SFD~V~s~~l~h~~~p~~~l~Ei 189 (258)
.++++|||||||.| ..+..|++ .|+ +|+++|+++....+++.|..+ |..+ +.||+|.+ +.--.+-+..+.++
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~~v~dDiF~-P~~~~Y~~~DLIYs--irPP~El~~~i~~l 109 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGGIVRDDITS-PRMEIYRGAALIYS--IRPPAEIHSSLMRV 109 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTTEECCCSSS-CCHHHHTTEEEEEE--ESCCTTTHHHHHHH
T ss_pred CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccceEEccCCC-CcccccCCcCEEEE--cCCCHHHHHHHHHH
Confidence 45689999999999 69999997 886 799999998777789999877 5443 48999987 21112234445555
Q ss_pred HhcccCCcEEEEE
Q 025071 190 ERTLKPAGVCVLH 202 (258)
Q Consensus 190 ~RVLKPGG~lii~ 202 (258)
++-. |.-+++.
T Consensus 110 A~~v--~adliI~ 120 (153)
T 2k4m_A 110 ADAV--GARLIIK 120 (153)
T ss_dssp HHHH--TCEEEEE
T ss_pred HHHc--CCCEEEE
Confidence 5533 4556554
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.3e-06 Score=75.47 Aligned_cols=71 Identities=15% Similarity=0.086 Sum_probs=52.0
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------CCceeeecCCCCCCCCCC-eeEE
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------PPLVIKGDFHAQPFDNGT-FDFE 171 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------~~~~~~aDa~~LPf~d~S-FD~V 171 (258)
.+.+++.....++.+|||||||+|..+..|++.|..+|+|+|+++. ...++++|+.++|+++.. ...|
T Consensus 20 ~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~v 99 (249)
T 3ftd_A 20 LKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELKV 99 (249)
T ss_dssp HHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEEE
T ss_pred HHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcEE
Confidence 3344444445678899999999999999999886568999998631 125788999999998632 2255
Q ss_pred Eec
Q 025071 172 FSN 174 (258)
Q Consensus 172 ~s~ 174 (258)
++|
T Consensus 100 v~N 102 (249)
T 3ftd_A 100 VGN 102 (249)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.33 E-value=8.3e-08 Score=85.25 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=48.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC-------C----------------CCceeeecCCCC-C-CCC--C
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP-------R----------------PPLVIKGDFHAQ-P-FDN--G 166 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~-------~----------------~~~~~~aDa~~L-P-f~d--~ 166 (258)
.++.+|||+|||+|..+..|++.|. +|+|+|+++ . ...++++|+.++ + +++ +
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 3567999999999999999998874 899999987 2 134677888763 4 555 7
Q ss_pred CeeEEEec
Q 025071 167 TFDFEFSN 174 (258)
Q Consensus 167 SFD~V~s~ 174 (258)
+||+|+++
T Consensus 161 ~fD~V~~d 168 (258)
T 2r6z_A 161 KPDIVYLD 168 (258)
T ss_dssp CCSEEEEC
T ss_pred CccEEEEC
Confidence 99999996
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.2e-06 Score=78.07 Aligned_cols=89 Identities=12% Similarity=0.035 Sum_probs=61.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCC---------------CCceeeecCCCCCCCC---CCeeEEE
Q 025071 113 LFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDN---GTFDFEF 172 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d---~SFD~V~ 172 (258)
..++.+|||+|||+|..+..+++. +...|+|+|+++. ...++++|+.+++..+ ++||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 567889999999999999888763 3358999998642 1246788888876543 5899999
Q ss_pred ec-------cccccCC-----------h-------HHHHHHHHhcccCCcEEEEE
Q 025071 173 SN-------VFDHALY-----------P-------WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~-------~l~h~~~-----------p-------~~~l~Ei~RVLKPGG~lii~ 202 (258)
++ .+...++ . .+.++++.+.|| ||+++..
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYs 233 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYS 233 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEE
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEE
Confidence 73 2322111 0 135677778887 9987764
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.30 E-value=4.6e-07 Score=80.18 Aligned_cols=66 Identities=12% Similarity=-0.061 Sum_probs=48.0
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCc--EEEEeCCCC-------------CCceeeecCCCCCCCCC----
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLVGVSD--SIGIDLVPR-------------PPLVIKGDFHAQPFDNG---- 166 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~--v~GvD~s~~-------------~~~~~~aDa~~LPf~d~---- 166 (258)
.+++...+.++.+|||||||+|..+. ++. + .+ |+|+|+++. ...++++|+.++++++.
T Consensus 12 ~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 88 (252)
T 1qyr_A 12 SIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKM 88 (252)
T ss_dssp HHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHH
T ss_pred HHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhccc
Confidence 33443345678899999999999999 765 3 36 999998631 12478899999988642
Q ss_pred -CeeEEEec
Q 025071 167 -TFDFEFSN 174 (258)
Q Consensus 167 -SFD~V~s~ 174 (258)
..|.|++|
T Consensus 89 ~~~~~vvsN 97 (252)
T 1qyr_A 89 GQPLRVFGN 97 (252)
T ss_dssp TSCEEEEEE
T ss_pred CCceEEEEC
Confidence 35677776
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.27 E-value=3.1e-07 Score=81.92 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=57.5
Q ss_pred CCCC--CEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------------------CCceeeecCCC-CCCCC
Q 025071 113 LFNE--SKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------------------PPLVIKGDFHA-QPFDN 165 (258)
Q Consensus 113 l~~~--~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------------------~~~~~~aDa~~-LPf~d 165 (258)
+.++ .+|||+|||+|..+..++..|. +|+|+|+++. ...++++|+.+ ++...
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~ 162 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCc
Confidence 4556 7999999999999999998876 7999998752 12356777665 44333
Q ss_pred CCeeEEEec-cccccCChHHHHHHHHhcccCCc
Q 025071 166 GTFDFEFSN-VFDHALYPWKFVGEIERTLKPAG 197 (258)
Q Consensus 166 ~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG 197 (258)
++||+|+++ .+.+ .....++++..|+|++.+
T Consensus 163 ~~fDvV~lDP~y~~-~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 163 PRPQVVYLDPMFPH-KQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp SCCSEEEECCCCCC-CCC-----HHHHHHHHHS
T ss_pred ccCCEEEEcCCCCC-cccchHHHHHHHHHHHhh
Confidence 479999997 4544 233456678888998866
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=7.3e-06 Score=74.53 Aligned_cols=98 Identities=16% Similarity=0.112 Sum_probs=63.5
Q ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----CC-------c--eeeecCCCCCCCCCCeeEEEe
Q 025071 108 KQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----PP-------L--VIKGDFHAQPFDNGTFDFEFS 173 (258)
Q Consensus 108 ~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----~~-------~--~~~aDa~~LPf~d~SFD~V~s 173 (258)
.+...+.++.+|||+||++|.++..+.+. |...|+|+|+... +. . ....+.+-.-+..+.+|+|+|
T Consensus 74 ~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVls 153 (300)
T 3eld_A 74 HERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLC 153 (300)
T ss_dssp HHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred HHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEee
Confidence 33456778899999999999999999864 6667899998531 11 0 111122223355789999999
Q ss_pred ccccccCCh-------HHHHHHHHhcccCC-cEEEEEecc
Q 025071 174 NVFDHALYP-------WKFVGEIERTLKPA-GVCVLHVAL 205 (258)
Q Consensus 174 ~~l~h~~~p-------~~~l~Ei~RVLKPG-G~lii~v~~ 205 (258)
....+.-.+ ...+.=+.++|||| |.+++=+-.
T Consensus 154 D~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 154 DIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 632221111 12344457899999 998886543
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.23 E-value=7.7e-06 Score=79.95 Aligned_cols=132 Identities=12% Similarity=0.086 Sum_probs=80.0
Q ss_pred CEEEEECCCCCHHHHHHHhc--------C--------CCcEEEEeCCCC--------------CCce--eeecCCCCC-C
Q 025071 117 SKALSIGARVGQEVAALKLV--------G--------VSDSIGIDLVPR--------------PPLV--IKGDFHAQP-F 163 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~--------g--------~~~v~GvD~s~~--------------~~~~--~~aDa~~LP-f 163 (258)
.+|||.+||+|.++..+.+. + ...++|+|+++. ...+ .++|....| +
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 48999999999987654321 0 236899998642 1123 667765544 5
Q ss_pred CCCCeeEEEec---cccc-----------------------cC---Ch-HHHHHHHHhcccCCcEEEEEeccccCcCcCC
Q 025071 164 DNGTFDFEFSN---VFDH-----------------------AL---YP-WKFVGEIERTLKPAGVCVLHVALSRRADKYS 213 (258)
Q Consensus 164 ~d~SFD~V~s~---~l~h-----------------------~~---~p-~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~ 213 (258)
.+..||+|++| .... .+ +. -.+++.+.+.|||||++++++|..- -+
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~---L~- 401 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGS---MS- 401 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHH---HH-
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchh---hh-
Confidence 67899999997 2211 00 01 2578999999999999999886321 00
Q ss_pred CCCCCChhHHHHHhhcCc-eEEeeee-----cCCCCeE-EEEEEeCC
Q 025071 214 ANDLFSVKPLVKLFRESE-LVAVRKV-----DGFGLDT-EVVFRKKK 253 (258)
Q Consensus 214 ~~~~~s~~~l~~lf~~~~-~~~v~~v-----~g~~l~~-~~~f~K~~ 253 (258)
..--....+.+.+-+.+ +..+-.. .+.+.++ .++++|+.
T Consensus 402 -~~~~~~~~iRk~Lle~~~l~aII~LP~~lF~~t~i~t~Ilvl~K~k 447 (544)
T 3khk_A 402 -SNTNNEGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDK 447 (544)
T ss_dssp -CCGGGHHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEEEEEEESCC
T ss_pred -cCcchHHHHHHHHHhCCcHhEEEECCCCCCCCCCCCeEEEEEecCC
Confidence 00012456777665444 3333333 2334444 77788754
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1e-06 Score=87.71 Aligned_cols=82 Identities=21% Similarity=0.201 Sum_probs=56.9
Q ss_pred CCEEEEECCCCCHHHHHHH---hcCCC--cEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec-
Q 025071 116 ESKALSIGARVGQEVAALK---LVGVS--DSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~---~~g~~--~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
...|||||||+|-++..-. +.+.. +|++||.++. ...++.+|.+++..+ +.+|+|+|.
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSEw 436 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSEL 436 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECCC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEEc
Confidence 3579999999999854322 22222 5899998642 234789999988766 579999995
Q ss_pred ---cccccCChHHHHHHHHhcccCCcEE
Q 025071 175 ---VFDHALYPWKFVGEIERTLKPAGVC 199 (258)
Q Consensus 175 ---~l~h~~~p~~~l~Ei~RVLKPGG~l 199 (258)
.+.+-..| .++.-..|.|||||.+
T Consensus 437 MG~fLl~E~ml-evL~Ardr~LKPgGim 463 (637)
T 4gqb_A 437 LGSFADNELSP-ECLDGAQHFLKDDGVS 463 (637)
T ss_dssp CBTTBGGGCHH-HHHHHHGGGEEEEEEE
T ss_pred CcccccccCCH-HHHHHHHHhcCCCcEE
Confidence 22222235 4666778999999964
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.2e-06 Score=81.96 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=62.9
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------------------C---CceeeecCCCCCC
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------------------P---PLVIKGDFHAQPF 163 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------------------~---~~~~~aDa~~LPf 163 (258)
++.+|||+|||+|..+..++.. |...|+++|+++. . ..+.++|+..+..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 5789999999999999888764 5557999998642 1 2345667654421
Q ss_pred -CCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 164 -DNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 164 -~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
..++||+|+.+-. -.+..++..+.+.|||||+++++.
T Consensus 127 ~~~~~fD~I~lDP~---~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDPF---GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECCS---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCCC---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 1458999997522 134678899999999999887763
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-06 Score=77.75 Aligned_cols=60 Identities=12% Similarity=0.043 Sum_probs=45.8
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCC---cEEEEeCCCC-----------CCceeeecCCCCCCCC
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLVGVS---DSIGIDLVPR-----------PPLVIKGDFHAQPFDN 165 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~---~v~GvD~s~~-----------~~~~~~aDa~~LPf~d 165 (258)
.+++...+.++.+|||||||+|..+..|++.+.. +|+|+|+++. ...++++|+.++||++
T Consensus 33 ~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 33 AIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred HHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 3444434667889999999999999999876532 2999998742 2347899999999875
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=6.1e-06 Score=77.32 Aligned_cols=132 Identities=14% Similarity=0.115 Sum_probs=85.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------CceeeecCCCCCCCCCCeeEEEeccccccCChHH
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------PLVIKGDFHAQPFDNGTFDFEFSNVFDHALYPWK 184 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------~~~~~aDa~~LPf~d~SFD~V~s~~l~h~~~p~~ 184 (258)
+.+|.+|||+||++|..+..|.+.|. .|+|||..+-. ..++++|+.....+++.||+|+|... .+|..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~---~~p~~ 284 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMV---EKPAK 284 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCS---SCHHH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCC---CChHH
Confidence 67899999999999999999998874 89999986532 24678899988888889999999632 35788
Q ss_pred HHHHHHhcccCCc--EEEEEeccccCcCcCCCCCC-CChhHHHHHhhcCceE---EeeeecCCCCeEEEEEEe
Q 025071 185 FVGEIERTLKPAG--VCVLHVALSRRADKYSANDL-FSVKPLVKLFRESELV---AVRKVDGFGLDTEVVFRK 251 (258)
Q Consensus 185 ~l~Ei~RVLKPGG--~lii~v~~~~~~~~y~~~~~-~s~~~l~~lf~~~~~~---~v~~v~g~~l~~~~~f~K 251 (258)
.+.-+.+.|..|- .+++++-..- ...| +.+ .....+.+.|.+.|+. .+++.-...-.-+|..+|
T Consensus 285 ~~~l~~~wl~~~~~~~aI~~lKL~m-k~~~--~~l~~~~~~i~~~l~~~g~~~~l~akhL~hdReEiTV~~rk 354 (375)
T 4auk_A 285 VAALMAQWLVNGWCRETIFNLKLPM-KKRY--EEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEVTVHVRR 354 (375)
T ss_dssp HHHHHHHHHHTTSCSEEEEEEECCS-SSHH--HHHHHHHHHHHHHHHHTTCCEEEEEECCTTCSSEEEEEEEE
T ss_pred hHHHHHHHHhccccceEEEEEEecc-cchH--HHHHHHHHHHHHHHHhcCcchhheehhhccCCcEEEEEEEe
Confidence 8888888887772 3444432110 0001 000 1234466677777653 334331111123666666
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-06 Score=77.86 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=61.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CC----CcEEEEe--CCCCC-----Cceee---e-cCCCCCCCCCCe
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKLV-GV----SDSIGID--LVPRP-----PLVIK---G-DFHAQPFDNGTF 168 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~----~~v~GvD--~s~~~-----~~~~~---a-Da~~LPf~d~SF 168 (258)
.++.+...++++.+|||+||++|.++.+.++. +. ..++|+| +.+.. ..+++ + |+.+++ ...+
T Consensus 63 ~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~ 140 (269)
T 2px2_A 63 RWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKP--SEIS 140 (269)
T ss_dssp HHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSC--CCCC
T ss_pred HHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCC--CCCC
Confidence 34555567889999999999999999988764 22 2355666 33321 12333 5 887643 5689
Q ss_pred eEEEeccccccCCh----H---HHHHHHHhcccCCc-EEEEEec
Q 025071 169 DFEFSNVFDHALYP----W---KFVGEIERTLKPAG-VCVLHVA 204 (258)
Q Consensus 169 D~V~s~~l~h~~~p----~---~~l~Ei~RVLKPGG-~lii~v~ 204 (258)
|+|+|..-....++ . .++.=+.++||||| .+++=+-
T Consensus 141 DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 141 DTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 99999521111111 1 13433448999999 7766443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.6e-06 Score=84.59 Aligned_cols=103 Identities=16% Similarity=0.029 Sum_probs=67.3
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcC-------------------------------------------CC
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLVG-------------------------------------------VS 139 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g-------------------------------------------~~ 139 (258)
+...++......++..|||.+||+|.++...+..+ ..
T Consensus 178 LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 178 LAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 33444444445567899999999999876655321 13
Q ss_pred cEEEEeCCCCC----------------CceeeecCCCC--CCCCCCeeEEEec---cccccCC--hHH---HHHHHHhcc
Q 025071 140 DSIGIDLVPRP----------------PLVIKGDFHAQ--PFDNGTFDFEFSN---VFDHALY--PWK---FVGEIERTL 193 (258)
Q Consensus 140 ~v~GvD~s~~~----------------~~~~~aDa~~L--Pf~d~SFD~V~s~---~l~h~~~--p~~---~l~Ei~RVL 193 (258)
.++|+|+++.. ..+.++|+.++ |+.+++||+|++| ....... -.. .+.++.+.+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 69999987521 24778898877 5556699999997 2111111 122 345566666
Q ss_pred cCCcEEEEEecc
Q 025071 194 KPAGVCVLHVAL 205 (258)
Q Consensus 194 KPGG~lii~v~~ 205 (258)
.|||.+++.++.
T Consensus 338 ~~g~~~~ilt~~ 349 (703)
T 3v97_A 338 FGGWNLSLFSAS 349 (703)
T ss_dssp CTTCEEEEEESC
T ss_pred CCCCeEEEEeCC
Confidence 789999998764
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.6e-06 Score=81.62 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=62.5
Q ss_pred CCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCC--------------C---CceeeecCCCCC--CCCCCeeEEEe
Q 025071 115 NESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPR--------------P---PLVIKGDFHAQP--FDNGTFDFEFS 173 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~--------------~---~~~~~aDa~~LP--f~d~SFD~V~s 173 (258)
++.+|||++||+|..+..++.. |...|+++|+++. . ..++.+|+.++- -..+.||+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 5789999999999998877763 4468999998642 1 345667764321 11468999998
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+-. -.+..++..+.+.|||||+++++.
T Consensus 132 DP~---g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DPF---GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CCS---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCC---cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 631 124568889999999999888764
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.1e-05 Score=71.57 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=67.7
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC----CC----------ceeee-cCCCCCCCCCC
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR----PP----------LVIKG-DFHAQPFDNGT 167 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~----~~----------~~~~a-Da~~LPf~d~S 167 (258)
+.++.+...+.++.+|||+||++|.++.+.+. .|...|+|+|+-.. |. .+..+ |+..++- ..
T Consensus 83 L~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~ 160 (321)
T 3lkz_A 83 LRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--EC 160 (321)
T ss_dssp HHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CC
Confidence 34455556778889999999999999997664 56668999998532 11 13334 7767764 56
Q ss_pred eeEEEeccccccCChH-------HHHHHHHhcccCC-cEEEEEec
Q 025071 168 FDFEFSNVFDHALYPW-------KFVGEIERTLKPA-GVCVLHVA 204 (258)
Q Consensus 168 FD~V~s~~l~h~~~p~-------~~l~Ei~RVLKPG-G~lii~v~ 204 (258)
+|+|+|..-+...+|. +++.=+.+.|++| |-+++=+-
T Consensus 161 ~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl 205 (321)
T 3lkz_A 161 CDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVL 205 (321)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred CCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEc
Confidence 9999996325555553 2444446788999 87766544
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.1e-06 Score=76.93 Aligned_cols=63 Identities=17% Similarity=0.080 Sum_probs=48.1
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------------CCceeeecCCCCCC--C---CCCeeEE
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR--------------PPLVIKGDFHAQPF--D---NGTFDFE 171 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf--~---d~SFD~V 171 (258)
.+.++.+|||+|||+|..+.++++. +...|+|+|.++. ...++++|+.++|. + .++||.|
T Consensus 23 ~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~V 102 (301)
T 1m6y_A 23 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGI 102 (301)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEE
Confidence 4567889999999999999988875 2358999998641 23478888888762 2 2689999
Q ss_pred Eec
Q 025071 172 FSN 174 (258)
Q Consensus 172 ~s~ 174 (258)
+++
T Consensus 103 l~D 105 (301)
T 1m6y_A 103 LMD 105 (301)
T ss_dssp EEE
T ss_pred EEc
Confidence 974
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.3e-05 Score=78.25 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=83.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhc----CCCcEEEEeCCCC-----------------CCceeeecCCCC--C-CCCCCeeE
Q 025071 115 NESKALSIGARVGQEVAALKLV----GVSDSIGIDLVPR-----------------PPLVIKGDFHAQ--P-FDNGTFDF 170 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~----g~~~v~GvD~s~~-----------------~~~~~~aDa~~L--P-f~d~SFD~ 170 (258)
++.+|||.+||+|.++..+.+. +...++|+|+++. ...+.++|.... | +.+..||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 5679999999999987665442 2357999998642 113677887665 4 56789999
Q ss_pred EEec---ccccc------CC---------------hHHHHHHHHhccc-CCcEEEEEeccccCcCcCCCCCCCChhHHHH
Q 025071 171 EFSN---VFDHA------LY---------------PWKFVGEIERTLK-PAGVCVLHVALSRRADKYSANDLFSVKPLVK 225 (258)
Q Consensus 171 V~s~---~l~h~------~~---------------p~~~l~Ei~RVLK-PGG~lii~v~~~~~~~~y~~~~~~s~~~l~~ 225 (258)
|++| ...+. .+ --.++..+.+.|| |||++++.+|..- -+. .. ....+.+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~---Lf~-~~--~~~~iRk 374 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGV---LFR-GN--AEGTIRK 374 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHH---HHC-CT--HHHHHHH
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchH---hhC-Cc--hhHHHHH
Confidence 9997 21110 01 0237899999999 9999999887421 000 00 1355767
Q ss_pred HhhcCc-eEEeeee-----cCCCCeE-EEEEEeCC
Q 025071 226 LFRESE-LVAVRKV-----DGFGLDT-EVVFRKKK 253 (258)
Q Consensus 226 lf~~~~-~~~v~~v-----~g~~l~~-~~~f~K~~ 253 (258)
.+-+.+ +..+-.. .+.+.+| .++|+|+.
T Consensus 375 ~Lle~~~l~~II~LP~~lF~~t~i~t~Ilvl~K~k 409 (542)
T 3lkd_A 375 ALLEEGAIDTVIGLPANIFFNTSIPTTVIILKKNR 409 (542)
T ss_dssp HHHHTTCEEEEEECCSSCSSSCCCCEEEEEECSSC
T ss_pred HHHhCCceeEEEEccccccCCCCCcEEEEEEecCC
Confidence 665444 3333333 2334444 67777754
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=6.6e-05 Score=66.54 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=64.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC----C----------Cceeee-cCCCCCCCCCCe
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR----P----------PLVIKG-DFHAQPFDNGTF 168 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~----~----------~~~~~a-Da~~LPf~d~SF 168 (258)
.++.+...+.++.+|||+||++|.++.+.+. .|...|+|+|+-.. | ..+.++ |.+.++- ..+
T Consensus 68 ~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~--~~~ 145 (267)
T 3p8z_A 68 QWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP--EKC 145 (267)
T ss_dssp HHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC--CCC
T ss_pred HHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC--ccc
Confidence 3445555778889999999999999997664 56678999997431 1 125566 7666653 669
Q ss_pred eEEEeccccccCChH-------HHHHHHHhcccCCcEEEEEe
Q 025071 169 DFEFSNVFDHALYPW-------KFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 169 D~V~s~~l~h~~~p~-------~~l~Ei~RVLKPGG~lii~v 203 (258)
|.|+|..-+...+|. ++++=+.+.|++ |-+++=+
T Consensus 146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KV 186 (267)
T 3p8z_A 146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKV 186 (267)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEE
T ss_pred cEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEE
Confidence 999996333333433 244445688899 5555543
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.91 E-value=1.1e-05 Score=81.07 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=57.9
Q ss_pred CCEEEEECCCCCHHHHH-H---HhcC----------CCcEEEEeCCCC---------------CCceeeecCCCCCCC--
Q 025071 116 ESKALSIGARVGQEVAA-L---KLVG----------VSDSIGIDLVPR---------------PPLVIKGDFHAQPFD-- 164 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~-L---~~~g----------~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~-- 164 (258)
+..|||||||+|-++.. + +..| ..+|+|||.++. ...++.+|.+++..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 35799999999998642 2 1122 137999998641 245789999988774
Q ss_pred ---CCCeeEEEecccc----ccCChHHHHHHHHhcccCCcEE
Q 025071 165 ---NGTFDFEFSNVFD----HALYPWKFVGEIERTLKPAGVC 199 (258)
Q Consensus 165 ---d~SFD~V~s~~l~----h~~~p~~~l~Ei~RVLKPGG~l 199 (258)
.+..|+|+|.-+. +-..|+ .+.-+.|.|||||++
T Consensus 490 ~~~~ekVDIIVSElmGsfl~nEL~pe-~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFGDNELSPE-CLDGVTGFLKPTTIS 530 (745)
T ss_dssp HTTCCCCSEEEECCCBTTBGGGSHHH-HHHTTGGGSCTTCEE
T ss_pred cCCCCcccEEEEeccccccchhccHH-HHHHHHHhCCCCcEE
Confidence 5789999996332 222333 566678999999964
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.91 E-value=5e-05 Score=77.49 Aligned_cols=120 Identities=10% Similarity=-0.027 Sum_probs=72.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-C---CCcEEEEeCCCCCC---------------------ceeeecCCCC-CCCCCC
Q 025071 114 FNESKALSIGARVGQEVAALKLV-G---VSDSIGIDLVPRPP---------------------LVIKGDFHAQ-PFDNGT 167 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g---~~~v~GvD~s~~~~---------------------~~~~aDa~~L-Pf~d~S 167 (258)
.++.+|||.|||+|.++.++++. + ...++|+|+++... .+...|.... +...+.
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 45789999999999998887754 2 24699999875311 1222333332 335678
Q ss_pred eeEEEec--cccccCC----------------------------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCC
Q 025071 168 FDFEFSN--VFDHALY----------------------------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDL 217 (258)
Q Consensus 168 FD~V~s~--~l~h~~~----------------------------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~ 217 (258)
||+|++| ....... -..+++.+.+.|||||++++.+|..- -.+.-
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~-----Lf~sg 474 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY-----LTAQG 474 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH-----HHCCS
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHH-----hccCC
Confidence 9999997 2111111 12356889999999999999887421 00000
Q ss_pred CChhHHHHHhh-cCceEEeeee
Q 025071 218 FSVKPLVKLFR-ESELVAVRKV 238 (258)
Q Consensus 218 ~s~~~l~~lf~-~~~~~~v~~v 238 (258)
-..+.+.+++- +..+..+-..
T Consensus 475 ~~~kkLRk~LLe~~~I~aIIdL 496 (878)
T 3s1s_A 475 NESKAFREFLVGNFGLEHIFLY 496 (878)
T ss_dssp HHHHHHHHHHTTTTCEEEEEEC
T ss_pred hHHHHHHHHHHhCCCeEEEEEC
Confidence 01355666654 4455554444
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.86 E-value=5.8e-05 Score=68.52 Aligned_cols=91 Identities=20% Similarity=0.205 Sum_probs=67.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------------------CCceeeecCCCC-CCCCCCeeEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR--------------------PPLVIKGDFHAQ-PFDNGTFDFE 171 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~--------------------~~~~~~aDa~~L-Pf~d~SFD~V 171 (258)
+++.+||-||-|.|..++++.+. +..+|+.+|+.+. +..++.+|+.+. --.+++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 46789999999999999988875 4568999998531 124667776542 3356899999
Q ss_pred Eecccccc-----CChHHHHHHHHhcccCCcEEEEEec
Q 025071 172 FSNVFDHA-----LYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 172 ~s~~l~h~-----~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+....+.. ..-..+++.+.|.|+|||+++.+..
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 98533221 1235688999999999999998754
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.73 E-value=6.8e-06 Score=77.84 Aligned_cols=61 Identities=20% Similarity=0.308 Sum_probs=47.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------------CCceeeecCCCC-CC-CCCCeeEEEe
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------------PPLVIKGDFHAQ-PF-DNGTFDFEFS 173 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------------~~~~~~aDa~~L-Pf-~d~SFD~V~s 173 (258)
+.++.+|||+|||+|..+.+|++.+ .+|+|+|+++. ...++++|+.+. +. ++++||+|++
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred cCCCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 4458899999999999999998876 48999998641 124678888763 43 4578999999
Q ss_pred c
Q 025071 174 N 174 (258)
Q Consensus 174 ~ 174 (258)
+
T Consensus 170 D 170 (410)
T 3ll7_A 170 D 170 (410)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00017 Score=65.79 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHH-hcCCCCCCEEEEECC------CCCHHHHHHHhcCC--CcEEEEeCCCCC---CceeeecCCCCC
Q 025071 95 RKVRVFSRFFQDLKQ-RHFLFNESKALSIGA------RVGQEVAALKLVGV--SDSIGIDLVPRP---PLVIKGDFHAQP 162 (258)
Q Consensus 95 ~~~~~~~~~~~~L~~-~~~l~~~~~VLDIGc------GtG~~~~~L~~~g~--~~v~GvD~s~~~---~~~~~aDa~~LP 162 (258)
-.+..|.++.+.|.. .-.++.+.+|||+|+ -+|.. .+++.+. ..|+++|+.+.. ..++++|..++.
T Consensus 88 ~nv~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~~~IqGD~~~~~ 165 (344)
T 3r24_A 88 MNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVH 165 (344)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGEE
T ss_pred eeHHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCCeEEEccccccc
Confidence 345557777776633 224567899999996 66663 4444432 379999997643 346889976543
Q ss_pred CCCCCeeEEEec-c--c-ccc-------CC-hHHHHHHHHhcccCCcEEEEEec
Q 025071 163 FDNGTFDFEFSN-V--F-DHA-------LY-PWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 163 f~d~SFD~V~s~-~--l-~h~-------~~-p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
. ...||+|+|. + . -+. .. -+.++.=+.++|+|||.+++=+-
T Consensus 166 ~-~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVF 218 (344)
T 3r24_A 166 T-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 218 (344)
T ss_dssp E-SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred c-CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEe
Confidence 3 4789999994 1 1 111 11 12344445668999999988653
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00046 Score=62.15 Aligned_cols=102 Identities=11% Similarity=0.089 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHh----cC--CCcEEEEeCCCC--------------------
Q 025071 96 KVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKL----VG--VSDSIGIDLVPR-------------------- 149 (258)
Q Consensus 96 ~~~~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~----~g--~~~v~GvD~s~~-------------------- 149 (258)
+...+..+++.+.+. ..++.||++||..|..+..+++ .| ..+++++|....
T Consensus 90 r~~~L~~l~~~v~~~---~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~ 166 (282)
T 2wk1_A 90 RLENIRQCVEDVIGN---NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRR 166 (282)
T ss_dssp HHHHHHHHHHHHHHT---TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGG
T ss_pred HHHHHHHHHHHHHhc---CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccc
Confidence 334444455544432 2457999999999998877653 22 357999995310
Q ss_pred -----------------------CCceeeecCC-CCC-CCCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEE
Q 025071 150 -----------------------PPLVIKGDFH-AQP-FDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 150 -----------------------~~~~~~aDa~-~LP-f~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii 201 (258)
...++.||+. .|| +++++||+|+..+ ++...-..++..+.+.|+|||++++
T Consensus 167 ~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDa-D~y~~~~~~Le~~~p~L~pGGiIv~ 242 (282)
T 2wk1_A 167 NSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG-DLYESTWDTLTNLYPKVSVGGYVIV 242 (282)
T ss_dssp HHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECC-CSHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC-CccccHHHHHHHHHhhcCCCEEEEE
Confidence 1225566653 344 3467999999852 2222224678899999999998888
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0012 Score=56.67 Aligned_cols=81 Identities=6% Similarity=-0.036 Sum_probs=54.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC--------------C----CCceeeecCCC---------------C
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVP--------------R----PPLVIKGDFHA---------------Q 161 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~--------------~----~~~~~~aDa~~---------------L 161 (258)
+..+||++||| ..+..+++....+|+.+|.++ . ...++.+|+.+ +
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 56799999985 566677764225899999752 1 12356677543 2
Q ss_pred C--------C-CCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEE
Q 025071 162 P--------F-DNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 162 P--------f-~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii 201 (258)
| . .+++||+|+..+ ......+.++.+.|+|||++++
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg----~k~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDG----RFRVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECS----SSHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHhhhhhccccCCCCCEEEEeC----CCchhHHHHHHHhcCCCeEEEE
Confidence 3 2 247899999853 1123556778899999999966
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00021 Score=66.45 Aligned_cols=91 Identities=21% Similarity=0.149 Sum_probs=63.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCC-CcEEEEeCCCCC---------------------CceeeecCCCCC-CCCCCe
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGV-SDSIGIDLVPRP---------------------PLVIKGDFHAQP-FDNGTF 168 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~~---------------------~~~~~aDa~~LP-f~d~SF 168 (258)
...+|.+|||++||+|.-+..|++.+. ..|+++|+++.. ..+...|+..++ +..+.|
T Consensus 145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f 224 (359)
T 4fzv_A 145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY 224 (359)
T ss_dssp CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence 456889999999999999888887653 369999986421 124556666654 456799
Q ss_pred eEEEeccc---------c------ccCCh----------HHHHHHHHhcccCCcEEEEE
Q 025071 169 DFEFSNVF---------D------HALYP----------WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 169 D~V~s~~l---------~------h~~~p----------~~~l~Ei~RVLKPGG~lii~ 202 (258)
|.|+..+= . +...+ .+.+....+.|||||+++-.
