Citrus Sinensis ID: 025074

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHccccccccccHHcHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEEcccccEEEccccccccccccccEEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEEcccccEEEccEccccccccccccEEEEEEHHcccccccccccccc
Coil and Loop (DISEMBL)
MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASlgysssngneksnLDNLVKAVAGVTVisqhdqakpskgtkRREKRAQQEAAREQRIQEEQSNivsdrtvedeklekklgplgltvndikpdghclYRAVEDQlahlsggeesAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHImiysgsfpdvemgkeysnggsdssgsSIILSYHRhafglgehynsvipi
Flexible Loop (DISEMBL)
mlsrhrkeisqlqnkETELkkaaakgskaeqkakkkqVEEEISRLSAKLREKHAKELAslgysssngneKSNLDNLVKAVAGVTVisqhdqakpskgtkrrEKRAQQEAAreqriqeeqsnivsdrtvedeklekklgplgltvndikPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFglgehynsvipi
Low Complexity Region (SEG)
MLSRHRKEISQLQNKETelkkaaakgskaeqkakkkqveeeISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKrrekraqqeaareqriqeeqSNIVSDRTVEDeklekklgplglTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYsnggsdssgssIILSYHRHAFGLGEHYNSVIPI
Disordered region (IsUnstruct)
***************************************************************************LVKAVAGVTVI****************************************************PLGLTVNDIKPDGHCLYRAVEDQLAH*************RFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD******************IILSYHRHAFGLGEHYN*****
Disordered Region (DISOPRED)
**SRHR*E*************************************************************************************************************************DEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMG*********SSGSSIILSYHRHAFGLGEHYNSVIPI
Disordered Region (DISEMBL)
******************************************SRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVIS****************************QEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAH*************RFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKE*********GSSIILSYHRHAFGLGEHYNSVIPI
Disordered Region (DISPRO)
MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGY****************************************************IQ****NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
Q5ZIP6	302	OTU domain-containing pro	yes	no	0.934	0.798	0.355	1e-34
Q7ZV00	293	OTU domain-containing pro	yes	no	0.914	0.805	0.362	2e-34
Q8N6M0	293	OTU domain-containing pro	yes	no	0.910	0.802	0.355	4e-34
Q6GM06	294	OTU domain-containing pro	N/A	no	0.930	0.816	0.344	4e-34
Q5M8L0	294	OTU domain-containing pro	yes	no	0.922	0.809	0.335	8e-34
Q8K2H2	294	OTU domain-containing pro	yes	no	0.926	0.812	0.330	8e-31
Q6IE21	290	OTU domain-containing pro	no	no	0.926	0.824	0.308	3e-30
Q7L8S5	288	OTU domain-containing pro	no	no	0.910	0.815	0.309	3e-27
Q9UUK3	324	Ubiquitin thioesterase ot	yes	no	0.957	0.762	0.245	7e-20
P38747	307	OTU domain-containing pro	yes	no	0.934	0.785	0.257	3e-14

>sp|Q5ZIP6|OTU6B_CHICK OTU domain-containing protein 6B OS=Gallus gallus GN=OTUD6B PE=2 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/287 (35%), Positives = 148/287 (51%), Gaps = 46/287 (16%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           ++ R R+E  +LQ K   +K A  K  K     ++KQ+ EE+++L A+L +KH +EL  L
Sbjct: 18  LVKRQRREKRELQAKIQGMKNAVPKNDKK----RRKQLAEEVAKLEAELEQKHKEELKQL 73

Query: 61  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ---AKPSKGTKRREKRAQQE-AAREQRIQ 116
             +     E++ +D++   VA   +  +  Q    + SK  KRREK+A  E    E+  +
Sbjct: 74  KEAMP---EQNKIDSIADGVANFELEGREQQIQHPRISKAQKRREKKAALEKEREERIAE 130

Query: 117 EEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLA--HLSGGEESAQS 174
            E  N+   R +E +KL   L    L +  I  DGHC+YRA+EDQL   H S    + ++
Sbjct: 131 AEIENLTGARHLESQKLASLLAARHLEIKQIPSDGHCMYRAIEDQLKDHHNSWTVATLRN 190

Query: 175 QV--------------------------ERFENYCKEVESTAAWGGELELRALTHCLRKH 208
           Q                           E FE YC ++ +TAAWGG+LELRAL+H L+  
Sbjct: 191 QTAKYIHSHFDDFLPFLTNPNTGDMYSKEEFEKYCDDIANTAAWGGQLELRALSHILQTP 250

Query: 209 IMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 255
           I +     P + +G+EY       SG  IIL Y RHA+GLGEHYNSV
Sbjct: 251 IEVVQMDSPSIIVGEEY-------SGKPIILVYMRHAYGLGEHYNSV 290

Gallus gallus (taxid: 9031)

>sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1

 Score =  145 bits (367), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/290 (36%), Positives = 146/290 (50%), Gaps = 54/290 (18%)

Query: 4   RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYS 63
           +HRKE   LQ K   +K A  K  K     ++KQ+ E+I++L A+L +KH  EL     S
Sbjct: 14  QHRKEKKDLQAKIQSMKNAVPKNDKK----RRKQLTEDIAKLEAELSQKHENELKLQNTS 69

Query: 64  SSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSK------GTKRREKRAQQEAAREQRIQE 117
           S        ++ +  A+  ++V +  +Q+ PSK        KRR+K+A  E  RE RI E
Sbjct: 70  S--------VEEVSDALDSMSVANHEEQSDPSKQSRTSKAQKRRDKKAALEKEREMRIAE 121

Query: 118 -EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAH--LSGG-----E 169
            E  N+   R  E  KL +KL    L + +I  DGHC+YRAVE QL    L+ G     +
Sbjct: 122 AEVENLSGSRHQEGLKLREKLVERHLQIKEISSDGHCMYRAVEHQLTERGLALGLKELRD 181

Query: 170 ESAQSQ---------------------VERFENYCKEVESTAAWGGELELRALTHCLRKH 208
           ++AQ                        E FE YC +V  TAAWGG+LEL+AL+  L+  
Sbjct: 182 QTAQYMRSHADDFMPFLTNPNTGDMYTAEEFEKYCSDVADTAAWGGQLELKALSQVLQLP 241

Query: 209 IMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 258
           I +     P + +G+EY           I L Y RHA+GLGEHYNSV P+
Sbjct: 242 IEVIQADSPCITIGEEYDK-------PKITLIYMRHAYGLGEHYNSVEPL 284

Danio rerio (taxid: 7955)

>sp|Q8N6M0|OTU6B_HUMAN OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/281 (35%), Positives = 149/281 (53%), Gaps = 46/281 (16%)

Query: 4   RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYS 63
           RHRKE  +LQ K   +K A  K  K     ++KQ+ E++++L  ++ +KH +EL  L  +
Sbjct: 18  RHRKEKKELQAKIQGMKNAVPKNDKK----RRKQLTEDVAKLEKEMEQKHREELEQLKLT 73

Query: 64  SSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQE-AAREQRIQEEQSNI 122
           +    +++ +D++  AV    ++ ++   + SK  KRREK+A  E    E+  + E  N+
Sbjct: 74  T----KENKIDSV--AVNISNLVLENQPPRISKAQKRREKKAALEKEREERIAEAEIENL 127

Query: 123 VSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQL----------AHLSGGEESA 172
              R +E EKL + L    L +  I  DGHC+Y+A+EDQL          A  S   E  
Sbjct: 128 TGARHMESEKLAQILAARQLEIKQIPSDGHCMYKAIEDQLKEKDCALTVVALRSQTAEYM 187

Query: 173 QSQVE------------------RFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSG 214
           QS VE                   F+ YC+++ +TAAWGG+LELRAL+H L+  I I   
Sbjct: 188 QSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQA 247

Query: 215 SFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 255
             P + +G+EYS          +IL Y RHA+GLGEHYNSV
Sbjct: 248 DSPPIIVGEEYSK-------KPLILVYMRHAYGLGEHYNSV 281

Homo sapiens (taxid: 9606)

>sp|Q6GM06|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2 SV=1

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 148/287 (51%), Gaps = 47/287 (16%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           ++ + RKE  ++Q K   +K +  K  K     ++KQ+ E+I++L A++  +H +EL +L
Sbjct: 13  LIKQQRKEKKEVQAKIQCMKNSVPKNDKK----RRKQMTEDIAKLEAEVEARHKEELEAL 68

Query: 61  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKP--SKGTKRREKRAQQEAAREQRIQE- 117
               +   + S++ N    V  + + S+    +P  SK  KRREK+A QE  R+ RI E 
Sbjct: 69  AQKPTEPTQVSSITN---GVTSLDLGSEEPVQQPRVSKAQKRREKKAAQEKERDDRIAEA 125

Query: 118 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVE------------------ 159
           E +N+   R +E +KL + L    L +  I  DGHC+YRA+E                  
Sbjct: 126 EIANLSGARHLESQKLAQILAERELQIRQIPSDGHCMYRAIEHQLNEQGNSLTVANLRSQ 185

Query: 160 ----------DQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHI 209
                     D L  L+          E F+ YC ++ +T AWGG+LELRAL+H L+  I
Sbjct: 186 TADYMQKRAEDFLPFLTNSSTGDMYTQEEFQKYCTDIVNTPAWGGQLELRALSHILKTPI 245

Query: 210 -MIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 255
            +I + S P V +G+EYSN         I L Y RHA+GLGEHYNSV
Sbjct: 246 EVIQAESLPIV-IGEEYSN-------KPITLVYMRHAYGLGEHYNSV 284

Xenopus laevis (taxid: 8355)

>sp|Q5M8L0|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b PE=2 SV=1

 Score =  144 bits (362), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 142/289 (49%), Gaps = 51/289 (17%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           ++ +HRKE   LQ K   +K +  K  K     ++KQ+ E+I++L A L  +H +EL + 
Sbjct: 13  LIKQHRKEKRDLQAKIQSMKNSVPKNDKK----RRKQLTEDIAKLEADLDVRHKEELEAF 68