T Consensus 225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYs 283 (359)
T 4fzv_A 225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYS 283 (359)
T ss_dssp EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 99997311 1 00111 24567888999999998775
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0021 Score=62.39 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=77.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHh----cC----------CCcEEEEeCCCC---------------CCceeeecCCCCCCC
Q 025071 114 FNESKALSIGARVGQEVAALKL----VG----------VSDSIGIDLVPR---------------PPLVIKGDFHAQPFD 164 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~----~g----------~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~ 164 (258)
.++.+|+|-+||+|.+.....+ .+ ...++|+|+.+. ...+..+|....|+.
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~ 295 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLR 295 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGG
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchh
Confidence 3466899999999998654322 11 125899998642 234566776665543
Q ss_pred ----CCCeeEEEec---ccccc-------C------Ch-HHHHHHHHhccc-------CCcEEEEEeccccCcCcCCCCC
Q 025071 165 ----NGTFDFEFSN---VFDHA-------L------YP-WKFVGEIERTLK-------PAGVCVLHVALSRRADKYSAND 216 (258)
Q Consensus 165 ----d~SFD~V~s~---~l~h~-------~------~p-~~~l~Ei~RVLK-------PGG~lii~v~~~~~~~~y~~~~ 216 (258)
+..||+|++| ...+. . +. ..++..+.+.|| |||++++++|..- -+. ..
T Consensus 296 ~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~---Lf~-~~ 371 (530)
T 3ufb_A 296 EMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGT---LFS-DG 371 (530)
T ss_dssp GCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHH---HHC-CT
T ss_pred hhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchh---hhc-cc
Confidence 3579999997 21110 0 11 235677888887 7999999987421 000 00
Q ss_pred CCChhHHHHHh-hcCceEEeeeec-----C-CCCeE-EEEEEeCCc
Q 025071 217 LFSVKPLVKLF-RESELVAVRKVD-----G-FGLDT-EVVFRKKKK 254 (258)
Q Consensus 217 ~~s~~~l~~lf-~~~~~~~v~~v~-----g-~~l~~-~~~f~K~~~ 254 (258)
....+.+.+ +++.+..+-... + .+.+| .++|+|.+.
T Consensus 372 --~~~~iRk~Lle~~~l~aII~LP~~~F~~~tgi~t~Il~~~K~~~ 415 (530)
T 3ufb_A 372 --ISARIKEELLKNFNLHTIVRLPEGVFAPYTDIAGNLLFFDRSGP 415 (530)
T ss_dssp --HHHHHHHHHHHHSEEEEEEECCTTTTTTTCCCCEEEEEEESSSC
T ss_pred --hHHHHHHHHhhcCEEEEEEECCcccCcCCCCCcEEEEEEECCCC
Confidence 123455544 455444444431 2 34555 677777543
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00025 Score=66.53 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=61.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------C--------------CceeeecCCCC----CCCCC
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------P--------------PLVIKGDFHAQ----PFDNG 166 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------~--------------~~~~~aDa~~L----Pf~d~ 166 (258)
.++.+||-||-|.|..++++.+.+...|+.||+.+. + ..++.+|+.+. +=.++
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 356899999999999999988766678999998531 0 12344554311 11346
Q ss_pred CeeEEEecccccc--CCh---------HHHHHHHHhcccCCcEEEEEe
Q 025071 167 TFDFEFSNVFDHA--LYP---------WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 167 SFD~V~s~~l~h~--~~p---------~~~l~Ei~RVLKPGG~lii~v 203 (258)
.||+|+....+.. .+| ..+++.+.|+|+|||+++.+.
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 8999998644321 122 356788999999999998864
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00066 Score=61.33 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=31.1
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
.+.+++.+||++||.|..+.++.+.+ ..|+|+|.++
T Consensus 19 ~~~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp 54 (285)
T 1wg8_A 19 AVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDP 54 (285)
T ss_dssp TCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCH
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCH
Confidence 46778999999999999999998764 4899999865
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0045 Score=56.42 Aligned_cols=117 Identities=21% Similarity=0.211 Sum_probs=73.5
Q ss_pred CCEEEEECCCCCHHHHH-HH---hcC-CC--cEEEEeCCCC------CC-----------------------ceeeecCC
Q 025071 116 ESKALSIGARVGQEVAA-LK---LVG-VS--DSIGIDLVPR------PP-----------------------LVIKGDFH 159 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~-L~---~~g-~~--~v~GvD~s~~------~~-----------------------~~~~aDa~ 159 (258)
.-+|||+|-|||.++.. +. +.+ .. +.+.+|..+. +. .+..+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 34799999999997532 21 222 12 3567774221 00 13445653
Q ss_pred C-CC-CCCCCeeEEEeccccccCChH----HHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 160 A-QP-FDNGTFDFEFSNVFDHALYPW----KFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 160 ~-LP-f~d~SFD~V~s~~l~h~~~p~----~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
+ +| +++..||+|+...|.-..+|+ .++++|+|.++|||.++-.. +...+.+-+.++|+.
T Consensus 177 ~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt---------------aag~VRR~L~~aGF~ 241 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS---------------SSLSVRKSLLTLGFK 241 (308)
T ss_dssp HHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC---------------CCHHHHHHHHHTTCE
T ss_pred HHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe---------------CcHHHHHHHHHCCCE
Confidence 2 33 345689999997776556664 68899999999999876421 235677889999987
Q ss_pred EeeeecCCCCeEEEE
Q 025071 234 AVRKVDGFGLDTEVV 248 (258)
Q Consensus 234 ~v~~v~g~~l~~~~~ 248 (258)
|..+.|+|-+++++
T Consensus 242 -V~k~~G~g~KReml 255 (308)
T 3vyw_A 242 -VGSSREIGRKRKGT 255 (308)
T ss_dssp -EEEEECC---CEEE
T ss_pred -EEecCCCCCCCcee
Confidence 45567888886544
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0018 Score=57.75 Aligned_cols=46 Identities=24% Similarity=0.282 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
..+++.+++... .++..|||++||+|..+.++++.|. +++|+|+++
T Consensus 222 ~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~ 267 (297)
T 2zig_A 222 LELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVP 267 (297)
T ss_dssp HHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCH
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCH
Confidence 356666666543 5788999999999999999888884 899999875
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.015 Score=65.87 Aligned_cols=89 Identities=26% Similarity=0.256 Sum_probs=38.4
Q ss_pred CCCEEEEECCCCCHHHHHHH-hcC-----CCcEEEEeCCCCCC-----c-----eeee--cCCC-CCCCCCCeeEEEe-c
Q 025071 115 NESKALSIGARVGQEVAALK-LVG-----VSDSIGIDLVPRPP-----L-----VIKG--DFHA-QPFDNGTFDFEFS-N 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~-~~g-----~~~v~GvD~s~~~~-----~-----~~~a--Da~~-LPf~d~SFD~V~s-~ 174 (258)
+..+||+||.|+|..+..+. ..+ +.+.+-.|+++... . +... |... -+|..++||+|++ +
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 45799999999998644322 221 23466778764311 1 1111 2222 2567788999998 4
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+++...+....++++.+.|||||++++..
T Consensus 1320 vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1320 ALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp C--------------------CCEEEEEE
T ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 67655677888999999999999988764
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.052 Score=49.28 Aligned_cols=91 Identities=16% Similarity=0.129 Sum_probs=56.8
Q ss_pred HHHhcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCC-----CCCCCCeeE
Q 025071 107 LKQRHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQ-----PFDNGTFDF 170 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~L-----Pf~d~SFD~ 170 (258)
+.+...+.++.+||-+|||. |..+..+++ .|...|+++|.++... .++..+..++ ...++.+|+
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 182 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcE
Confidence 33344577889999999875 666666665 5765699999764211 1111111110 011236999
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+..+= ....+++..+.|+|||++++.
T Consensus 262 vid~~g-----~~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 262 ALESTG-----SPEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp EEECSC-----CHHHHHHHHHTEEEEEEEEEC
T ss_pred EEECCC-----CHHHHHHHHHHHhcCCEEEEe
Confidence 987421 134568899999999998775
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.092 Score=48.22 Aligned_cols=92 Identities=17% Similarity=0.098 Sum_probs=57.6
Q ss_pred hcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCc------eeeecCCCCCC---------CCCCeeEEE
Q 025071 110 RHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPL------VIKGDFHAQPF---------DNGTFDFEF 172 (258)
Q Consensus 110 ~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~------~~~aDa~~LPf---------~d~SFD~V~ 172 (258)
...+.++.+||-+|||. |..+..+++ .|..+|+++|.++.... ....|..+-.+ ....||+|+
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvi 259 (398)
T 2dph_A 180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGV 259 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEE
Confidence 34577899999999976 777666665 57658999997642100 01112221111 122699999
Q ss_pred ecc-cc---------ccCChHHHHHHHHhcccCCcEEEEE
Q 025071 173 SNV-FD---------HALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~~-l~---------h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..+ -. |. .+...+++..+.|+|||++++.
T Consensus 260 d~~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 260 DAVGFEAHGLGDEANTE-TPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp ECSCTTCBCSGGGTTSB-CTTHHHHHHHHHEEEEEEEECC
T ss_pred ECCCCcccccccccccc-ccHHHHHHHHHHHhcCCEEEEe
Confidence 752 11 11 2345678999999999998764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.86 E-value=0.0086 Score=53.34 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=46.2
Q ss_pred ceeeecCCC-CC-CCCCCeeEEEec--cccc--c-----------------CChHHHHHHHHhcccCCcEEEEEeccccC
Q 025071 152 LVIKGDFHA-QP-FDNGTFDFEFSN--VFDH--A-----------------LYPWKFVGEIERTLKPAGVCVLHVALSRR 208 (258)
Q Consensus 152 ~~~~aDa~~-LP-f~d~SFD~V~s~--~l~h--~-----------------~~p~~~l~Ei~RVLKPGG~lii~v~~~~~ 208 (258)
.++++|+.+ ++ +++++||+|+++ .... . ......++|+.|+|||||.+++.+.....
T Consensus 23 ~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~~ 102 (297)
T 2zig_A 23 RLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVAV 102 (297)
T ss_dssp EEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEEE
T ss_pred EEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCcc
Confidence 356677654 32 467899999986 2111 0 01134678999999999999887652100
Q ss_pred c-CcCCCCCCCCh-hHHHHHhhcCceE
Q 025071 209 A-DKYSANDLFSV-KPLVKLFRESELV 233 (258)
Q Consensus 209 ~-~~y~~~~~~s~-~~l~~lf~~~~~~ 233 (258)
. ..+.....+.. ..+..++++.|+.
T Consensus 103 ~~~~~g~~~~~~~~~~l~~~~~~~Gf~ 129 (297)
T 2zig_A 103 ARRRFGRHLVFPLHADIQVRCRKLGFD 129 (297)
T ss_dssp ECC----EEEECHHHHHHHHHHHTTCE
T ss_pred ccccCCcccccccHHHHHHHHHHcCCe
Confidence 0 00000111122 4577788888754
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.018 Score=52.14 Aligned_cols=81 Identities=15% Similarity=0.297 Sum_probs=48.4
Q ss_pred ceeeecCCC-CC-CCCCCeeEEEec---cccc------------cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCC
Q 025071 152 LVIKGDFHA-QP-FDNGTFDFEFSN---VFDH------------ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSA 214 (258)
Q Consensus 152 ~~~~aDa~~-LP-f~d~SFD~V~s~---~l~h------------~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~ 214 (258)
.++++|+.+ |+ +++++||+|++. .... .......++|+.|+|||||.+++.+...... ....
T Consensus 16 ~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~-g~~~ 94 (323)
T 1boo_A 16 SMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMK-GVPA 94 (323)
T ss_dssp EEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEET-TEEE
T ss_pred eEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecC-CCcc
Confidence 456777643 33 568899999985 1110 0123567899999999999999976521000 0000
Q ss_pred CCCCChhHHHHHhhcCceE
Q 025071 215 NDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 215 ~~~~s~~~l~~lf~~~~~~ 233 (258)
..++..+.+..++.+.|+.
T Consensus 95 ~~~~~~~~i~~~~~~~Gf~ 113 (323)
T 1boo_A 95 RSIYNFRVLIRMIDEVGFF 113 (323)
T ss_dssp ECCHHHHHHHHHHHTTCCE
T ss_pred cccchHHHHHHHHHhCCCE
Confidence 1123345666777777753
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.044 Score=47.76 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
..+++.+++.. ..++..|||..||+|..+.+..+.| .+++|+|+++
T Consensus 199 ~~l~~~~i~~~-~~~~~~vlD~f~GsGtt~~~a~~~g-r~~ig~e~~~ 244 (260)
T 1g60_A 199 RDLIERIIRAS-SNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNA 244 (260)
T ss_dssp HHHHHHHHHHH-CCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCH
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCH
Confidence 35666666544 3678899999999999998888887 4899999864
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.054 Score=48.95 Aligned_cols=87 Identities=15% Similarity=0.010 Sum_probs=54.3
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCC---------Cceeeec---CCC----C-CCCCCCeeEE
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRP---------PLVIKGD---FHA----Q-PFDNGTFDFE 171 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~---------~~~~~aD---a~~----L-Pf~d~SFD~V 171 (258)
..+.++.+||-+|+|. |..+..+++ .|..+|+++|.++.. ..++..+ ..+ + ...++.+|+|
T Consensus 167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~v 246 (356)
T 1pl8_A 167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVT 246 (356)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEE
Confidence 4577899999999875 666666665 576589999976421 1111111 000 0 0001469999
Q ss_pred EeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 172 FSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 172 ~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+..+= -...+.+..++|+|||+++..
T Consensus 247 id~~g-----~~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 247 IECTG-----AEASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp EECSC-----CHHHHHHHHHHSCTTCEEEEC
T ss_pred EECCC-----ChHHHHHHHHHhcCCCEEEEE
Confidence 87421 123567889999999998875
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.045 Score=50.20 Aligned_cols=92 Identities=18% Similarity=0.114 Sum_probs=58.6
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCc------eeeecCCCCC-C--------CCCCeeEEEe
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPL------VIKGDFHAQP-F--------DNGTFDFEFS 173 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~------~~~aDa~~LP-f--------~d~SFD~V~s 173 (258)
..+.++.+||-+|||. |..+..+++ .|...|+++|.++.... ....|..+-+ + ....+|+|+.
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid 260 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVD 260 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEE
Confidence 4567899999999875 666666665 57657999997642110 0011211111 1 1236999997
Q ss_pred c-cc---------cccCChHHHHHHHHhcccCCcEEEEE
Q 025071 174 N-VF---------DHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~-~l---------~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
. .- .|..++...+++..+.|++||++++.
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 261 AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 4 11 23445666789999999999998764
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.11 Score=47.19 Aligned_cols=91 Identities=20% Similarity=0.129 Sum_probs=55.7
Q ss_pred HHHhcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCC--CCC-------CCCCe
Q 025071 107 LKQRHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHA--QPF-------DNGTF 168 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~--LPf-------~d~SF 168 (258)
+.+...+.++.+||-+|+|. |..+..+++ .|...|+++|.++..... ...|..+ -.+ .++.+
T Consensus 184 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 263 (374)
T 1cdo_A 184 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV 263 (374)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCC
Confidence 33344567889999999864 555555554 576579999976532110 1111111 011 12369
Q ss_pred eEEEeccccccCChHHHHHHHHhcccCC-cEEEEE
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTLKPA-GVCVLH 202 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVLKPG-G~lii~ 202 (258)
|+|+.++= ....+++..+.|+|| |++++.
T Consensus 264 D~vid~~g-----~~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 264 DFSLECVG-----NVGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp SEEEECSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCC-----CHHHHHHHHHHhhcCCcEEEEE
Confidence 99987421 134568899999999 998775
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.33 E-value=0.13 Score=46.57 Aligned_cols=91 Identities=20% Similarity=0.153 Sum_probs=55.6
Q ss_pred HHHhcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCC--CCC-------CCCCe
Q 025071 107 LKQRHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHA--QPF-------DNGTF 168 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~--LPf-------~d~SF 168 (258)
+.+...+.++.+||-+|+|. |..+..+++ .|...|+++|.++..... ...|..+ -.+ .++.+
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 262 (374)
T 2jhf_A 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGV 262 (374)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCC
Confidence 33344567889999999864 555555554 575579999976432110 1111111 011 12369
Q ss_pred eEEEeccccccCChHHHHHHHHhcccCC-cEEEEE
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTLKPA-GVCVLH 202 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVLKPG-G~lii~ 202 (258)
|+|+.++= ....+++..+.|+|| |++++.
T Consensus 263 D~vid~~g-----~~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 263 DFSFEVIG-----RLDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp SEEEECSC-----CHHHHHHHHHHBCTTTCEEEEC
T ss_pred cEEEECCC-----CHHHHHHHHHHhhcCCcEEEEe
Confidence 99987421 134568899999999 998775
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.13 Score=46.62 Aligned_cols=91 Identities=15% Similarity=0.037 Sum_probs=55.7
Q ss_pred HHHhcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCC--CCC-------CCCCe
Q 025071 107 LKQRHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHA--QPF-------DNGTF 168 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~--LPf-------~d~SF 168 (258)
+.+...+.++.+||-+|+|. |..+..+++ .|...|+++|.++..... ...|..+ -.+ .++.+
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~ 262 (373)
T 1p0f_A 183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 262 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 33334577889999999864 555555554 576579999976532110 1111111 011 12379
Q ss_pred eEEEeccccccCChHHHHHHHHhcccCC-cEEEEE
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTLKPA-GVCVLH 202 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVLKPG-G~lii~ 202 (258)
|+|+..+= -...+++..+.|+|| |+++..
T Consensus 263 Dvvid~~g-----~~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 263 DYAVECAG-----RIETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp SEEEECSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCC-----CHHHHHHHHHHHhcCCCEEEEE
Confidence 99997421 134568899999999 998775
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.16 Score=46.17 Aligned_cols=91 Identities=14% Similarity=0.060 Sum_probs=55.6
Q ss_pred HHHhcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCC--CCC-------CCCCe
Q 025071 107 LKQRHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHA--QPF-------DNGTF 168 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~--LPf-------~d~SF 168 (258)
+.+...+.++.+||-+|+|. |..+..+++ .|..+|+++|.++..... ...|..+ -.+ .++.+
T Consensus 187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV 266 (376)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCc
Confidence 33344577889999999863 555555554 576579999976532110 1111111 011 12369
Q ss_pred eEEEeccccccCChHHHHHHHHhcccCC-cEEEEE
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTLKPA-GVCVLH 202 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVLKPG-G~lii~ 202 (258)
|+|+..+= -...+++..+.|+|| |++++.
T Consensus 267 Dvvid~~G-----~~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 267 DYSLDCAG-----TAQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp SEEEESSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred cEEEECCC-----CHHHHHHHHHHhhcCCCEEEEE
Confidence 99987421 134568999999999 998764
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.13 Score=46.52 Aligned_cols=91 Identities=20% Similarity=0.143 Sum_probs=55.6
Q ss_pred HHHhcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCC--CCC-------CCCCe
Q 025071 107 LKQRHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHA--QPF-------DNGTF 168 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~--LPf-------~d~SF 168 (258)
+.+...+.++.+||-+|+|. |..+..+++ .|...|+++|.++..... ...|..+ -.+ .++.+
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 261 (373)
T 2fzw_A 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 261 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCC
Confidence 33344567889999999864 555555554 576579999976532110 0111111 011 12369
Q ss_pred eEEEeccccccCChHHHHHHHHhcccCC-cEEEEE
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTLKPA-GVCVLH 202 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVLKPG-G~lii~ 202 (258)
|+|+.++= ....+++..+.|+|| |++++.
T Consensus 262 D~vid~~g-----~~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 262 DYSFECIG-----NVKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp SEEEECSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCC-----cHHHHHHHHHhhccCCcEEEEE
Confidence 99987421 134568899999999 998775
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.25 Score=44.93 Aligned_cols=88 Identities=16% Similarity=0.063 Sum_probs=55.5
Q ss_pred hcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCC-------C-CCCCCCCeeE
Q 025071 110 RHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFH-------A-QPFDNGTFDF 170 (258)
Q Consensus 110 ~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~-------~-LPf~d~SFD~ 170 (258)
...+.++.+||-+|+|. |..+..+++ .|...|+++|.++... .++..... + ....++.+|+
T Consensus 177 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dv 256 (370)
T 4ej6_A 177 LSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDV 256 (370)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCE
Confidence 34577899999999864 555555654 5766899999764211 11111000 0 0122347999
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+.++ --...+++..+.|+|||++++.
T Consensus 257 vid~~-----G~~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 257 VIECA-----GVAETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp EEECS-----CCHHHHHHHHHHEEEEEEEEEC
T ss_pred EEECC-----CCHHHHHHHHHHhccCCEEEEE
Confidence 99742 1134578999999999998875
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.15 Score=46.43 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=56.3
Q ss_pred HHHhcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCCC-------CCCCe
Q 025071 107 LKQRHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQPF-------DNGTF 168 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LPf-------~d~SF 168 (258)
+.....+.++.+||-+|+|. |..+..+++ .|..+|+++|.++... .++......-.+ .++.+
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~ 264 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGV 264 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCC
Confidence 33445577889999999863 555555554 5766899999765321 111111001111 12379
Q ss_pred eEEEeccccccCChHHHHHHHHhcccCC-cEEEEE
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTLKPA-GVCVLH 202 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVLKPG-G~lii~ 202 (258)
|+|+..+= . ...+.+..+.|+|| |++++.
T Consensus 265 D~vid~~g----~-~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 265 DYSFECIG----N-VSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp SEEEECSC----C-HHHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCC----C-HHHHHHHHHHhhccCCEEEEE
Confidence 99997421 1 34568899999997 998775
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.21 Score=44.15 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=52.9
Q ss_pred HhcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCc---------eeeecCCCCCCCCCCeeEEEecccc
Q 025071 109 QRHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPL---------VIKGDFHAQPFDNGTFDFEFSNVFD 177 (258)
Q Consensus 109 ~~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~---------~~~aDa~~LPf~d~SFD~V~s~~l~ 177 (258)
+...+.++.+||-+|+|. |..+..+++ .|. +|+++| ++.... ++. |.+++ .+.+|+|+.++=
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~-d~~~v---~~g~Dvv~d~~g- 208 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYR-EPSQV---TQKYFAIFDAVN- 208 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEES-SGGGC---CSCEEEEECC---
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEc-CHHHh---CCCccEEEECCC-
Confidence 445677899999999963 556666654 576 899999 654321 221 33334 567999997421
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.....+..+.|+|||+++..
T Consensus 209 -----~~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 209 -----SQNAAALVPSLKANGHIICI 228 (315)
T ss_dssp ----------TTGGGEEEEEEEEEE
T ss_pred -----chhHHHHHHHhcCCCEEEEE
Confidence 11125678999999998876
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.34 Score=43.38 Aligned_cols=81 Identities=14% Similarity=0.037 Sum_probs=53.7
Q ss_pred CCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCCCCCCCeeEEEeccccccC
Q 025071 112 FLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQPFDNGTFDFEFSNVFDHAL 180 (258)
Q Consensus 112 ~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LPf~d~SFD~V~s~~l~h~~ 180 (258)
.+.++.+||-+|+|. |..+..+++ .|. +|+++|.++... .++ .+.+.+ . +.+|+|+..+= .
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~-~~~~~~--~-~~~D~vid~~g-~-- 244 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFY-TDPKQC--K-EELDFIISTIP-T-- 244 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEE-SSGGGC--C-SCEEEEEECCC-S--
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeec-CCHHHH--h-cCCCEEEECCC-c--
Confidence 567899999999875 666666655 575 899999875432 122 222222 2 27999997421 1
Q ss_pred ChHHHHHHHHhcccCCcEEEEE
Q 025071 181 YPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
...+.+..+.|+|||++++.
T Consensus 245 --~~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 245 --HYDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp --CCCHHHHHTTEEEEEEEEEC
T ss_pred --HHHHHHHHHHHhcCCEEEEE
Confidence 01357889999999998886
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.16 Score=45.75 Aligned_cols=88 Identities=13% Similarity=-0.020 Sum_probs=54.2
Q ss_pred hcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC--------ceeeecCCC---CC--------CCCCCe
Q 025071 110 RHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP--------LVIKGDFHA---QP--------FDNGTF 168 (258)
Q Consensus 110 ~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~--------~~~~aDa~~---LP--------f~d~SF 168 (258)
...+.++.+||-+|+|. |..+..+++ .|...|+++|.++... .++...... -. .....+
T Consensus 174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~ 253 (363)
T 3m6i_A 174 RAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEP 253 (363)
T ss_dssp HHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCC
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCC
Confidence 34577899999999864 556666655 5765599999764211 011000000 00 123468
Q ss_pred eEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+|+..+= -...+.+..+.|+|||++++.
T Consensus 254 Dvvid~~g-----~~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 254 AVALECTG-----VESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp SEEEECSC-----CHHHHHHHHHHSCTTCEEEEC
T ss_pred CEEEECCC-----ChHHHHHHHHHhcCCCEEEEE
Confidence 99987421 123568899999999998875
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=91.97 E-value=0.37 Score=43.20 Aligned_cols=89 Identities=10% Similarity=-0.088 Sum_probs=55.1
Q ss_pred HhcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCCC--------CCCCeeEE
Q 025071 109 QRHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQPF--------DNGTFDFE 171 (258)
Q Consensus 109 ~~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf--------~d~SFD~V 171 (258)
+...+.++.+||-+|+|. |..+..+++ .|...|+++|.++.... -...|..+-.+ ....+|+|
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v 239 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKV 239 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEE
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEE
Confidence 344577899999999874 556666665 57657999997642110 01111111111 12369999
Q ss_pred EeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 172 FSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 172 ~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+..+= . ...+++..+.|+|||+++..
T Consensus 240 ~d~~g----~-~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 240 VIAGG----D-VHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp EECSS----C-TTHHHHHHHHEEEEEEEEEC
T ss_pred EECCC----C-hHHHHHHHHHHhcCCEEEEe
Confidence 97421 1 13468899999999998875
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.29 Score=43.71 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=55.2
Q ss_pred HHHHhcCCCCCCEEEEECCC--CCHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCCCCC--------CCCC
Q 025071 106 DLKQRHFLFNESKALSIGAR--VGQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHAQPF--------DNGT 167 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcG--tG~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~LPf--------~d~S 167 (258)
.+.+...+.++.+||-+||| .|..+..+++ .|. +|+++|.++..... ...|...-.+ ....
T Consensus 135 ~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g 213 (340)
T 3gms_A 135 TCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIG 213 (340)
T ss_dssp HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred HHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCC
Confidence 34444567889999999997 4555555554 676 89999986543210 1112211111 1247
Q ss_pred eeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 168 FDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 168 FD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+|+.++= .....+..+.|+|||+++..
T Consensus 214 ~Dvvid~~g------~~~~~~~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 214 ADAAIDSIG------GPDGNELAFSLRPNGHFLTI 242 (340)
T ss_dssp EEEEEESSC------HHHHHHHHHTEEEEEEEEEC
T ss_pred CcEEEECCC------ChhHHHHHHHhcCCCEEEEE
Confidence 999997521 12234566899999998875
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.42 Score=43.33 Aligned_cols=81 Identities=25% Similarity=0.244 Sum_probs=52.1
Q ss_pred CCCEEEEEC-CC-CCHHHHHHHhc-CCCcEEEEeCCCCCC---------ceeee------cCCCCCCCCCCeeEEEeccc
Q 025071 115 NESKALSIG-AR-VGQEVAALKLV-GVSDSIGIDLVPRPP---------LVIKG------DFHAQPFDNGTFDFEFSNVF 176 (258)
Q Consensus 115 ~~~~VLDIG-cG-tG~~~~~L~~~-g~~~v~GvD~s~~~~---------~~~~a------Da~~LPf~d~SFD~V~s~~l 176 (258)
++.+||=+| +| .|..+..+++. +..+|+++|.++... .++.. ...++ ..+.+|+|+.++
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~--~~~g~Dvvid~~- 247 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAAL--GLGAPAFVFSTT- 247 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTT--CSCCEEEEEECS-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHh--cCCCceEEEECC-
Confidence 678999998 55 46677777764 445899999753211 11110 01112 335799998742
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEE
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
--...+++..+.|+|||++++.
T Consensus 248 ----g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 248 ----HTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp ----CHHHHHHHHHHHSCTTCEEEEC
T ss_pred ----CchhhHHHHHHHhcCCCEEEEE
Confidence 1234568899999999999875
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=91.06 E-value=0.49 Score=38.52 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=51.7
Q ss_pred cCCCCCCEEEEECC--CCCHHHHHH-HhcCCCcEEEEeCCCCCC-------ceeeecCCCCCC--------CCCCeeEEE
Q 025071 111 HFLFNESKALSIGA--RVGQEVAAL-KLVGVSDSIGIDLVPRPP-------LVIKGDFHAQPF--------DNGTFDFEF 172 (258)
Q Consensus 111 ~~l~~~~~VLDIGc--GtG~~~~~L-~~~g~~~v~GvD~s~~~~-------~~~~aDa~~LPf--------~d~SFD~V~ 172 (258)
..+.++.+||..|+ |.|..+..+ +..|. +|+++|.++... .-...|..+-.+ ....+|+|+
T Consensus 34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi 112 (198)
T 1pqw_A 34 GRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVL 112 (198)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEE
T ss_pred hCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEE
Confidence 45678899999995 345544443 34675 799999753210 001112221111 124699999
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.++= ...+++..+.|+|||+++..
T Consensus 113 ~~~g------~~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 113 NSLA------GEAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp ECCC------THHHHHHHHTEEEEEEEEEC
T ss_pred ECCc------hHHHHHHHHHhccCCEEEEE
Confidence 7531 14568999999999998875
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=0.24 Score=44.14 Aligned_cols=86 Identities=9% Similarity=-0.008 Sum_probs=54.8
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCCC------CCCCeeEEEecc
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQPF------DNGTFDFEFSNV 175 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf------~d~SFD~V~s~~ 175 (258)
..+.++.+||-.|||. |..+..+++ .|. +|+++|.++.... -...|..+-.+ ..+.+|+|+.++
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~ 240 (340)
T 3s2e_A 162 TDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTA 240 (340)
T ss_dssp TTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeC
Confidence 4567889999999975 777766665 576 8999997642110 01111111111 013689888742
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
- -...+++..+.|+|||+++..
T Consensus 241 g-----~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 241 V-----SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp C-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred C-----CHHHHHHHHHHhccCCEEEEe
Confidence 1 134568899999999998875
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=90.96 E-value=0.31 Score=44.93 Aligned_cols=47 Identities=19% Similarity=0.082 Sum_probs=35.2
Q ss_pred CCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC------------CCCceeeecCCCCC
Q 025071 116 ESKALSIGARVGQEVAALKLV-GVSDSIGIDLVP------------RPPLVIKGDFHAQP 162 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~------------~~~~~~~aDa~~LP 162 (258)
+..|||||.|.|.++..|.+. ...+|+++++.+ ....++.+|+..+.
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWS 118 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHH
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccchh
Confidence 578999999999999999875 235799999752 12346778885543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=90.93 E-value=0.28 Score=45.40 Aligned_cols=122 Identities=11% Similarity=0.057 Sum_probs=71.3
Q ss_pred CEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------C-CceeeecCCCCCC--------CCCCeeEEEec----
Q 025071 117 SKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------P-PLVIKGDFHAQPF--------DNGTFDFEFSN---- 174 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------~-~~~~~aDa~~LPf--------~d~SFD~V~s~---- 174 (258)
.+++|+-||.|.+...+.+.|+..|.++|+.+. + ..++.+|+.++.. ....+|+|+.+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPCQ 82 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQ 82 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCCC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCCC
Confidence 479999999999999999889877889998642 1 2356788777642 34679999974
Q ss_pred cccc-----cCChH-HHHH---HHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEE--eeeec--CC
Q 025071 175 VFDH-----ALYPW-KFVG---EIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVA--VRKVD--GF 241 (258)
Q Consensus 175 ~l~h-----~~~p~-~~l~---Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~--v~~v~--g~ 241 (258)
.+.. ..++. ..+. ++.+.+||.-.++=-|+.- .+.+...-.+.+. .|.+.|..- ...++ .+
T Consensus 83 ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl-----~s~~~~~~~~~i~-~l~~~GY~v~~~~vl~a~dy 156 (376)
T 3g7u_A 83 GFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENVPGI-----MQEKYSGIRNKAF-NLVSGDYDILDPIKVKASDY 156 (376)
T ss_dssp TTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEECTTT-----TCGGGHHHHHHHH-HHHHTTEEECCCEEEEGGGG
T ss_pred CcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecchHh-----hccCcHHHHHHHH-HHHcCCCccCcEEEEEHhhC
Confidence 2221 11222 2233 4555567743333323311 0111111245666 788887643 23333 56
Q ss_pred CCe
Q 025071 242 GLD 244 (258)
Q Consensus 242 ~l~ 244 (258)
|.+
T Consensus 157 GvP 159 (376)
T 3g7u_A 157 GAP 159 (376)
T ss_dssp TCS
T ss_pred CCC
Confidence 676
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=90.79 E-value=0.16 Score=45.64 Aligned_cols=90 Identities=11% Similarity=-0.051 Sum_probs=58.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCC-CC---CCCCCeeEEEec-cc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHA-QP---FDNGTFDFEFSN-VF 176 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~-LP---f~d~SFD~V~s~-~l 176 (258)
++..+||+=+|+|.++..+.+.+ .+++-+|.++. ...+.+.|+.+ +. -+...||+|+.. -.
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred cCCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 35568999999999998776644 78999997531 12355666432 21 123579999996 33
Q ss_pred cccCChHHHHHHHHh--cccCCcEEEEEecc
Q 025071 177 DHALYPWKFVGEIER--TLKPAGVCVLHVAL 205 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~R--VLKPGG~lii~v~~ 205 (258)
+.-.+-.++++.+.+ .+.|+|+++++.|.
T Consensus 170 e~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi 200 (283)
T 2oo3_A 170 ERKEEYKEIPYAIKNAYSKFSTGLYCVWYPV 200 (283)
T ss_dssp CSTTHHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CCCcHHHHHHHHHHHhCccCCCeEEEEEEec
Confidence 322233344444443 56799999999874
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.79 E-value=0.29 Score=43.89 Aligned_cols=84 Identities=13% Similarity=0.001 Sum_probs=53.1
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCC---------CceeeecCCC-CCC--------C---CCC
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRP---------PLVIKGDFHA-QPF--------D---NGT 167 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~---------~~~~~aDa~~-LPf--------~---d~S 167 (258)
..+.++.+||-+|+|. |..+..+++ .|. +|+++|.++.. ..++ |..+ -.+ . .+.
T Consensus 164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~--~~~~~~~~~~~i~~~~~~~~g~g 240 (352)
T 1e3j_A 164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTL--VVDPAKEEESSIIERIRSAIGDL 240 (352)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEE--ECCTTTSCHHHHHHHHHHHSSSC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEE--cCcccccHHHHHHHHhccccCCC
Confidence 4567899999999874 555555554 575 59999975421 1111 1111 111 1 246
Q ss_pred eeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 168 FDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 168 FD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+|+.++= ....+++..+.|+|||+++..
T Consensus 241 ~D~vid~~g-----~~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 241 PNVTIDCSG-----NEKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp CSEEEECSC-----CHHHHHHHHHHSCTTCEEEEC
T ss_pred CCEEEECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 999987421 123568899999999998875
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=0.17 Score=44.95 Aligned_cols=92 Identities=18% Similarity=0.111 Sum_probs=56.4
Q ss_pred HHHHHHhcCCCCCCEEEEECC--CCCHHHHHHH-hcCCCcEEEEeCCCCCCc--------eeeecCCCCCC-------CC
Q 025071 104 FQDLKQRHFLFNESKALSIGA--RVGQEVAALK-LVGVSDSIGIDLVPRPPL--------VIKGDFHAQPF-------DN 165 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGc--GtG~~~~~L~-~~g~~~v~GvD~s~~~~~--------~~~aDa~~LPf-------~d 165 (258)
+..+.+...+.++.+||-.|| |.|..+..++ ..|. +|+++|.++.... -...|...-.+ ..
T Consensus 138 ~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 216 (336)
T 4b7c_A 138 YFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECP 216 (336)
T ss_dssp HHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCT
T ss_pred HHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcC
Confidence 333434456788999999998 3455555554 4676 8999997532110 01112111111 12
Q ss_pred CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 166 GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+.+|+|+.++= ...+.+..+.|+|||++++.
T Consensus 217 ~~~d~vi~~~g------~~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 217 KGIDVFFDNVG------GEILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp TCEEEEEESSC------HHHHHHHHTTEEEEEEEEEC
T ss_pred CCceEEEECCC------cchHHHHHHHHhhCCEEEEE
Confidence 46999987521 23578899999999998875
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.58 E-value=0.25 Score=45.60 Aligned_cols=45 Identities=11% Similarity=0.038 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCC
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVP 148 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~ 148 (258)
+++.++.-.+.+++.++|..||.|..+.++.+. | ...|+|+|..+
T Consensus 46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp 92 (347)
T 3tka_A 46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDP 92 (347)
T ss_dssp THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCH
T ss_pred HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCH
Confidence 334444445678899999999999999988764 3 35799999864
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=90.37 E-value=0.17 Score=44.89 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=53.8
Q ss_pred HHHhcCCCCCCEEEEECC--CCCHHHHHHH-hcCCCcEEEEeCCCCCC-------ceeeecCCC-CCC-------CCCCe
Q 025071 107 LKQRHFLFNESKALSIGA--RVGQEVAALK-LVGVSDSIGIDLVPRPP-------LVIKGDFHA-QPF-------DNGTF 168 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGc--GtG~~~~~L~-~~g~~~v~GvD~s~~~~-------~~~~aDa~~-LPf-------~d~SF 168 (258)
+.+...+.++.+||-.|| |.|..+..++ ..|. +|+++|.++... .-...|..+ -.+ ..+.+
T Consensus 137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~ 215 (333)
T 1v3u_A 137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGY 215 (333)
T ss_dssp HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCE
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCC
Confidence 333445678899999998 4455544443 4676 899999753210 001122221 010 11469
Q ss_pred eEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+++.++= ...+++..+.|+|||++++.
T Consensus 216 d~vi~~~g------~~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 216 DCYFDNVG------GEFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp EEEEESSC------HHHHHHHHTTEEEEEEEEEC
T ss_pred eEEEECCC------hHHHHHHHHHHhcCCEEEEE
Confidence 99998531 13468899999999998775
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=89.96 E-value=0.22 Score=44.59 Aligned_cols=83 Identities=17% Similarity=0.074 Sum_probs=53.9
Q ss_pred CCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCCC--------CCCCeeEEE
Q 025071 112 FLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQPF--------DNGTFDFEF 172 (258)
Q Consensus 112 ~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LPf--------~d~SFD~V~ 172 (258)
.+.++.+||-+|+|. |..+..+++ .|..+|+++|.++... .++ |... .+ ....+|+|+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i--~~~~-~~~~~v~~~t~g~g~d~v~ 244 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAV--KSGA-GAADAIRELTGGQGATAVF 244 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEE--ECST-THHHHHHHHHGGGCEEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEE--cCCC-cHHHHHHHHhCCCCCeEEE
Confidence 467889999999875 666666665 4556899999764211 111 1111 11 123689998
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..+= ....+++..+.|+|||++++.
T Consensus 245 d~~G-----~~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 245 DFVG-----AQSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp ESSC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred ECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 7421 133678999999999998875
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=0.72 Score=41.44 Aligned_cols=80 Identities=24% Similarity=0.235 Sum_probs=50.6
Q ss_pred CEEEEECCCC-CHHH-HHHH-h-cCCCcEEEEeCCCC---CCc-------eeeecCCCCCCC-----CCCeeEEEecccc
Q 025071 117 SKALSIGARV-GQEV-AALK-L-VGVSDSIGIDLVPR---PPL-------VIKGDFHAQPFD-----NGTFDFEFSNVFD 177 (258)
Q Consensus 117 ~~VLDIGcGt-G~~~-~~L~-~-~g~~~v~GvD~s~~---~~~-------~~~aDa~~LPf~-----d~SFD~V~s~~l~ 177 (258)
.+||-+|+|. |..+ ..++ + .|..+|+++|.++. ... -.. |..+-.+. ++.||+|+..+=
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-~~~~~~~~~i~~~~gg~Dvvid~~g- 251 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV-DSRQTPVEDVPDVYEQMDFIYEATG- 251 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE-ETTTSCGGGHHHHSCCEEEEEECSC-
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc-CCCccCHHHHHHhCCCCCEEEECCC-
Confidence 8999999853 5556 6666 5 57644999998754 211 111 22221111 136999987421
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
. ...+++..+.|+|||+++..
T Consensus 252 ---~-~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 252 ---F-PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp ---C-HHHHHHHHHHEEEEEEEEEC
T ss_pred ---C-hHHHHHHHHHHhcCCEEEEE
Confidence 1 23568899999999998775
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=89.59 E-value=0.1 Score=47.27 Aligned_cols=87 Identities=10% Similarity=-0.039 Sum_probs=53.6
Q ss_pred HhcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCC------CCCCCeeEE
Q 025071 109 QRHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQP------FDNGTFDFE 171 (258)
Q Consensus 109 ~~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LP------f~d~SFD~V 171 (258)
+...+.++.+||-+|+|. |..+..+++ .|. +|+++|.++... .++..+..++. .....+|+|
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~v 261 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHI 261 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEE
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEE
Confidence 344577899999999774 555555554 575 899999763211 11211101100 023379999
Q ss_pred EeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 172 FSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 172 ~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+.++= ...+.+..+.|+|||++++.
T Consensus 262 id~~g------~~~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 262 LEIAG------GAGLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp EEETT------SSCHHHHHHHEEEEEEEEEE
T ss_pred EECCC------hHHHHHHHHHhhcCCEEEEE
Confidence 97421 12357888999999998876
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=89.53 E-value=0.18 Score=45.92 Aligned_cols=120 Identities=15% Similarity=0.134 Sum_probs=68.1
Q ss_pred CEEEEECCCCCHHHHHHHhcC--CCcEEEEeCCCC---------C-CceeeecCCCCCC---CCCCeeEEEec----ccc
Q 025071 117 SKALSIGARVGQEVAALKLVG--VSDSIGIDLVPR---------P-PLVIKGDFHAQPF---DNGTFDFEFSN----VFD 177 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~g--~~~v~GvD~s~~---------~-~~~~~aDa~~LPf---~d~SFD~V~s~----~l~ 177 (258)
.+|+|+-||.|.....+.+.| +..|.++|+++. + ..+..+|+.++.- +...+|+|+.+ .+.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS 82 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence 479999999999999998888 457899998642 1 2356788877642 12269999985 222
Q ss_pred c------cCChH-HHHHHHHhcc---c--CCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE-Eeeeec--CCC
Q 025071 178 H------ALYPW-KFVGEIERTL---K--PAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV-AVRKVD--GFG 242 (258)
Q Consensus 178 h------~~~p~-~~l~Ei~RVL---K--PGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~-~v~~v~--g~~ 242 (258)
. ..++. ..+.|+.|++ + |--.++=-|+.-. . -...+.+.+.|.+.|.. ....++ .+|
T Consensus 83 ~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~-----~---~~~~~~i~~~l~~~GY~v~~~vl~a~~~G 154 (343)
T 1g55_A 83 RIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFE-----V---SSTRDLLIQTIENCGFQYQEFLLSPTSLG 154 (343)
T ss_dssp -------------CHHHHHHHHGGGCSSCCSEEEEEEETTGG-----G---SHHHHHHHHHHHHTTEEEEEEEECGGGGT
T ss_pred hcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCcccc-----C---HHHHHHHHHHHHHCCCeeEEEEEEHHHCC
Confidence 1 12222 2344555554 4 5423222243110 0 01246678888888853 333343 566
Q ss_pred Ce
Q 025071 243 LD 244 (258)
Q Consensus 243 l~ 244 (258)
.+
T Consensus 155 vP 156 (343)
T 1g55_A 155 IP 156 (343)
T ss_dssp CS
T ss_pred CC
Confidence 66
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=89.31 E-value=0.89 Score=44.55 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=45.0
Q ss_pred CCCeeEEEeccccccCCh----HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecC
Q 025071 165 NGTFDFEFSNVFDHALYP----WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDG 240 (258)
Q Consensus 165 d~SFD~V~s~~l~h~~~p----~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g 240 (258)
+..||+++...|....+| ..++++|+|+++|||.+.-.. ....+.+.+.++|+. +....+
T Consensus 177 ~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~---------------~~~~vr~~L~~aGf~-v~~~~~ 240 (676)
T 3ps9_A 177 NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT---------------SAGFVRRGLQDAGFT-MQKRKG 240 (676)
T ss_dssp TTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC---------------CCHHHHHHHHHHTCE-EEEEEC
T ss_pred CCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc---------------CcHHHHHHHHhCCeE-EEeccc
Confidence 468999999766544455 357799999999999876422 124567777777764 334445
Q ss_pred CCCeEEEE
Q 025071 241 FGLDTEVV 248 (258)
Q Consensus 241 ~~l~~~~~ 248 (258)
++-.+++.
T Consensus 241 ~g~krem~ 248 (676)
T 3ps9_A 241 FGRKREML 248 (676)
T ss_dssp STTCCEEE
T ss_pred cccchhhh
Confidence 56555443
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=89.15 E-value=0.14 Score=46.02 Aligned_cols=83 Identities=23% Similarity=0.239 Sum_probs=52.0
Q ss_pred CCCCCCCeeEEEecc-----ccccC-------ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhh
Q 025071 161 QPFDNGTFDFEFSNV-----FDHAL-------YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFR 228 (258)
Q Consensus 161 LPf~d~SFD~V~s~~-----l~h~~-------~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~ 228 (258)
+|-.-+.||+|+.+. .||.. .-+..-+...+.|||||.+++. .|...|.-|+.-+..+.+
T Consensus 205 ~P~~~grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~--------aYGyADR~SE~vV~alAR 276 (324)
T 3trk_A 205 LPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIR--------AYGYADRTSERVICVLGR 276 (324)
T ss_dssp CCGGGCCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEE--------ECCCCSHHHHHHHHHHHT
T ss_pred CCCcCCceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEE--------eecccccchHHHHHHHHh
Confidence 343347999999961 34433 1122346788999999999885 344455556666778888
Q ss_pred cCceEEeeeecCCCCeE--EEEEEe
Q 025071 229 ESELVAVRKVDGFGLDT--EVVFRK 251 (258)
Q Consensus 229 ~~~~~~v~~v~g~~l~~--~~~f~K 251 (258)
+.-.+++-+-..-.-.| -++|.+
T Consensus 277 kF~~~rv~~P~cv~snTEv~~vF~~ 301 (324)
T 3trk_A 277 KFRSSRALKPPCVTSNTEMFFLFSN 301 (324)
T ss_dssp TEEEEEEECCTTCCBTTCEEEEEEE
T ss_pred hheeeeeecCccccccceEEEEEEe
Confidence 77777766653323233 455655
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=88.76 E-value=0.44 Score=42.54 Aligned_cols=87 Identities=13% Similarity=-0.041 Sum_probs=52.0
Q ss_pred hcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC----ce--eeecCCCCCCC-------CCCeeEEEec
Q 025071 110 RHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP----LV--IKGDFHAQPFD-------NGTFDFEFSN 174 (258)
Q Consensus 110 ~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~----~~--~~aDa~~LPf~-------d~SFD~V~s~ 174 (258)
...+ ++.+||-+|+|. |..+..+++ .|..+|+++|.++... .+ ...|..+-.+. .+.+|+|+..
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid~ 238 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEF 238 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEEC
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEEC
Confidence 3345 889999999853 555555554 5754799999753211 01 01111111110 2368999874
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+= ....+++..+.|+|||+++..
T Consensus 239 ~g-----~~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 239 SG-----NEAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp SC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred CC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 21 124568899999999988765
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=88.67 E-value=8 Score=34.91 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeC
Q 025071 98 RVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDL 146 (258)
Q Consensus 98 ~~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~ 146 (258)
..+..+++..++. .+...|+.+|||.......|... +...++-||.
T Consensus 83 ~~iD~~v~~fl~~---~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~ 129 (334)
T 1rjd_A 83 VGIDAAILEFLVA---NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY 129 (334)
T ss_dssp HHHHHHHHHHHHH---CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC
T ss_pred HHHHHHHHHHHHH---CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC
Confidence 3444555555443 24578999999999988888753 3346788884
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=88.48 E-value=0.27 Score=48.51 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=27.1
Q ss_pred CCCeeEEEeccccccCCh----HHHHHHHHhcccCCcEEEE
Q 025071 165 NGTFDFEFSNVFDHALYP----WKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 165 d~SFD~V~s~~l~h~~~p----~~~l~Ei~RVLKPGG~lii 201 (258)
++.||+++...|.-..+| ..++.++.|+++|||.+.-
T Consensus 169 ~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 169 NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 578999998655433334 4678999999999998754
|
| >4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} | Back alignment and structure |
|---|
Probab=88.41 E-value=0.24 Score=48.58 Aligned_cols=83 Identities=22% Similarity=0.285 Sum_probs=53.1
Q ss_pred CCCCCCCCeeEEEecc-----ccccCC-------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHh
Q 025071 160 AQPFDNGTFDFEFSNV-----FDHALY-------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLF 227 (258)
Q Consensus 160 ~LPf~d~SFD~V~s~~-----l~h~~~-------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf 227 (258)
-+| ++..||+|+.+. .||..+ -+..-....+.|||||.+++. .|...|..|+.-+..+.
T Consensus 215 G~p-~~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~--------~YGyADr~sE~vv~ala 285 (670)
T 4gua_A 215 GFP-PQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVK--------SYGYADRNSEDVVTALA 285 (670)
T ss_dssp CCC-CCCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEE--------ESCCCSHHHHHHHHHHH
T ss_pred CCC-CCCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEE--------EeeccccchHHHHHHHH
Confidence 356 457999999961 344331 122347788999999999885 34445555667778888
Q ss_pred hcCceEEeeeecCC--CCeEEEEEEe
Q 025071 228 RESELVAVRKVDGF--GLDTEVVFRK 251 (258)
Q Consensus 228 ~~~~~~~v~~v~g~--~l~~~~~f~K 251 (258)
++....++-.-... .-...++|+-
T Consensus 286 RkF~~~rv~~p~~~~snTEv~~~f~~ 311 (670)
T 4gua_A 286 RKFVRVSAARPDCVSSNTEMYLIFRQ 311 (670)
T ss_dssp HTEEEEEEECCTTCSBTTCEEEEEEE
T ss_pred hheeeeeeeCCCccccCceEEEEEEe
Confidence 88877776654322 2224566665
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=88.18 E-value=0.97 Score=40.01 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=74.8
Q ss_pred EEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------CCceeeecCCCCCCCC-CCeeEEEec----ccc------
Q 025071 118 KALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------PPLVIKGDFHAQPFDN-GTFDFEFSN----VFD------ 177 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------~~~~~~aDa~~LPf~d-~SFD~V~s~----~l~------ 177 (258)
+|||+=||.|.+...|.+.|+..+.++|+.+. +..+..+|+.++...+ ..+|+++.+ .+.
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~~~ 81 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGSLR 81 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTEEC
T ss_pred eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCCcc
Confidence 79999999999999999999877889998764 3346778877765322 358998874 221
Q ss_pred ccCChH-HHHHH---HHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE-Eeeeec--CCCCe
Q 025071 178 HALYPW-KFVGE---IERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV-AVRKVD--GFGLD 244 (258)
Q Consensus 178 h~~~p~-~~l~E---i~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~-~v~~v~--g~~l~ 244 (258)
...|+. ..+.| +.+.+||--.++=-|+.- .+.++....+.+.+.|.+.|.. ....++ .+|.+
T Consensus 82 g~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV~gl-----~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvP 150 (331)
T 3ubt_Y 82 GIDDPRGKLFYEYIRILKQKKPIFFLAENVKGM-----MAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVA 150 (331)
T ss_dssp CTTCGGGHHHHHHHHHHHHHCCSEEEEEECCGG-----GGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCS
T ss_pred CCCCchhHHHHHHHHHHhccCCeEEEeeeeccc-----ccccccchhhhhhhhhccCCcEEEEEecccccCCCC
Confidence 123443 33444 445568853332224311 0111222356778888888853 444443 67777
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.16 E-value=0.28 Score=44.67 Aligned_cols=85 Identities=16% Similarity=0.120 Sum_probs=51.4
Q ss_pred CCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeec---CCC----C-CC-CCCCeeEEE
Q 025071 113 LFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGD---FHA----Q-PF-DNGTFDFEF 172 (258)
Q Consensus 113 l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aD---a~~----L-Pf-~d~SFD~V~ 172 (258)
+.++.+||-+|+|. |..+..+++ .|..+|+++|.++... .++..+ ..+ + .. ....+|+|+
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvi 272 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 272 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEE
Confidence 67889999999763 555555554 5644899999754211 111111 000 0 00 123699999
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.++= . ...+++..+.|+|||+++..
T Consensus 273 d~~g----~-~~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 273 EATG----D-SRALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp ECSS----C-TTHHHHHHHHEEEEEEEEEC
T ss_pred ECCC----C-HHHHHHHHHHHhcCCEEEEE
Confidence 7421 1 13467899999999998775
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=87.99 E-value=0.3 Score=43.52 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=53.4
Q ss_pred HhcCCCCCCEEEEECC--CCCHHHHHHH-hcCCCcEEEEeCCCCCC--------ceeeecCCCC-CC-------CCCCee
Q 025071 109 QRHFLFNESKALSIGA--RVGQEVAALK-LVGVSDSIGIDLVPRPP--------LVIKGDFHAQ-PF-------DNGTFD 169 (258)
Q Consensus 109 ~~~~l~~~~~VLDIGc--GtG~~~~~L~-~~g~~~v~GvD~s~~~~--------~~~~aDa~~L-Pf-------~d~SFD 169 (258)
+...+.++.+||-.|| |.|..+..++ ..|. +|+++|.++... .-...|..+- .+ ..+.+|
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d 227 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGID 227 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEE
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCc
Confidence 3345678899999998 3555555544 4675 799999753210 0011122111 11 114699
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+.++= ...+++..+.|+|||++++.
T Consensus 228 ~vi~~~g------~~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 228 IYFENVG------GKMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp EEEESSC------HHHHHHHHTTEEEEEEEEEC
T ss_pred EEEECCC------HHHHHHHHHHHhcCCEEEEE
Confidence 9998521 13578899999999998775
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=87.92 E-value=0.4 Score=42.91 Aligned_cols=86 Identities=16% Similarity=-0.010 Sum_probs=52.5
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCCC--------CCCCeeEEEe
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQPF--------DNGTFDFEFS 173 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf--------~d~SFD~V~s 173 (258)
..+ ++.+||-+|+|. |..+..+++ .|..+|+++|.++.... -...|...-.+ ....+|+|+.
T Consensus 164 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid 242 (348)
T 2d8a_A 164 GPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLE 242 (348)
T ss_dssp SCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred cCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 345 889999999963 555555554 57547999997642110 01112111111 1236999997
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
++= ....+++..+.|+|||+++..
T Consensus 243 ~~g-----~~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 243 FSG-----APKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp CSC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 521 134568899999999998775
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.84 E-value=0.3 Score=44.42 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=52.0
Q ss_pred CCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeee---c-CCCCCCCCCCeeEEEeccc
Q 025071 112 FLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKG---D-FHAQPFDNGTFDFEFSNVF 176 (258)
Q Consensus 112 ~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~a---D-a~~LPf~d~SFD~V~s~~l 176 (258)
.+.++.+||-+|+|. |..+..+++ .|. +|+++|.++... .++.. + ..++. +.+|+|+..+=
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~---~g~Dvvid~~g 266 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHL---KSFDFILNTVA 266 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTT---TCEEEEEECCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhh---cCCCEEEECCC
Confidence 467889999999874 556666655 575 699999764321 11111 0 11121 47999997421
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEE
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
. ...+++..+.|+|||+++..
T Consensus 267 ~-----~~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 267 A-----PHNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp S-----CCCHHHHHTTEEEEEEEEEC
T ss_pred C-----HHHHHHHHHHhccCCEEEEe
Confidence 0 11256888999999998765
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.55 E-value=0.52 Score=42.15 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=52.6
Q ss_pred CCCCCCEEEEECC--CCCHHHHHHH-hcCCCcEEEEeCCCCCCc-------eeeecCC-CCCC-------CCCCeeEEEe
Q 025071 112 FLFNESKALSIGA--RVGQEVAALK-LVGVSDSIGIDLVPRPPL-------VIKGDFH-AQPF-------DNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGc--GtG~~~~~L~-~~g~~~v~GvD~s~~~~~-------~~~aDa~-~LPf-------~d~SFD~V~s 173 (258)
.+.++.+||-+|+ |.|..+..++ ..|. +|+++|.++.... -...|.. .-.+ .++.+|+|+.
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~ 244 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVIN 244 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEE
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEE
Confidence 4678899999998 3555555444 4675 8999997643210 0111221 0011 0126999988
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
++- ....+++..+.|++||+++..
T Consensus 245 ~~g-----~~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 245 VSV-----SEAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp CSS-----CHHHHHHHTTSEEEEEEEEEC
T ss_pred CCC-----cHHHHHHHHHHHhcCCEEEEE
Confidence 521 134678999999999998775
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=87.31 E-value=0.94 Score=41.06 Aligned_cols=123 Identities=10% Similarity=0.107 Sum_probs=74.0
Q ss_pred CCEEEEECCCCCHHHHHHHhcCC--CcE-EEEeCCCC---------CCceeeecCCCCCCC---CCCeeEEEec----cc
Q 025071 116 ESKALSIGARVGQEVAALKLVGV--SDS-IGIDLVPR---------PPLVIKGDFHAQPFD---NGTFDFEFSN----VF 176 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~--~~v-~GvD~s~~---------~~~~~~aDa~~LPf~---d~SFD~V~s~----~l 176 (258)
.-+++|+-||.|.....+.+.|+ ..+ .++|+.+. +..+..+|+.++... +..+|+++.+ .+
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~f 89 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEEVQVKNLDSISIKQIESLNCNTWFMSPPCQPY 89 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCCCBCCCTTTCCHHHHHHTCCCEEEECCCCTTC
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCCcccCChhhcCHHHhccCCCCEEEecCCccCc
Confidence 45899999999999999998885 456 69998642 223567788777532 2368999864 34
Q ss_pred --c------ccCChH-HHHHHHHh-cccC---CcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE-Eeeeec--C
Q 025071 177 --D------HALYPW-KFVGEIER-TLKP---AGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV-AVRKVD--G 240 (258)
Q Consensus 177 --~------h~~~p~-~~l~Ei~R-VLKP---GG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~-~v~~v~--g 240 (258)
. ...++. ..+.|+.| +++- --.+++..... ..... ...+.+.+.|++.|.. ....++ .
T Consensus 90 s~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~----gl~~~--~~~~~i~~~l~~~GY~v~~~vl~a~~ 163 (327)
T 3qv2_A 90 NNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVP----LFKES--LVFKEIYNILIKNQYYIKDIICSPID 163 (327)
T ss_dssp SHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECG----GGGGS--HHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred ccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchh----hhcCh--HHHHHHHHHHHhCCCEEEEEEEeHHH
Confidence 1 123444 45677777 6542 12333332221 11001 1246788888888853 434444 5
Q ss_pred CCCe
Q 025071 241 FGLD 244 (258)
Q Consensus 241 ~~l~ 244 (258)
+|++
T Consensus 164 yGvP 167 (327)
T 3qv2_A 164 IGIP 167 (327)
T ss_dssp GTCS
T ss_pred cCCC
Confidence 6666
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=87.27 E-value=0.31 Score=44.07 Aligned_cols=41 Identities=17% Similarity=0.332 Sum_probs=28.3
Q ss_pred CCCCeeEEEec---ccc------c---cCChHHHHHHHHhcccCCcEEEEEec
Q 025071 164 DNGTFDFEFSN---VFD------H---ALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 164 ~d~SFD~V~s~---~l~------h---~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++++||+|+.. ... + ...-...+.|+.|+|||||.+++...
T Consensus 55 ~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~ 107 (319)
T 1eg2_A 55 PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 107 (319)
T ss_dssp CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 46788888874 111 1 11224567899999999999999764
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=86.48 E-value=0.91 Score=40.45 Aligned_cols=85 Identities=11% Similarity=0.068 Sum_probs=52.3
Q ss_pred CCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCCCCC------CCeeEEEeccc
Q 025071 112 FLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQPFDN------GTFDFEFSNVF 176 (258)
Q Consensus 112 ~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf~d------~SFD~V~s~~l 176 (258)
.+.++.+||-+|+|. |..+..+++ .|. +|+++|.++.... -...|..+-.+.+ +.+|+|+.++=
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g 239 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV 239 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCC
Confidence 467889999999963 555555544 675 8999997542110 0111221111100 36899987521
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEE
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
....+++..+.|+|||+++..
T Consensus 240 -----~~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 240 -----SKPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp -----CHHHHHHHHHHEEEEEEEEEC
T ss_pred -----CHHHHHHHHHHhhcCCEEEEe
Confidence 124568899999999998775
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.44 E-value=3.3 Score=37.83 Aligned_cols=87 Identities=13% Similarity=0.024 Sum_probs=50.8
Q ss_pred CCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCCCCC--------CCCCeeEEEec
Q 025071 112 FLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHAQPF--------DNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~LPf--------~d~SFD~V~s~ 174 (258)
.+.++.+||=+|+|. |..+..+++ .|...|+++|.++....+ ..-|...-.+ ....+|+|+.+
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~ 289 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEA 289 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEEC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEEC
Confidence 467889999999863 445555554 576689999976421100 0111111111 12369999874
Q ss_pred cccccCChHHHHHHHHhcc----cCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTL----KPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVL----KPGG~lii~ 202 (258)
+ -.+...+..+.+.| +|||++++.
T Consensus 290 ~----g~~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 290 T----GVPQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp S----SCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred C----CCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence 2 12333445555555 999998875
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.33 E-value=1.1 Score=40.20 Aligned_cols=90 Identities=12% Similarity=0.064 Sum_probs=53.9
Q ss_pred HHHHhcCCCCCCEEEEECC--CCCHHHHHHH-hcCCCcEEEEeCCCCCCc-------eeeecCCCCCC--------CCCC
Q 025071 106 DLKQRHFLFNESKALSIGA--RVGQEVAALK-LVGVSDSIGIDLVPRPPL-------VIKGDFHAQPF--------DNGT 167 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGc--GtG~~~~~L~-~~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf--------~d~S 167 (258)
.+.+...+.++.+||-.|+ |.|..+..++ ..|. +|+++|.++.... -...|..+-.+ ....
T Consensus 161 al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~ 239 (351)
T 1yb5_A 161 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKG 239 (351)
T ss_dssp HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTC
T ss_pred HHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCC
Confidence 3333345678899999997 3455444444 4675 7999997532100 01112221111 1236
Q ss_pred eeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 168 FDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 168 FD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+|+.++= ...+.+..+.|+|||+++..
T Consensus 240 ~D~vi~~~G------~~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 240 IDIIIEMLA------NVNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp EEEEEESCH------HHHHHHHHHHEEEEEEEEEC
T ss_pred cEEEEECCC------hHHHHHHHHhccCCCEEEEE
Confidence 999998521 23467889999999998775
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=86.18 E-value=0.32 Score=42.63 Aligned_cols=88 Identities=19% Similarity=0.187 Sum_probs=53.1
Q ss_pred HHHHhcCCCCCCEEEEECC--CCCHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCC-CCCCC--CCeeEEE
Q 025071 106 DLKQRHFLFNESKALSIGA--RVGQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHA-QPFDN--GTFDFEF 172 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGc--GtG~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~-LPf~d--~SFD~V~ 172 (258)
.+.... +.++.+||-+|+ |.|..+..+++ .|. +|+++|.++..... ...|..+ -.+.+ +.+|+|+
T Consensus 117 ~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vi 194 (302)
T 1iz0_A 117 ALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVL 194 (302)
T ss_dssp HHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEE
T ss_pred HHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEE
Confidence 333344 778999999998 34555555554 675 89999976432210 0111110 00000 4689988
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
. +=. ..+++..+.|+|||+++..
T Consensus 195 d-~g~------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 195 E-VRG------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp E-CSC------TTHHHHHTTEEEEEEEEEC
T ss_pred E-CCH------HHHHHHHHhhccCCEEEEE
Confidence 7 321 2467899999999988764
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=85.68 E-value=0.42 Score=42.79 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=54.8
Q ss_pred HHHHHhcCCCCCCEEEEECC--CCCHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCC------CCCC
Q 025071 105 QDLKQRHFLFNESKALSIGA--RVGQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQP------FDNG 166 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGc--GtG~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LP------f~d~ 166 (258)
..+.+...+.++.+||-.|+ |.|..+..+++ .|. +|++++.++... .++..+ .++. ....
T Consensus 149 ~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~ 226 (342)
T 4eye_A 149 FAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIVLPLE-EGWAKAVREATGGA 226 (342)
T ss_dssp HHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTS
T ss_pred HHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCC
Confidence 33334455778999999998 34555555554 575 899999764321 111111 1100 0123
Q ss_pred CeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 167 TFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 167 SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+|+|+.++=. ..+.+..+.|+|||++++.