Query: 61  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQA-----KPSKGTKRREKRAQQEAAREQRI 115
                   + S + N      GVT +   ++A     + SK  KRREK+A QE  R++RI
Sbjct: 69  AQKQPEPTQVSGITN------GVTSLDLGNEAPVQQPRQSKAQKRREKKAAQEKERDERI 122

Query: 116 QE-EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVE--------------- 159
            E E +N+   R +E +KL + L    L +  I  DGHC+YRA+E               
Sbjct: 123 AEAEIANLSGARHLESQKLARILAERELQIRQIPSDGHCMYRAIEHQLRERGNDLTVANL 182

Query: 160 -------------DQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLR 206
                        D L  L+          E F  YC ++ +T AWGG+LELRAL+H L+
Sbjct: 183 RSQTADYMQNHAEDFLPFLTNSSTGDMYTQEEFLKYCTDIVNTPAWGGQLELRALSHILK 242

Query: 207 KHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 255
             I +       + +G+EYS+        +I L Y RHA+GLGEHYNSV
Sbjct: 243 TAIEVIQAESSPIVIGEEYSS-------KAITLVYMRHAYGLGEHYNSV 284

Xenopus tropicalis (taxid: 8364)

>sp|Q8K2H2|OTU6B_MOUSE OTU domain-containing protein 6B OS=Mus musculus GN=Otud6b PE=2 SV=1

 Score =  134 bits (336), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 141/284 (49%), Gaps = 45/284 (15%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           ++ RHRKE  +LQ K   +K A  K  K     ++KQ+ E++++L  ++ +KH +EL  L
Sbjct: 15  LVRRHRKEKKELQAKIQGMKNAVPKNDKK----RRKQLTEDVAKLEREMEQKHREELEQL 70

Query: 61  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQE-AAREQRIQEEQ 119
              +      S +D++  AV    ++ ++   + SK  KRREK+A  E    E+  + E 
Sbjct: 71  KQLTFKD---SKIDSV--AVNISNLVLENQPPRISKAQKRREKKAALEKEREERIAEAEI 125

Query: 120 SNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQL----------------- 162
            N+   R +E EKL + L    L +  I  DGHC+Y A+EDQL                 
Sbjct: 126 ENLSGARHLESEKLAQILAARELEIKQIPSDGHCMYGALEDQLREQDCALTVASLRRQTA 185

Query: 163 -----------AHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMI 211
                        L+          E F  YC ++ +TAAWGG+LELRAL+H L+  I I
Sbjct: 186 EYMQTHSDDFLPFLTNPSTGDMYTPEEFGKYCDDIVNTAAWGGQLELRALSHILQTPIEI 245

Query: 212 YSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 255
                P + +G+EY         + ++L Y RHA+GLGEHYNSV
Sbjct: 246 LQADAPPIIVGEEYPR-------NPLVLVYMRHAYGLGEHYNSV 282

Mus musculus (taxid: 10090)

>sp|Q6IE21|OTU6A_MOUSE OTU domain-containing protein 6A OS=Mus musculus GN=Otud6a PE=2 SV=1

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 143/285 (50%), Gaps = 46/285 (16%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           ++ RH +E  +LQ     LK +  K  K     ++KQ+  +ISRL A++ ++H +EL   
Sbjct: 11  VIRRHYREKRELQAHIQTLKASVPKNDKG----RRKQMLADISRLEAEMEQRHKQELEKF 66

Query: 61  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQS 120
           G      N  S++D++   +  + +  ++   +P K  KRR++RA QE   ++R+   Q+
Sbjct: 67  G-----ENPDSSVDSVTADLEKMNL--ENMPPRPPKAQKRRDRRAHQERRHQERMPAAQA 119

Query: 121 -NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQV--- 176
             + ++R  E+EK+   LG   L +  I  DGHC+YRA++DQL   S   ES + +    
Sbjct: 120 EQLAANRREEEEKVAAILGAKNLEMKTIPADGHCMYRAIQDQLV-FSVTIESLRYRTAYY 178

Query: 177 -----------------------ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYS 213
                                  E F  YC ++   A+WGG+LELRAL+H L+  I +  
Sbjct: 179 MRKHIDDFLPFFTEPEAGNFYTREDFLRYCDDIVHNASWGGQLELRALSHVLQTPIEVVQ 238

Query: 214 GSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 258
            + P + +G+EY+          + L Y  +A   GEHYNSV PI
Sbjct: 239 ANSPTIVIGEEYTR-------KPVTLVYLHYACDFGEHYNSVKPI 276

Mus musculus (taxid: 10090)

>sp|Q7L8S5|OTU6A_HUMAN OTU domain-containing protein 6A OS=Homo sapiens GN=OTUD6A PE=2 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 143/288 (49%), Gaps = 53/288 (18%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           +L RH++E  +LQ +   LK +  K  K     K+KQ+ ++++R+ A++ +KH +EL   
Sbjct: 11  ILRRHQRERQELQAQIRSLKNSVPKTDKT----KRKQLLQDVARMEAEMAQKHRQELEKF 66

Query: 61  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQR----IQ 116
                   + S+++++V+ +A + +     + +P + +K   KR + E+   +R     Q
Sbjct: 67  -------QDDSSIESVVEDLAKMNL-----ENRPPRSSKAHRKRERMESEERERQESIFQ 114

Query: 117 EEQS-NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAH----------- 164
            E S ++   +  E+EKL   LG  GL +  I  DGHC+YRA++DQL             
Sbjct: 115 AEMSEHLAGFKREEEEKLAAILGARGLEMKAIPADGHCMYRAIQDQLVFSVSVEMLRCRT 174

Query: 165 --------------LSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIM 210
                          S  E S     + F  YC  +  T AWGG+LELRAL+H L+  I 
Sbjct: 175 ASYMKKHVDEFLPFFSNPETSDSFGYDDFMIYCDNIVRTTAWGGQLELRALSHVLKTPIE 234

Query: 211 IYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 258
           +     P + +G+EY           IIL Y R+A+ LGEHYNSV P+
Sbjct: 235 VIQADSPTLIIGEEYVK-------KPIILVYLRYAYSLGEHYNSVTPL 275

Homo sapiens (taxid: 9606)

>sp|Q9UUK3|OTU2_SCHPO Ubiquitin thioesterase otu2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=otu2 PE=4 SV=1

 Score = 97.8 bits (242), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 147/302 (48%), Gaps = 55/302 (18%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           +LS+ R+E  +LQ+K T L+K   +G+K +++A    ++++IS++ A L +KHA E   L
Sbjct: 28  LLSKQREECKELQSKITNLRKQLKEGNKKQKRA----LQQKISQMEADLSQKHATERQKL 83

Query: 61  GYSSSNGNEKSN---LDNLVKAVAGVTVIS-------------QHDQAKPSKGTKRREKR 104
                  NE      L+ L++ +    + +             ++   +P K   R+++R
Sbjct: 84  DKGDEETNETQQEDLLNTLLQQMEDTKITTAEKSSVQSSLNTKENTPQQPKKSRNRQKER 143

Query: 105 AQQEAAREQRIQEE---QSNIVSD-RTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVED 160
            ++  A  +++ E+   +S  ++D +  E +K  K L   GL   DI  DG+CL+ ++  
Sbjct: 144 LERRKAEMKKMSEQAELESEKMADLKNEEKKKFSKILEEAGLVAVDIPADGNCLFASISH 203

Query: 161 QLAHLSGGEESAQS-----------QVERFE---------------NYCKEVESTAAWGG 194
           QL +    + ++Q+             E+FE               +YC E+ + + WG 
Sbjct: 204 QLNYHHNVKLNSQALRNKSADYVLKHCEQFEGFLLDEESGEVLPVSDYCNEIRNNSKWGS 263

Query: 195 ELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNS 254
           ++E++AL + L   + +Y+   P ++      N  +      + ++Y++H FGLG HYNS
Sbjct: 264 DIEIQALANSLEVPVHVYNTEGPVLKF-----NPSTVKFEKPLCIAYYQHLFGLGAHYNS 318

Query: 255 VI 256
           ++
Sbjct: 319 LL 320

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38747|OTU2_YEAST OTU domain-containing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OTU2 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 133/303 (43%), Gaps = 62/303 (20%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           +L+RHRKE   LQNK T +KK A        K+K+K+V  +   L  KL+ K   E+   
Sbjct: 16  ILARHRKENKDLQNKITGMKKQAT-------KSKRKEVNSKCLDLQDKLKTKQENEIRDW 68

Query: 61  GYSSSNGNEKSNLDNLV--KAVAGVTV-------ISQHDQAKPSKGTKRREKRAQQEAAR 111
             +++   +    D +   K +  +++        +   Q +    TK+R  R ++  A+
Sbjct: 69  KIANNEVFDAEQEDEVTPEKLLEQLSISRDEKEQQNVPVQQQQQGQTKKRRNRQKERLAK 128

Query: 112 EQ----RIQEEQSNIVSD----RTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLA 163
                 +++EE +   S     + +E E +++      L   DI+PDGHCL+ ++ DQL 
Sbjct: 129 RDAAIAKMKEEAALEASKQPDLKKMEQESIDQLCELKKLKQFDIQPDGHCLFASILDQLK 188

Query: 164 HLSGGEESAQS-------------------------------QVERFENYCKEVESTAAW 192
                ++  Q                                +++  + Y KE+E TA W
Sbjct: 189 LRHDPKKLDQDMDVMKLRWLSCNYVQEHRDDFIPYLFDEETMKMKDIDEYTKEMEHTAQW 248

Query: 193 GGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHY 252
           GGE+E+ AL+H     I I     P     + Y+  G       + L Y++H++ LGEHY
Sbjct: 249 GGEIEILALSHVFDCPISILMSGRP----IQVYNECG---KNPELKLVYYKHSYALGEHY 301