T Consensus 227 g~Dvvid~~g~------~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 227 GVDMVVDPIGG------PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp CEEEEEESCC--------CHHHHHHTEEEEEEEEEC
T ss_pred CceEEEECCch------hHHHHHHHhhcCCCEEEEE
Confidence 69999975211 1457889999999998875
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=85.64 E-value=0.31 Score=43.60 Aligned_cols=83 Identities=12% Similarity=0.039 Sum_probs=51.7
Q ss_pred CCCCCCEEEEECCCC-CHHHHHHHh-c--CCCcEEEEeCCCCCC---------ceeeecC-----CCCCCCCCCeeEEEe
Q 025071 112 FLFNESKALSIGARV-GQEVAALKL-V--GVSDSIGIDLVPRPP---------LVIKGDF-----HAQPFDNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGcGt-G~~~~~L~~-~--g~~~v~GvD~s~~~~---------~~~~aDa-----~~LPf~d~SFD~V~s 173 (258)
.+ ++.+||-+|+|. |..+..+++ . |. +|+++|.++... .++..+. .++. ....+|+|+.
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~-~g~g~D~vid 244 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALELGADYVSEMKDAESLINKLT-DGLGASIAID 244 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhh-cCCCccEEEE
Confidence 46 889999999964 555555554 5 75 799999764211 1111000 0110 1237999997
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+= -...+++..+.|+|||+++..
T Consensus 245 ~~g-----~~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 245 LVG-----TEETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp SSC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCC-----ChHHHHHHHHHhhcCCEEEEe
Confidence 521 123568899999999998775
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=84.55 E-value=8.6 Score=33.69 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=24.9
Q ss_pred CCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEE
Q 025071 165 NGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 165 d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii 201 (258)
.++||+|+..+ ++...-..+++.+...|+|||++++
T Consensus 180 ~~~~dlv~ID~-D~Y~~t~~~le~~~p~l~~GGvIv~ 215 (257)
T 3tos_A 180 QTVIALAYFDL-DLYEPTKAVLEAIRPYLTKGSIVAF 215 (257)
T ss_dssp TCCEEEEEECC-CCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCceEEEEEcC-cccchHHHHHHHHHHHhCCCcEEEE
Confidence 45688888742 2212223467889999999999998
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=83.95 E-value=0.72 Score=41.14 Aligned_cols=84 Identities=8% Similarity=0.004 Sum_probs=52.8
Q ss_pred CCCCCCEEEEECC--CCCHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCCC--------CCCCeeEEEe
Q 025071 112 FLFNESKALSIGA--RVGQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQPF--------DNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGc--GtG~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf--------~d~SFD~V~s 173 (258)
.+.++.+||-+|+ |.|..+..+++ .|. +|+++|.++.... -...|..+-.+ ....+|+|+.
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~ 241 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVD 241 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEE
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEE
Confidence 5678899999998 56666655554 675 8999997532110 01112221111 1247999998
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
++=. ..+++..+.|+|||+++..
T Consensus 242 ~~g~------~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 242 HTGA------LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp SSCS------SSHHHHHHHEEEEEEEEES
T ss_pred CCCH------HHHHHHHHhhccCCEEEEE
Confidence 5311 2357888999999988775
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=83.90 E-value=0.9 Score=40.84 Aligned_cols=88 Identities=14% Similarity=-0.024 Sum_probs=51.8
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCCC-CCC---CCCeeEEEecccc
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHAQ-PFD---NGTFDFEFSNVFD 177 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~L-Pf~---d~SFD~V~s~~l~ 177 (258)
..+.++.+||-+|+|. |..+..+++ .|. +|+++|.++..... ...|..+- .+. .+.+|+|+..+=.
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~ 253 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS 253 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCC
Confidence 3567889999999853 555555554 576 69999976543210 01111111 100 0479999975211
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
. +...+++..+.|+|||+++..
T Consensus 254 -~--~~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 254 -L--TDIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp -S--TTCCTTTGGGGEEEEEEEEEC
T ss_pred -C--cHHHHHHHHHHhcCCCEEEEe
Confidence 0 011245788999999998765
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=83.76 E-value=1.3 Score=39.40 Aligned_cols=86 Identities=19% Similarity=0.113 Sum_probs=52.6
Q ss_pred cCCCCCCEEEEECCC--CCHHHHHHH-hc-CCCcEEEEeCCCCCCc-------eeeecCCCCCC-------CC-CCeeEE
Q 025071 111 HFLFNESKALSIGAR--VGQEVAALK-LV-GVSDSIGIDLVPRPPL-------VIKGDFHAQPF-------DN-GTFDFE 171 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG--tG~~~~~L~-~~-g~~~v~GvD~s~~~~~-------~~~aDa~~LPf-------~d-~SFD~V 171 (258)
..+.++.+||-.|+| .|..+..++ .. |. +|+++|.++.... -...|..+..+ .+ +.+|+|
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v 244 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAV 244 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEE
Confidence 456788999999998 444444443 45 75 7999997542110 01112111111 11 479999
Q ss_pred EeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 172 FSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 172 ~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+.++= ....+++..+.|+|||+++..
T Consensus 245 i~~~g-----~~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 245 IDLNN-----SEKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp EESCC-----CHHHHTTGGGGEEEEEEEEEC
T ss_pred EECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 98521 133567889999999998775
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=83.70 E-value=1.9 Score=38.05 Aligned_cols=86 Identities=17% Similarity=0.070 Sum_probs=52.2
Q ss_pred hcCCCCCCEEEEECC--CCCHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCCC--------CCCCeeEE
Q 025071 110 RHFLFNESKALSIGA--RVGQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQPF--------DNGTFDFE 171 (258)
Q Consensus 110 ~~~l~~~~~VLDIGc--GtG~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf--------~d~SFD~V 171 (258)
...+.++.+||-+|+ |.|..+..+++ .|. +|+++|.++.... -...|...-.+ ....+|+|
T Consensus 143 ~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~v 221 (334)
T 3qwb_A 143 AYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDAS 221 (334)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred hccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEE
Confidence 345678999999995 34555555544 575 8999997532110 01111111111 13469999
Q ss_pred EeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 172 FSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 172 ~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+.++= ...+++..+.|+|||+++..
T Consensus 222 id~~g------~~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 222 FDSVG------KDTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp EECCG------GGGHHHHHHHEEEEEEEEEC
T ss_pred EECCC------hHHHHHHHHHhccCCEEEEE
Confidence 98521 13467888999999998875
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=83.40 E-value=0.85 Score=39.42 Aligned_cols=21 Identities=10% Similarity=0.350 Sum_probs=17.8
Q ss_pred HHHHHHHHhcccCCcEEEEEe
Q 025071 183 WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v 203 (258)
...++|+.|+|||||.+++..
T Consensus 54 ~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 54 YRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCeEEEEEc
Confidence 456789999999999998864
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=82.81 E-value=2.6 Score=37.80 Aligned_cols=78 Identities=18% Similarity=0.102 Sum_probs=48.8
Q ss_pred CCEEEEECCCC-CHHHHHHH-hcCCCcEEEEeCCC---CCCc-------eeeecCCCCCCCC------CCeeEEEecccc
Q 025071 116 ESKALSIGARV-GQEVAALK-LVGVSDSIGIDLVP---RPPL-------VIKGDFHAQPFDN------GTFDFEFSNVFD 177 (258)
Q Consensus 116 ~~~VLDIGcGt-G~~~~~L~-~~g~~~v~GvD~s~---~~~~-------~~~aDa~~LPf~d------~SFD~V~s~~l~ 177 (258)
+.+||-+|+|. |..+..++ ..|. +|+++|.++ .... -.. | .+ .+.+ +.+|+|+.++=
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~ga~~v-~-~~-~~~~~~~~~~~~~d~vid~~g- 255 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEETKTNYY-N-SS-NGYDKLKDSVGKFDVIIDATG- 255 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHHTCEEE-E-CT-TCSHHHHHHHCCEEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHhCCcee-c-hH-HHHHHHHHhCCCCCEEEECCC-
Confidence 89999999842 33333443 4676 899999875 3211 111 3 33 3221 46999998521
Q ss_pred ccCChHHHH-HHHHhcccCCcEEEEE
Q 025071 178 HALYPWKFV-GEIERTLKPAGVCVLH 202 (258)
Q Consensus 178 h~~~p~~~l-~Ei~RVLKPGG~lii~ 202 (258)
.+ ..+ ++..+.|+|||+++..
T Consensus 256 ---~~-~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 256 ---AD-VNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp ---CC-THHHHHHGGGEEEEEEEEEC
T ss_pred ---Ch-HHHHHHHHHHHhcCCEEEEE
Confidence 11 245 7899999999998775
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=82.72 E-value=1.2 Score=39.69 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=48.8
Q ss_pred CCCEEEEEC-CC-CCHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCCC-------CCCCeeEEEecccc
Q 025071 115 NESKALSIG-AR-VGQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQPF-------DNGTFDFEFSNVFD 177 (258)
Q Consensus 115 ~~~~VLDIG-cG-tG~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf-------~d~SFD~V~s~~l~ 177 (258)
++.+||-+| +| .|..+..+++ .|. +|+++|.++.... -...|..+ .+ ..+.+|+|+.++
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~~~~~~g~Dvv~d~~-- 225 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKMGADIVLNHKE-SLLNQFKTQGIELVDYVFCTF-- 225 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHHTCSEEECTTS-CHHHHHHHHTCCCEEEEEESS--
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEECCc-cHHHHHHHhCCCCccEEEECC--
Confidence 788999994 44 3555555554 576 8999997532110 00111111 11 234699999742
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.....+.+..+.|+|||+++..
T Consensus 226 ---g~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 226 ---NTDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEES
T ss_pred ---CchHHHHHHHHHhccCCEEEEE
Confidence 1234568889999999998764
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=82.28 E-value=1.3 Score=39.94 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=70.8
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------CceeeecCCCCCCCC-CCeeEEEec----cccc----
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------PLVIKGDFHAQPFDN-GTFDFEFSN----VFDH---- 178 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------~~~~~aDa~~LPf~d-~SFD~V~s~----~l~h---- 178 (258)
+.+++|+.||.|.....+.+.|+..|.++|+.+.. +....+|+.++.-.+ ..+|+|+.+ .+..
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ag~~ 90 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQ 90 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTTSCC
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCCcCCHHHcCHhhCCCCCEEEECCCCCCcchhccc
Confidence 46899999999999999999998778899986421 111256666553211 258999974 2221
Q ss_pred --cCChH-HHH---HHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE-Eeeeec--CCCCe
Q 025071 179 --ALYPW-KFV---GEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV-AVRKVD--GFGLD 244 (258)
Q Consensus 179 --~~~p~-~~l---~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~-~v~~v~--g~~l~ 244 (258)
..++. ..+ -++.+.+||--.++=-|+.-. +.+.-...+.+.+.|++.|.. ....++ .+|.+
T Consensus 91 ~g~~d~r~~L~~~~~r~i~~~~P~~~~~ENV~gl~-----~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvP 160 (327)
T 2c7p_A 91 KGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFA-----SHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIP 160 (327)
T ss_dssp CGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGG-----TGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCS
T ss_pred CCCcchhhHHHHHHHHHHHhccCcEEEEeCcHHHH-----hccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCC
Confidence 12332 123 344455678533333343210 111111246778888888743 333333 56776
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=81.94 E-value=1.1 Score=40.05 Aligned_cols=90 Identities=13% Similarity=0.167 Sum_probs=53.9
Q ss_pred HHHhcCCCCC--CEEEEECCC--CCHHHHHHH-hcCCCcEEEEeCCCCCC--------ceeeecCCCCCC-------CCC
Q 025071 107 LKQRHFLFNE--SKALSIGAR--VGQEVAALK-LVGVSDSIGIDLVPRPP--------LVIKGDFHAQPF-------DNG 166 (258)
Q Consensus 107 L~~~~~l~~~--~~VLDIGcG--tG~~~~~L~-~~g~~~v~GvD~s~~~~--------~~~~aDa~~LPf-------~d~ 166 (258)
+.+...+.++ .+||-.|++ .|..+..++ ..|..+|+++|.++... .-...|..+-.+ ..+
T Consensus 150 l~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~ 229 (357)
T 2zb4_A 150 IQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPA 229 (357)
T ss_dssp HHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTT
T ss_pred HHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCC
Confidence 3344557788 999999983 444444443 46754799999753110 001112211111 112
Q ss_pred CeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 167 TFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 167 SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+|+|+.++= ...+++..+.|++||++++.
T Consensus 230 ~~d~vi~~~G------~~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 230 GVDVYFDNVG------GNISDTVISQMNENSHIILC 259 (357)
T ss_dssp CEEEEEESCC------HHHHHHHHHTEEEEEEEEEC
T ss_pred CCCEEEECCC------HHHHHHHHHHhccCcEEEEE
Confidence 6999998531 24578899999999998775
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=81.25 E-value=1.4 Score=39.75 Aligned_cols=87 Identities=16% Similarity=0.077 Sum_probs=53.5
Q ss_pred HhcCCCCCCEEEEECC--CCCHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCCC-------CCCCeeEE
Q 025071 109 QRHFLFNESKALSIGA--RVGQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQPF-------DNGTFDFE 171 (258)
Q Consensus 109 ~~~~l~~~~~VLDIGc--GtG~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf-------~d~SFD~V 171 (258)
....+.++.+||-.|+ |.|..+..+++ .|. +|+++|.++.... -...|...-.+ ..+.+|+|
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~v 235 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVV 235 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEE
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEE
Confidence 3345778999999993 45666665554 576 7999997532100 00111111111 12469999
Q ss_pred EeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 172 FSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 172 ~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+.++= ...++++.+.|+|||+++..
T Consensus 236 id~~g------~~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 236 YESVG------GAMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp EECSC------THHHHHHHHHEEEEEEEEEC
T ss_pred EECCC------HHHHHHHHHHHhcCCEEEEE
Confidence 98521 14568899999999998775
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=80.75 E-value=2.1 Score=37.78 Aligned_cols=89 Identities=18% Similarity=0.127 Sum_probs=53.8
Q ss_pred HHHhcCCCCCCEEEEECC-C-CCHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCCC--------CCCCe
Q 025071 107 LKQRHFLFNESKALSIGA-R-VGQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQPF--------DNGTF 168 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGc-G-tG~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf--------~d~SF 168 (258)
+.....+.++.+||-.|+ | .|..+..+++ .|. +|+++|.++.... -...|...-.+ ....+
T Consensus 132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~ 210 (325)
T 3jyn_A 132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKC 210 (325)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCE
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCc
Confidence 333345778999999993 3 4555555544 576 8999997542110 01112111111 23479
Q ss_pred eEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+|+.++=. ..+.+..+.|+|||++++.
T Consensus 211 Dvvid~~g~------~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 211 PVVYDGVGQ------DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp EEEEESSCG------GGHHHHHTTEEEEEEEEEC
T ss_pred eEEEECCCh------HHHHHHHHHhcCCCEEEEE
Confidence 999985211 2457889999999998886
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=80.22 E-value=2.3 Score=38.06 Aligned_cols=45 Identities=7% Similarity=-0.023 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
.+++.++... ..++..|||--||+|..+.+..+.| .+.+|+|+.+
T Consensus 240 ~l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~g-r~~ig~e~~~ 284 (323)
T 1boo_A 240 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKP 284 (323)
T ss_dssp HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCH
T ss_pred HHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHcC-CCEEEEeCCH
Confidence 4566666543 3578899999999999998877777 4899999864
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=80.10 E-value=6.2 Score=34.76 Aligned_cols=87 Identities=13% Similarity=-0.095 Sum_probs=51.2
Q ss_pred cCCCCCCEEEEECCCCCH-HHH-HHHhcCCCcEEEEeCCCCCCc-------eeeecCCCCCC--------CCCCeeEEEe
Q 025071 111 HFLFNESKALSIGARVGQ-EVA-ALKLVGVSDSIGIDLVPRPPL-------VIKGDFHAQPF--------DNGTFDFEFS 173 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~-~~~-~L~~~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf--------~d~SFD~V~s 173 (258)
..+.++.+||=+|+|++. .+. .++..+..+|+++|.++.... -..-|..+-.+ ...-+|.++.
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~ 238 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIV 238 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEE
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEE
Confidence 346789999999998653 333 334455568999997643110 00111111111 2234676665
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+. ....+....+.|+|||.+++.
T Consensus 239 ~~~-----~~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 239 CAV-----ARIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp CCS-----CHHHHHHHHHTEEEEEEEEEC
T ss_pred ecc-----CcchhheeheeecCCceEEEE
Confidence 321 234567889999999998775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 258 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.88 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.87 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.86 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.84 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.83 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.81 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.8 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.77 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.76 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.75 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.72 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.72 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.72 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.7 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.7 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.7 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.69 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.68 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.66 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.64 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.62 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.6 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.6 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.55 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.55 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.54 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.52 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.51 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.5 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.5 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.5 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.5 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.49 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.47 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.46 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.44 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.44 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.44 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.44 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.43 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.42 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.39 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.37 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.36 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.35 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.3 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.29 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.27 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.24 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.08 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.99 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.99 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.98 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.83 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.83 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.8 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.73 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.72 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.7 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.7 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.69 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.69 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.64 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.62 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.59 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.58 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.57 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.57 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.42 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.37 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.34 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.25 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.23 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.23 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.21 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.21 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.17 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.14 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.02 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.0 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.0 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.94 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.86 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.79 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.74 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.73 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.7 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.66 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.61 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.59 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.58 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.55 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.43 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.31 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.11 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.92 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.77 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.69 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.27 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.13 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.91 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.8 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.72 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.65 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.61 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.53 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 95.22 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.02 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.86 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.73 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 94.13 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.11 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.41 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 91.82 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 91.63 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 91.58 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 90.5 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 90.02 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 89.76 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.05 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 88.84 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 88.82 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.8 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 88.47 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 87.45 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 87.32 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 86.61 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 85.96 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 84.97 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 84.27 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 84.05 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 83.75 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 81.46 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 80.71 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 80.24 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.88 E-value=9e-23 Score=173.23 Aligned_cols=129 Identities=21% Similarity=0.256 Sum_probs=102.7
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeE
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDF 170 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~ 170 (258)
++++...++++.+|||||||+|..+..+++.|. +|+|+|+++. ...++++|++++||++++||+
T Consensus 6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~ 84 (231)
T d1vl5a_ 6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHI 84 (231)
T ss_dssp HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEE
T ss_pred HHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccccccccccccccccccccccc
Confidence 344555688899999999999999999998874 8999999742 124789999999999999999
Q ss_pred EEec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCc-------------CcCCCCCCCChhHHHHHhhcCceEEe
Q 025071 171 EFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA-------------DKYSANDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 171 V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-------------~~y~~~~~~s~~~l~~lf~~~~~~~v 235 (258)
|+|. +++|+.+|.++++|++|+|||||++++........ ..+...+.++.+++.++++++|+..+
T Consensus 85 v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 163 (231)
T d1vl5a_ 85 VTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELE 163 (231)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEE
T ss_pred ccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEE
Confidence 9995 89999999999999999999999998864322111 01223355788999999999987543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.87 E-value=1.1e-21 Score=168.12 Aligned_cols=126 Identities=22% Similarity=0.242 Sum_probs=101.0
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEE
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFE 171 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V 171 (258)
+++...++++.+|||||||+|..+..|++.+ .+|+|+|+|+. ...++++|++++||+|++||+|
T Consensus 8 l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 86 (234)
T d1xxla_ 8 MIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDII 86 (234)
T ss_dssp HHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEE
T ss_pred HHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhccccccccccccccccccccccccccee
Confidence 4455578899999999999999999999887 48999999742 1347899999999999999999
Q ss_pred Eec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCcC-------------cCCCCCCCChhHHHHHhhcCceE
Q 025071 172 FSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRAD-------------KYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 172 ~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~-------------~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
+|. +++|+.+|..+++|+.|+|||||++++......... .......++..++..++.+.|+.
T Consensus 87 ~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~ 162 (234)
T d1xxla_ 87 TCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLA 162 (234)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEE
T ss_pred eeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCc
Confidence 995 899999999999999999999999888643221110 01122335788899999999873
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.86 E-value=2.2e-21 Score=171.05 Aligned_cols=137 Identities=26% Similarity=0.349 Sum_probs=108.8
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCCCC
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQPF 163 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf 163 (258)
+.+.+.+.....+.++.+|||||||+|..+..|++. |. +|+|+|+++. ...+.++|++++||
T Consensus 53 ~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~ 131 (282)
T d2o57a1 53 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 131 (282)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccccccccc
Confidence 445556666667889999999999999999999874 54 8999999752 23478899999999
Q ss_pred CCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCcC----------cCCCCCCCChhHHHHHhhcCce
Q 025071 164 DNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRAD----------KYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 164 ~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~----------~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
++++||+|++. +++|+.++..+++|++|+|||||++++......... .+...++.+..+..++++++|+
T Consensus 132 ~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf 211 (282)
T d2o57a1 132 EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGL 211 (282)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTE
T ss_pred cccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCC
Confidence 99999999995 899999999999999999999999988754321110 1123455688899999999998
Q ss_pred EEeeee
Q 025071 233 VAVRKV 238 (258)
Q Consensus 233 ~~v~~v 238 (258)
..+...
T Consensus 212 ~~i~~~ 217 (282)
T d2o57a1 212 VTLRTF 217 (282)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 766654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=5.9e-21 Score=162.20 Aligned_cols=91 Identities=24% Similarity=0.336 Sum_probs=81.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------CCceeeecCCCCCCCCCCeeEEEe-c-cccccCC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------PPLVIKGDFHAQPFDNGTFDFEFS-N-VFDHALY 181 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------~~~~~~aDa~~LPf~d~SFD~V~s-~-~l~h~~~ 181 (258)
+.++.+|||+|||+|..+..|++.|. +|+|+|+|+. ...++.+|++++||++++||+|+| . +++|+.+
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred cCCCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhh
Confidence 45778999999999999999999886 7999999752 235788999999999999999997 3 6899999
Q ss_pred hHHHHHHHHhcccCCcEEEEEec
Q 025071 182 PWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+.++++|+.|+|||||.+++.++
T Consensus 119 ~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 119 KDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCcCcEEEEEEC
Confidence 99999999999999999999875
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=1.8e-20 Score=157.11 Aligned_cols=118 Identities=24% Similarity=0.377 Sum_probs=96.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------CCceeeecCCCCCCCCCCeeEEEec-cccccCChHH
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWK 184 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~ 184 (258)
.++++|||||||+|..+..++ .++|+|+|+. ...+.++|++++|+++++||+|+|. +++|+.+|..
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~~ 109 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPER 109 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHH
T ss_pred CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccccccccccccccccccccccccccccccccccccccc
Confidence 356789999999999988774 4789999753 3458999999999999999999995 8999999999
Q ss_pred HHHHHHhcccCCcEEEEEeccccC-----------c-CcCCCCCCCChhHHHHHhhcCceEEee
Q 025071 185 FVGEIERTLKPAGVCVLHVALSRR-----------A-DKYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 185 ~l~Ei~RVLKPGG~lii~v~~~~~-----------~-~~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+++|++|+|||||.+++.++.... . ..+....+++.+++.++++++|+..+.
T Consensus 110 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~ 173 (208)
T d1vlma_ 110 ALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 173 (208)
T ss_dssp HHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred chhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEE
Confidence 999999999999999998764321 0 012233457999999999999986554
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.81 E-value=6.2e-20 Score=153.91 Aligned_cols=93 Identities=24% Similarity=0.342 Sum_probs=80.1
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec-cc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN-VF 176 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l 176 (258)
.++++++|||||||+|..+..|++.|. +|+|+|+|+. ....+++|+.++|+++++||+|+|. ++
T Consensus 34 ~l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l 112 (226)
T d1ve3a1 34 YMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI 112 (226)
T ss_dssp SCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred hcCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecch
Confidence 457888999999999999999999875 7999999742 2346788999999999999999995 89
Q ss_pred cccC--ChHHHHHHHHhcccCCcEEEEEecc
Q 025071 177 DHAL--YPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 177 ~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
+|+. ++.++++|+.|+|||||++++..+.
T Consensus 113 ~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 113 VHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9986 5667899999999999999887653
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=2.3e-19 Score=154.70 Aligned_cols=128 Identities=19% Similarity=0.160 Sum_probs=99.3
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCe
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTF 168 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SF 168 (258)
.+.+...+.++.+|||||||+|..+..+++. | .+|+|||+|+. ...++.+|++++ +++++|
T Consensus 24 ~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~f 101 (245)
T d1nkva_ 24 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKC 101 (245)
T ss_dssp HHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCE
T ss_pred HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCce
Confidence 3444456788999999999999999988764 5 48999999742 124788999998 578999
Q ss_pred eEEEec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCcC----------cCCCCCCCChhHHHHHhhcCceEEe
Q 025071 169 DFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRAD----------KYSANDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 169 D~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~----------~y~~~~~~s~~~l~~lf~~~~~~~v 235 (258)
|+|+|. +++|+.++..+++|++|+|||||++++..+..+... .....++.+..++.+.+.++|+..+
T Consensus 102 D~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v 179 (245)
T d1nkva_ 102 DVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVV 179 (245)
T ss_dssp EEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCC
T ss_pred eEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEE
Confidence 999995 899999999999999999999999999765322111 1122345678889999999987533
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.7e-19 Score=150.84 Aligned_cols=124 Identities=15% Similarity=0.171 Sum_probs=96.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC---------------CceeeecCCCCCCCCCCeeEEEec-cc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP---------------PLVIKGDFHAQPFDNGTFDFEFSN-VF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~d~SFD~V~s~-~l 176 (258)
..++.+|||||||+|..+..|.+.+..+|+|||+|+.. ..+.++|++++++++++||+|++. ++
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 34567999999999999988765555689999997521 147899999999999999999995 89
Q ss_pred cccCChH--HHHHHHHhcccCCcEEEEEeccccCcCcC---CCCCCCChhHHHHHhhcCceEEee
Q 025071 177 DHALYPW--KFVGEIERTLKPAGVCVLHVALSRRADKY---SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 177 ~h~~~p~--~~l~Ei~RVLKPGG~lii~v~~~~~~~~y---~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+|+.+++ +++++++|+|||||.+++..+.......+ .....++.+++.++|+++|+..+.
T Consensus 138 ~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~ 202 (222)
T d2ex4a1 138 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA 202 (222)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred ccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEE
Confidence 9998764 68999999999999999986544322222 112235789999999999975444
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.76 E-value=2.9e-18 Score=143.43 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=88.3
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC---------------CceeeecCCCCCCCCCCeeEEEec-cccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP---------------PLVIKGDFHAQPFDNGTFDFEFSN-VFDH 178 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~d~SFD~V~s~-~l~h 178 (258)
.+++|||||||+|..+.+|++.|. +|+|+|+++.. ..+..+|+.++++ +++||+|++. +++|
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMF 107 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeec
Confidence 456999999999999999999986 79999997521 2357788888887 6899999995 8888
Q ss_pred cCChH--HHHHHHHhcccCCcEEEEEeccccCcC--cCCCCCCCChhHHHHHhhcCceEEee
Q 025071 179 ALYPW--KFVGEIERTLKPAGVCVLHVALSRRAD--KYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 179 ~~~p~--~~l~Ei~RVLKPGG~lii~v~~~~~~~--~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
++.+. +++++++|+|||||++++......... .......++..++.++|...+++...
T Consensus 108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~i~~~~ 169 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELRRYYEGWDMLKYN 169 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEEEEEEEEEEEBC---------CCCCBCTTHHHHHTTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCCCCCCCCccCHHHHHHHhCCCeEEEee
Confidence 87554 689999999999999988754321111 11122235667899999766665433
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.75 E-value=2.2e-18 Score=147.06 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=95.0
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------CCceeeecCCCCCCCCCCeeEEEec-cccccCCh
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYP 182 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p 182 (258)
.+++|||||||+|..+..|++.|. +|+|+|+++. ...++.+|++.+++ +++||+|++. +++|+.+|
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~d~ 97 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHIDDP 97 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCSSH
T ss_pred CCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEecCCH
Confidence 567899999999999999998885 7999999742 23467889988887 5899999994 99999999
Q ss_pred HHHHHHHH-hcccCCcEEEEEeccccC--------------cCc-------CCCCCCCChhHHHHHhhcCceEE
Q 025071 183 WKFVGEIE-RTLKPAGVCVLHVALSRR--------------ADK-------YSANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 183 ~~~l~Ei~-RVLKPGG~lii~v~~~~~--------------~~~-------y~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
..+++|+. |+|||||.+++.++.... ... ....+.|+.+++.+++.++|+.-
T Consensus 98 ~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i 171 (225)
T d2p7ia1 98 VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV 171 (225)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEE
Confidence 99999998 899999999998864210 000 11234578999999999999753
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.72 E-value=9.4e-18 Score=143.51 Aligned_cols=99 Identities=20% Similarity=0.276 Sum_probs=79.6
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCe
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTF 168 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SF 168 (258)
++..++......++.+|||||||||..+..|++.|. +|+|+|+|+. ...+.++|++++|+++ +|
T Consensus 29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~-~f 106 (251)
T d1wzna1 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKN-EF 106 (251)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCS-CE
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccccchheehhhhhccccc-cc
Confidence 344444444556778999999999999999999886 8999999752 2458899999999985 89
Q ss_pred eEEEec--cccccC--ChHHHHHHHHhcccCCcEEEEEe
Q 025071 169 DFEFSN--VFDHAL--YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 169 D~V~s~--~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
|+|+|. ++.|+. ++.+++++++|+|||||++++.+
T Consensus 107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 999983 566653 45689999999999999998854
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.72 E-value=6.4e-18 Score=147.87 Aligned_cols=125 Identities=19% Similarity=0.145 Sum_probs=95.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------C-CceeeecCCCCCCCCCCeeEEEec-cccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------P-PLVIKGDFHAQPFDNGTFDFEFSN-VFDH 178 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------~-~~~~~aDa~~LPf~d~SFD~V~s~-~l~h 178 (258)
...+.+|||+|||+|..+..|+..++..|+|+|+++. + ..+.++|++++++++++||+|++. +++|
T Consensus 91 ~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~h 170 (254)
T d1xtpa_ 91 GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccccc
Confidence 3466799999999999998877655568999998742 1 246789999999999999999995 8999
Q ss_pred cCChH--HHHHHHHhcccCCcEEEEEeccccCc-CcC---CCCCCCChhHHHHHhhcCceEEeee
Q 025071 179 ALYPW--KFVGEIERTLKPAGVCVLHVALSRRA-DKY---SANDLFSVKPLVKLFRESELVAVRK 237 (258)
Q Consensus 179 ~~~p~--~~l~Ei~RVLKPGG~lii~v~~~~~~-~~y---~~~~~~s~~~l~~lf~~~~~~~v~~ 237 (258)
+.+++ +++++++|+|||||.+++..+..... ..+ .....++.+++.++|+++|+.-+..
T Consensus 171 l~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~ 235 (254)
T d1xtpa_ 171 LTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred cchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEE
Confidence 98775 67999999999999999875433211 111 1112257889999999999754443
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.72 E-value=4.3e-17 Score=140.00 Aligned_cols=138 Identities=14% Similarity=0.207 Sum_probs=101.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEe--cccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFS--NVFD 177 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s--~~l~ 177 (258)
.++.+|||||||+|..+..|++.|. +|+|+|+|+. ...+.++|+.+++++ ++||+|+| ++++
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhccc-ccccccceeeeeee
Confidence 3567999999999999999999886 8999999752 245788999998874 68999998 3677
Q ss_pred ccCC---hHHHHHHHHhcccCCcEEEEEecccc-------Cc-------C-------cC---------------------
Q 025071 178 HALY---PWKFVGEIERTLKPAGVCVLHVALSR-------RA-------D-------KY--------------------- 212 (258)
Q Consensus 178 h~~~---p~~~l~Ei~RVLKPGG~lii~v~~~~-------~~-------~-------~y--------------------- 212 (258)
|+.+ +.++++++++.|||||.+++.+.... .. + .+
T Consensus 114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKR 193 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhhhcccCceeecCCcEEEEEeeccCCcceeEEEEEEEecCCceEE
Confidence 7764 45689999999999999987653210 00 0 00
Q ss_pred ----CCCCCCChhHHHHHhhcCceEEeeeecCCCCe-------E-EEEEEeCC
Q 025071 213 ----SANDLFSVKPLVKLFRESELVAVRKVDGFGLD-------T-EVVFRKKK 253 (258)
Q Consensus 213 ----~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~-------~-~~~f~K~~ 253 (258)
.....|+.+++.+++++.|+..+...+.++.. + .++.||.|
T Consensus 194 ~~e~~~~~~~~~~~l~~~l~~~Gf~~i~~~~~~~~~~~~~~s~r~~~v~kk~~ 246 (246)
T d1y8ca_ 194 FDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLGG 246 (246)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEECC
T ss_pred EEEEEEEEcCCHHHHHHHHHHCCCEEEEEEecCCCCCCCCCCceEEEEEEecC
Confidence 01123688999999999998777666544433 1 56777754
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.70 E-value=2.6e-17 Score=134.24 Aligned_cols=118 Identities=15% Similarity=0.059 Sum_probs=86.6
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------------------CCceeeecCCCCCC-
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------------------PPLVIKGDFHAQPF- 163 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------------------~~~~~~aDa~~LPf- 163 (258)
.+.++.+|||+|||+|..+.+|++.|+ +|+|+|+|+. ...+..+|...++.