Query: 253 NSV 255
           NS+
Sbjct: 302 NSL 304

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
449520871	325	PREDICTED: LOW QUALITY PROTEIN: OTU doma	0.988	0.784	0.682	1e-106
388521917	326	unknown [Medicago truncatula]	1.0	0.791	0.670	1e-105
449436806	319	PREDICTED: OTU domain-containing protein	0.988	0.799	0.679	1e-105
224131236	326	predicted protein [Populus trichocarpa]	0.996	0.788	0.703	1e-104
357511169	335	OTU domain-containing protein 6B [Medica	1.0	0.770	0.666	1e-104
255571935	325	OTU domain-containing protein 6B, putati	0.996	0.790	0.696	1e-103
356505520	324	PREDICTED: LOW QUALITY PROTEIN: OTU doma	0.992	0.790	0.681	1e-100
363807892	324	uncharacterized protein LOC100780620 [Gl	0.996	0.793	0.662	2e-98
225436773	325	PREDICTED: OTU domain-containing protein	0.996	0.790	0.705	9e-98
319428666	357	OTU-like cysteine protease [Phaseolus vu	0.976	0.705	0.666	2e-97

>gi|449520871|ref|XP_004167456.1| PREDICTED: LOW QUALITY PROTEIN: OTU domain-containing protein 6B-like [Cucumis sativus]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/293 (68%), Positives = 230/293 (78%), Gaps = 38/293 (12%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           MLSRHRKEISQLQNKE ELKKAAA+GSKAEQK K KQVEEEIS+LS KL++K A+ELASL
Sbjct: 36  MLSRHRKEISQLQNKEIELKKAAARGSKAEQKVKXKQVEEEISQLSVKLKKKQAEELASL 95

Query: 61  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQS 120
           G+S+SNGNEK N+DNLVKA+AGV++ +Q D +KPSK T+R+EKRAQQEA R++RI+EEQS
Sbjct: 96  GFSNSNGNEK-NIDNLVKAIAGVSMAAQSDHSKPSKSTRRKEKRAQQEAERDRRIEEEQS 154

Query: 121 NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------- 169
           NIVSDR +E+E LEKKL PLGLTVN+IKPDGHCLYRAVE+QLA+LSGG            
Sbjct: 155 NIVSDRMIENEHLEKKLEPLGLTVNEIKPDGHCLYRAVENQLAYLSGGSSPYNYQQLREM 214

Query: 170 ------------------------ESAQSQVERFENYCKEVESTAAWGGELELRALTHCL 205
                                    S  S  ERFENYCKEVESTAAWGG+LEL ALTHCL
Sbjct: 215 VAAYMRDHSTDYMPFFLSDNGVEGNSNSSLAERFENYCKEVESTAAWGGQLELGALTHCL 274

Query: 206 RKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 258
           RKHIMI+SGSFPDVEMGKEY + G  +  SSI LSYH+HAFGLGEHYNSV+P+
Sbjct: 275 RKHIMIFSGSFPDVEMGKEYKSEGVIN--SSIRLSYHKHAFGLGEHYNSVVPV 325

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521917|gb|AFK49020.1| unknown [Medicago truncatula]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/294 (67%), Positives = 230/294 (78%), Gaps = 36/294 (12%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           +L+RHRKEISQLQ KE E+KK AA+GSKAEQKAKK+QVEEE+S+LSAKL+EK AKEL++L
Sbjct: 31  ILARHRKEISQLQKKEVEMKKQAARGSKAEQKAKKRQVEEEVSQLSAKLKEKQAKELSAL 90

Query: 61  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQS 120
           GYSS  GNEKSN+DNLVKA+AGV+V SQ +  K SK  +RR+KRAQQEA REQRIQ EQ+
Sbjct: 91  GYSSGIGNEKSNMDNLVKAIAGVSVSSQPENTKVSKAKQRRDKRAQQEAEREQRIQAEQN 150

Query: 121 NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------- 169
           +I+SDRTVE+EKLE+KL PLGLTV +IKPDGHCLYRAVE+QLAHL GG+           
Sbjct: 151 DIISDRTVENEKLERKLKPLGLTVCEIKPDGHCLYRAVENQLAHLFGGKSPYTFQQLREM 210

Query: 170 ------------------------ESAQSQVERFENYCKEVESTAAWGGELELRALTHCL 205
                                   +S +S  ++FENYCKEVESTA WGG+LEL ALTHCL
Sbjct: 211 AAAYMMKHTSDFLPFCLSENLIEGDSDESIAQKFENYCKEVESTAIWGGQLELGALTHCL 270

Query: 206 RKHIMIYSGSFPDVEMGKEY-SNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 258
           +KHIMI+SGSFPDVEMGKEY S  G  SSGSSI+LSYH HAFGLGEHYNSV+PI
Sbjct: 271 KKHIMIFSGSFPDVEMGKEYKSADGIGSSGSSIMLSYHMHAFGLGEHYNSVVPI 324

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436806|ref|XP_004136183.1| PREDICTED: OTU domain-containing protein 6B-like [Cucumis sativus]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/293 (67%), Positives = 228/293 (77%), Gaps = 38/293 (12%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           MLS  RKEISQLQNKE ELKKAAA+GSKAEQK KKKQVEEEIS+LS KL++K A+ELASL
Sbjct: 30  MLSLCRKEISQLQNKEIELKKAAARGSKAEQKVKKKQVEEEISQLSVKLKKKQAEELASL 89

Query: 61  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQS 120
           G+S+SNGNEK N+DNLVKA+AGV++ +Q D +KPSK T+R+EKRAQQEA R++RI+EEQS
Sbjct: 90  GFSNSNGNEK-NIDNLVKAIAGVSMAAQSDHSKPSKSTRRKEKRAQQEAERDRRIEEEQS 148

Query: 121 NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------- 169
           NIVSDR +E+E LEKKL PLGLTVN+IKPDGHCLYRAVE+QLA+LSGG            
Sbjct: 149 NIVSDRMIENEHLEKKLEPLGLTVNEIKPDGHCLYRAVENQLAYLSGGSSPYNYQQLREM 208

Query: 170 ------------------------ESAQSQVERFENYCKEVESTAAWGGELELRALTHCL 205
                                    S  S  ERFENYCKEVESTAAWGG+LEL ALTHCL
Sbjct: 209 VAAYMRDHSTDYMPFFLSDNGVEGNSNSSLAERFENYCKEVESTAAWGGQLELGALTHCL 268

Query: 206 RKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 258
           RKHIMI+SGSFPDVEMGKEY + G     SSI LSYH+HAFGLGEHYNSV+P+
Sbjct: 269 RKHIMIFSGSFPDVEMGKEYKSEG--VINSSIRLSYHKHAFGLGEHYNSVVPV 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131236|ref|XP_002321034.1| predicted protein [Populus trichocarpa] gi|222861807|gb|EEE99349.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/293 (70%), Positives = 232/293 (79%), Gaps = 36/293 (12%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           MLSRHRKEI QLQNKE E+KKAAAKGSKAEQKAKKK VEEE+S+LSAKL+EKHA+ELASL
Sbjct: 30  MLSRHRKEIRQLQNKEIEMKKAAAKGSKAEQKAKKKLVEEEVSQLSAKLKEKHAEELASL 89

Query: 61  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQS 120
           GY+S+NGNE SNLDNLVKAVAGV+V +Q + +KPSK  KRR KRAQQEA REQRIQEEQS
Sbjct: 90  GYNSTNGNESSNLDNLVKAVAGVSVTNQPEHSKPSKSAKRRGKRAQQEAEREQRIQEEQS 149

Query: 121 NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGG------------ 168
           N+ SDR +EDEKLE+KL PLGLT+N+IKPDGHCLYRAVEDQLA LSGG            
Sbjct: 150 NLESDRMIEDEKLERKLEPLGLTINEIKPDGHCLYRAVEDQLALLSGGSAPYDYQELRKL 209

Query: 169 -----------------------EESAQSQVERFENYCKEVESTAAWGGELELRALTHCL 205
                                  E S  S  +RFENYCKEVEST AWGG+LEL ALTHCL
Sbjct: 210 VAAYMRENSPDFLPFFLSDTITEEHSDHSLSDRFENYCKEVESTTAWGGQLELGALTHCL 269

Query: 206 RKHIMIYSGSFPDVEMGKEY-SNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 257
           R+HI I+SGSFPDVEMGKEY S+GG+ SS +SI+LSYH+HAFGLGEHYNSV+P
Sbjct: 270 RRHIKIFSGSFPDVEMGKEYKSDGGAGSSNASIMLSYHKHAFGLGEHYNSVVP 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511169|ref|XP_003625873.1| OTU domain-containing protein 6B [Medicago truncatula] gi|355500888|gb|AES82091.1| OTU domain-containing protein 6B [Medicago truncatula]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/294 (66%), Positives = 229/294 (77%), Gaps = 36/294 (12%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           +L+RHRKEISQLQ KE E+KK AA+GSKAEQKAKK+QVEEE+S+LSAKL+EK AKEL++L
Sbjct: 40  ILARHRKEISQLQKKEVEMKKQAARGSKAEQKAKKRQVEEEVSQLSAKLKEKQAKELSAL 99

Query: 61  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQS 120
           GYSS  GNEKSN+DNLVKA+AGV+V SQ +  K SK  +RR+KRAQQEA REQRIQ EQ+
Sbjct: 100 GYSSGIGNEKSNMDNLVKAIAGVSVSSQPENTKVSKAKQRRDKRAQQEAEREQRIQAEQN 159

Query: 121 NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------- 169
           + +SDRTVE+EKLE+KL PLGLTV +IKPDGHCLYRAVE+QLAHL GG+           
Sbjct: 160 DNISDRTVENEKLERKLKPLGLTVCEIKPDGHCLYRAVENQLAHLFGGKSPYTFQQLREM 219

Query: 170 ------------------------ESAQSQVERFENYCKEVESTAAWGGELELRALTHCL 205
                                   +S +S  ++FENYCKEVESTA WGG+LEL ALTHCL
Sbjct: 220 AAAYMRKHTSDFLPFCLSENLIEGDSDESIAQKFENYCKEVESTAIWGGQLELGALTHCL 279

Query: 206 RKHIMIYSGSFPDVEMGKEY-SNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 258
           +KHIMI+SGSFPDVEMGKEY S  G  SSGSSI+LSYH HAFGLGEHYNSV+PI
Sbjct: 280 KKHIMIFSGSFPDVEMGKEYKSADGIGSSGSSIMLSYHMHAFGLGEHYNSVVPI 333

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571935|ref|XP_002526909.1| OTU domain-containing protein 6B, putative [Ricinus communis] gi|223533728|gb|EEF35462.1| OTU domain-containing protein 6B, putative [Ricinus communis]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/293 (69%), Positives = 231/293 (78%), Gaps = 36/293 (12%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           MLSRHRKEI+QLQNKE ELKKAAAKGSKAEQK+KKKQVEE+IS+LSAKL+EKHA+ELASL
Sbjct: 29  MLSRHRKEIAQLQNKEIELKKAAAKGSKAEQKSKKKQVEEQISQLSAKLKEKHAEELASL 88

Query: 61  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQS 120
           GY+S  GNEKSNLDNLVKA+AGV+V +Q + AK SKG KRR KRAQQEA REQRIQEEQS
Sbjct: 89  GYNSITGNEKSNLDNLVKAIAGVSVTNQPELAKVSKGAKRRGKRAQQEAEREQRIQEEQS 148

Query: 121 NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------- 169
           N+VSDR +E+EKL+ KL PLGLTVNDIKPDGHCLYRA+EDQL+ LSGG            
Sbjct: 149 NLVSDRLIENEKLKGKLEPLGLTVNDIKPDGHCLYRAIEDQLSVLSGGSSPYTYQDLRKM 208

Query: 170 ------------------------ESAQSQVERFENYCKEVESTAAWGGELELRALTHCL 205
                                   +S  S  +RFENYCKEVEST+AWGG+LEL ALTHCL
Sbjct: 209 VAAYMREHASDFLPFFLSDNTIEGDSDDSLADRFENYCKEVESTSAWGGQLELGALTHCL 268

Query: 206 RKHIMIYSGSFPDVEMGKEYSN-GGSDSSGSSIILSYHRHAFGLGEHYNSVIP 257
            KHI I+SGSFPDVEMGKEY N  G+ SS +SI+LSYH+HAFGLGEHYNSV+P
Sbjct: 269 TKHIKIFSGSFPDVEMGKEYKNDDGAGSSNTSILLSYHKHAFGLGEHYNSVVP 321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505520|ref|XP_003521538.1| PREDICTED: LOW QUALITY PROTEIN: OTU domain-containing protein 6B-like [Glycine max]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/292 (68%), Positives = 229/292 (78%), Gaps = 36/292 (12%)

Query: 2   LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLG 61
           LSRHRKEI QLQ KE E+KKAAA+GSKAEQKAKKKQVEEE+S+LSAKL+E  AKELA+LG
Sbjct: 32  LSRHRKEILQLQKKEVEMKKAAARGSKAEQKAKKKQVEEEVSQLSAKLKENQAKELAALG 91

Query: 62  YSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSN 121
           Y+SSNGNEKSNLD+LVKA+AGV+V SQ +  K SK  +RREKRAQQEA REQRIQ EQS+
Sbjct: 92  YNSSNGNEKSNLDSLVKAIAGVSVASQPEHTKVSKAKQRREKRAQQEAEREQRIQSEQSD 151

Query: 122 IVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGG------------- 168
           I+SDR +E+EKLEKKL PLGLTV +IKPDGHCLYRAVEDQLA LSGG             
Sbjct: 152 IISDRMIENEKLEKKLKPLGLTVCEIKPDGHCLYRAVEDQLALLSGGRSPYTYQDLREMV 211

Query: 169 ----------------------EESAQSQVERFENYCKEVESTAAWGGELELRALTHCLR 206
                                 ++S +S  ++FENYCKEVESTA WGG+LEL ALTHCL+
Sbjct: 212 AAYMRNHTSDFLPFFLSENLIEDDSDESPAQKFENYCKEVESTATWGGQLELGALTHCLK 271

Query: 207 KHIMIYSGSFPDVEMGKEY-SNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 257
           KHIMI+SGSFPDVEMGKEY S+GG+  S  SI+LSYH+HAFGLGEHYNSV+P
Sbjct: 272 KHIMIFSGSFPDVEMGKEYKSDGGAGMSNLSIMLSYHKHAFGLGEHYNSVVP 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807892|ref|NP_001242191.1| uncharacterized protein LOC100780620 [Glycine max] gi|255641250|gb|ACU20902.1| unknown [Glycine max]

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 194/293 (66%), Positives = 226/293 (77%), Gaps = 36/293 (12%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           +LSRHRKEI QLQ KE E+KKA A+GSKAEQKAKKKQVEEE+ +LSAKL+E HAKEL +L
Sbjct: 31  ILSRHRKEILQLQKKEVEMKKATARGSKAEQKAKKKQVEEEVCQLSAKLKENHAKELTAL 90

Query: 61  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQS 120
           GY S NGNEKSNLD+LVKA+AGV+V SQ +  K SK  +RR+KRAQQEA REQRIQ EQS
Sbjct: 91  GYISGNGNEKSNLDSLVKAIAGVSVTSQPEHTKVSKAKQRRDKRAQQEAEREQRIQAEQS 150

Query: 121 NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGG------------ 168
           +I+SDR +E+EKLEKKL PLGLTV +IKPDGHCLYRA+EDQLA LSGG            
Sbjct: 151 DIISDRVIENEKLEKKLKPLGLTVCEIKPDGHCLYRAIEDQLAILSGGRSPYTYQELREM 210

Query: 169 -----------------------EESAQSQVERFENYCKEVESTAAWGGELELRALTHCL 205
                                  ++S +S  ++F NYCKEVESTA WGG+LEL ALTHCL
Sbjct: 211 VAAYMRNHTSDFLPFFLSENLIEDDSNESFAQKFGNYCKEVESTATWGGQLELGALTHCL 270

Query: 206 RKHIMIYSGSFPDVEMGKEY-SNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 257
           +KHIMI+SGSFPDVEMGKEY S+GG+  S SSI+LSYH+HAFGLGEHYNSV+P
Sbjct: 271 KKHIMIFSGSFPDVEMGKEYKSDGGTGLSNSSIMLSYHKHAFGLGEHYNSVVP 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436773|ref|XP_002267732.1| PREDICTED: OTU domain-containing protein 6B isoform 2 [Vitis vinifera]

 Score =  362 bits (929), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 206/292 (70%), Positives = 230/292 (78%), Gaps = 35/292 (11%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           MLSRHRKEISQLQNKE  +KKAAAKGSKAEQKAKKKQVE+EIS+LS+ L+EK A ELAS+
Sbjct: 30  MLSRHRKEISQLQNKEAAMKKAAAKGSKAEQKAKKKQVEDEISQLSSDLKEKQAAELASI 89

Query: 61  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQS 120
           GYSS +G EKSNLDNLVKA+AGV+V SQ + ++PSK  KRREKRAQQEAAREQRIQEEQS
Sbjct: 90  GYSSGSGKEKSNLDNLVKAIAGVSVTSQAEHSRPSKSAKRREKRAQQEAAREQRIQEEQS 149

Query: 121 NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------- 169
           NIVSDR +E+E LEKKL PLGL VNDIKPDGHCLYRAVEDQLA LSGG            
Sbjct: 150 NIVSDRMIENEILEKKLEPLGLAVNDIKPDGHCLYRAVEDQLALLSGGSSPYTYQELREM 209

Query: 170 ----------------------ESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRK 207
                                 +S  S  ERFENYCKE+ESTAAWGG+LEL ALTHCL+K
Sbjct: 210 VAAYMRKHASDFLPFFLSETEGDSDISLAERFENYCKEIESTAAWGGQLELGALTHCLKK 269

Query: 208 HIMIYSGSFPDVEMGKEYSN--GGSDSSGSSIILSYHRHAFGLGEHYNSVIP 257
           HIMI+SGSFPDVEMGKEY +  G +D+S  SI+LSYH+HAFGLGEHYNSVIP
Sbjct: 270 HIMIFSGSFPDVEMGKEYKSDVGRTDTSNQSIMLSYHKHAFGLGEHYNSVIP 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319428666|gb|ADV56689.1| OTU-like cysteine protease [Phaseolus vulgaris]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/288 (66%), Positives = 224/288 (77%), Gaps = 36/288 (12%)

Query: 6   RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSS 65
           +KEISQLQ KE E+KKAAA+GSKAEQKAKKKQVEEE+S+LS KL+EKHAKELA+ GYSS 
Sbjct: 69  KKEISQLQKKEVEMKKAAARGSKAEQKAKKKQVEEEVSQLSTKLKEKHAKELAAFGYSSG 128

Query: 66  NGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSD 125
           NGNEKSNLD LVKA+AGV+V SQ +  K SK  +RR+KRAQQEA REQRIQ EQ++I+SD
Sbjct: 129 NGNEKSNLDTLVKAIAGVSVASQPEHTKVSKAKQRRDKRAQQEAEREQRIQAEQTDIISD 188

Query: 126 RTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGG----------------- 168
           R +E+EKLE+KL PLG TV +IKPDGHCLYRAVEDQLA LSGG                 
Sbjct: 189 RMIENEKLERKLKPLGFTVCEIKPDGHCLYRAVEDQLAVLSGGGSPYTYQELREMVAAYM 248

Query: 169 ------------------EESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIM 210
                             ++S +S  ++FENYCKEVESTA WGG+LEL ALTHCL+KHIM
Sbjct: 249 RKHTSDFLPFFLSENLIEDDSDESLAQKFENYCKEVESTAIWGGQLELGALTHCLKKHIM 308