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 467899999999999999999999997 8999998731 11367788888875
Q ss_pred CCCCeeEEEec-cccccCC--hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcC
Q 025071 164 DNGTFDFEFSN-VFDHALY--PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRES 230 (258)
Q Consensus 164 ~d~SFD~V~s~-~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~ 230 (258)
..++||+|++. +++|+.+ ...++++++|+|||||.+++.................+.+++.+++...
T Consensus 96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~~~ 165 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGN 165 (201)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCSS
T ss_pred cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHhCCC
Confidence 45799999995 6777653 3568899999999999987764322111111112235778899988643
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.70 E-value=1.9e-17 Score=143.44 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=77.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC----------------CceeeecCCCCCC-CCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP----------------PLVIKGDFHAQPF-DNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~----------------~~~~~aDa~~LPf-~d~SFD~V~s~ 174 (258)
...++.+|||||||+|..+..+++.|...|+|+|+|+.. ..+.++|+...++ .+++||+|+|.
T Consensus 21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 21 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred hCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 467889999999999999999988887789999997521 2367899988887 47799999995
Q ss_pred -cccccCCh----HHHHHHHHhcccCCcEEEEEecc
Q 025071 175 -VFDHALYP----WKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 175 -~l~h~~~p----~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
+++|+.++ ..+++++.|+|||||++++.++.
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 88887654 36889999999999999987653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.2e-17 Score=140.30 Aligned_cols=118 Identities=10% Similarity=-0.003 Sum_probs=87.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------------------------CceeeecCC
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------------------------PLVIKGDFH 159 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------------------------~~~~~aDa~ 159 (258)
.+.++.+|||+|||+|..+.+|++.|+ +|+|||+|+.. ..+.++|+.
T Consensus 42 ~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 42 KGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 456788999999999999999999997 89999987521 125677877
Q ss_pred CCC-CCCCCeeEEEec-cccccC--ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcC
Q 025071 160 AQP-FDNGTFDFEFSN-VFDHAL--YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRES 230 (258)
Q Consensus 160 ~LP-f~d~SFD~V~s~-~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~ 230 (258)
.++ ..+++||+|+.. +++|+. +...+++++.|+|||||++++.................+..++.++|...
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~~ 195 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGKI 195 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTTT
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcCC
Confidence 774 668899999985 677765 34578899999999999987765432111111112235889999999764
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.69 E-value=1e-16 Score=136.16 Aligned_cols=124 Identities=16% Similarity=0.149 Sum_probs=88.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc---CCCcEEEEeCCCCC--------------Cc--eeeecCCCCCCCCCCeeEEEe
Q 025071 113 LFNESKALSIGARVGQEVAALKLV---GVSDSIGIDLVPRP--------------PL--VIKGDFHAQPFDNGTFDFEFS 173 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~---g~~~v~GvD~s~~~--------------~~--~~~aDa~~LPf~d~SFD~V~s 173 (258)
++++++|||||||||..+..|++. +..+|+|+|+|+.+ .. +..+|+ .+++.+.+|+|++
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~--~~~~~~~~d~i~~ 114 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI--RHVEIKNASMVIL 114 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT--TTCCCCSEEEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh--hccccccceeeEE
Confidence 568899999999999999888763 33489999997521 12 344454 4555668899988
Q ss_pred c-cccccC--ChHHHHHHHHhcccCCcEEEEEeccccCc-----------------CcCCC-------------CCCCCh
Q 025071 174 N-VFDHAL--YPWKFVGEIERTLKPAGVCVLHVALSRRA-----------------DKYSA-------------NDLFSV 220 (258)
Q Consensus 174 ~-~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-----------------~~y~~-------------~~~~s~ 220 (258)
. +++|+. ++.++++||+|+|||||.+++........ ..+.. ...++.
T Consensus 115 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 194 (225)
T d1im8a_ 115 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSI 194 (225)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCH
T ss_pred eeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCH
Confidence 5 666663 77899999999999999999864321100 01111 123588
Q ss_pred hHHHHHhhcCceEEeeee
Q 025071 221 KPLVKLFRESELVAVRKV 238 (258)
Q Consensus 221 ~~l~~lf~~~~~~~v~~v 238 (258)
+++..+++++|+.++..+
T Consensus 195 ~~~~~~L~~aGF~~v~~~ 212 (225)
T d1im8a_ 195 ETHKVRLKNVGFSQVELW 212 (225)
T ss_dssp HHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHcCCCceEEe
Confidence 899999999999877655
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=8.2e-17 Score=141.51 Aligned_cols=87 Identities=18% Similarity=0.178 Sum_probs=73.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEec-cccccC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHAL 180 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~ 180 (258)
..++.+|||||||+|..+..|++.+ ...++|+|+++. ...+.++|++++||+|++||+|++. +.+|
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-- 159 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-- 159 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC--
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH--
Confidence 4567899999999999999998864 347999999752 2357899999999999999999985 5554
Q ss_pred ChHHHHHHHHhcccCCcEEEEEeccc
Q 025071 181 YPWKFVGEIERTLKPAGVCVLHVALS 206 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~v~~~ 206 (258)
++|+.|||||||++++.++..
T Consensus 160 -----~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 160 -----AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp -----HHHHHHHEEEEEEEEEEEECT
T ss_pred -----HHHHHHHhCCCcEEEEEeeCC
Confidence 479999999999999988754
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=4.4e-16 Score=139.37 Aligned_cols=130 Identities=15% Similarity=0.053 Sum_probs=96.1
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCCC-------------CceeeecCCCCCCCCCCe
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPRP-------------PLVIKGDFHAQPFDNGTF 168 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~~-------------~~~~~aDa~~LPf~d~SF 168 (258)
.++.+++...+.+|.+|||||||.|..+.++++ .|+ +|+|+++|+.. ...+..+....++.+++|
T Consensus 49 k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f 127 (291)
T d1kpia_ 49 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 127 (291)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence 455566666789999999999999999998875 575 89999998531 112222333456788999
Q ss_pred eEEEe-ccccccCCh---------HHHHHHHHhcccCCcEEEEEeccccCc---------------------C--cCCCC
Q 025071 169 DFEFS-NVFDHALYP---------WKFVGEIERTLKPAGVCVLHVALSRRA---------------------D--KYSAN 215 (258)
Q Consensus 169 D~V~s-~~l~h~~~p---------~~~l~Ei~RVLKPGG~lii~v~~~~~~---------------------~--~y~~~ 215 (258)
|.|+| .+++|+.++ ..++++|+|+|||||+++++.-+.+.. . -++..
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg 207 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG 207 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCC
Confidence 99999 589999764 578999999999999999874322110 0 12344
Q ss_pred CCCChhHHHHHhhcCceE
Q 025071 216 DLFSVKPLVKLFRESELV 233 (258)
Q Consensus 216 ~~~s~~~l~~lf~~~~~~ 233 (258)
.+.|..++...+++.|+.
T Consensus 208 ~lps~~~~~~~~e~~gl~ 225 (291)
T d1kpia_ 208 RLPRISQVDYYSSNAGWK 225 (291)
T ss_dssp CCCCHHHHHHHHHHHTCE
T ss_pred CCCCHHHHHhhhcccccc
Confidence 667889999999888764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.64 E-value=5.6e-16 Score=136.82 Aligned_cols=91 Identities=15% Similarity=0.204 Sum_probs=77.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec-c
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
+.++.+|||||||+|..+..|++. + ..+|+|+|+++. ...+.++|++++|+++ +||+|+|. +
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~-~fD~v~~~~~ 103 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELND-KYDIAICHAF 103 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSS-CEEEEEEESC
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccC-CceEEEEehh
Confidence 557789999999999999998864 2 247999998742 1246889999999865 79999995 8
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++|+.+|..++++++|+|||||.+++..+
T Consensus 104 l~~~~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 104 LLHMTTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp GGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 99999999999999999999999988764
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.62 E-value=1.2e-15 Score=135.56 Aligned_cols=129 Identities=16% Similarity=0.103 Sum_probs=93.6
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCC----------------CceeeecCCCCCCCC
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRP----------------PLVIKGDFHAQPFDN 165 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~----------------~~~~~aDa~~LPf~d 165 (258)
.++.+++...+++|.+|||||||.|..+.++++. |. +|+|+|+|+.. ..+...|...+ +
T Consensus 40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~ 115 (280)
T d2fk8a1 40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---A 115 (280)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---C
T ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---c
Confidence 3455566556889999999999999999888764 65 89999997521 11333444433 4
Q ss_pred CCeeEEEe-ccccccCCh--HHHHHHHHhcccCCcEEEEEeccccC-------c--------------Cc--CCCCCCCC
Q 025071 166 GTFDFEFS-NVFDHALYP--WKFVGEIERTLKPAGVCVLHVALSRR-------A--------------DK--YSANDLFS 219 (258)
Q Consensus 166 ~SFD~V~s-~~l~h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~-------~--------------~~--y~~~~~~s 219 (258)
++||.|++ .+++|+.++ ..++++++|+|||||+++++.....+ . .+ ++...+.|
T Consensus 116 ~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS 195 (280)
T d2fk8a1 116 EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 195 (280)
T ss_dssp CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccc
Confidence 79999999 489999765 78899999999999999987432111 0 01 23345678
Q ss_pred hhHHHHHhhcCceEEe
Q 025071 220 VKPLVKLFRESELVAV 235 (258)
Q Consensus 220 ~~~l~~lf~~~~~~~v 235 (258)
..++.+.+.+.|+...
T Consensus 196 ~~~l~~~~e~aGf~v~ 211 (280)
T d2fk8a1 196 TEMMVEHGEKAGFTVP 211 (280)
T ss_dssp HHHHHHHHHHTTCBCC
T ss_pred hHhhhhhHHhhccccc
Confidence 8999999988886543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.6e-16 Score=136.23 Aligned_cols=121 Identities=12% Similarity=0.002 Sum_probs=87.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCCc----------------------------------------
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPL---------------------------------------- 152 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~~---------------------------------------- 152 (258)
..++.+|||||||+|..+..++..+..+|+|+|+|+....
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 3467799999999999887777666668999998742100
Q ss_pred ---------eeeecCCCCCCCCCCeeEEEec-cccccC----ChHHHHHHHHhcccCCcEEEEEeccccCc----CcCCC
Q 025071 153 ---------VIKGDFHAQPFDNGTFDFEFSN-VFDHAL----YPWKFVGEIERTLKPAGVCVLHVALSRRA----DKYSA 214 (258)
Q Consensus 153 ---------~~~aDa~~LPf~d~SFD~V~s~-~l~h~~----~p~~~l~Ei~RVLKPGG~lii~v~~~~~~----~~y~~ 214 (258)
.+..+....|+++++||+|++. +++|+. ++..++++|+|+|||||.+++........ .....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~ 208 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 208 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence 0112334568899999999994 888885 45678999999999999999875432110 00011
Q ss_pred CCCCChhHHHHHhhcCceE
Q 025071 215 NDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 215 ~~~~s~~~l~~lf~~~~~~ 233 (258)
...++.+++.++++++|+.
T Consensus 209 ~~~~~~~~~~~~l~~aGf~ 227 (257)
T d2a14a1 209 CVALEKGEVEQAVLDAGFD 227 (257)
T ss_dssp CCCCCHHHHHHHHHHTTEE
T ss_pred ccCCCHHHHHHHHHHCCCE
Confidence 2346899999999999975
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.60 E-value=4.5e-15 Score=132.40 Aligned_cols=129 Identities=17% Similarity=0.148 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC----------------CCceeeecCCCCCCC
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFD 164 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~ 164 (258)
+..+.+++...+.+|.+|||||||.|..+.++++ .|+ +|+|+++|+. ...+..+|...+|
T Consensus 49 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 125 (285)
T d1kpga_ 49 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-- 125 (285)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--
T ss_pred HHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--
Confidence 3455556666788999999999999999998775 575 8999999742 1235667776665
Q ss_pred CCCeeEEEe-ccccccCCh--HHHHHHHHhcccCCcEEEEEecccc-------Cc--------------Cc--CCCCCCC
Q 025071 165 NGTFDFEFS-NVFDHALYP--WKFVGEIERTLKPAGVCVLHVALSR-------RA--------------DK--YSANDLF 218 (258)
Q Consensus 165 d~SFD~V~s-~~l~h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~-------~~--------------~~--y~~~~~~ 218 (258)
++||.|+| .+++|+..+ ..+++++.|+|||||+++++.-... +. .+ ++...+.
T Consensus 126 -~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lP 204 (285)
T d1kpga_ 126 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP 204 (285)
T ss_dssp -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC
T ss_pred -ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCC
Confidence 68999999 589998644 7899999999999999988643211 00 01 2445567
Q ss_pred ChhHHHHHhhcCceEE
Q 025071 219 SVKPLVKLFRESELVA 234 (258)
Q Consensus 219 s~~~l~~lf~~~~~~~ 234 (258)
|..++..++.+.|+.-
T Consensus 205 sl~~~~~~~e~agf~v 220 (285)
T d1kpga_ 205 SIPMVQECASANGFTV 220 (285)
T ss_dssp CHHHHHHHHHTTTCEE
T ss_pred ChhhHHHHHHHhchhh
Confidence 8899999998888643
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.55 E-value=4.2e-14 Score=122.56 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=90.9
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC---------------CCCceeeecCCCCCCCCCCeeE
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVP---------------RPPLVIKGDFHAQPFDNGTFDF 170 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~---------------~~~~~~~aDa~~LPf~d~SFD~ 170 (258)
+.+...+....+|||||||+|..+..+++. +...++++|+.+ ....++.+|+.+ +. .++||+
T Consensus 72 ~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~-~~~~D~ 149 (253)
T d1tw3a2 72 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL-PRKADA 149 (253)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-SSCEEE
T ss_pred HHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchh-hc-ccchhh
Confidence 333445567789999999999999998875 335789999742 112467778754 22 357999
Q ss_pred EEec-cccccCChH--HHHHHHHhcccCCcEEEEEeccccCcCc--------------CCCCCCCChhHHHHHhhcCceE
Q 025071 171 EFSN-VFDHALYPW--KFVGEIERTLKPAGVCVLHVALSRRADK--------------YSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 171 V~s~-~l~h~~~p~--~~l~Ei~RVLKPGG~lii~v~~~~~~~~--------------y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
|++. +++|+.++. +++++++|+|||||++++.......... ......++.+++.++|+++|+.
T Consensus 150 v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~ 229 (253)
T d1tw3a2 150 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLV 229 (253)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred eeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCe
Confidence 9985 788887664 6789999999999999886432111000 0112335889999999999986
Q ss_pred E--eeeecC
Q 025071 234 A--VRKVDG 240 (258)
Q Consensus 234 ~--v~~v~g 240 (258)
. +..+..
T Consensus 230 ~~~v~~~~~ 238 (253)
T d1tw3a2 230 VEEVRQLPS 238 (253)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEECCC
Confidence 4 444433
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.2e-15 Score=130.88 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=70.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------CceeeecCC--CCCCCCCCeeEEEec---
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------PLVIKGDFH--AQPFDNGTFDFEFSN--- 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------~~~~~aDa~--~LPf~d~SFD~V~s~--- 174 (258)
.+|++|||||||+|..+.++++.+..+|+|||+++.. .....+++. ..++++++||.|+..
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence 5788999999999999999988765689999997521 123334433 447889999999842
Q ss_pred ---cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 ---VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ---~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+++|..++..+++|++|+|||||++++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 132 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 5678888999999999999999998774
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=2.4e-15 Score=132.66 Aligned_cols=87 Identities=17% Similarity=0.274 Sum_probs=66.3
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC-------------------ceeeecCC----CCCCCCCCeeEE
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP-------------------LVIKGDFH----AQPFDNGTFDFE 171 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~-------------------~~~~aDa~----~LPf~d~SFD~V 171 (258)
++.+|||+|||+|..+..|++.|. +|+|+|+|+.+. .+..++.. .+|+ +++||+|
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fd~v 133 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA-GDGFDAV 133 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC-TTCEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCC-CCCceEE
Confidence 567999999999999999999986 799999985311 12223322 2333 4689999
Q ss_pred Ee--ccccccCCh-------HHHHHHHHhcccCCcEEEEEe
Q 025071 172 FS--NVFDHALYP-------WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 172 ~s--~~l~h~~~p-------~~~l~Ei~RVLKPGG~lii~v 203 (258)
+| ++++|+.++ ..+++|++|+|||||++++.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 98 378888653 468999999999999999865
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.52 E-value=1.5e-14 Score=126.99 Aligned_cols=123 Identities=18% Similarity=0.291 Sum_probs=89.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------CceeeecCCCCCCCCCCeeEEEeccccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------PLVIKGDFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------~~~~~aDa~~LPf~d~SFD~V~s~~l~h 178 (258)
..++.+|||+|||+|..+.++++.|. +|+|+|+++.. ..+.++|... ++++++||+|+++.+.+
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH
T ss_pred cCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhccccc
Confidence 46889999999999999999988885 79999998632 2356677654 46788999999973332
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEe
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRK 251 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K 251 (258)
.....++++.|+|||||++++.--.. ...+++.+.+++.|+..+.....-+= ..++|+|
T Consensus 196 --~l~~l~~~~~~~LkpGG~lilSgil~-----------~~~~~v~~~~~~~Gf~~~~~~~~~~W-v~l~~~r 254 (254)
T d2nxca1 196 --LHAALAPRYREALVPGGRALLTGILK-----------DRAPLVREAMAGAGFRPLEEAAEGEW-VLLAYGR 254 (254)
T ss_dssp --HHHHHHHHHHHHEEEEEEEEEEEEEG-----------GGHHHHHHHHHHTTCEEEEEEEETTE-EEEEEEC
T ss_pred --cHHHHHHHHHHhcCCCcEEEEEecch-----------hhHHHHHHHHHHCCCEEEEEEEECCE-EEEEEeC
Confidence 23567799999999999998852110 02577888999888765554322122 4677775
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.4e-14 Score=126.51 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=82.9
Q ss_pred CCCEEEEECCCCCHHHHHHHhc------CC-CcEEEEeCCCCC--------------C----ceeeecCC------CCCC
Q 025071 115 NESKALSIGARVGQEVAALKLV------GV-SDSIGIDLVPRP--------------P----LVIKGDFH------AQPF 163 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~------g~-~~v~GvD~s~~~--------------~----~~~~aDa~------~LPf 163 (258)
+..+|||||||+|..+..+.+. +. ..++|+|+++.. . .+...+++ ..++
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK 119 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence 3448999999999987665431 11 257999986421 0 12222222 3477
Q ss_pred CCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCc---------CcC---CCCCCCChhHHHHHhhcC
Q 025071 164 DNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA---------DKY---SANDLFSVKPLVKLFRES 230 (258)
Q Consensus 164 ~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~---------~~y---~~~~~~s~~~l~~lf~~~ 230 (258)
++++||+|++. +++|+.+|..++++++|+|||||.+++.+...... ..+ .....++.+++.+++++.
T Consensus 120 ~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 199 (280)
T d1jqea_ 120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL 199 (280)
T ss_dssp SCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHHHH
T ss_pred CCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHC
Confidence 89999999994 89999999999999999999999998876533210 111 112346778899999988
Q ss_pred ceE
Q 025071 231 ELV 233 (258)
Q Consensus 231 ~~~ 233 (258)
|+.
T Consensus 200 G~~ 202 (280)
T d1jqea_ 200 GLK 202 (280)
T ss_dssp TCC
T ss_pred CCc
Confidence 864
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.50 E-value=2.1e-14 Score=126.96 Aligned_cols=95 Identities=21% Similarity=0.334 Sum_probs=79.4
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC------------------CCceeeecCCCCCCCCC
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR------------------PPLVIKGDFHAQPFDNG 166 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~------------------~~~~~~aDa~~LPf~d~ 166 (258)
++....+.+|++|||+|||+|..+.+|++. | ..+|+++|+++. ...+.++|+.+.+|+++
T Consensus 88 Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~ 167 (264)
T d1i9ga_ 88 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDG 167 (264)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTT
T ss_pred HHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCC
Confidence 344456889999999999999999999864 4 348999998631 12467889999999999
Q ss_pred CeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEecc
Q 025071 167 TFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 167 SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
+||.|++ |+++|+.++.++.|+|||||++++.+|+
T Consensus 168 ~fDaV~l----dlp~P~~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 168 SVDRAVL----DMLAPWEVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp CEEEEEE----ESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CcceEEE----ecCCHHHHHHHHHhccCCCCEEEEEeCc
Confidence 9999986 5789999999999999999999998764
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=7.6e-15 Score=128.27 Aligned_cols=121 Identities=15% Similarity=0.004 Sum_probs=83.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCCc-----------------------------------------
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPL----------------------------------------- 152 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~~----------------------------------------- 152 (258)
..+.++||||||+|......+..+..+|+|+|.++....
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 132 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence 467899999999997765444444568999998742100
Q ss_pred ----eeeecC------CCCCCCCCCeeEEEec-cccccC----ChHHHHHHHHhcccCCcEEEEEeccccCcCcCC----
Q 025071 153 ----VIKGDF------HAQPFDNGTFDFEFSN-VFDHAL----YPWKFVGEIERTLKPAGVCVLHVALSRRADKYS---- 213 (258)
Q Consensus 153 ----~~~aDa------~~LPf~d~SFD~V~s~-~l~h~~----~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~---- 213 (258)
+...|. ...++++++||+|++. +++|+. ++.+++++++|+|||||.+++............
T Consensus 133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~ 212 (263)
T d2g72a1 133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 212 (263)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCccc
Confidence 111222 2445677899999985 788875 457789999999999999988744321100001
Q ss_pred CCCCCChhHHHHHhhcCceEE
Q 025071 214 ANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 214 ~~~~~s~~~l~~lf~~~~~~~ 234 (258)
....++.+++.+++.++|+..
T Consensus 213 ~~~~~t~e~v~~~l~~aGf~v 233 (263)
T d2g72a1 213 TVVPVSEEEVREALVRSGYKV 233 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEEE
T ss_pred ccCCCCHHHHHHHHHHCCCeE
Confidence 122358999999999999753
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.50 E-value=3.9e-14 Score=118.15 Aligned_cols=92 Identities=15% Similarity=0.127 Sum_probs=72.1
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------------CCceeeecCCCCCCCCCCeeEEEe
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------------PPLVIKGDFHAQPFDNGTFDFEFS 173 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------------~~~~~~aDa~~LPf~d~SFD~V~s 173 (258)
-...++.+|||+|||+|..+..+++.+ .+|+|+|+++. ...+..+|..+ ++++++||+|++
T Consensus 48 l~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~ 125 (194)
T d1dusa_ 48 VVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIIT 125 (194)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEE
T ss_pred CCcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEE
Confidence 345678999999999999999998765 58999998742 12356778766 778999999999
Q ss_pred c-cccccCCh-HHHHHHHHhcccCCcEEEEEec
Q 025071 174 N-VFDHALYP-WKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 174 ~-~l~h~~~p-~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+ .+++..+. ..+++++.|+|||||.+++.+.
T Consensus 126 ~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 126 NPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 7 44444433 5678999999999999887653
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.3e-14 Score=131.18 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=82.0
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC------------------------CCceeeec
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR------------------------PPLVIKGD 157 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~------------------------~~~~~~aD 157 (258)
.++.+++...+.++.+|||||||+|..+..++. .|+..++|+|+++. ...++++|
T Consensus 139 ~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 139 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 344555555688899999999999999988765 56668999998742 23478999
Q ss_pred CCCCCCCCCCe--eEEEeccccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 158 FHAQPFDNGTF--DFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 158 a~~LPf~d~SF--D~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+.++||.++.| |+|+++.+.|..+...+++|+.|+|||||+++..-+
T Consensus 219 ~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~ 267 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP 267 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred ccccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence 99999998877 567777777877888999999999999999987543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.49 E-value=7.5e-15 Score=127.05 Aligned_cols=126 Identities=17% Similarity=0.175 Sum_probs=88.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCCC-------------CceeeecCCC-CCCCCCCeeEEEe-cc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPRP-------------PLVIKGDFHA-QPFDNGTFDFEFS-NV 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~~-------------~~~~~aDa~~-LPf~d~SFD~V~s-~~ 175 (258)
.+.++.+|||+|||+|..+..|++.+ ...|+|+|+++.+ ...+.+|+.. .++.+..+|++++ ..
T Consensus 71 ~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~ 150 (230)
T d1g8sa_ 71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED 150 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecc
Confidence 46789999999999999999998864 3579999997521 1235555543 3467788888766 36
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeec
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVD 239 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~ 239 (258)
+.|..++..+++|+.|+|||||.+++....... +. ....-...++..+.+++.|+..+..++
T Consensus 151 ~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~-d~-~~~~~~~~~e~~~~L~~aGF~ive~id 212 (230)
T d1g8sa_ 151 VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSI-DV-TKDPKEIFKEQKEILEAGGFKIVDEVD 212 (230)
T ss_dssp CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGT-CS-SSCHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred ccchHHHHHHHHHHHHhcccCceEEEEeecccc-CC-CCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence 777888899999999999999998886432111 00 000001346677888888887666654
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=7.3e-14 Score=125.56 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=72.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec----c
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN----V 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~----~ 175 (258)
++.+|||||||+|.++..+++.|...|+|+|.++. ...++.+|++++++++++||+|++. .
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~ 117 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF 117 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEeccee
Confidence 67899999999999999999999878999998751 1236789999999999999999995 3
Q ss_pred ccccCChHHHHHHHHhcccCCcEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCV 200 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~li 200 (258)
+.+......++.++.|+|||||+++
T Consensus 118 ~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 118 LLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eccchhHHHHHHHHHhccCCCeEEE
Confidence 4555567888999999999999874
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.46 E-value=8.4e-14 Score=122.02 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=83.6
Q ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeE
Q 025071 109 QRHFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDF 170 (258)
Q Consensus 109 ~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~ 170 (258)
....+.+|.+|||+|||+|..+.+|++. | ...|+++|.++. ...+..+|+.+. +++++||.
T Consensus 79 ~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~ 157 (250)
T d1yb2a1 79 MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDA 157 (250)
T ss_dssp --CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEE
T ss_pred HHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeee
Confidence 3346789999999999999999998864 3 357999998641 123567787765 57889999
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEee
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
|+++ +++|+.++.++.|+|||||++++.+|+-. ..+.+.+.+++.|+.++.
T Consensus 158 V~ld----~p~p~~~l~~~~~~LKpGG~lv~~~P~i~-----------Qv~~~~~~l~~~gf~~i~ 208 (250)
T d1yb2a1 158 VIAD----IPDPWNHVQKIASMMKPGSVATFYLPNFD-----------QSEKTVLSLSASGMHHLE 208 (250)
T ss_dssp EEEC----CSCGGGSHHHHHHTEEEEEEEEEEESSHH-----------HHHHHHHHSGGGTEEEEE
T ss_pred eeec----CCchHHHHHHHHHhcCCCceEEEEeCCcC-----------hHHHHHHHHHHCCCceeE
Confidence 9874 56888999999999999999998876321 134455666777776543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.44 E-value=1.2e-13 Score=117.52 Aligned_cols=92 Identities=17% Similarity=0.087 Sum_probs=71.4
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCC-------------CceeeecCCCCCCCCCCeeEEEe--cc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRP-------------PLVIKGDFHAQPFDNGTFDFEFS--NV 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~-------------~~~~~aDa~~LPf~d~SFD~V~s--~~ 175 (258)
.++++.+|||+|||+|..+..|++. +...|+|+|+++.. ...+.+|+...+..+..+|.+.. ..
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~ 132 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD 132 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEec
Confidence 4678999999999999999999874 44579999998531 23567788877666555544432 25
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+.|..++..+++|++|+|||||.+++..
T Consensus 133 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 133 IAQKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp CCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 7777788899999999999999998864
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=1.5e-13 Score=117.00 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=73.3
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCe
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTF 168 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SF 168 (258)
.+++...++++.+|||||||+|..+..|++. | ...|+++|+++. ...++++|+.+.++.+++|
T Consensus 66 ~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~f 145 (213)
T d1dl5a1 66 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPY 145 (213)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccch
Confidence 3444446889999999999999999888763 3 247999998642 1236778999888899999
Q ss_pred eEEEec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 169 DFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 169 D~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|+|+++ +++|++ .++.++|||||++++.+.
T Consensus 146 D~I~~~~~~~~~p------~~l~~~LkpGG~lv~pv~ 176 (213)
T d1dl5a1 146 DVIFVTVGVDEVP------ETWFTQLKEGGRVIVPIN 176 (213)
T ss_dssp EEEEECSBBSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred hhhhhhccHHHhH------HHHHHhcCCCcEEEEEEC
Confidence 999995 777765 468899999999988553
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.44 E-value=1.5e-13 Score=113.95 Aligned_cols=89 Identities=17% Similarity=0.124 Sum_probs=73.7
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
..+.++.+|||+|||+|..+.++++.+ .+|+|+|+++. ...++++|+.++++++++||.|+++
T Consensus 29 l~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~ 107 (186)
T d1l3ia_ 29 AEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVG 107 (186)
T ss_dssp HCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEES
T ss_pred cCCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEe
Confidence 357789999999999999999998765 58999998742 2247889999999999999999986
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
... +...+++++.++|||||++++..
T Consensus 108 ~~~~---~~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 108 GSGG---ELQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp CCTT---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred Cccc---cchHHHHHHHHHhCcCCEEEEEe
Confidence 333 45678999999999999998764
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.44 E-value=9.3e-13 Score=114.65 Aligned_cols=124 Identities=19% Similarity=0.170 Sum_probs=85.6
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC---------------CCCceeeecCCCCCCCCCCeeEEEec-
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVP---------------RPPLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~---------------~~~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
.+....+|||||||+|..+..+++. +..+++++|+.. ....++.+|... |.+ ++||+|++.
T Consensus 78 d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~ 155 (256)
T d1qzza2 78 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSF 155 (256)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEES
T ss_pred CCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccc
Confidence 4566789999999999999999875 334799999731 112345566543 444 469999985
Q ss_pred cccccCChH--HHHHHHHhcccCCcEEEEEeccccCcCc---------------CCCCCCCChhHHHHHhhcCceEEeee
Q 025071 175 VFDHALYPW--KFVGEIERTLKPAGVCVLHVALSRRADK---------------YSANDLFSVKPLVKLFRESELVAVRK 237 (258)
Q Consensus 175 ~l~h~~~p~--~~l~Ei~RVLKPGG~lii~v~~~~~~~~---------------y~~~~~~s~~~l~~lf~~~~~~~v~~ 237 (258)
+++|+.+++ +++++++|+|||||+++|........+. ......++.+++.++|+++|+..+..
T Consensus 156 vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~ 235 (256)
T d1qzza2 156 VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE 235 (256)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred cccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEE
Confidence 788877653 5689999999999999887432111010 01123368899999999999865443
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=1.6e-13 Score=122.74 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEecc----
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNV---- 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~---- 175 (258)
++++|||||||+|..+..+++.|..+|+|+|.++. ...++++|++++++++++||+|++..
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~ 112 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 112 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeee
Confidence 67899999999999999988888778999998752 12467899999999999999999852
Q ss_pred ccccCChHHHHHHHHhcccCCcEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCV 200 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~li 200 (258)
+.+-...+.++.++.|+|||||.++
T Consensus 113 l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 113 LFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp BTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eccHHHHHHHHHHHHhcCCCCeEEE
Confidence 3333456788999999999999875
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=3.9e-13 Score=119.66 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=71.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEecccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNVFD 177 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~l~ 177 (258)
..++++|||||||+|.++..+++.|..+|+|+|.++. ...++.+|++++++++++||+|++..+.
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~ 112 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG 112 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence 3468899999999999999999999878999998752 1246889999999999999999996333
Q ss_pred ccC----ChHHHHHHHHhcccCCcEEEE
Q 025071 178 HAL----YPWKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 178 h~~----~p~~~l~Ei~RVLKPGG~lii 201 (258)
|.. .++.++.+..|+|||||+++-
T Consensus 113 ~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 113 YFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eecccccccHHHHHHHHhcCCCCcEEec
Confidence 322 345677788999999998763
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.39 E-value=4.8e-13 Score=115.45 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=70.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC-------------CceeeecC---CCCCCCCCCeeEEEe
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP-------------PLVIKGDF---HAQPFDNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~-------------~~~~~aDa---~~LPf~d~SFD~V~s 173 (258)
.+.+|.+|||+|||+|..+..|++. | ...|+|+|+++.. ...+.+|+ +..+...+++|+|++
T Consensus 70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~ 149 (227)
T d1g8aa_ 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE
Confidence 4678999999999999999999874 4 3479999997521 12345554 344556688999988
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
.+.|..+++.+++++.|+|||||++++.+
T Consensus 150 -d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 150 -DVAQPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp -CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -EccccchHHHHHHHHHHhcccCCeEEEEE
Confidence 46666778889999999999999998864
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.37 E-value=5.2e-13 Score=113.33 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=68.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCCC--CCCCCeeEEEecc-
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQP--FDNGTFDFEFSNV- 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~LP--f~d~SFD~V~s~~- 175 (258)
++..|||||||+|..+..|++. ....++|+|+++. ...++.+|+..++ |+++++|.|++..
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 3457999999999999999875 3468999998632 2346889998887 8999999998852
Q ss_pred ccccCCh--------HHHHHHHHhcccCCcEEEEEe
Q 025071 176 FDHALYP--------WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 l~h~~~p--------~~~l~Ei~RVLKPGG~lii~v 203 (258)
..|...+ ..++++++|+|||||.+.+.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 2222111 468999999999999998865
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.1e-12 Score=112.57 Aligned_cols=87 Identities=24% Similarity=0.311 Sum_probs=70.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC--------------------CCceeeecCCCCCCCCCCee
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR--------------------PPLVIKGDFHAQPFDNGTFD 169 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~--------------------~~~~~~aDa~~LPf~d~SFD 169 (258)
.++++.+|||||||+|..+..|++. | ...|+|+|+++. ...+..+|+...++++++||
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence 4678999999999999998888763 3 347999998641 12357789999999999999
Q ss_pred EEEec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 170 FEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 170 ~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
.|+++ +++|++ .++.++|||||++++-+.
T Consensus 153 ~I~~~~~~~~ip------~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 153 AIHVGAAAPVVP------QALIDQLKPGGRLILPVG 182 (224)
T ss_dssp EEEECSBBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred hhhhhcchhhcC------HHHHhhcCCCcEEEEEEc
Confidence 99985 677765 478899999999998654
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.35 E-value=1.9e-12 Score=114.09 Aligned_cols=115 Identities=16% Similarity=0.209 Sum_probs=84.8
Q ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC----------------CceeeecCCCCCCCCCCee
Q 025071 108 KQRHFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP----------------PLVIKGDFHAQPFDNGTFD 169 (258)
Q Consensus 108 ~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~----------------~~~~~aDa~~LPf~d~SFD 169 (258)
+....+.++.+|||+|||+|..+.+|++. | ..+|+|+|+++.. ..+..+|. ..++.+..||
T Consensus 96 i~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~-~~~~~~~~~D 174 (266)
T d1o54a_ 96 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI-SEGFDEKDVD 174 (266)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG-GGCCSCCSEE
T ss_pred HHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc-ccccccccee
Confidence 34456889999999999999999999864 3 3479999987421 12334443 3357778899
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
.|+. |+++|+.+++++.|+|||||++++.+|+-. ....+.+.+++.|+.++..+
T Consensus 175 ~V~~----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~-----------Qv~~~~~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 175 ALFL----DVPDPWNYIDKCWEALKGGGRFATVCPTTN-----------QVQETLKKLQELPFIRIEVW 228 (266)
T ss_dssp EEEE----CCSCGGGTHHHHHHHEEEEEEEEEEESSHH-----------HHHHHHHHHHHSSEEEEEEE
T ss_pred eeEe----cCCCHHHHHHHHHhhcCCCCEEEEEeCccc-----------HHHHHHHHHHHCCceeEEEE
Confidence 8875 567899999999999999999999876421 13556666777888765544
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=8.7e-12 Score=112.74 Aligned_cols=92 Identities=21% Similarity=0.182 Sum_probs=69.0
Q ss_pred hcCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC--------------------------CCceeeecCCCC
Q 025071 110 RHFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR--------------------------PPLVIKGDFHAQ 161 (258)
Q Consensus 110 ~~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~--------------------------~~~~~~aDa~~L 161 (258)
...+.+|++|||+|||+|..+.+|++. | ...|+++|+++. ...+..+|+...
T Consensus 93 ~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~ 172 (324)
T d2b25a1 93 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA 172 (324)
T ss_dssp HHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred HhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc
Confidence 346889999999999999999999864 4 347999998531 113566777665
Q ss_pred C--CCCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEecc
Q 025071 162 P--FDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 162 P--f~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
. +++.+||.|+.. +++|+.++.++.|+|||||++++.+|+
T Consensus 173 ~~~~~~~~fD~V~LD----~p~P~~~l~~~~~~LKpGG~lv~~~P~ 214 (324)
T d2b25a1 173 TEDIKSLTFDAVALD----MLNPHVTLPVFYPHLKHGGVCAVYVVN 214 (324)
T ss_dssp C-------EEEEEEC----SSSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred ccccCCCCcceEeec----CcCHHHHHHHHHHhccCCCEEEEEeCC
Confidence 4 367899999873 567889999999999999999998763
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.29 E-value=7.8e-13 Score=123.12 Aligned_cols=101 Identities=22% Similarity=0.201 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCCCC-------------------------ceee
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPRPP-------------------------LVIK 155 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~~~-------------------------~~~~ 155 (258)
.++..+++...+.++.+|||||||+|..+..++. .|+..|+|||+++.+. ....
T Consensus 203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~ 282 (406)
T d1u2za_ 203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 282 (406)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence 3455556656788999999999999999988875 5777899999975321 0123
Q ss_pred ecCCCCCCCC---CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 156 GDFHAQPFDN---GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 156 aDa~~LPf~d---~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
++....++.+ ..+|+|+++.+.|..+...+++|+.|+|||||+++..
T Consensus 283 ~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 283 KSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred echhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 4444333322 3567888876777777788999999999999998875
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.27 E-value=1e-11 Score=105.19 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=68.8
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCCC--CCCCCeeEEEeccc
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQP--FDNGTFDFEFSNVF 176 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~LP--f~d~SFD~V~s~~l 176 (258)
....|||||||+|..+..+++. +...++|+|++.. ...+..+|+..++ |+++++|.|++..-
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 3457999999999999999875 4467999998642 1346889998887 88999999987532
Q ss_pred cccCC---------hHHHHHHHHhcccCCcEEEEEe
Q 025071 177 DHALY---------PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 177 ~h~~~---------p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+.++. ...++++++|+|||||.+.+.+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 22211 2578899999999999998865
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.24 E-value=1e-11 Score=106.85 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=70.4
Q ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 108 KQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 108 ~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
++...+.++.+|||||||+|..+..|++.+ .+|+++|.++. ...++.+|+..-..+++.||.|+++
T Consensus 63 l~~L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~ 141 (224)
T d1vbfa_ 63 LDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVW 141 (224)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEES
T ss_pred HHHhhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhh
Confidence 344467899999999999999999998875 58999997531 2346788877655567889999985
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++++++ .++.+.|||||++++-+.
T Consensus 142 ~a~~~ip------~~l~~qLk~GGrLV~pvg 166 (224)
T d1vbfa_ 142 ATAPTLL------CKPYEQLKEGGIMILPIG 166 (224)
T ss_dssp SBBSSCC------HHHHHTEEEEEEEEEEEC
T ss_pred cchhhhh------HHHHHhcCCCCEEEEEEc
Confidence 777765 467789999999988553
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=4.4e-10 Score=99.15 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=88.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec--c
Q 025071 114 FNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN--V 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~--~ 175 (258)
..+.+|||+|||+|..+..++. .....|+|+|+++. ...++++|..+ ++++++||+|+|| .
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPY 185 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPY 185 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCC
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchh
Confidence 4567899999999999998876 44568999999742 23467777654 6678899999997 2
Q ss_pred cc------------ccC------------ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc
Q 025071 176 FD------------HAL------------YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 176 l~------------h~~------------~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~ 231 (258)
+. |-+ ...+.+++..+.|+|||.+++.+.. + ..+.+.+++.+.|
T Consensus 186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~---------~---q~~~v~~~l~~~g 253 (274)
T d2b3ta1 186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW---------Q---QGEAVRQAFILAG 253 (274)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS---------S---CHHHHHHHHHHTT
T ss_pred hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc---------h---HHHHHHHHHHHCC
Confidence 21 100 1135778999999999999996531 1 2477889999888
Q ss_pred eEEeeee-cCCCCeEEEEE
Q 025071 232 LVAVRKV-DGFGLDTEVVF 249 (258)
Q Consensus 232 ~~~v~~v-~g~~l~~~~~f 249 (258)
+..+..+ |-.|.++.++-
T Consensus 254 f~~i~~~kDl~g~~R~v~~ 272 (274)
T d2b3ta1 254 YHDVETCRDYGDNERVTLG 272 (274)
T ss_dssp CTTCCEEECTTSSEEEEEE
T ss_pred CCeEEEEECCCCCceEEEE
Confidence 7655433 66777776554
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.99 E-value=8.4e-10 Score=94.39 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=67.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc----CC---CcEEEEeCCCC--------------------CCceeeecCCCCCCC
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV----GV---SDSIGIDLVPR--------------------PPLVIKGDFHAQPFD 164 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~----g~---~~v~GvD~s~~--------------------~~~~~~aDa~~LPf~ 164 (258)
.+.++.+|||||||+|..+..|++. |. .+|+++|..+. ...+..+|+.+...+
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 156 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence 4678999999999999998877653 32 36999997541 124678898888778
Q ss_pred CCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 165 NGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 165 d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++.||.|+++ ++++.+ ..+.+.|||||++++-+.
T Consensus 157 ~~~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 157 NAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG 191 (223)
T ss_dssp GCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred ccceeeEEEEeechhch------HHHHHhcCCCcEEEEEEe
Confidence 8899999985 677655 357889999999988653
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.99 E-value=5.8e-09 Score=90.11 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=89.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCC--------CCCceeeecCCCCCCCCCCeeEEEec-cccccCCh
Q 025071 113 LFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVP--------RPPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYP 182 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~--------~~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p 182 (258)
.....+|||||||+|..+..+++ .+..+++..|+.. ....++.+|+.+ |.+ ..|++++. +++++.+.
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~de 155 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWSDE 155 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCC--CEEEEEEESSGGGSCHH
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCccc-ccc--cceEEEEehhhhhCCHH
Confidence 45568999999999999998876 4445788999621 123466778653 444 34999885 77777654
Q ss_pred H--HHHHHHHhcccCCcEEEEEecc---ccCcCc--------------CCCCCCCChhHHHHHhhcCceEEeeeec--CC
Q 025071 183 W--KFVGEIERTLKPAGVCVLHVAL---SRRADK--------------YSANDLFSVKPLVKLFRESELVAVRKVD--GF 241 (258)
Q Consensus 183 ~--~~l~Ei~RVLKPGG~lii~v~~---~~~~~~--------------y~~~~~~s~~~l~~lf~~~~~~~v~~v~--g~ 241 (258)
+ +.++.++++|+|||++++.-.. .+.... .....-++.+|+.++|+++|+..++.+. +.
T Consensus 156 ~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~~ 235 (244)
T d1fp1d2 156 KCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFN 235 (244)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETT
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEEecCCC
Confidence 3 5689999999999999887321 111000 0112235789999999999987776542 23
Q ss_pred CCeEEEEEEe
Q 025071 242 GLDTEVVFRK 251 (258)
Q Consensus 242 ~l~~~~~f~K 251 (258)
.+ ..+.++|
T Consensus 236 ~~-~viE~~K 244 (244)
T d1fp1d2 236 SL-GVMEFYK 244 (244)
T ss_dssp TE-EEEEEEC
T ss_pred CE-EEEEEeC
Confidence 33 4455554
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.98 E-value=6.3e-10 Score=94.86 Aligned_cols=91 Identities=19% Similarity=0.183 Sum_probs=70.7
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC---------------CCCceeeecCCCCCCCCCCeeE
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVP---------------RPPLVIKGDFHAQPFDNGTFDF 170 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~---------------~~~~~~~aDa~~LPf~d~SFD~ 170 (258)
+++...+.++.+|||||||+|..+..|++. | .+|+++|..+ ....+.++|+.....+++.||.
T Consensus 70 ml~~L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~ 148 (215)
T d1jg1a_ 70 MLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDV 148 (215)
T ss_dssp HHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHhhccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCccee
Confidence 333346789999999999999999988875 5 4699999753 1235788998887777899999
Q ss_pred EEec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 171 EFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 171 V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|+++ ++++.+ ..+..-|||||++++-+.
T Consensus 149 Iiv~~a~~~ip------~~l~~qL~~gGrLv~pv~ 177 (215)
T d1jg1a_ 149 IIVTAGAPKIP------EPLIEQLKIGGKLIIPVG 177 (215)
T ss_dssp EEECSBBSSCC------HHHHHTEEEEEEEEEEEC
T ss_pred EEeecccccCC------HHHHHhcCCCCEEEEEEc
Confidence 9985 677655 346678999999988653
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.83 E-value=1.4e-09 Score=97.43 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=68.4
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCC----CCCCCCCeeEE
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHA----QPFDNGTFDFE 171 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~----LPf~d~SFD~V 171 (258)
.+.++.+|||+|||+|..+..++..|..+|+++|+++. ...++++|+.+ ++..+++||+|
T Consensus 142 ~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 142 WVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp GCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 35678999999999999999888888778999998742 12356777643 45567899999
Q ss_pred Eec--cc-cccC-------ChHHHHHHHHhcccCCcEEEEEe
Q 025071 172 FSN--VF-DHAL-------YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 172 ~s~--~l-~h~~-------~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+++ .+ .+-. +-.+.+....++|||||+++...
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s 263 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS 263 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 995 22 1111 12346788899999999998865
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.83 E-value=1.2e-09 Score=87.42 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=63.0
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCC-CCCCCCCeeEEEecccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHA-QPFDNGTFDFEFSNVFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~-LPf~d~SFD~V~s~~l~ 177 (258)
++.+|||+|||+|..+.+.+..|..+|+++|.++. ...++++|+.. ++...++||+|+++---
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 68899999999999998777788889999998642 12467778765 45678899999985100
Q ss_pred ccCChHHHHHHH--HhcccCCcEEEEEec
Q 025071 178 HALYPWKFVGEI--ERTLKPAGVCVLHVA 204 (258)
Q Consensus 178 h~~~p~~~l~Ei--~RVLKPGG~lii~v~ 204 (258)
....-...+..+ .+.|+|||.+++..+
T Consensus 94 ~~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 94 AKETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 000012233333 478999999988643
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.80 E-value=3e-09 Score=92.79 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=68.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEeccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSNVF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~~l 176 (258)
+.++.+|||+|||+|..+..+++.|..+|+|+|+++. ...+.++|+..++- .+.||.|+++-.
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC
Confidence 5689999999999999999888877668999998752 12467889988764 478999998633
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEE
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
. ....++.++.++|||||++.+.
T Consensus 184 ~---~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 184 V---RTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp S---SGGGGHHHHHHHEEEEEEEEEE
T ss_pred C---chHHHHHHHHhhcCCCCEEEEE
Confidence 2 2345678899999999998665
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.73 E-value=1.3e-08 Score=85.45 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=49.3
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
+.+ .|.+|||+|||+|.++..++..|...|+|+|+++. ...++++|+.+++ +.||+|++|
T Consensus 45 ~dl-~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~N 114 (197)
T d1ne2a_ 45 GNI-GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMN 114 (197)
T ss_dssp TSS-BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEEC
T ss_pred CCC-CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeC
Confidence 344 58899999999999988888888778999998742 2357889988875 789999997
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.72 E-value=9e-08 Score=82.33 Aligned_cols=121 Identities=10% Similarity=0.081 Sum_probs=82.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC--------CCCceeeecCCCCCCCCCCeeEEEec-cccccCChH-
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVP--------RPPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPW- 183 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~--------~~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~- 183 (258)
...+|||||||+|..+..+++. +..+++..|+.+ ....++.+|+.+ |.+ .+|++++. ++|++.+.+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d~~~ 156 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTDKDC 156 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHH
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCccc-CCC--CCcEEEEEeecccCChHHH
Confidence 3468999999999999888764 445799999621 223567788765 433 57999884 777777554
Q ss_pred -HHHHHHHhcccCC---cEEEEEeccc---cCcC-------------cCCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 184 -KFVGEIERTLKPA---GVCVLHVALS---RRAD-------------KYSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 184 -~~l~Ei~RVLKPG---G~lii~v~~~---~~~~-------------~y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
+.++.+++.|+|| |++++..... .... ......-++.++..++|+++|+..++.+
T Consensus 157 ~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i~ 231 (244)
T d1fp2a2 157 LRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKIS 231 (244)
T ss_dssp HHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEEE
Confidence 5789999999999 6676653211 1100 0011223578999999999997665544
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.70 E-value=3.8e-07 Score=74.96 Aligned_cols=139 Identities=19% Similarity=0.209 Sum_probs=83.5
Q ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCCC------ceeeecCCCCCCCCCCeeEEEec-cc--
Q 025071 108 KQRHFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRPP------LVIKGDFHAQPFDNGTFDFEFSN-VF-- 176 (258)
Q Consensus 108 ~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~~------~~~~aDa~~LPf~d~SFD~V~s~-~l-- 176 (258)
++.....++.+|||.|||+|.++..+.+. + ...++|+|+++... .+..+|....+ ..+.||+|+++ -+
T Consensus 12 ~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~ii~npP~~~ 90 (223)
T d2ih2a1 12 VSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWE-PGEAFDLILGNPPYGI 90 (223)
T ss_dssp HHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCC-CSSCEEEEEECCCCCC
T ss_pred HHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccceeeeeehhccc-cccccceecccCcccc
Confidence 33334567889999999999988777542 3 34699999976432 34566665544 34789999996 11
Q ss_pred -cccCC--------------------------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhc
Q 025071 177 -DHALY--------------------------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRE 229 (258)
Q Consensus 177 -~h~~~--------------------------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~ 229 (258)
.+... -..++....+.|||||++++.+|..-- ... +.+.+.+.+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l----~~~---~~~~lR~~l~~ 163 (223)
T d2ih2a1 91 VGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWL----VLE---DFALLREFLAR 163 (223)
T ss_dssp BSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGG----TCG---GGHHHHHHHHH
T ss_pred ccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeec----cCc---chHHHHHHHHh
Confidence 11000 124467888999999999998874311 111 23455555554
Q ss_pred CceEEeeee----cCCCCeE-EEEEEeCCc
Q 025071 230 SELVAVRKV----DGFGLDT-EVVFRKKKK 254 (258)
Q Consensus 230 ~~~~~v~~v----~g~~l~~-~~~f~K~~~ 254 (258)
...+.+... .+-+..+ .++++|.++
T Consensus 164 ~~~i~i~~~~~~F~~~~v~t~i~~~~k~~~ 193 (223)
T d2ih2a1 164 EGKTSVYYLGEVFPQKKVSAVVIRFQKSGK 193 (223)
T ss_dssp HSEEEEEEEESCSTTCCCCEEEEEEESSSC
T ss_pred cCCEEEEcchhcCCCCCCcEEEEEEEeCCC
Confidence 443333222 2233334 666777543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.70 E-value=3.1e-09 Score=95.07 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=64.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCC----CCCCCCCeeEEEec-
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHA----QPFDNGTFDFEFSN- 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~----LPf~d~SFD~V~s~- 174 (258)
.+.+|||++||+|..+.+++. |..+|+++|+++. ...++++|+.+ ++...++||+|+++
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 578999999999999988875 4468999998742 12356777643 45567899999985
Q ss_pred -cccccC--------ChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 -VFDHAL--------YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 -~l~h~~--------~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
.+.... +-...+..+.++|||||.++...
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~s 261 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS 261 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 222111 12346678899999999988764
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.69 E-value=1.6e-08 Score=84.72 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=46.0
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
.|.+|||+|||+|..+..++..|...|+|+|+++. ...+..+|+..+ ++.||+|+++
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~n 116 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMN 116 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEEC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEc
Confidence 57899999999999998888888778999999742 123677777665 4679999997
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.69 E-value=8e-08 Score=82.29 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=79.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------CCceeeecCCCCCCCCCCeeEEEe-ccccccCC--
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR--------PPLVIKGDFHAQPFDNGTFDFEFS-NVFDHALY-- 181 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~--------~~~~~~aDa~~LPf~d~SFD~V~s-~~l~h~~~-- 181 (258)
....+|||||||+|..+..+++. +..++++.|+.+. ...++.+|..+ |.+. .|+++. +.++++.+
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~~ 156 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSDEH 156 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCHHH
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccc-cCCC--cceEEEEEEeecCCHHH
Confidence 34578999999999999988764 4457999997321 12356677643 3333 355555 45655553
Q ss_pred hHHHHHHHHhcccCCcEEEEEeccc--cCcCc-------C---------CCCCCCChhHHHHHhhcCceEEeeee
Q 025071 182 PWKFVGEIERTLKPAGVCVLHVALS--RRADK-------Y---------SANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG~lii~v~~~--~~~~~-------y---------~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
....+++++++|+|||++++..... ..... + ....-++.++..++++++|+..++.+
T Consensus 157 ~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~ 231 (243)
T d1kyza2 157 CLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVH 231 (243)
T ss_dssp HHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEE
Confidence 3467899999999999888863321 11100 0 01223578899999999998766544
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.64 E-value=7.7e-08 Score=84.38 Aligned_cols=122 Identities=16% Similarity=0.229 Sum_probs=82.8
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC----------------CceeeecCCC-CCCCCCCeeEEEec--cc
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP----------------PLVIKGDFHA-QPFDNGTFDFEFSN--VF 176 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~----------------~~~~~aDa~~-LPf~d~SFD~V~s~--~l 176 (258)
..++||+|||+|..+..+++.+...|+|+|+++.. ..+..+|..+ ++...++||+|+|| .+
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI 190 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV 190 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence 45899999999999888877666689999997521 1234455443 33344799999997 21
Q ss_pred c---cc-----CChHH----------HHHH-HHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeee
Q 025071 177 D---HA-----LYPWK----------FVGE-IERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRK 237 (258)
Q Consensus 177 ~---h~-----~~p~~----------~l~E-i~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~ 237 (258)
. .. .+|.. ++++ +.+.|+|||++++.+... -.+.+.++|.+.|+.
T Consensus 191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~------------Q~~~v~~l~~~~g~~---- 254 (271)
T d1nv8a_ 191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED------------QVEELKKIVSDTVFL---- 254 (271)
T ss_dssp CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT------------CHHHHTTTSTTCEEE----
T ss_pred CcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHH------------HHHHHHHHHHhCCEE----
Confidence 1 11 13433 2333 567899999998865411 146677888888874
Q ss_pred ecCCCCeEEEEEEeCC
Q 025071 238 VDGFGLDTEVVFRKKK 253 (258)
Q Consensus 238 v~g~~l~~~~~f~K~~ 253 (258)
-|-.|.++.++++|+.
T Consensus 255 kDl~g~~R~~~~~k~~ 270 (271)
T d1nv8a_ 255 KDSAGKYRFLLLNRRS 270 (271)
T ss_dssp ECTTSSEEEEEEECCC
T ss_pred eccCCCcEEEEEEEcC
Confidence 3667888999998864
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.62 E-value=3.2e-08 Score=82.10 Aligned_cols=40 Identities=25% Similarity=0.188 Sum_probs=32.7
Q ss_pred CCCCCeeEEEe-ccccccCCh--HHHHHHHHhcccCCcEEEEE
Q 025071 163 FDNGTFDFEFS-NVFDHALYP--WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 163 f~d~SFD~V~s-~~l~h~~~p--~~~l~Ei~RVLKPGG~lii~ 202 (258)
...+.||+|+| |+|.++..+ .++++.+++.|+|||++++-
T Consensus 128 ~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 128 NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34578999999 677776654 47899999999999998884
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.59 E-value=2.9e-08 Score=82.85 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=66.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC--------------CCceeeecCCCCC-----CCCCCeeEE
Q 025071 112 FLFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR--------------PPLVIKGDFHAQP-----FDNGTFDFE 171 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~--------------~~~~~~aDa~~LP-----f~d~SFD~V 171 (258)
...+++.+||++||+|..+.++.+ .+...|+|+|.++. ...++.+++.+++ +..++||.|
T Consensus 20 ~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgI 99 (192)
T d1m6ya2 20 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGI 99 (192)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCccee
Confidence 567889999999999999888765 34458999998642 2245677666543 457899999
Q ss_pred Eec-cc---------cccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 172 FSN-VF---------DHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 172 ~s~-~l---------~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+.. .+ ..+......+.++.++|+|||.+++..
T Consensus 100 l~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 100 LMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp EEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred eeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 873 11 122234567899999999999988754
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.58 E-value=3.8e-08 Score=83.16 Aligned_cols=96 Identities=16% Similarity=0.245 Sum_probs=65.1
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCCC---
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHAQ--- 161 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~L--- 161 (258)
++..++... ++.+|||+|||+|..+.++++. + ..+++++|.++. ...++.||+.+.
T Consensus 47 lL~~lv~~~---kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~ 123 (214)
T d2cl5a1 47 IMDAVIREY---SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQ 123 (214)
T ss_dssp HHHHHHHHH---CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGG
T ss_pred HHHHHHHhh---CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccc
Confidence 444444322 5679999999999999999863 2 247999998642 123567776532
Q ss_pred ---CCCCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEE
Q 025071 162 ---PFDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 162 ---Pf~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii 201 (258)
.+..++||+|+..+-+....+...+.|..|.|||||++++
T Consensus 124 l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 124 LKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp HHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred hhhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence 2456789999985322222233456788999999998765
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.57 E-value=2.4e-08 Score=89.33 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=66.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC-----------------CceeeecCCC----CCCCCCCeeEE
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP-----------------PLVIKGDFHA----QPFDNGTFDFE 171 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~-----------------~~~~~aDa~~----LPf~d~SFD~V 171 (258)
+.++.+|||++||+|..+.+++..|...|+++|+++.. ..++++|+.. +.-..+.||+|
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 45789999999999999988877787789999987531 2356777632 22346789999
Q ss_pred Eec--ccc----ccC----ChHHHHHHHHhcccCCcEEEEEe
Q 025071 172 FSN--VFD----HAL----YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 172 ~s~--~l~----h~~----~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+++ .+. ... +-.+.++.+.++|+|||.+++..
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s 263 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 263 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 985 331 111 22346788899999999998864
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.57 E-value=3.7e-08 Score=80.27 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=58.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------CceeeecCC----CCCCCCCCeeEEEec
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------PLVIKGDFH----AQPFDNGTFDFEFSN 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------~~~~~aDa~----~LPf~d~SFD~V~s~ 174 (258)
+..+++|||+|||+|..+.+.+..|. +|+++|.++.. ..+...++. .....+++||+|+++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 45788999999999999988777885 79999987521 123333332 223456789999986
Q ss_pred cccccCChHHHHHHH--HhcccCCcEEEEEec
Q 025071 175 VFDHALYPWKFVGEI--ERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei--~RVLKPGG~lii~v~ 204 (258)
==-+... ...+.++ ...|+|||++++..+
T Consensus 118 PPY~~~~-~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 118 PPYAMDL-AALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CCTTSCT-THHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cccccCH-HHHHHHHHHcCCcCCCeEEEEEec
Confidence 1001111 2233333 358999999888643
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1.1e-06 Score=75.72 Aligned_cols=113 Identities=13% Similarity=0.034 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCC----------------CceeeecCCCC------CCCCCCeeEE
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRP----------------PLVIKGDFHAQ------PFDNGTFDFE 171 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~----------------~~~~~aDa~~L------Pf~d~SFD~V 171 (258)
+..++||+|||+|..+..|+.. ...+++|+|+++.. ..+...+.... ...+++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 3468999999999999888753 23489999997521 11233322221 2346789999
Q ss_pred Eec--ccccc-------------CC---------------------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCC
Q 025071 172 FSN--VFDHA-------------LY---------------------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSAN 215 (258)
Q Consensus 172 ~s~--~l~h~-------------~~---------------------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~ 215 (258)
+|| .+... .. -.+.++|..+.++..|++...+.-
T Consensus 141 vsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~---------- 210 (250)
T d2h00a1 141 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGK---------- 210 (250)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESS----------
T ss_pred EecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecc----------
Confidence 998 32110 00 123456778889999988766531
Q ss_pred CCCChhHHHHHhhcCceEEeeee
Q 025071 216 DLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 216 ~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
.-+.+++.+++++.|+.++..+
T Consensus 211 -~~~l~~i~~~L~~~g~~~i~~i 232 (250)
T d2h00a1 211 -KCSLAPLKEELRIQGVPKVTYT 232 (250)
T ss_dssp -TTSHHHHHHHHHHTTCSEEEEE
T ss_pred -hhhHHHHHHHHHHcCCCeEEEE
Confidence 1246889999999998776655
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=6.3e-07 Score=73.45 Aligned_cols=89 Identities=10% Similarity=0.008 Sum_probs=62.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCC-CCCCCCCeeEEEec-ccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHA-QPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~-LPf~d~SFD~V~s~-~l~ 177 (258)
.+.+|||++||+|..+.+....|...|+.||.++. ...++.+|+.+ +.-.++.||+|+++ =..
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 56799999999999998877888889999998642 12355666543 33467899999995 111
Q ss_pred ccCChHHHHHHHH--hcccCCcEEEEEec
Q 025071 178 HALYPWKFVGEIE--RTLKPAGVCVLHVA 204 (258)
Q Consensus 178 h~~~p~~~l~Ei~--RVLKPGG~lii~v~ 204 (258)
...-...+.-+. ..|+|+|.+++..+
T Consensus 123 -~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 123 -RGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp -TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred -cchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 112334444444 47999999998654
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.34 E-value=4.1e-07 Score=74.72 Aligned_cols=91 Identities=18% Similarity=0.028 Sum_probs=63.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCC----CCCCCCCeeEEEe
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHA----QPFDNGTFDFEFS 173 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~----LPf~d~SFD~V~s 173 (258)
..+.+|||++||+|.++.+....|...|++||.++. ...+.++|+.+ +.-+...||+|++
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 468899999999999999888889888999998642 12356777643 1224568999998
Q ss_pred ccccccCChHHHHHHHH--hcccCCcEEEEEec
Q 025071 174 NVFDHALYPWKFVGEIE--RTLKPAGVCVLHVA 204 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~--RVLKPGG~lii~v~ 204 (258)
.==-+...-...+..+. ..|+|||.+++..+
T Consensus 120 DPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 120 DPPYAKQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp CCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred chhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 51001122345566664 47999999988654
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.25 E-value=1.8e-06 Score=76.79 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=62.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------------CCceeeecCCCC----CCCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------------PPLVIKGDFHAQ----PFDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------------~~~~~~aDa~~L----Pf~d~SFD~V~ 172 (258)
..+.+|||++||||..+.+++..|. +|++||.++. ...++++|+.+. -...+.||+|+
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii 209 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 209 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence 4678999999999999998888775 8999998641 124677776432 22457899999
Q ss_pred ec--ccccc--------C-ChHHHHHHHHhcccCCcEEEEEec
Q 025071 173 SN--VFDHA--------L-YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 173 s~--~l~h~--------~-~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++ .+-.- . +-...++.+.++|+|||.+++...
T Consensus 210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 85 33111 1 123345678889999998766543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=5.2e-06 Score=68.04 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=63.1
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCCC----ceeeecCCCCC--------CCCCCeeEEEec-c
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRPP----LVIKGDFHAQP--------FDNGTFDFEFSN-V 175 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~~----~~~~aDa~~LP--------f~d~SFD~V~s~-~ 175 (258)
..++++.+|||+||++|.++.++.+. + ...++|+|+.+..+ .+.++|..... ...+.||+|+|. +
T Consensus 18 ~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~a 97 (180)
T d1ej0a_ 18 KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMA 97 (180)
T ss_dssp CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCceEeecccccchhhhhhhhhccCcceeEEEeccc
Confidence 45678899999999999999987753 3 35799999876422 35666665322 245689999995 2
Q ss_pred c--------cccCCh---HHHHHHHHhcccCCcEEEEEe
Q 025071 176 F--------DHALYP---WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 l--------~h~~~p---~~~l~Ei~RVLKPGG~lii~v 203 (258)
. +|...- ..++.=+.++|||||.+++=+
T Consensus 98 p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 98 PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 2 111111 123455678999999998844
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=1.9e-06 Score=72.85 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=62.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCC-CC-----CCCCCee
Q 025071 114 FNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHA-QP-----FDNGTFD 169 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~-LP-----f~d~SFD 169 (258)
.++.+||+||||+|..+.++++. . ..+++.+|.++. ...+..+|+.+ ++ ..+++||
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 35789999999999999999863 2 247999998652 12356676533 22 2467999
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+..+- + ..-...+.++.+.|+|||.+++-
T Consensus 138 ~ifiD~d-k-~~y~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 138 VAVVDAD-K-ENCSAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp EEEECSC-S-TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEeCC-H-HHHHHHHHHHHHHhcCCcEEEEe
Confidence 9998531 1 12345678999999999999885
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.21 E-value=1e-05 Score=70.93 Aligned_cols=133 Identities=13% Similarity=0.109 Sum_probs=79.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHh----cC--CCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEE
Q 025071 113 LFNESKALSIGARVGQEVAALKL----VG--VSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEF 172 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~----~g--~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~ 172 (258)
..++.+|||.|||+|.++.++.+ .+ ...++|+|+++. ......+|.... ...+.||+|+
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~vi 193 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVI 193 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc-cccccccccc
Confidence 34567899999999998876642 22 135899998642 122445554432 3457899999
Q ss_pred ec-cccccCC------------------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhh-cCce
Q 025071 173 SN-VFDHALY------------------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFR-ESEL 232 (258)
Q Consensus 173 s~-~l~h~~~------------------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~-~~~~ 232 (258)
++ =+..... ...++..+.+.|||||++++.+|..- ... -+...+.+.+. .+.+
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~----l~~---~~~~~lR~~L~~~~~i 266 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAM----FGT---SDFAKVDKFIKKNGHI 266 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGG----GGS---TTHHHHHHHHHHHEEE
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCcc----ccC---chhHHHHHHHHhCCcE
Confidence 97 1110000 12357889999999999999887431 010 12455655544 4444
Q ss_pred EEeeee-----cCCCCeE-EEEEEeCC
Q 025071 233 VAVRKV-----DGFGLDT-EVVFRKKK 253 (258)
Q Consensus 233 ~~v~~v-----~g~~l~~-~~~f~K~~ 253 (258)
..+... .+.+..| .++++|+.