Query: 211 IYSGSFPDVEMGKEY-SNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 257
           I+SGSFPDVEMGKEY S+GG+  S SSI+LSYH+HAFGLGEHYNSV+P
Sbjct: 309 IFSGSFPDVEMGKEYKSDGGTGLSNSSIMLSYHKHAFGLGEHYNSVVP 356

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
TAIR|locus:2099172	332	AT3G62940 [Arabidopsis thalian	0.329	0.256	0.685	4.2e-61
ZFIN|ZDB-GENE-040426-974	293	otud6b "OTU domain containing	0.360	0.317	0.41	2.4e-23
MGI|MGI:1919451	294	Otud6b "OTU domain containing	0.348	0.306	0.422	2.5e-22
MGI|MGI:3644685	290	Otud6a "OTU domain containing	0.290	0.258	0.402	4.3e-19
DICTYBASE|DDB_G0279375	340	DDB_G0279375 "OTU domain conta	0.317	0.241	0.406	2e-18
UNIPROTKB|G4NEZ8	304	MGG_11505 "Uncharacterized pro	0.294	0.25	0.341	2.2e-14
ASPGD|ASPL0000026973	340	AN5638 [Emericella nidulans (t	0.426	0.323	0.333	4.4e-13
SGD|S000001005	307	OTU2 "Protein of unknown funct	0.286	0.241	0.345	1.5e-12
CGD|CAL0002605	323	orf19.1959 [Candida albicans (	0.286	0.229	0.296	5e-09
POMBASE|SPAC1952.03	324	otu2 "ubiquitin specific cyste	0.313	0.25	0.284	9.1e-09

TAIR|locus:2099172 AT3G62940 [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
 Identities = 61/89 (68%), Positives = 70/89 (78%)

Query:   168 GEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXX 227
             G+ ++ S  ERFE YC+EVESTAAWG +LEL ALTHCLRKHI +YSGSFPDVEMGKEY  
Sbjct:   241 GDSNSGSAEERFEKYCREVESTAAWGSQLELGALTHCLRKHIKVYSGSFPDVEMGKEYRS 300

Query:   228 XXXXXXXXXIILSYHRHAFGLGEHYNSVI 256
                      ++LSYHRHAFGLGEHYNSV+
Sbjct:   301 GDDSS----LMLSYHRHAFGLGEHYNSVV 325

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

ZFIN|ZDB-GENE-040426-974 otud6b "OTU domain containing 6B" [Danio rerio (taxid:7955)]

 Score = 189 (71.6 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
 Identities = 41/100 (41%), Positives = 55/100 (55%)

Query:   159 EDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD 218
             +D +  L+          E FE YC +V  TAAWGG+LEL+AL+  L+  I +     P 
Sbjct:   192 DDFMPFLTNPNTGDMYTAEEFEKYCSDVADTAAWGGQLELKALSQVLQLPIEVIQADSPC 251

Query:   219 VEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSVIPI 258
             + +G+EY           I L Y RHA+GLGEHYNSV P+
Sbjct:   252 ITIGEEYDKPK-------ITLIYMRHAYGLGEHYNSVEPL 284

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1919451 Otud6b "OTU domain containing 6B" [Mus musculus (taxid:10090)]

 Score = 188 (71.2 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
 Identities = 41/97 (42%), Positives = 55/97 (56%)

Query:   159 EDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD 218
             +D L  L+          E F  YC ++ +TAAWGG+LELRAL+H L+  I I     P 
Sbjct:   193 DDFLPFLTNPSTGDMYTPEEFGKYCDDIVNTAAWGGQLELRALSHILQTPIEILQADAPP 252

Query:   219 VEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSV 255
             + +G+EY           ++L Y RHA+GLGEHYNSV
Sbjct:   253 IIVGEEYPRNP-------LVLVYMRHAYGLGEHYNSV 282

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:3644685 Otud6a "OTU domain containing 6A" [Mus musculus (taxid:10090)]

 Score = 153 (58.9 bits), Expect = 4.3e-19, Sum P(2) = 4.3e-19
 Identities = 33/82 (40%), Positives = 46/82 (56%)

Query:   177 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXX 236
             E F  YC ++   A+WGG+LELRAL+H L+  I +   + P + +G+EY           
Sbjct:   202 EDFLRYCDDIVHNASWGGQLELRALSHVLQTPIEVVQANSPTIVIGEEYTRKP------- 254

Query:   237 IILSYHRHAFGLGEHYNSVIPI 258
             + L Y  +A   GEHYNSV PI
Sbjct:   255 VTLVYLHYACDFGEHYNSVKPI 276

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279375 DDB_G0279375 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 170 (64.9 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
 Identities = 37/91 (40%), Positives = 54/91 (59%)

Query:   169 EESAQSQVERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXX 227
             E+   +  +  + YC+E V +   WGG +EL+AL+  L+K I I++    D+ +G+E+  
Sbjct:   256 EDEYSTAEDPIQEYCQEQVLTIGKWGGHIELKALSQSLKKVITIFNAYSNDIIIGEEFTN 315

Query:   228 XXXXXXXXXIILSYHRHAFGLGEHYNSVIPI 258
                      I L+YHRHAF LGEHYNS IPI
Sbjct:   316 P--------IYLTYHRHAFTLGEHYNSAIPI 338

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G4NEZ8 MGG_11505 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 124 (48.7 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
 Identities = 27/79 (34%), Positives = 40/79 (50%)

Query:   177 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXX 236
             E  ++Y +++  TA WGG +EL AL       + + +     V   KE            
Sbjct:   225 EPLDDYVRKMRDTAEWGGHMELLALASTYNVEVRVIADGRTAVVQPKE---PKEDEPARQ 281

Query:   237 IILSYHRHAFGLGEHYNSV 255
             + L+Y+RH FGLGEHYNS+
Sbjct:   282 VWLAYYRHGFGLGEHYNSL 300

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

ASPGD|ASPL0000026973 AN5638 [Emericella nidulans (taxid:162425)]

 Score = 142 (55.0 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
 Identities = 38/114 (33%), Positives = 57/114 (50%)

Query:   143 TVNDIKPDGHCLYRAVE-DQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRAL 201
             TV   K DG+   RAV  D +A     +E      E  E+Y ++++ TA WGG+LEL+A+
Sbjct:   226 TVASPKHDGYRAVRAVTADFIAEHK--DEFEPFMEEPLESYTRKIKLTAEWGGQLELQAI 283

Query:   202 THCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSV 255
                    I +  G    +E  +             I L+Y+RH +GLGEHYN++
Sbjct:   284 ARAYGVDINVVQGD-GRIEKIEAGDVEEEERAKRVIWLAYYRHTYGLGEHYNAL 336

GO:0005840 "ribosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IEA

SGD|S000001005 OTU2 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 122 (48.0 bits), Expect = 1.5e-12, Sum P(3) = 1.5e-12
 Identities = 28/81 (34%), Positives = 45/81 (55%)

Query:   175 QVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXX 234
             +++  + Y KE+E TA WGGE+E+ AL+H     I I     P +++  E          
Sbjct:   231 KMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILMSGRP-IQVYNECGKNPE---- 285

Query:   235 XXIILSYHRHAFGLGEHYNSV 255
               + L Y++H++ LGEHYNS+
Sbjct:   286 --LKLVYYKHSYALGEHYNSL 304

GO:0008150 "biological_process" evidence=ND

GO:0005840 "ribosome" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

CGD|CAL0002605 orf19.1959 [Candida albicans (taxid:5476)]

 Score = 112 (44.5 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
 Identities = 24/81 (29%), Positives = 42/81 (51%)

Query:   175 QVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXX 234
             ++   ++Y  E+ +TA WG ++E+ AL+      I IY      + + +           
Sbjct:   247 ELRDLDDYINELTTTAMWGSDMEILALSKVFNCPISIYMAGASTLTINEH-------GQL 299

Query:   235 XXIILSYHRHAFGLGEHYNSV 255
               + L Y++H+FGLGEHYNS+
Sbjct:   300 PELKLGYYKHSFGLGEHYNSL 320

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IEA

POMBASE|SPAC1952.03 otu2 "ubiquitin specific cysteine protease, OTU family, Otu2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 124 (48.7 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
 Identities = 25/88 (28%), Positives = 47/88 (53%)

Query:   169 EESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXX 228
             EES +  V    +YC E+ + + WG ++E++AL + L   + +Y+   P ++        
Sbjct:   240 EESGE--VLPVSDYCNEIRNNSKWGSDIEIQALANSLEVPVHVYNTEGPVLKFNPS---- 293

Query:   229 XXXXXXXXIILSYHRHAFGLGEHYNSVI 256
                     + ++Y++H FGLG HYNS++
Sbjct:   294 -TVKFEKPLCIAYYQHLFGLGAHYNSLL 320

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8N6M0	OTU6B_HUMAN	No assigned EC number	0.3558	0.9108	0.8020	yes	no
Q8K2H2	OTU6B_MOUSE	No assigned EC number	0.3309	0.9263	0.8129	yes	no
Q7ZV00	OTU6B_DANRE	No assigned EC number	0.3620	0.9147	0.8054	yes	no
Q5M8L0	OTU6B_XENTR	No assigned EC number	0.3356	0.9224	0.8095	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XIV0731	hypothetical protein (327 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•					0.448

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	258
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	2e-19
COG5539	306	COG5539, COG5539, Predicted cysteine protease (OTU	1e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 81.0 bits (200), Expect = 2e-19
 Identities = 36/125 (28%), Positives = 50/125 (40%), Gaps = 22/125 (17%)

Query: 148 KPDGHCLYRAVEDQLAHLSGGEESA-----------QSQVERFENYC--------KEVES 188
             DG+CL+ AV DQL   +G +E             +   E FE +         K +  
Sbjct: 1   PGDGNCLFHAVSDQLG-DAGRQELHDELREAVVEYLRENREDFEKFLEEDENEYYKWISK 59

Query: 189 TAAWGGELELRALTHCLRKHIMIYSGSFPDVEMG-KEYSNGGSDSSGSSIILSYHRHAFG 247
             AWGG +E+ AL H LR  I++Y      + +  K Y      +    I LSY      
Sbjct: 60  DGAWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRLSYLGLE-Y 118

Query: 248 LGEHY 252
            G HY
Sbjct: 119 TGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

>gnl|CDD|227826 COG5539, COG5539, Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 50/301 (16%), Positives = 99/301 (32%), Gaps = 61/301 (20%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKEL--A 58
           +  + R E+  LQ K T + K    G         +++  +   LS  L +K   E+  A
Sbjct: 17  LTEKQRFELKDLQTKITRIMKQLTFGR------PPQRLNGKCLDLSYALSQKDEVEIEKA 70

Query: 59  SLGYSSSNGNEKSNLDNLVKAVAGVTVISQHD----------QAKPSKGTKRREKRAQQE 108
               + +N  ++ +    ++ +  + + S             +  P +    R  +A++ 
Sbjct: 71  PKLRAETNEADQEDSLTPLQNIPELGISSFEKSVSQQSINVLEDMPGQDDNSRLFQAERY 130

Query: 109 AAREQRI---QEEQSNIVSDRTVE--DEKLEK--KLGPLGLTVNDIKPDGHCLYRAVEDQ 161
           + R+  +   +E  S  V           LE         +   D + DG      + DQ
Sbjct: 131 SLRDASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQ 190

Query: 162 LAHLSGGEESAQSQVERFEN----------------------------YCKEVESTAAWG 193
           L       +  +   +R+ +                            Y  EV   A+ G
Sbjct: 191 LPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEVLFDASDG 250

Query: 194 GELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYN 253
             +E++ L   L+      + + P +    + +  G+   G      Y+ HA   G HYN
Sbjct: 251 ITIEIQQLASLLKNPHYYTNTASPSI----KCNICGTGFVGE---KDYYAHALATG-HYN 302

Query: 254 S 254
            
Sbjct: 303 F 303

Length = 306

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 32/195 (16%), Positives = 72/195 (36%), Gaps = 8/195 (4%)

Query: 2   LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKK--QVEEEISRLSAKLREKHAKELAS 59
           L    KEI +L+++  EL++   +  +   + K++  ++E EIS L  +L E   +    
Sbjct: 262 LEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEEL 321

Query: 60  LGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKP---SKGTKRREKRAQQEAAREQRIQ 116
                    +   L   ++     T++ + +Q          +  EK +      E+  +
Sbjct: 322 EERLEELKEKIEALKEELEERE--TLLEELEQLLAELEEAKEELEEKLSALLEELEELFE 379

Query: 117 EEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQV 176
             +  + ++   E  ++  +L  L   +  ++     L   +ED    L   E   +   
Sbjct: 380 ALREEL-AELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQ 438

Query: 177 ERFENYCKEVESTAA 191
              E   +E+E    
Sbjct: 439 TELEELNEELEELEE 453

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	100.0
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	99.96
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.85
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.6
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.36
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.16
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	99.12
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	97.82
PF05415	104	Peptidase_C36: Beet necrotic yellow vein furovirus	87.53

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-64  Score=453.12  Aligned_cols=248  Identities=43%  Similarity=0.731  Sum_probs=209.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CCCcchhhhh
Q 025074            1 MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGN--EKSNLDNLVK   78 (258)
Q Consensus         1 l~~rHrkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh~~El~~~~~~~~~~~--~~~~~~~~~~   78 (258)
                      |++|||+|+|+||++||+|||+++||+|    ++||+++.+|++||.+|++||..||..+...+..+.  .+..+++++.
T Consensus        17 iLaRHr~E~keLq~ki~~mKk~a~k~~k----~~rK~~~~~~~~le~el~qkH~kEL~~~~~~~~~e~~~~e~~~~s~l~   92 (302)
T KOG2606|consen   17 ILARHRRERKELQAKITSMKKAAPKGNK----KKRKELTEDIAKLEKELSQKHKKELEKLKLINESEVTPKENLIESVLS   92 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccH----HHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCccccCccccchhhhhc
Confidence            5899999999999999999999999996    899999999999999999999999999986432111  1222455555


Q ss_pred             hccccccccccCCCCCchhhhhHHHHHHHHHHHH-HHHHHHH--hcccCCchhHHHHHHHHhccCCceEEeecCCCchHH
Q 025074           79 AVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE-QRIQEEQ--SNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLY  155 (258)
Q Consensus        79 ~~~~~~~~~~~~~~~~~K~~~Rr~~r~~~~~~~~-~~i~~e~--~~~~~~r~~E~~~l~~~L~~~gL~i~~I~~DGnCLF  155 (258)
                      .++.+...+.++.|+.||++|||.+++..++.++ ++|.+++  ++.++.+.+|.+.+.+.|...||.+++||+||||||
T Consensus        93 ~~a~~~~~~~ee~P~~sKa~k~r~k~r~e~r~~e~~~~~e~~~~~~~~~~k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY  172 (302)
T KOG2606|consen   93 PIANMSLENKEETPRQSKARKRREKKRKEERKREAEKIAEEESLSNQADAKSMEKEKLAQILEERGLKMFDIPADGHCLY  172 (302)
T ss_pred             ccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHhccCccccCCCCchhhH
Confidence            5666666555555667888777776655555444 7887644  488999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCC-C------------------Ccchhh----------hHhHHHHHHHhhcCCccCcHHHHHHHHHhhc
Q 025074          156 RAVEDQLAHLSGG-E------------------ESAQSQ----------VERFENYCKEVESTAAWGGELELRALTHCLR  206 (258)
Q Consensus       156 rAIa~QL~~~~~~-~------------------~f~~~~----------~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~  206 (258)
                      +||+|||..++.. .                  +|-+|+          ..+|+.||+.|++|+.|||+|||.|||++|+
T Consensus       173 ~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~  252 (302)
T KOG2606|consen  173 AAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELKALSHVLQ  252 (302)
T ss_pred             HHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHHHHHHHhhc
Confidence            9999999987654 1                  255553          3579999999999999999999999999999


Q ss_pred             ccEEEEeCCCCceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 025074          207 KHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  258 (258)
Q Consensus       207 ~~I~V~~~~~~~~~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~p~  258 (258)
                      +||+||+.++|++.||++|..      .+||.|+||+|+||||+|||||.|.
T Consensus       253 ~PI~Vy~~~~p~~~~geey~k------d~pL~lvY~rH~y~LGeHYNS~~~~  298 (302)
T KOG2606|consen  253 VPIEVYQADGPILEYGEEYGK------DKPLILVYHRHAYGLGEHYNSVTPL  298 (302)
T ss_pred             cCeEEeecCCCceeechhhCC------CCCeeeehHHhHHHHHhhhcccccc
Confidence            999999999999999999863      5899999999999999999999883

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=6.1e-31  Score=235.88  Aligned_cols=242  Identities=18%  Similarity=0.157  Sum_probs=188.7

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhh--hh
Q 025074            1 MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNL--VK   78 (258)
Q Consensus         1 l~~rHrkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh~~El~~~~~~~~~~~~~~~~~~~--~~   78 (258)
                      ++.+||.|.++||.+||.++|+++.|.+    +.|  |+..|..|+..|..+|+-|+..+.....+.++.++.+++  ..
T Consensus        17 lt~kq~~e~~dlq~kI~~~~kql~~g~~----~qr--l~~k~~~ls~~ls~~~e~~i~k~~~~~~et~ea~q~~~l~~~q   90 (306)
T COG5539          17 LTEKQRFELKDLQTKITRIMKQLTFGRP----PQR--LNGKCLDLSYALSQKDEVEIEKAPKLRAETNEADQEDSLTPLQ   90 (306)
T ss_pred             HHhhhhcccHHHHHHHHHHHHHHHccCc----hhh--hccccchHHHHhhhhHHHHhhhhhhhcchhhccCCCccCCCcc
Confidence            4679999999999999999999998875    333  999999999999999999999987533222221111111  11


Q ss_pred             hcc------------ccccccc-cCCCCCchhhhhHHHHHHHHHHHHHHHHHHHhcc----cCCchhHHHHHHHHhccCC
Q 025074           79 AVA------------GVTVISQ-HDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNI----VSDRTVEDEKLEKKLGPLG  141 (258)
Q Consensus        79 ~~~------------~~~~~~~-~~~~~~~K~~~Rr~~r~~~~~~~~~~i~~e~~~~----~~~r~~E~~~l~~~L~~~g  141 (258)
                      ..+            +.+.... ..+....+.++||+.+..++.+....+++.++++    ++-...+...+...+..-+
T Consensus        91 ~~~~~~iss~e~s~~qq~~nv~ed~p~~~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~  170 (306)
T COG5539          91 NIPELGISSFEKSVSQQSINVLEDMPGQDDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATW  170 (306)
T ss_pred             cCCccccccCcccccccccchhccCCCCCchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHh
Confidence            111            1111111 1234567999999999999999888888766555    4447788888899999999


Q ss_pred             ceEEeecCCCchHHHHHHHHHhcCCCCC-------------C-------------cchhh--hHhHHHHHHHhhcCCccC
Q 025074          142 LTVNDIKPDGHCLYRAVEDQLAHLSGGE-------------E-------------SAQSQ--VERFENYCKEVESTAAWG  193 (258)
Q Consensus       142 L~i~~I~~DGnCLFrAIa~QL~~~~~~~-------------~-------------f~~~~--~~~~~~Y~~~m~~~~~WG  193 (258)
                      |.-.+++|||+|+|.+|++||..+....             +             ||+.+  ...|++||+.|..++.||
T Consensus       171 i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~~~~a~~g  250 (306)
T COG5539         171 IVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEVLFDASDG  250 (306)
T ss_pred             hhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHhhhccccccc
Confidence            9999999999999999999998764321             0             55544  478999999999999999