T Consensus 267 ~~ii~lp~~~F~~~~~~t~ilvl~K~~ 293 (328)
T d2f8la1 267 EGIIKLPETLFKSEQARKSILILEKAD 293 (328)
T ss_dssp EEEEECCGGGSCC-CCCEEEEEEEECC
T ss_pred EEEEECCccccCCCCCCeEEEEEECCC
Confidence 444433 2333334 67888854
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.21 E-value=7.1e-07 Score=78.01 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=65.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------------------CCceeeecCCCCCCCCCCe
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------------------PPLVIKGDFHAQPFDNGTF 168 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------------------~~~~~~aDa~~LPf~d~SF 168 (258)
.++.+||.||+|.|..+..+.+.+..+|+.||+.+. ...++.+|+...=-.+++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 567899999999999998887766668999998531 1135566654322246789
Q ss_pred eEEEeccccccC-----ChHHHHHHHHhcccCCcEEEEEec
Q 025071 169 DFEFSNVFDHAL-----YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 169 D~V~s~~l~h~~-----~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|+|++...+... .-..+++.+.|.|+|||++++...
T Consensus 151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~ 191 (276)
T d1mjfa_ 151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 191 (276)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence 999986443322 225789999999999999988753
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.17 E-value=8.5e-07 Score=76.38 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=56.1
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC-------------CceeeecCCCCCCCCCCeeE
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP-------------PLVIKGDFHAQPFDNGTFDF 170 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~-------------~~~~~aDa~~LPf~d~SFD~ 170 (258)
.+.+++...+.++.+|||||||+|.++..|.+.+ .+|++||+++.. ..++.+|+.++++++..++.
T Consensus 18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~ 96 (245)
T d1yuba_ 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYK 96 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEE
T ss_pred HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceeee
Confidence 3444555566788899999999999999999887 489999986431 23678999999999988888
Q ss_pred EEec
Q 025071 171 EFSN 174 (258)
Q Consensus 171 V~s~ 174 (258)
|+++
T Consensus 97 vv~N 100 (245)
T d1yuba_ 97 IVGN 100 (245)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 8886
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=2.2e-05 Score=65.79 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=64.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEeccccc
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h 178 (258)
++.+|+|+|||.|.-+.-|+-. +..+++.+|.+.. ...++.+.++++. .+.+||+|+|.++.
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~~- 142 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFA- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSS-
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhhc-
Confidence 4679999999999988877753 3358999996531 2245677788765 45689999997653
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEe
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
.....++-+...+++||.+++.-
T Consensus 143 --~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 143 --SLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCcEEEEEC
Confidence 45677788888999999988864
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.02 E-value=5.1e-06 Score=70.85 Aligned_cols=71 Identities=15% Similarity=0.094 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCee
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFD 169 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD 169 (258)
+.+.+++...+.++.+|||||||+|.++..|.+.+ .+|+++|+++. ...++.+|+.+++++.....
T Consensus 9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~ 87 (235)
T d1qama_ 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY 87 (235)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC
T ss_pred HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccc
Confidence 44555655567789999999999999999999876 48999998531 12578899999888766555
Q ss_pred EEEec
Q 025071 170 FEFSN 174 (258)
Q Consensus 170 ~V~s~ 174 (258)
.|++|
T Consensus 88 ~vv~N 92 (235)
T d1qama_ 88 KIFGN 92 (235)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 66665
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.00 E-value=2.1e-05 Score=67.83 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=63.1
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeC----CCCCCc-------e----eeecCCCCCCCCCC
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLVG-VSDSIGIDL----VPRPPL-------V----IKGDFHAQPFDNGT 167 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~----s~~~~~-------~----~~aDa~~LPf~d~S 167 (258)
+.++.+...+.+.++|+|+|||.|..+.++++.. ...|.|+|+ ...|.. + ...|...+ +++.
T Consensus 55 l~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l--~~~~ 132 (257)
T d2p41a1 55 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFI--PPER 132 (257)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTS--CCCC
T ss_pred HHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhc--CCCc
Confidence 3455566678888999999999999999988653 234666665 222211 1 12233333 4678
Q ss_pred eeEEEeccccccCChH-------HHHHHHHhcccCCcEEEEEec
Q 025071 168 FDFEFSNVFDHALYPW-------KFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 168 FD~V~s~~l~h~~~p~-------~~l~Ei~RVLKPGG~lii~v~ 204 (258)
.|+|+|..-++..++. +++.=+.+.|+|||.+++=+-
T Consensus 133 ~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl 176 (257)
T d2p41a1 133 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 176 (257)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEEC
Confidence 9999996333333332 344555688999998877554
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.00 E-value=2.9e-06 Score=75.38 Aligned_cols=91 Identities=18% Similarity=0.288 Sum_probs=65.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------------------CCceeeecCCCC-CCCCCCeeEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR--------------------PPLVIKGDFHAQ-PFDNGTFDFE 171 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~--------------------~~~~~~aDa~~L-Pf~d~SFD~V 171 (258)
+++.+||.||.|.|..+.++.+. +..+|+.||+++. ...++.+|+.+. .-.++.||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 46789999999999999888765 4568999998641 123566665431 2245789999
Q ss_pred Eecccccc--------CChHHHHHHHHhcccCCcEEEEEec
Q 025071 172 FSNVFDHA--------LYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 172 ~s~~l~h~--------~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++...+.. ..-..+++.+.|.|+|||++++.+.
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 98532211 1235688999999999999998764
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.94 E-value=0.0001 Score=62.93 Aligned_cols=129 Identities=13% Similarity=0.037 Sum_probs=81.7
Q ss_pred CCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC---------------CCceeeecCCCCCCC---CCCeeEEEecc
Q 025071 115 NESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFD---NGTFDFEFSNV 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~---d~SFD~V~s~~ 175 (258)
.+.+++|||+|.|.-+.-|+- .+..+++-+|.+.. ...++.+.++.+... .++||+|+|.+
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 567999999999998887774 44457999996531 123455566655432 36899999975
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc--eEEeeeec--CCCCe-EEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE--LVAVRKVD--GFGLD-TEVVFR 250 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~--~~~v~~v~--g~~l~-~~~~f~ 250 (258)
+. .....+.-....+++||.+++.=.. .+. -..++....+...+ +..+..+. ..+-. +.++++
T Consensus 150 va---~l~~ll~~~~~~l~~~g~~i~~KG~-----~~~----~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r~lv~i~ 217 (239)
T d1xdza_ 150 VA---RLSVLSELCLPLVKKNGLFVALKAA-----SAE----EELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIR 217 (239)
T ss_dssp CS---CHHHHHHHHGGGEEEEEEEEEEECC------CH----HHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEE
T ss_pred hh---CHHHHHHHHhhhcccCCEEEEECCC-----ChH----HHHHHHHHHHHHcCCEEEEEEEEeCCCCCCCEEEEEEE
Confidence 53 4567778889999999998886431 110 01233344455554 34454443 22222 588888
Q ss_pred eCCcC
Q 025071 251 KKKKK 255 (258)
Q Consensus 251 K~~~~ 255 (258)
|..++
T Consensus 218 K~~~~ 222 (239)
T d1xdza_ 218 KIKNT 222 (239)
T ss_dssp ECSCC
T ss_pred ECCCC
Confidence 86554
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.86 E-value=1.8e-05 Score=67.08 Aligned_cols=96 Identities=19% Similarity=0.253 Sum_probs=65.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC----------------CceeeecCCC-CC
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP----------------PLVIKGDFHA-QP 162 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~----------------~~~~~aDa~~-LP 162 (258)
+++..|+.. .++.+||+|||++|..+.++++. + ...++.+|.++.. ..++.+++.+ ||
T Consensus 49 ~~L~~L~~~---~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~ 125 (227)
T d1susa1 49 QFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLD 125 (227)
T ss_dssp HHHHHHHHH---HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHHHh---cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHH
Confidence 344444432 25689999999999999988852 2 2479999987521 2345566531 12
Q ss_pred ------CCCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 163 ------FDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 163 ------f~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..+++||+|+..+ +| .+-..+++.+.+.|+|||.+++-
T Consensus 126 ~l~~~~~~~~~fD~iFiDa-~k-~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 126 EMIKDEKNHGSYDFIFVDA-DK-DNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp HHHHCGGGTTCBSEEEECS-CS-TTHHHHHHHHHHHBCTTCCEEEE
T ss_pred HHHhccccCCceeEEEecc-ch-hhhHHHHHHHHhhcCCCcEEEEc
Confidence 2367899999853 22 22346678899999999999885
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.79 E-value=0.00012 Score=62.02 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=57.2
Q ss_pred CCCEEEEECCCCCHHHHHHHh----cC-CCcEEEEeCCCCC----------CceeeecCCCCC----CCCCCeeEEEecc
Q 025071 115 NESKALSIGARVGQEVAALKL----VG-VSDSIGIDLVPRP----------PLVIKGDFHAQP----FDNGTFDFEFSNV 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~----~g-~~~v~GvD~s~~~----------~~~~~aDa~~LP----f~d~SFD~V~s~~ 175 (258)
++.+||+||++.|..+..+++ .+ ..+++|+|+.... ..+.++|..+.. +.+..+|+|+..+
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 467899999999987655542 33 3579999985422 236777765443 2456789888743
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
- |.......--+....|+|||++++.
T Consensus 160 ~-H~~~~v~~~~~~~~lLk~GG~iIve 185 (232)
T d2bm8a1 160 A-HANTFNIMKWAVDHLLEEGDYFIIE 185 (232)
T ss_dssp S-CSSHHHHHHHHHHHTCCTTCEEEEC
T ss_pred C-cchHHHHHHHHHhcccCcCCEEEEE
Confidence 3 3332222212567899999999985
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.74 E-value=2.2e-05 Score=68.79 Aligned_cols=91 Identities=20% Similarity=0.221 Sum_probs=65.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------------CCceeeecCCC-C-CCCCCCeeEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------------PPLVIKGDFHA-Q-PFDNGTFDFE 171 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------------~~~~~~aDa~~-L-Pf~d~SFD~V 171 (258)
++..+||-||-|.|..+.++.+. +...++.+|+.+. ...++.+|+.. + -..+++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 56789999999999999998875 4567999998631 12355666432 1 1245799999
Q ss_pred EeccccccC-----ChHHHHHHHHhcccCCcEEEEEec
Q 025071 172 FSNVFDHAL-----YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 172 ~s~~l~h~~-----~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+....+... .-..+++.+.|.|+|||++++...
T Consensus 159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 986433211 235688999999999999999764
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.73 E-value=6.3e-05 Score=61.04 Aligned_cols=87 Identities=20% Similarity=0.171 Sum_probs=59.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------C--Cceeeec---CCCCCCCCCCeeEEEec
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------P--PLVIKGD---FHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~--~~~~~aD---a~~LPf~d~SFD~V~s~ 174 (258)
.+.+|||+-||||.++.+....|...|+.||.+.. . ..+...| ..........||+|++.
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 56799999999999998888889889999997531 1 1123333 22334456679999995
Q ss_pred ---cccccCChHHHHHHHH--hcccCCcEEEEEec
Q 025071 175 ---VFDHALYPWKFVGEIE--RTLKPAGVCVLHVA 204 (258)
Q Consensus 175 ---~l~h~~~p~~~l~Ei~--RVLKPGG~lii~v~ 204 (258)
... .-...+.-+. ..|++||.+++..+
T Consensus 123 PPY~~~---~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 123 PPFHFN---LAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCSSSC---HHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhHhhh---hHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 111 1234444443 47999999999754
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.70 E-value=2.9e-05 Score=67.45 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=65.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------------CCceeeecCCC-CCCCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------------PPLVIKGDFHA-QPFDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------------~~~~~~aDa~~-LPf~d~SFD~V~ 172 (258)
.++.+||-||-|.|..+.++.+. +..+|+.+|+.+. ...++.+|+.+ +--.+++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 46789999999999999998775 5668999998531 12356666532 122467899999
Q ss_pred ecccccc-----CChHHHHHHHHhcccCCcEEEEEec
Q 025071 173 SNVFDHA-----LYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 173 s~~l~h~-----~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
....+.. ..-..+++.+.|.|+|||+++....
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 8633221 1245788999999999999998754
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.66 E-value=2.9e-05 Score=68.30 Aligned_cols=91 Identities=19% Similarity=0.140 Sum_probs=64.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------------CCceeeecCCC-CCCCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------------PPLVIKGDFHA-QPFDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------------~~~~~~aDa~~-LPf~d~SFD~V~ 172 (258)
+++.+||-||.|.|..+.++.+. +..+|+.||+.+. ...++.+|+.+ +--.++.||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 46789999999999999888775 4567999998641 12355566432 112357899999
Q ss_pred ecccccc------CChHHHHHHHHhcccCCcEEEEEec
Q 025071 173 SNVFDHA------LYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 173 s~~l~h~------~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+...+.. ..-..+++.+.|.|+|||++++...
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 8643321 1235788999999999999998754
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.00053 Score=60.27 Aligned_cols=136 Identities=14% Similarity=0.217 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCC----C
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHA----Q 161 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~----L 161 (258)
..+++.+.+.....++.+|||+-||+|.++..|++.+ .+|+|+|.++. ...++.+++++ .
T Consensus 198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~ 276 (358)
T d1uwva2 198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ 276 (358)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS
T ss_pred hHHHHHHHHhhccCCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhh
Confidence 3455555444445677899999999999999998765 58999998642 12356666543 3
Q ss_pred CCCCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhc-CceEEeeeecC
Q 025071 162 PFDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRE-SELVAVRKVDG 240 (258)
Q Consensus 162 Pf~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~-~~~~~v~~v~g 240 (258)
+...++||+|+.+==.... .+.++++.+. +|.-++++... +. . -.+++..|.++ ..+.++..+|-
T Consensus 277 ~~~~~~~d~vilDPPR~G~--~~~~~~l~~~-~~~~ivYVSCn--p~-------T--laRDl~~l~~~gy~l~~i~~~D~ 342 (358)
T d1uwva2 277 PWAKNGFDKVLLDPARAGA--AGVMQQIIKL-EPIRIVYVSCN--PA-------T--LARDSEALLKAGYTIARLAMLDM 342 (358)
T ss_dssp GGGTTCCSEEEECCCTTCC--HHHHHHHHHH-CCSEEEEEESC--HH-------H--HHHHHHHHHHTTCEEEEEEEECC
T ss_pred hhhhccCceEEeCCCCccH--HHHHHHHHHc-CCCEEEEEeCC--HH-------H--HHHHHHHHHHCCCeEeEEEEEec
Confidence 4456789999985000000 2356677664 67665655422 11 0 13556666553 35677777764
Q ss_pred CC----CeEEEEEEe
Q 025071 241 FG----LDTEVVFRK 251 (258)
Q Consensus 241 ~~----l~~~~~f~K 251 (258)
|. +.+.+.|+|
T Consensus 343 FP~T~HvE~v~~l~R 357 (358)
T d1uwva2 343 FPHTGHLESMVLFSR 357 (358)
T ss_dssp STTSSCCEEEEEEEC
T ss_pred CCCCccEEEEEEEEe
Confidence 43 335666654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.59 E-value=0.00026 Score=64.26 Aligned_cols=133 Identities=14% Similarity=0.099 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc----CC----------CcEEEEeCCCC-----------------CCceeeecCCCCC
Q 025071 114 FNESKALSIGARVGQEVAALKLV----GV----------SDSIGIDLVPR-----------------PPLVIKGDFHAQP 162 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~----g~----------~~v~GvD~s~~-----------------~~~~~~aDa~~LP 162 (258)
.++.+|+|-+||+|.+.....+. +. ..+.|+|+++. ......+|....
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~- 239 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK- 239 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS-
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh-
Confidence 45679999999999987655331 11 24889997531 112445555432
Q ss_pred CCCCCeeEEEec---cccccC--------------C-hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHH
Q 025071 163 FDNGTFDFEFSN---VFDHAL--------------Y-PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLV 224 (258)
Q Consensus 163 f~d~SFD~V~s~---~l~h~~--------------~-p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~ 224 (258)
.+.+.||+|++| ...... + -..++..+.+.|||||++++.+|..- -+... +...+.
T Consensus 240 ~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~---L~~~~---~~~~iR 313 (425)
T d2okca1 240 EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNV---LFEAG---AGETIR 313 (425)
T ss_dssp CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHH---HHCST---HHHHHH
T ss_pred hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHH---hhhhh---hHHHHH
Confidence 356789999997 221110 1 12478999999999999999887421 00100 124565
Q ss_pred HHhh-cCceEEeeee-----cCCCCeE-EEEEEeCC
Q 025071 225 KLFR-ESELVAVRKV-----DGFGLDT-EVVFRKKK 253 (258)
Q Consensus 225 ~lf~-~~~~~~v~~v-----~g~~l~~-~~~f~K~~ 253 (258)
+.+- +..+..+... .+.+.+| .++|+|..
T Consensus 314 ~~Ll~~~~i~aIi~LP~~~F~~t~v~t~Ilil~K~k 349 (425)
T d2okca1 314 KRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQ 349 (425)
T ss_dssp HHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEESS
T ss_pred HHHHHhcchhHhhcCCcccccCCCCCeEEEEEECCC
Confidence 5554 3444444433 2334444 77888743
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=3.7e-05 Score=67.21 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=64.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------------CCceeeecCCC-CCCCCCCeeEE
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------------PPLVIKGDFHA-QPFDNGTFDFE 171 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------------~~~~~~aDa~~-LPf~d~SFD~V 171 (258)
...+.+||-||-|.|..+..+.+. +..+|+.+|+.+. +..++.+|+.+ +--.+++||+|
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 356789999999999999998875 4678999998631 12356666432 11135789999
Q ss_pred EeccccccC-----ChHHHHHHHHhcccCCcEEEEEec
Q 025071 172 FSNVFDHAL-----YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 172 ~s~~l~h~~-----~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++...+... .-..+++.+.|.|+|||++++...
T Consensus 156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 156 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 193 (285)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence 996332211 223578999999999999998754
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.55 E-value=7e-05 Score=61.27 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=62.3
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC-----------CceeeecCCCCC-----CCCCCeeEEEec-
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP-----------PLVIKGDFHAQP-----FDNGTFDFEFSN- 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~-----------~~~~~aDa~~LP-----f~d~SFD~V~s~- 174 (258)
...+++.++|..||.|..+.++.+.+ .+|+|+|..+.. ..++++++..+. +..+.+|.|+..
T Consensus 15 ~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DL 93 (182)
T d1wg8a2 15 AVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADL 93 (182)
T ss_dssp TCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEEc
Confidence 46788999999999999988877654 489999975421 123444433222 345789999984
Q ss_pred --cccccCCh-------HHHHHHHHhcccCCcEEEEEe
Q 025071 175 --VFDHALYP-------WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 --~l~h~~~p-------~~~l~Ei~RVLKPGG~lii~v 203 (258)
+-.|..+| ...+.....+|+|||.+++..
T Consensus 94 GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~ 131 (182)
T d1wg8a2 94 GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA 131 (182)
T ss_dssp SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence 22222222 346778889999999988764
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.43 E-value=5.8e-05 Score=66.88 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=61.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------------CCceeeecCCC-CCCCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------------PPLVIKGDFHA-QPFDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------------~~~~~~aDa~~-LPf~d~SFD~V~ 172 (258)
.++.+||-||-|.|..+.++.+. +..+|+.+|+.+. ...++.+|+.+ +--.+++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 46789999999999999998875 3568999998531 11244455431 111367899999
Q ss_pred ecccccc-----CChHHHHHHHHhcccCCcEEEEEec
Q 025071 173 SNVFDHA-----LYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 173 s~~l~h~-----~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+...+.. ..-..+++.+.|.|+|||+++....
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 9633221 1234678999999999999999753
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.31 E-value=0.00052 Score=60.23 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=63.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCCC---------------CceeeecCCCCCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPRP---------------PLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
...++.+|||++||+|.-+..+++. +-..++++|.++.. ......|+..++..++.||.|+..
T Consensus 113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvD 192 (313)
T d1ixka_ 113 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD 192 (313)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEc
Confidence 3568899999999999988777653 22469999986421 123456777777778899999973
Q ss_pred -------cccccC------Ch----------HHHHHHHHhcccCCcEEEEE
Q 025071 175 -------VFDHAL------YP----------WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 -------~l~h~~------~p----------~~~l~Ei~RVLKPGG~lii~ 202 (258)
++...+ .+ .+.+....+.|||||.++..
T Consensus 193 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYs 243 (313)
T d1ixka_ 193 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 243 (313)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEe
Confidence 222211 12 23568889999999987765
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.0014 Score=56.54 Aligned_cols=92 Identities=18% Similarity=0.142 Sum_probs=61.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCC-CcEEEEeCCCCCC--------------ceeeecCCCC--CCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGV-SDSIGIDLVPRPP--------------LVIKGDFHAQ--PFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~~~--------------~~~~aDa~~L--Pf~d~SFD~V~s~ 174 (258)
...++.+|||+++|.|.-+..+++.+. ..++++|.++... ..+..+.... +...+.||.|+..
T Consensus 99 ~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~D 178 (284)
T d1sqga2 99 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD 178 (284)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred CccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEe
Confidence 356789999999999999888877542 4699999876431 1222222211 1245789999973
Q ss_pred -------cccccCC------h----------HHHHHHHHhcccCCcEEEEEe
Q 025071 175 -------VFDHALY------P----------WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 -------~l~h~~~------p----------~~~l~Ei~RVLKPGG~lii~v 203 (258)
++..-++ + .+.+..+.+.|||||+++..+
T Consensus 179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT 230 (284)
T d1sqga2 179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 230 (284)
T ss_dssp CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 2322221 1 245688889999999887753
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.00093 Score=57.87 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCC
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNG 166 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~ 166 (258)
+.+.+++...+.++..||+||+|+|.++..|.+.+ .+|+++++.+. ...++.+|+...+++.
T Consensus 9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~- 86 (278)
T d1zq9a1 9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF- 86 (278)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC-
T ss_pred HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh-
Confidence 34445555556778899999999999999999887 48999998531 1236788887776653
Q ss_pred CeeEEEec
Q 025071 167 TFDFEFSN 174 (258)
Q Consensus 167 SFD~V~s~ 174 (258)
++.|++|
T Consensus 87 -~~~vV~N 93 (278)
T d1zq9a1 87 -FDTCVAN 93 (278)
T ss_dssp -CSEEEEE
T ss_pred -hhhhhcc
Confidence 5677776
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.0013 Score=61.21 Aligned_cols=134 Identities=15% Similarity=0.110 Sum_probs=74.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHh----cCC---------------CcEEEEeCCCCC--------------C------ce
Q 025071 113 LFNESKALSIGARVGQEVAALKL----VGV---------------SDSIGIDLVPRP--------------P------LV 153 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~----~g~---------------~~v~GvD~s~~~--------------~------~~ 153 (258)
..++.+|+|-+||+|.+.....+ ... ..++|+|+.+.. . ..
T Consensus 162 ~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~ 241 (524)
T d2ar0a1 162 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 241 (524)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchh
Confidence 34577999999999998754432 111 147899976421 0 11
Q ss_pred eeecCCCCC-CCCCCeeEEEec---cccccC-----------Ch-HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCC
Q 025071 154 IKGDFHAQP-FDNGTFDFEFSN---VFDHAL-----------YP-WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDL 217 (258)
Q Consensus 154 ~~aDa~~LP-f~d~SFD~V~s~---~l~h~~-----------~p-~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~ 217 (258)
..++...-+ +....||+|++| ...... +. ..++..+.+.|||||++++.+|..- -+...
T Consensus 242 ~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~---Lf~~~-- 316 (524)
T d2ar0a1 242 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNV---LFEGG-- 316 (524)
T ss_dssp EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHH---HHCCT--
T ss_pred hhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHH---hhhhh--
Confidence 112211111 234679999997 211111 11 2478999999999999999887421 00100
Q ss_pred CChhHHHHHh-hcCceEEeeee-----cCCCCeE-EEEEEeC
Q 025071 218 FSVKPLVKLF-RESELVAVRKV-----DGFGLDT-EVVFRKK 252 (258)
Q Consensus 218 ~s~~~l~~lf-~~~~~~~v~~v-----~g~~l~~-~~~f~K~ 252 (258)
+...+.+.+ +++.+..+-.. .+.+.+| .++|+|+
T Consensus 317 -~~~~iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Il~l~K~ 357 (524)
T d2ar0a1 317 -KGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 357 (524)
T ss_dssp -HHHHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEB
T ss_pred -hhHHHHHHHHHcCCceEEEECCCCcCCCCCCCeEEEEEECC
Confidence 123455554 44444444443 2334444 7777874
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.001 Score=56.67 Aligned_cols=60 Identities=10% Similarity=0.008 Sum_probs=44.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCC
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFD 164 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~ 164 (258)
.+.+++...+.++..||+||||+|.++..|.+.+ .+|+++|+.+. ...++.+|+..+++.
T Consensus 10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~ 82 (252)
T d1qyra_ 10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG 82 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhccc
Confidence 3444444456678899999999999999999876 48999998631 124677888776654
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.011 Score=50.96 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=44.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCCC---------------CceeeecCCCCCCCC---CCeeEEE
Q 025071 113 LFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPRP---------------PLVIKGDFHAQPFDN---GTFDFEF 172 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~d---~SFD~V~ 172 (258)
..++.+|||++||+|.-+..+++. +...++++|+++.. ..+...|+..++-.+ +.||.|+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 467889999999999988777753 33479999986421 124556766665443 5799999
Q ss_pred ec
Q 025071 173 SN 174 (258)
Q Consensus 173 s~ 174 (258)
..
T Consensus 172 ~D 173 (293)
T d2b9ea1 172 LD 173 (293)
T ss_dssp EC
T ss_pred ec
Confidence 74
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.13 E-value=0.0064 Score=47.99 Aligned_cols=92 Identities=14% Similarity=0.059 Sum_probs=55.9
Q ss_pred HHHHhcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCCC-----------CC
Q 025071 106 DLKQRHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQPF-----------DN 165 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf-----------~d 165 (258)
.+.+...+++|.+||-+|||. |..+..+++ .|..+|+++|.++.... -...+..+..+ ..
T Consensus 19 al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~ 98 (182)
T d1vj0a2 19 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHG 98 (182)
T ss_dssp HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCC
Confidence 333444567899999999983 555555554 67668999998643210 01111111111 23
Q ss_pred CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 166 GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+.+|+|+..+- . ...+++..+.|+|||++++.
T Consensus 99 ~g~Dvvid~vG----~-~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 99 RGADFILEATG----D-SRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp SCEEEEEECSS----C-TTHHHHHHHHEEEEEEEEEC
T ss_pred CCceEEeecCC----c-hhHHHHHHHHhcCCCEEEEE
Confidence 45999987421 1 23457889999999998765
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.91 E-value=0.013 Score=47.22 Aligned_cols=92 Identities=20% Similarity=0.115 Sum_probs=58.4
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCCC--------CCCCeeEEEe
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQPF--------DNGTFDFEFS 173 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf--------~d~SFD~V~s 173 (258)
..++++.+||.+|||. |..+..+++ .|...|+++|.++.... -..-+..+-++ ....+|+++-
T Consensus 21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid 100 (195)
T d1kola2 21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVD 100 (195)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEE
Confidence 4578999999999997 545555554 57778999998643210 11112122222 2346898886
Q ss_pred c-cc------ccc---CChHHHHHHHHhcccCCcEEEEE
Q 025071 174 N-VF------DHA---LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~-~l------~h~---~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
. .. ++. ......++++.++++|||++++.
T Consensus 101 ~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 101 AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 3 11 111 12346789999999999999876
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.80 E-value=0.0074 Score=47.80 Aligned_cols=88 Identities=15% Similarity=-0.003 Sum_probs=55.7
Q ss_pred hcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCC------CCCCCeeEEE
Q 025071 110 RHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQP------FDNGTFDFEF 172 (258)
Q Consensus 110 ~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LP------f~d~SFD~V~ 172 (258)
...++++.+||=+|||. |..+..+++ .|..+|+++|.++... .++....+.+. ....-||+|+
T Consensus 22 ~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vi 101 (174)
T d1jqba2 22 LADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVI 101 (174)
T ss_dssp HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEE
T ss_pred HhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEE
Confidence 34678899999999986 666666655 5766899999864321 11111111100 0224599998
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.++= . ...+++..+.|||||++++.
T Consensus 102 d~~g----~-~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 102 MAGG----G-SETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp ECSS----C-TTHHHHHHHHEEEEEEEEEC
T ss_pred EccC----C-HHHHHHHHHHHhcCCEEEEE
Confidence 7421 1 23457888999999999885
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.72 E-value=0.0035 Score=56.24 Aligned_cols=86 Identities=14% Similarity=0.043 Sum_probs=60.6
Q ss_pred CCCEEEEECCCCCHHHHH-HHhcCCCcEEEEeCCCCCC------------------------------ceeeecCCCCCC
Q 025071 115 NESKALSIGARVGQEVAA-LKLVGVSDSIGIDLVPRPP------------------------------LVIKGDFHAQPF 163 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~-L~~~g~~~v~GvD~s~~~~------------------------------~~~~aDa~~LPf 163 (258)
.+.+|||..||+|..+.. ..+.|...|+.+|+++... .+...|+..+..
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 467999999999998874 4556777899999874210 122233332222
Q ss_pred -CCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 164 -DNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 164 -~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
..+.||+|...- .-.|..++.-..|.++.||.+.++.
T Consensus 125 ~~~~~fDvIDiDP---fGs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDP---FGSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECC---SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccCCC---CCCcHHHHHHHHHHhccCCEEEEEe
Confidence 235799998753 2357788999999999999999983
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.65 E-value=0.028 Score=43.36 Aligned_cols=86 Identities=14% Similarity=-0.007 Sum_probs=53.2
Q ss_pred cCCCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCCC----------CCCCee
Q 025071 111 HFLFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQPF----------DNGTFD 169 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LPf----------~d~SFD 169 (258)
..++++.+||-+||| .|..+..+++ .|. +|+++|.++... .....+...-.. ..+.+|
T Consensus 22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D 100 (170)
T d1e3ja2 22 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN 100 (170)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred hCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCc
Confidence 357789999999998 4445555544 575 899999864321 111111111000 124589
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+-.+ .....+.+..+.|+|||++++.
T Consensus 101 ~vid~~-----g~~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 101 VTIDCS-----GNEKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp EEEECS-----CCHHHHHHHHHHSCTTCEEEEC
T ss_pred eeeecC-----CChHHHHHHHHHHhcCCceEEE
Confidence 888642 1234568889999999998875
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.61 E-value=0.04 Score=43.38 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=58.6
Q ss_pred HHHHhcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCC---------CCCCC
Q 025071 106 DLKQRHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQP---------FDNGT 167 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LP---------f~d~S 167 (258)
.++....++++.+||=+|||. |..+..+++ .|...|+.+|.++.+.. -...+..+.+ ...+-
T Consensus 19 a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 19 AAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGG 98 (174)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred HHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCC
Confidence 334445678999999999997 666665554 67778999998754211 0111111111 02356
Q ss_pred eeEEEeccccccCChHHHHHHHHhcccCC-cEEEEE
Q 025071 168 FDFEFSNVFDHALYPWKFVGEIERTLKPA-GVCVLH 202 (258)
Q Consensus 168 FD~V~s~~l~h~~~p~~~l~Ei~RVLKPG-G~lii~ 202 (258)
+|+|+-++ --...+.+..+.++|| |.+++.
T Consensus 99 ~d~vie~~-----G~~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 99 VDYSLDCA-----GTAQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp BSEEEESS-----CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred CcEEEEec-----ccchHHHHHHHHhhcCCeEEEec
Confidence 89888742 1234678999999997 998775
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.53 E-value=0.026 Score=44.14 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=56.4
Q ss_pred HHHHhcCCCCCCEEEEECCCCCH-HHHHHH-hcCCCcEEEEeCCCCC---------CceeeecCCCC-----CCCCCCee
Q 025071 106 DLKQRHFLFNESKALSIGARVGQ-EVAALK-LVGVSDSIGIDLVPRP---------PLVIKGDFHAQ-----PFDNGTFD 169 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~-~~~~L~-~~g~~~v~GvD~s~~~---------~~~~~aDa~~L-----Pf~d~SFD 169 (258)
.+.....++++.+||=+|||.-. .+..++ ..|...++.+|.++.. ..++..+.+++ -+.++.||
T Consensus 19 a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D 98 (174)
T d1f8fa2 19 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVN 98 (174)
T ss_dssp HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred HHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCc
Confidence 33444567889999999998543 233343 4677778888875421 11221111110 02246799
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+-++ --...+++..++++|||++++.
T Consensus 99 ~vid~~-----G~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 99 FALEST-----GSPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp EEEECS-----CCHHHHHHHHHTEEEEEEEEEC
T ss_pred EEEEcC-----CcHHHHHHHHhcccCceEEEEE
Confidence 998742 1234568899999999998875
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=95.22 E-value=0.036 Score=49.22 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=55.7
Q ss_pred CEEEEECCCCCHHH--------HHHHh----cCC-----CcEEEEeCCCC----------------CCc---eeeecCCC
Q 025071 117 SKALSIGARVGQEV--------AALKL----VGV-----SDSIGIDLVPR----------------PPL---VIKGDFHA 160 (258)
Q Consensus 117 ~~VLDIGcGtG~~~--------~~L~~----~g~-----~~v~GvD~s~~----------------~~~---~~~aDa~~ 160 (258)
-+|.|+||.+|.++ ..+.+ .+. -+|.--|+-.. +.. .+-+.+..
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 57999999999975 23321 121 13566664210 111 24467777
Q ss_pred CCCCCCCeeEEEec-cccccCC------------------h--------H-------HHHHHHHhcccCCcEEEEEec
Q 025071 161 QPFDNGTFDFEFSN-VFDHALY------------------P--------W-------KFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 161 LPf~d~SFD~V~s~-~l~h~~~------------------p--------~-------~~l~Ei~RVLKPGG~lii~v~ 204 (258)
-=||++|.|+++|. ++||+.. | . .+++-=++-|+|||+++++..
T Consensus 133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 78999999999995 6766431 1 1 244444567899999999754
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.042 Score=42.65 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=56.9
Q ss_pred HHHHhcCCCCCCEEEEECC--CCCHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCCC--------CCCC
Q 025071 106 DLKQRHFLFNESKALSIGA--RVGQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQPF--------DNGT 167 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGc--GtG~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf--------~d~S 167 (258)
.+.+...++++.+||-.|+ |.|..+..+++ .|. +|++++.++.... -...|..+..| ..+.
T Consensus 19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g 97 (174)
T d1yb5a2 19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKG 97 (174)
T ss_dssp HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTC
T ss_pred HHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccccccccHHHHhhhhhccCC
Confidence 3444456788999999997 34555555554 575 7998886542110 01112222222 3567
Q ss_pred eeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 168 FDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 168 FD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
||+|+.++ -...+++..++|+|||+++..
T Consensus 98 ~d~v~d~~------g~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 98 IDIIIEML------ANVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp EEEEEESC------HHHHHHHHHHHEEEEEEEEEC
T ss_pred ceEEeecc------cHHHHHHHHhccCCCCEEEEE
Confidence 99999852 234578889999999998875
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.86 E-value=0.011 Score=48.74 Aligned_cols=78 Identities=12% Similarity=0.176 Sum_probs=45.0
Q ss_pred eeeecCCCC--CCCCCCeeEEEec-----ccc-------ccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCC
Q 025071 153 VIKGDFHAQ--PFDNGTFDFEFSN-----VFD-------HALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLF 218 (258)
Q Consensus 153 ~~~aDa~~L--Pf~d~SFD~V~s~-----~l~-------h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~ 218 (258)
++.||..++ -++|+|+|+|+.. ... +.......+.|+.|+|||||.+++........ .. ....
T Consensus 7 ~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~-~~--~~~~ 83 (279)
T d1eg2a_ 7 YDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQG-EA--GSGD 83 (279)
T ss_dssp EEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCC-CT--TBCC
T ss_pred EEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccc-cc--cccc
Confidence 455664432 3568999999984 111 11123456789999999999999876432110 00 1111
Q ss_pred ChhHHHHHhhcCceE
Q 025071 219 SVKPLVKLFRESELV 233 (258)
Q Consensus 219 s~~~l~~lf~~~~~~ 233 (258)
....+..+..+.++.
T Consensus 84 ~~~~~~~~~~~~~~~ 98 (279)
T d1eg2a_ 84 LISIISHMRQNSKML 98 (279)
T ss_dssp HHHHHHHHHHHCCCE
T ss_pred hhhHHHHHHhccCce
Confidence 234455666666654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.73 E-value=0.0077 Score=47.05 Aligned_cols=87 Identities=15% Similarity=0.000 Sum_probs=53.1
Q ss_pred cCCCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeec-C-CCCCCCCCCeeEEEec-cc
Q 025071 111 HFLFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGD-F-HAQPFDNGTFDFEFSN-VF 176 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aD-a-~~LPf~d~SFD~V~s~-~l 176 (258)
..+.++.+||-+||| .|..+..+++ .|. +|+++|.++... .++... . +...-..+.||+|+.. .-
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence 357789999999998 4555555554 575 799999876532 122111 1 1011124579998874 11
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEE
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+.. .+....+.|+|||++++.
T Consensus 102 ~~~~----~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 102 LTDI----DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp STTC----CTTTGGGGEEEEEEEEEC
T ss_pred Cccc----hHHHHHHHhhccceEEEe
Confidence 1111 134678999999998875
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=94.13 E-value=0.02 Score=48.52 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=44.9
Q ss_pred CEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------------------CCceeeecCCC-CCCCCCCeeEE
Q 025071 117 SKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------------------PPLVIKGDFHA-QPFDNGTFDFE 171 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------------------~~~~~~aDa~~-LPf~d~SFD~V 171 (258)
.+|||.-||.|..+..++..|. +|++++.++. ...++.+|+.+ |.-.+++||+|
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI 168 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence 3899999999999999999986 7999997641 01356677533 33335689999
Q ss_pred Eec-cccc
Q 025071 172 FSN-VFDH 178 (258)
Q Consensus 172 ~s~-~l~h 178 (258)
+.. .+.+
T Consensus 169 YlDPMFp~ 176 (250)
T d2oyra1 169 YLDPMFPH 176 (250)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 986 5544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=0.25 Score=37.87 Aligned_cols=87 Identities=14% Similarity=-0.017 Sum_probs=53.5
Q ss_pred cCCCCCCEEEEECCCCCHH-HHHHH-hcCCCcEEEEeCCCCCC---------ceeeecCCCCC--------CCCCCeeEE
Q 025071 111 HFLFNESKALSIGARVGQE-VAALK-LVGVSDSIGIDLVPRPP---------LVIKGDFHAQP--------FDNGTFDFE 171 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~-~~~L~-~~g~~~v~GvD~s~~~~---------~~~~aDa~~LP--------f~d~SFD~V 171 (258)
..+.++.+||=+|||+... +..++ ..|..+|+++|.++... .+...+.+... -....+|+|
T Consensus 22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvv 101 (171)
T d1pl8a2 22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVT 101 (171)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEE
Confidence 3577899999999986554 33333 46776899999864321 11111111100 012468988
Q ss_pred EeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 172 FSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 172 ~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+..+ --...++...+.++|||++++.
T Consensus 102 id~~-----G~~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 102 IECT-----GAEASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp EECS-----CCHHHHHHHHHHSCTTCEEEEC
T ss_pred Eecc-----CCchhHHHHHHHhcCCCEEEEE
Confidence 8742 1134568889999999999885
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.41 E-value=0.49 Score=35.90 Aligned_cols=94 Identities=16% Similarity=0.101 Sum_probs=56.1
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCH-HHHHHH-hcCCCcEEEEeCCCCCC---------ceeeecCCCCCC-------CC
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQ-EVAALK-LVGVSDSIGIDLVPRPP---------LVIKGDFHAQPF-------DN 165 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~-~~~~L~-~~g~~~v~GvD~s~~~~---------~~~~aDa~~LPf-------~d 165 (258)
+..+.+...++++.+||=.|||... .+..++ ..|...|+++|.++... .++..+-..-+. ..
T Consensus 17 y~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~ 96 (176)
T d2fzwa2 17 YGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTD 96 (176)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred HHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcC
Confidence 3344555568899999999998322 233333 46877899999765421 111111111111 23
Q ss_pred CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 166 GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+-+|+|+..+ -....++....++++||.+++.
T Consensus 97 ~g~D~vid~~-----G~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 97 GGVDYSFECI-----GNVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp SCBSEEEECS-----CCHHHHHHHHHTBCTTTCEEEE
T ss_pred CCCcEeeecC-----CCHHHHHHHHHhhcCCceeEEE
Confidence 5689998742 1234567889999999877654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=91.82 E-value=0.69 Score=35.64 Aligned_cols=94 Identities=15% Similarity=0.045 Sum_probs=53.6
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHH-HHH-HhcCCCcEEEEeCCCCCC---------ceeeecCCCCC-------CCC
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEV-AAL-KLVGVSDSIGIDLVPRPP---------LVIKGDFHAQP-------FDN 165 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~-~~L-~~~g~~~v~GvD~s~~~~---------~~~~aDa~~LP-------f~d 165 (258)
|..+++...++++.+||=+|||..... ..+ +..|...|+++|.++... .++.....+-. ..+
T Consensus 16 ~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~ 95 (174)
T d1p0fa2 16 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTN 95 (174)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred HHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcC
Confidence 334445556889999999999865543 333 346877899999875421 12211111111 123
Q ss_pred CCeeEEEeccccccCChHHHHHHHHhcccC-CcEEEEE
Q 025071 166 GTFDFEFSNVFDHALYPWKFVGEIERTLKP-AGVCVLH 202 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKP-GG~lii~ 202 (258)
.-+|.|+-.+ .....+.+..+.+++ +|.+++.
T Consensus 96 ~G~d~vid~~-----g~~~~~~~~~~~~~~~~G~~v~v 128 (174)
T d1p0fa2 96 GGVDYAVECA-----GRIETMMNALQSTYCGSGVTVVL 128 (174)
T ss_dssp SCBSEEEECS-----CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCcEEEEcC-----CCchHHHHHHHHHHHhcCceEEE
Confidence 4588887642 112344566665654 6888775
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=91.63 E-value=0.26 Score=37.85 Aligned_cols=86 Identities=12% Similarity=0.057 Sum_probs=53.2
Q ss_pred CCCCCCEEEEECCCCCHHH-HHHH-hcCCCcEEEEeCCCCC---------CceeeecCCCCC-----CCCCCeeEEEecc
Q 025071 112 FLFNESKALSIGARVGQEV-AALK-LVGVSDSIGIDLVPRP---------PLVIKGDFHAQP-----FDNGTFDFEFSNV 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~-~~L~-~~g~~~v~GvD~s~~~---------~~~~~aDa~~LP-----f~d~SFD~V~s~~ 175 (258)
.++++..||-+|||+.... ..++ ..|...|+++|.++.. ..++..+.+... ...+.+|+|+.++
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV 108 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEec
Confidence 4678899999999865443 3343 4677788999976421 112211111000 0234599998742
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
- -...++...+.|+|||++++.
T Consensus 109 g-----~~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 109 G-----SQATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp C-----CHHHHHHGGGGEEEEEEEEEC
T ss_pred C-----cchHHHHHHHHHhCCCEEEEE
Confidence 1 134568899999999999875
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.58 E-value=0.15 Score=39.00 Aligned_cols=85 Identities=21% Similarity=0.189 Sum_probs=52.9
Q ss_pred cCCCCCCEEEEECCC--CCHHHHHH-HhcCCCcEEEEeCCCCCC---------ceeeecCCCCCC--------CCCCeeE
Q 025071 111 HFLFNESKALSIGAR--VGQEVAAL-KLVGVSDSIGIDLVPRPP---------LVIKGDFHAQPF--------DNGTFDF 170 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG--tG~~~~~L-~~~g~~~v~GvD~s~~~~---------~~~~aDa~~LPf--------~d~SFD~ 170 (258)
..+.++.+||=+||| .|..+..+ +..|...|+++|.++... .++.. ..-.+ ..+.||+
T Consensus 23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~--~~~~~~~~~~~~~~~~~~d~ 100 (170)
T d1jvba2 23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINA--SMQDPLAEIRRITESKGVDA 100 (170)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEET--TTSCHHHHHHHHTTTSCEEE
T ss_pred hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeecc--CCcCHHHHHHHHhhcccchh
Confidence 357789999999974 33334433 446777899999764211 11211 11111 2356999
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+..+- -...++...+.++|||++++.
T Consensus 101 vid~~g-----~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 101 VIDLNN-----SEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp EEESCC-----CHHHHTTGGGGEEEEEEEEEC
T ss_pred hhcccc-----cchHHHhhhhhcccCCEEEEe
Confidence 987421 234557788999999998775
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.50 E-value=0.19 Score=43.26 Aligned_cols=33 Identities=18% Similarity=0.024 Sum_probs=27.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCC
Q 025071 115 NESKALSIGARVGQEVAALKLVG-VSDSIGIDLV 147 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s 147 (258)
.+..|||||+|.|.++..|.+.+ ...|+++|+.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D 76 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKR 76 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECC
Confidence 45689999999999999987653 4579999975
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=90.02 E-value=0.13 Score=41.29 Aligned_cols=51 Identities=8% Similarity=0.163 Sum_probs=31.8
Q ss_pred eeeecCCCC--CCCCCCeeEEEec---cc-----cccCCh-------HHHHHHHHhcccCCcEEEEEe
Q 025071 153 VIKGDFHAQ--PFDNGTFDFEFSN---VF-----DHALYP-------WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 153 ~~~aDa~~L--Pf~d~SFD~V~s~---~l-----~h~~~p-------~~~l~Ei~RVLKPGG~lii~v 203 (258)
+..||..++ -++|+|+|+|+.. .. +...+. ...++|+.|||||||.+++..
T Consensus 7 i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 7 IHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp EEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 455554321 2458889988874 11 111112 246789999999999887654
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=89.76 E-value=0.9 Score=34.87 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=56.4
Q ss_pred HHHHhcCCCCCCEEEEECCCC--CHHHHHHHh-cCCCcEEEEeCCCCC---------CceeeecCCCCCC--------CC
Q 025071 106 DLKQRHFLFNESKALSIGARV--GQEVAALKL-VGVSDSIGIDLVPRP---------PLVIKGDFHAQPF--------DN 165 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGt--G~~~~~L~~-~g~~~v~GvD~s~~~---------~~~~~aDa~~LPf--------~d 165 (258)
.|.+...++++.+||=.|+|. |..+..|++ .|. +|++++.++.. ..++.. .+-.+ ..
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~--~~~~~~~~~~~~~~~ 96 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNY--KTVNSLEEALKKASP 96 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEET--TSCSCHHHHHHHHCT
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhccc--ccccHHHHHHHHhhc
Confidence 444555678899999888865 445556665 464 89999865421 112211 11111 33
Q ss_pred CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 166 GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+-+|+|+..+ ....+++..+.|+|||.++..
T Consensus 97 ~Gvd~v~D~v------G~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 97 DGYDCYFDNV------GGEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp TCEEEEEESS------CHHHHHHHGGGEEEEEEEEEC
T ss_pred CCCceeEEec------CchhhhhhhhhccCCCeEEee
Confidence 5689988742 134678999999999998875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.05 E-value=0.32 Score=36.90 Aligned_cols=84 Identities=13% Similarity=0.028 Sum_probs=48.2
Q ss_pred CCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCC-----CCCCCeeEEEecc
Q 025071 112 FLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQP-----FDNGTFDFEFSNV 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LP-----f~d~SFD~V~s~~ 175 (258)
.++++.+||=+|||+ |..+..+++ .| .+|+++|.++... .++..+.++.. ...+.+|.|.+..
T Consensus 24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~ 102 (166)
T d1llua2 24 NARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV 102 (166)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS
T ss_pred CCCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc
Confidence 467899999999974 333444444 57 4899999864321 11211111000 0122334444422
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
. ...+....+.|+|||++++.
T Consensus 103 -----~-~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 103 -----S-NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp -----C-HHHHHHHHTTEEEEEEEEEC
T ss_pred -----c-chHHHHHHHHhcCCcEEEEE
Confidence 1 24567889999999998875
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.84 E-value=0.64 Score=34.85 Aligned_cols=83 Identities=12% Similarity=0.068 Sum_probs=48.9
Q ss_pred CCCCCCEEEEECCCCCHHH-HHHHh-cCCCcEEEEeCCCCCC--------ceeeecCCCCCC-------CCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEV-AALKL-VGVSDSIGIDLVPRPP--------LVIKGDFHAQPF-------DNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~-~~L~~-~g~~~v~GvD~s~~~~--------~~~~aDa~~LPf-------~d~SFD~V~s~ 174 (258)
.+.++.+||=.|||+-... ..+++ .|. +|+++|.++... ..+. +..+-.+ .++-+|+|++.
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~ 101 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVV-NPLKEDAAKFMKEKVGGVHAAVVTA 101 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEE-CTTTSCHHHHHHHHHSSEEEEEESS
T ss_pred CCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceec-ccccchhhhhcccccCCCceEEeec
Confidence 4778999999999875543 33333 465 799999764321 1111 1111111 12334444432
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
. -...+....+.|+|||++++.
T Consensus 102 ~------~~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 102 V------SKPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp C------CHHHHHHHHHHEEEEEEEEEC
T ss_pred C------CHHHHHHHHHHhccCCceEec
Confidence 1 134578999999999998885
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=88.82 E-value=1.6 Score=32.96 Aligned_cols=94 Identities=15% Similarity=0.105 Sum_probs=53.6
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHH--HHHHhcCCCcEEEEeCCCCCC---------ceeee-cCCCCC------CCC
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEV--AALKLVGVSDSIGIDLVPRPP---------LVIKG-DFHAQP------FDN 165 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~--~~L~~~g~~~v~GvD~s~~~~---------~~~~a-Da~~LP------f~d 165 (258)
+..+.+...++++.+||=+|||.+... ..++..|...|+++|.++... ..+.. +.++.- -.+
T Consensus 17 y~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (176)
T d2jhfa2 17 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSN 96 (176)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred HHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhc
Confidence 334455556889999999999855432 233456777899999875421 11111 111100 123
Q ss_pred CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 166 GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+.+|+|+..+ -.....+...+.+++||..++.
T Consensus 97 ~G~D~vid~~-----G~~~~~~~a~~~~~~~~g~~~~ 128 (176)
T d2jhfa2 97 GGVDFSFEVI-----GRLDTMVTALSCCQEAYGVSVI 128 (176)
T ss_dssp SCBSEEEECS-----CCHHHHHHHHHHBCTTTCEEEE
T ss_pred CCCCEEEecC-----CchhHHHHHHHHHhcCCcceEE
Confidence 5689888742 1123446677788887544443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.80 E-value=1.5 Score=33.74 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=51.9
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHH-H-HHHhcCCCcEEEEeCCCCCC---------ceeeecCCCCC-------CCCCC
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEV-A-ALKLVGVSDSIGIDLVPRPP---------LVIKGDFHAQP-------FDNGT 167 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~-~-~L~~~g~~~v~GvD~s~~~~---------~~~~aDa~~LP-------f~d~S 167 (258)
.+.....++++..||=+|||..... . .++..|..+|+++|.++... .++...-.+.. ...+-
T Consensus 20 Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G 99 (176)
T d1d1ta2 20 AAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNN 99 (176)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhcccc
Confidence 3444455788999999999865543 2 23446777899999875421 11111111111 12346
Q ss_pred eeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 168 FDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 168 FD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+|+..+ -.+.....-+..+++++|++++.
T Consensus 100 ~d~vi~~~----g~~~~~~~a~~~~~~~~G~~v~v 130 (176)
T d1d1ta2 100 VGYTFEVI----GHLETMIDALASCHMNYGTSVVV 130 (176)
T ss_dssp CCEEEECS----CCHHHHHHHHTTSCTTTCEEEEC
T ss_pred ceEEEEeC----CchHHHHHHHHHhhcCCeEEEEE
Confidence 88887631 12233333344455666888775
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.47 E-value=0.4 Score=36.65 Aligned_cols=88 Identities=17% Similarity=0.108 Sum_probs=53.0
Q ss_pred HHHhcCCCCCCEEEEECC--CCCHHHHHHHh-cCCCcEEEEeCCCC--------CCceeeecCCCCCC--------CCCC
Q 025071 107 LKQRHFLFNESKALSIGA--RVGQEVAALKL-VGVSDSIGIDLVPR--------PPLVIKGDFHAQPF--------DNGT 167 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGc--GtG~~~~~L~~-~g~~~v~GvD~s~~--------~~~~~~aDa~~LPf--------~d~S 167 (258)
+.+...+.++.+||=.|. |.|..+..+++ .|. .+++++.++. ... ...|..+-.+ ....
T Consensus 17 l~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~-~vi~~~~~~~~~~v~~~t~~~g 94 (183)
T d1pqwa_ 17 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVE-YVGDSRSVDFADEILELTDGYG 94 (183)
T ss_dssp HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCS-EEEETTCSTHHHHHHHHTTTCC
T ss_pred HHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeeccccccccccccccc-ccccCCccCHHHHHHHHhCCCC
Confidence 344455778899999873 24445555554 465 6777765421 111 1112222222 2457
Q ss_pred eeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 168 FDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 168 FD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
||+|+..+- ...+++..++|+|+|+++..
T Consensus 95 ~d~v~d~~g------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 95 VDVVLNSLA------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEEEECCC------THHHHHHHHTEEEEEEEEEC
T ss_pred EEEEEeccc------chHHHHHHHHhcCCCEEEEE
Confidence 999998532 23568899999999998875
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=87.45 E-value=0.43 Score=36.40 Aligned_cols=90 Identities=14% Similarity=0.096 Sum_probs=57.1
Q ss_pred HHHHHHhcCCCCCCEEEEECCCC--CHHHHHHHh-cCCCcEEEEeCCCCC---------CceeeecCCCCCC--------
Q 025071 104 FQDLKQRHFLFNESKALSIGARV--GQEVAALKL-VGVSDSIGIDLVPRP---------PLVIKGDFHAQPF-------- 163 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGt--G~~~~~L~~-~g~~~v~GvD~s~~~---------~~~~~aDa~~LPf-------- 163 (258)
+..|.+...++++.+||=.|+|. |..+..+++ .|. +|++++.++.. ..++ |..+-.+
T Consensus 17 ~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi--~~~~~d~~~~v~~~t 93 (179)
T d1qora2 17 YYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVI--NYREEDLVERLKEIT 93 (179)
T ss_dssp HHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEE--ETTTSCHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEE--ECCCCCHHHHHHHHh
Confidence 33444445678899999997774 556666665 464 89999986531 1122 2222222
Q ss_pred CCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 164 DNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 164 ~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..+-+|+|+..+- ...+.+..+.++|+|++++.
T Consensus 94 ~g~g~d~v~d~~g------~~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 94 GGKKVRVVYDSVG------RDTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp TTCCEEEEEECSC------GGGHHHHHHTEEEEEEEEEC
T ss_pred CCCCeEEEEeCcc------HHHHHHHHHHHhcCCeeeec
Confidence 3467999887421 12357889999999988775
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.32 E-value=0.19 Score=39.63 Aligned_cols=93 Identities=12% Similarity=0.110 Sum_probs=56.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCC--CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeec---CC-CCCCCCCCe
Q 025071 105 QDLKQRHFLFNESKALSIGARV--GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGD---FH-AQPFDNGTF 168 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGt--G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aD---a~-~LPf~d~SF 168 (258)
..|.+.+...++.+||=-|++. |..+..|++ .|. +|+++.-++... .++.-+ .+ .....++.+
T Consensus 21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gv 99 (176)
T d1xa0a2 21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRW 99 (176)
T ss_dssp HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCE
T ss_pred HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCc
Confidence 3355556677788999998654 445556664 564 788887654321 111100 01 112345789
Q ss_pred eEEEeccccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|+|+.++- ...+.+..++|+|||+++..-.
T Consensus 100 D~vid~vg------g~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 100 AAAVDPVG------GRTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp EEEEECST------TTTHHHHHHTEEEEEEEEECSC
T ss_pred CEEEEcCC------chhHHHHHHHhCCCceEEEeec
Confidence 99887532 1235789999999999988643
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=86.61 E-value=0.33 Score=39.94 Aligned_cols=53 Identities=17% Similarity=0.325 Sum_probs=34.3
Q ss_pred ceeeecCCC-C-CCCCCCeeEEEec----c-ccccC----------ChHHHHHHHHhcccCCcEEEEEec
Q 025071 152 LVIKGDFHA-Q-PFDNGTFDFEFSN----V-FDHAL----------YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 152 ~~~~aDa~~-L-Pf~d~SFD~V~s~----~-l~h~~----------~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
.+..||..+ | -++++|+|+|+.. . .+... .-...++|++|+|||+|.+++...
T Consensus 14 ~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~ 83 (320)
T d1booa_ 14 SMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 83 (320)
T ss_dssp EEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccccc
Confidence 356666432 1 1458999999884 1 11110 123468999999999999998754
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=85.96 E-value=0.65 Score=38.14 Aligned_cols=122 Identities=15% Similarity=0.115 Sum_probs=72.6
Q ss_pred EEEEECCCCCHHHHHHHhcCCCcEEEEeCCC---------CCCceeeecCCCCCCCC-CCeeEEEec----ccc------
Q 025071 118 KALSIGARVGQEVAALKLVGVSDSIGIDLVP---------RPPLVIKGDFHAQPFDN-GTFDFEFSN----VFD------ 177 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~---------~~~~~~~aDa~~LPf~d-~SFD~V~s~----~l~------ 177 (258)
+|||+=||.|.....|.+.|+..+.++|+.+ .+..+..+|..++...+ ...|+++.+ .+.
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS~ag~~~ 81 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPCQSWSEGGSLR 81 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEECCCCTTTSSSSCCC
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeecccccccccccccc
Confidence 7999999999999999888986677999864 23456778888775432 368999874 121
Q ss_pred ccCChH-HH---HHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE-Eeeeec--CCCCe
Q 025071 178 HALYPW-KF---VGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV-AVRKVD--GFGLD 244 (258)
Q Consensus 178 h~~~p~-~~---l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~-~v~~v~--g~~l~ 244 (258)
...++. .. +-++.+.+||.-.++=-|+.-. +.......+.+...+.+.|.. ....++ -+|++
T Consensus 82 g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~~~~-----~~~~~~~~~~~l~~l~~lGY~v~~~vlna~~~GvP 150 (324)
T d1dcta_ 82 GIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMM-----AQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVA 150 (324)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCCSEEEEEEEGGGG-----SGGGHHHHHHHHHHHHHHHEEEEEEEEEGGGGTCS
T ss_pred cccccccchHHHHHHHHHhhCCceeecccccccc-----ccccchhhHHHHhHHhhCCCccceeeeecccccCc
Confidence 122443 22 2456667788544433354211 111111235566666666643 333332 56666
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=84.97 E-value=0.57 Score=38.37 Aligned_cols=45 Identities=7% Similarity=-0.023 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
.++++++... -.++..|||.=||+|..+.+..+.| ...+|+|+++
T Consensus 238 ~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~lg-R~~Ig~El~~ 282 (320)
T d1booa_ 238 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKP 282 (320)
T ss_dssp HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCH
T ss_pred HHHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHHcC-CcEEEEeCCH
Confidence 5677777644 3578999999999999998877787 4899999974
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=84.27 E-value=0.22 Score=38.18 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=51.0
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCC-CCCCCCCeeEEEecc-cc
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHA-QPFDNGTFDFEFSNV-FD 177 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~-LPf~d~SFD~V~s~~-l~ 177 (258)
..++++.+||=+|||+ |..+..+++ .|. +++++|.++... .++...... .--..+.+|+|+..+ -.
T Consensus 26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~ 104 (168)
T d1uufa2 26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAP 104 (168)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSC
T ss_pred hCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecc
Confidence 4578899999999874 444455554 575 677888754321 111111000 001225799998742 11
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..++...+.|+|||++++.
T Consensus 105 ------~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 105 ------HNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp ------CCHHHHHTTEEEEEEEEEC
T ss_pred ------hhHHHHHHHHhcCCEEEEe
Confidence 1246788999999999885
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=84.05 E-value=3.6 Score=30.76 Aligned_cols=94 Identities=17% Similarity=0.118 Sum_probs=53.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHH--HHHhcCCCcEEEEeCCCCCC---------ceeeecCCCCCC-------CC
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVA--ALKLVGVSDSIGIDLVPRPP---------LVIKGDFHAQPF-------DN 165 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~--~L~~~g~~~v~GvD~s~~~~---------~~~~aDa~~LPf-------~d 165 (258)
|..+.+...++++.+||=+|||.+.... .++..|...|+++|.++... .++...-+.-.. ..
T Consensus 17 y~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~ 96 (175)
T d1cdoa2 17 FGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTN 96 (175)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHT
T ss_pred HHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhcc
Confidence 3344445568899999999999865433 33446767899999875421 122111111110 12
Q ss_pred CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 166 GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.-+|+|+-.+- ....+....+.+++||..++.
T Consensus 97 ~G~d~vid~~G-----~~~~~~~a~~~~~~g~~~~~~ 128 (175)
T d1cdoa2 97 GGVDFSLECVG-----NVGVMRNALESCLKGWGVSVL 128 (175)
T ss_dssp SCBSEEEECSC-----CHHHHHHHHHTBCTTTCEEEE
T ss_pred CCcceeeeecC-----CHHHHHHHHHHhhCCCcceeE
Confidence 45888887421 133456667777776554444
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.75 E-value=2.2 Score=32.78 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=54.5
Q ss_pred HHHhcCCCCC--CEEEEECC--CCCHHHHHHHh-cCCCcEEEEeCCCCCC--------ceeeecCCCCCC-------CCC
Q 025071 107 LKQRHFLFNE--SKALSIGA--RVGQEVAALKL-VGVSDSIGIDLVPRPP--------LVIKGDFHAQPF-------DNG 166 (258)
Q Consensus 107 L~~~~~l~~~--~~VLDIGc--GtG~~~~~L~~-~g~~~v~GvD~s~~~~--------~~~~aDa~~LPf-------~d~ 166 (258)
+.+...++++ ..||--|+ |.|..+..+++ .|...|++++.++... .-...|..+-.+ .++
T Consensus 20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~ 99 (187)
T d1vj1a2 20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPG 99 (187)
T ss_dssp HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTT
T ss_pred HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhcc
Confidence 3344456655 67998773 57888888887 6766677777542110 001111111111 134
Q ss_pred CeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 167 TFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 167 SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
-+|+|+-.+- ...+....++|+|||+++..
T Consensus 100 GvDvv~D~vG------g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 100 GVDVYFDNVG------GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp CEEEEEESSC------HHHHHHHHTTEEEEEEEEEC
T ss_pred CceEEEecCC------chhHHHHhhhccccccEEEe
Confidence 6999987531 34568899999999999874
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=81.46 E-value=0.31 Score=37.60 Aligned_cols=84 Identities=18% Similarity=0.128 Sum_probs=50.6
Q ss_pred cCCCCCCEEEEECC-CC-CHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCCCCC---CCCCeeEEEecccc
Q 025071 111 HFLFNESKALSIGA-RV-GQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHAQPF---DNGTFDFEFSNVFD 177 (258)
Q Consensus 111 ~~l~~~~~VLDIGc-Gt-G~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~LPf---~d~SFD~V~s~~l~ 177 (258)
..++++.+||=.|. |. |..+..+++ .|. +|++++.++..... ..-|..+.+. ..+.+|+|+..+ -
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~-G 100 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVR-G 100 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECS-C
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeeehhhhhhhhhcccccccccccc-c
Confidence 45788999999885 33 455555655 575 79999976432210 0111111110 135699998731 1
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..+.+..+.|+|||+++..
T Consensus 101 ------~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 101 ------KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp ------TTHHHHHTTEEEEEEEEEC
T ss_pred ------hhHHHHHHHHhcCCcEEEE
Confidence 1246788999999998774
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=80.71 E-value=1.2 Score=35.27 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
..++++++... -.+|..|||-=||+|..+.+..+.| .+.+|+|+++
T Consensus 199 ~~L~~~lI~~~-s~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~ 244 (256)
T d1g60a_ 199 RDLIERIIRAS-SNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNA 244 (256)
T ss_dssp HHHHHHHHHHH-CCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCH
T ss_pred hhHHHHHHHHh-CCCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCH
Confidence 35666676644 3578899999999999998877777 5899999864
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=80.24 E-value=1.3 Score=35.52 Aligned_cols=47 Identities=21% Similarity=0.163 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR 149 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~ 149 (258)
.+++++++... -.+|..|||-=||+|..+.+..+.| .+.+|+|+++.
T Consensus 194 ~~L~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~lg-R~~ig~El~~~ 240 (279)
T d1eg2a_ 194 AAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPV 240 (279)
T ss_dssp HHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTH
T ss_pred hhHHHHHHHhh-cCCCCEEEecCCCCcHHHHHHHHhC-CeEEEEeCCHH
Confidence 34666666643 3578899999999999988877777 58999999753
|