Q ss_pred             cHHHHHHHHHhhcccEEEEeCCCCceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 025074          194 GELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  256 (258)
Q Consensus       194 G~lEL~ALs~~l~~~I~V~~~~~~~~~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~  256 (258)
                      +.+|++|||+.|++|+.++...+|.+.+++-       +.+..+-+.|++|+|++| ||||+.
T Consensus       251 ~~~ei~qLas~lk~~~~~~nT~~~~ik~n~c-------~~~~~~e~~~~~Ha~a~G-H~n~~~  305 (306)
T COG5539         251 ITIEIQQLASLLKNPHYYTNTASPSIKCNIC-------GTGFVGEKDYYAHALATG-HYNFGE  305 (306)
T ss_pred             chHHHHHHHHHhcCceEEeecCCceEEeecc-------ccccchhhHHHHHHHhhc-CccccC
Confidence            9999999999999999999999998877642       235568889999999999 999975

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.85  E-value=6.5e-22  Score=157.53  Aligned_cols=102  Identities=35%  Similarity=0.640  Sum_probs=73.7

Q ss_pred             cCCCchHHHHHHHHHhcC----CCCCC--------cch-hhhHhHHHHHH--HhhcCCccCcHHHHHHHHHhhcccEEEE
Q 025074          148 KPDGHCLYRAVEDQLAHL----SGGEE--------SAQ-SQVERFENYCK--EVESTAAWGGELELRALTHCLRKHIMIY  212 (258)
Q Consensus       148 ~~DGnCLFrAIa~QL~~~----~~~~~--------f~~-~~~~~~~~Y~~--~m~~~~~WGG~lEL~ALs~~l~~~I~V~  212 (258)
                      |||||||||||++||+..    ...+.        +-. .-...|..|+.  .|.++++|||++||.|||++|+++|+||
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Wg~~~el~a~a~~~~~~I~v~   80 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGDKMSKPGTWGGEIELQALANVLNRPIIVY   80 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHHHHTSTTSHEEHHHHHHHHHHHTSEEEEE
T ss_pred             CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccccCcHHHHHHHHHHhCCeEEEE
Confidence            799999999999999944    32221        111 11234555554  5899999999999999999999999999


Q ss_pred             eCCCCceE----ecCCcCCCCCCCCCCeEEEEeccCCCCCCCcc
Q 025074          213 SGSFPDVE----MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHY  252 (258)
Q Consensus       213 ~~~~~~~~----ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHY  252 (258)
                      +...+...    +...+   .+....++|+|+|+.|.|..|.||
T Consensus        81 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   81 SSSDGDNVVFIKFTGKY---PPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             CETTTBEEEEEEESCEE---STTTTTTSEEEEEETEEEEETTEE
T ss_pred             EcCCCCccceeeecCcc---ccCCCCCeEEEEEcCCccCCCCCC
Confidence            87654322    22211   123457899999999999999999

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=4.7e-16  Score=138.04  Aligned_cols=104  Identities=19%  Similarity=0.380  Sum_probs=84.0

Q ss_pred             CceEEeecCCCchHHHHHHHHHhcCCCCCC-----------------cch-hhhHhHHHHHHHhhcCCccCcHHHHHHHH
Q 025074          141 GLTVNDIKPDGHCLYRAVEDQLAHLSGGEE-----------------SAQ-SQVERFENYCKEVESTAAWGGELELRALT  202 (258)
Q Consensus       141 gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~-----------------f~~-~~~~~~~~Y~~~m~~~~~WGG~lEL~ALs  202 (258)
                      -|..+.||.|++|||+||+.-|...-....                 |.+ +++.+-.+||.+|.+...|||.|||..||
T Consensus       109 vl~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS  188 (307)
T KOG3288|consen  109 VLSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILS  188 (307)
T ss_pred             eeEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeeh
Confidence            367789999999999999999887543321                 333 24677899999999999999999999999


Q ss_pred             HhhcccEEEEeCCCCce-EecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 025074          203 HCLRKHIMIYSGSFPDV-EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  256 (258)
Q Consensus       203 ~~l~~~I~V~~~~~~~~-~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~  256 (258)
                      +.|+|.|.|++.....+ .||++-      .....+.|.|.      |.|||++.
T Consensus       189 ~~ygveI~vvDiqt~rid~fged~------~~~~rv~llyd------GIHYD~l~  231 (307)
T KOG3288|consen  189 DYYGVEICVVDIQTVRIDRFGEDK------NFDNRVLLLYD------GIHYDPLA  231 (307)
T ss_pred             hhhceeEEEEecceeeehhcCCCC------CCCceEEEEec------ccccChhh
Confidence            99999999999776555 466542      23568999998      89999874

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.36  E-value=7.5e-13  Score=118.41  Aligned_cols=80  Identities=21%  Similarity=0.312  Sum_probs=52.4

Q ss_pred             cchhhh----HhHHHHHHH-hhcCCccCcHHHHHHHHHhhcccEEEEeCCCC--ceEecC-CcCCCCCCCCCCeEEEEec
Q 025074          171 SAQSQV----ERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFP--DVEMGK-EYSNGGSDSSGSSIILSYH  242 (258)
Q Consensus       171 f~~~~~----~~~~~Y~~~-m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~--~~~ig~-~~~~~~~~~~~~~i~L~Y~  242 (258)
                      |.+|+.    .+|++||.. |...+.=++++.|.|||.+|+++|.|+..++.  ...++. .|. ++.++..+.|+|.|.
T Consensus       157 y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~-~~~~~~~~~i~LLyr  235 (244)
T PF10275_consen  157 YEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFP-PDNESQEPQITLLYR  235 (244)
T ss_dssp             HGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES--SSTTSS-SEEEEEE
T ss_pred             HhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCC-CccCCCCCEEEEEEc
Confidence            555654    679999974 88889999999999999999999999987754  111110 111 001245789999999


Q ss_pred             cCCCCCCCccccccc
Q 025074          243 RHAFGLGEHYNSVIP  257 (258)
Q Consensus       243 ~h~y~lGeHYnSv~p  257 (258)
                      .      .|||-++|
T Consensus       236 p------gHYdIly~  244 (244)
T PF10275_consen  236 P------GHYDILYP  244 (244)
T ss_dssp             T------BEEEEEEE
T ss_pred             C------CccccccC
Confidence            5      69999987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=3.3e-11  Score=105.89  Aligned_cols=78  Identities=17%  Similarity=0.248  Sum_probs=60.1

Q ss_pred             cchhhh--HhHHHHHHH-hhcCCccCcHHHHHHHHHhhcccEEEEeCCCCce-EecC-CcCCCCCCCCCCeEEEEeccCC
Q 025074          171 SAQSQV--ERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFPDV-EMGK-EYSNGGSDSSGSSIILSYHRHA  245 (258)
Q Consensus       171 f~~~~~--~~~~~Y~~~-m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~~-~ig~-~~~~~~~~~~~~~i~L~Y~~h~  245 (258)
                      |.+|++  .+...||.. |.....-.|+|+|.|||+++++.|.|...+...- ..+. .|.    ....|.|.|.|..  
T Consensus       174 y~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp----e~s~P~I~LLYrp--  247 (256)
T KOG3991|consen  174 YQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP----EASAPEIYLLYRP--  247 (256)
T ss_pred             hhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc----cccCceEEEEecC--
Confidence            566664  578999995 7777788999999999999999999987765332 2332 232    3568899999984  


Q ss_pred             CCCCCcccccccC
Q 025074          246 FGLGEHYNSVIPI  258 (258)
Q Consensus       246 y~lGeHYnSv~p~  258 (258)
                          .|||-++|.
T Consensus       248 ----GHYdilY~~  256 (256)
T KOG3991|consen  248 ----GHYDILYKK  256 (256)
T ss_pred             ----CccccccCC
Confidence                899999983

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=2e-11  Score=115.24  Aligned_cols=117  Identities=21%  Similarity=0.230  Sum_probs=84.9

Q ss_pred             HHHHHHhccCCceEEeecCCCchHHHHHHHHHhcCCCCC----------------CcchhhhHhHHHHHHHhhcCCccCc
Q 025074          131 EKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------------ESAQSQVERFENYCKEVESTAAWGG  194 (258)
Q Consensus       131 ~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~----------------~f~~~~~~~~~~Y~~~m~~~~~WGG  194 (258)
                      ..+...+...|+.+..|..||+|+|||++||+++....+                .|..|+.++|..|+..++..+.||.
T Consensus       207 ~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gn  286 (371)
T KOG2605|consen  207 ERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYGDDEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPGN  286 (371)
T ss_pred             HHHHHHHHHhhhhhhhcccCCchhhhccHHHhhcCHHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCCCCcc
Confidence            334445578899999999999999999999999965443                1777888999999999999999999


Q ss_pred             HHHHHHHHH---hhcccEEEEeCCCCceE-ecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 025074          195 ELELRALTH---CLRKHIMIYSGSFPDVE-MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  257 (258)
Q Consensus       195 ~lEL~ALs~---~l~~~I~V~~~~~~~~~-ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~p  257 (258)
                      ++|++|+|.   ....++.+.+...+.++ +.+.+.     .+...+++.|     ..-.||+.+++
T Consensus       287 hie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~n~-----~~~~h~~~~~~  343 (371)
T KOG2605|consen  287 HIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIE-----ESVKMEKYNF-----WVEVHYNTARH  343 (371)
T ss_pred             hHHHhhhhhhhhhccccceeecccccceeccCcccc-----cchhhhhhcc-----cchhhhhhccc
Confidence            999999996   44455555555555543 322221     1122233333     34699999875

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=3.9e-06  Score=76.46  Aligned_cols=95  Identities=15%  Similarity=0.155  Sum_probs=71.0

Q ss_pred             CCCchHHHHHHHHHhcCCCC--------------CCcchhh-hHhHHHHHHHhhcCCccC-cHHHHHHHHHhhcccEEEE
Q 025074          149 PDGHCLYRAVEDQLAHLSGG--------------EESAQSQ-VERFENYCKEVESTAAWG-GELELRALTHCLRKHIMIY  212 (258)
Q Consensus       149 ~DGnCLFrAIa~QL~~~~~~--------------~~f~~~~-~~~~~~Y~~~m~~~~~WG-G~lEL~ALs~~l~~~I~V~  212 (258)
                      +|..|+|++++..|+.....              ..|.+.+ +.+--.||.++.....|| |.+||.+||+.|++.|+|+
T Consensus       119 ~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~V  198 (306)
T COG5539         119 DDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVV  198 (306)
T ss_pred             CchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeeeee
Confidence            67899999999888763211              1154443 456789999999999999 9999999999999999999


Q ss_pred             eCCCCce-EecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 025074          213 SGSFPDV-EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  256 (258)
Q Consensus       213 ~~~~~~~-~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~  256 (258)
                      ..+.... .+++.       .....+.+.|.      |.|||+..
T Consensus       199 dv~~~~~dr~~~~-------~~~q~~~i~f~------g~hfD~~t  230 (306)
T COG5539         199 DVDKDSEDRYNSH-------PYVQRISILFT------GIHFDEET  230 (306)
T ss_pred             ecchhHHhhccCC-------hhhhhhhhhhc------ccccchhh
Confidence            9885433 34432       11235677776      89999753

>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.53  E-value=0.54  Score=36.22  Aligned_cols=58  Identities=16%  Similarity=0.320  Sum_probs=44.9

Q ss_pred             ecCCCchHHHHHHHHHhcCCCCCCcchh---h---hHhHHHHHHHhh--cCCccCcHHHHHHHHHhhcccEEEE
Q 025074          147 IKPDGHCLYRAVEDQLAHLSGGEESAQS---Q---VERFENYCKEVE--STAAWGGELELRALTHCLRKHIMIY  212 (258)
Q Consensus       147 I~~DGnCLFrAIa~QL~~~~~~~~f~~~---~---~~~~~~Y~~~m~--~~~~WGG~lEL~ALs~~l~~~I~V~  212 (258)
                      |..|+|||.-||+..|...     |+..   +   -.++..||..++  .+.+|-+   -..+|+.+++.|.|-
T Consensus         3 ~sR~NNCLVVAis~~L~~T-----~e~l~~~M~An~~~i~~y~~W~r~~~~STW~D---C~mFA~~LkVsm~vk   68 (104)
T PF05415_consen    3 ASRPNNCLVVAISECLGVT-----LEKLDNLMQANVSTIKKYHTWLRKKRPSTWDD---CRMFADALKVSMQVK   68 (104)
T ss_pred             ccCCCCeEeehHHHHhcch-----HHHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH---HHHHHHhheeEEEEE
Confidence            5679999999999999653     4432   1   257899999876  4789964   568999999998873

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
3pfy_A	185	OTU domain-containing protein 5; structural genomi	2e-30
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	2e-21
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	6e-19
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	6e-18
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	4e-04
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	4e-04

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score =  111 bits (278), Expect = 2e-30
 Identities = 36/190 (18%), Positives = 58/190 (30%), Gaps = 28/190 (14%)

Query: 88  QHDQAKPSKGTKRREKRAQQEAAREQRIQ---EEQSNIVSDRTVEDEKLEKKLGPLGLTV 144
            H     S       + A   +  E        E  +  +    E    +      G  +
Sbjct: 2   HHHHHHSSGRENLYFQGAGYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKKGFII 61

Query: 145 NDIKPDGHCLYRAVEDQLAHLSGGEESAQSQV----------------ERFENYCKEVES 188
             +K DG CL+RAV DQ+       E  +                   E F  Y      
Sbjct: 62  KQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRK 121

Query: 189 TAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGL 248
               G  +E++A+     + + +Y  S   +            +    I +SYHR+    
Sbjct: 122 NNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ----NEDEPIRVSYHRN---- 173

Query: 249 GEHYNSVIPI 258
             HYNSV+  
Sbjct: 174 -IHYNSVVNP 182

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 87.8 bits (217), Expect = 2e-21
 Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 27/137 (19%)

Query: 142 LTVNDIKPDGHCLYRAVEDQLAHLSGGE--------------------ESAQSQVERFEN 181
             +     DG+C Y ++ +                               A+      E+
Sbjct: 31  FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLED 90

Query: 182 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSY 241
           Y K + S   WG  LE   L   +   I+I++ +  D          G     +++ L +
Sbjct: 91  YLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGI--KFGDGDVFTAVNLLH 148

Query: 242 HRHAFGLGEHYNSVIPI 258
                    H++++  +
Sbjct: 149 SG-----QTHFDALRIL 160

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 81.7 bits (201), Expect = 6e-19
 Identities = 19/137 (13%), Positives = 42/137 (30%), Gaps = 27/137 (19%)

Query: 142 LTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVER--------------------FEN 181
             +     DG+C Y ++ +              +                        E+
Sbjct: 31  FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLED 90

Query: 182 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSY 241
           Y K + S   WG  LE   L   +   I+I++ +  D    +     G     +++ L +
Sbjct: 91  YLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEV--EAGIKFGDGDVFTAVNLLH 148

Query: 242 HRHAFGLGEHYNSVIPI 258
                    H++++  +
Sbjct: 149 SG-----QTHFDALRIL 160

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 78.8 bits (194), Expect = 6e-18
 Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 36/149 (24%)

Query: 129 EDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQ---SQV--------- 176
             E      G   L+V+ +  D  CL+ A+   +      ++S +     V         
Sbjct: 7   STEMSIGGSGENVLSVHPVLDDNSCLFHAIAYGI----FKQDSVRDLREMVSKEVLNNPV 62

Query: 177 --------ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNG 228
                   +  ++Y + +    +WGG +E+  ++  L   I +      D++  K     
Sbjct: 63  KFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVV-----DIDAVK-IEKF 116

Query: 229 GSDSSGSSIILSYHRHAFGLGEHYNSVIP 257
             D   + I++ ++      G HY+S+  
Sbjct: 117 NEDKFDNYILILFN------GIHYDSLTM 139

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 29/172 (16%)

Query: 106 QQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG--HCLYRAVEDQL- 162
            +E  + +    +  N +     E+ K           V  ++ DG    L +   DQ  
Sbjct: 68  SREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSA 127

Query: 163 -------------AHLSGGEESAQSQVER---FENYC-KEVESTAAWGGELELRALTHCL 205
                        A +    +  +  ++     +++C  EVE  A     +++ AL+  L
Sbjct: 128 SDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQAL 187

Query: 206 RKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 257
              + +    + D        +   +++  S+ L Y         HYN +  
Sbjct: 188 SIALQVE---YVDEMDTALNHHVFPEAATPSVYLLYK------TSHYNILYA 230

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 9/76 (11%)

Query: 179 FENYC-KEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSI 237
            + +C +EVE        + + AL   L   I +        E G    +   + S   +
Sbjct: 163 VKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVE--YMDRGEGGTTNPHIFPEGSEPKV 220

Query: 238 ILSYHRHAFGLGEHYN 253
            L Y         HY+
Sbjct: 221 YLLYR------PGHYD 230

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
3pfy_A	185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.97
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.95
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.95
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.86
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.83
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.73
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.7
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.44
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.35

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=100.00  E-value=3.9e-36  Score=257.80  Aligned_cols=130  Identities=25%  Similarity=0.362  Sum_probs=93.3

Q ss_pred             HHHhcccCCchhHHHHHHHHhccCCceEEeecCCCchHHHHHHHHHhcCCCCC----------------CcchhhhHhHH
Q 025074          117 EEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------------ESAQSQVERFE  180 (258)
Q Consensus       117 ~e~~~~~~~r~~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~----------------~f~~~~~~~~~  180 (258)
                      .|+...++.+..|..-+...|+.+||.++.||+|||||||||++||++.+..+                .|.+|+.++|+
T Consensus        34 ~~~~~~~~~~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e  113 (185)
T 3pfy_A           34 IEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFT  113 (185)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-----
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            34555566689999888888899999999999999999999999999875443                28889999999


Q ss_pred             HHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEe--cCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 025074          181 NYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEM--GKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  257 (258)
Q Consensus       181 ~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~~~i--g~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~p  257 (258)
                      +||.+|+++++|||+|||+|||++|+++|+||+.+++++.+  |.+.      ...++|+|+||+     |+|||||++
T Consensus       114 ~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~------~~~~~I~L~Y~~-----~~HYnSv~~  181 (185)
T 3pfy_A          114 TYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ------NEDEPIRVSYHR-----NIHYNSVVN  181 (185)
T ss_dssp             ------------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSC------CTTSCEEEEEET-----TTEEEEEEC
T ss_pred             HHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccC------CCCCEEEEEECC-----CCCcccccC
Confidence            99999999999999999999999999999999988765543  3222      237899999998     699999986

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.97  E-value=3.1e-31  Score=231.88  Aligned_cols=106  Identities=18%  Similarity=0.334  Sum_probs=91.0

Q ss_pred             ccCCceEEeecCCCchHHHHHHHHHhcCCCCC----------------Ccc-hhhhHhHHHHHHHhhcCCccCcHHHHHH
Q 025074          138 GPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------------ESA-QSQVERFENYCKEVESTAAWGGELELRA  200 (258)
Q Consensus       138 ~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~----------------~f~-~~~~~~~~~Y~~~m~~~~~WGG~lEL~A  200 (258)
                      ...||.+++||+|||||||||++|| +....+                .|. .+++.+|++||.+|+++++|||+|||+|
T Consensus        16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A   94 (212)
T 3by4_A           16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI   94 (212)
T ss_dssp             CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred             CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence            4458999999999999999999999 654443                275 4467899999999999999999999999


Q ss_pred             HHHhhcccEEEEeCCC-CceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 025074          201 LTHCLRKHIMIYSGSF-PDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  257 (258)
Q Consensus       201 Ls~~l~~~I~V~~~~~-~~~~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~p  257 (258)
                      ||++|+++|.||++++ +.+.||+++       ..++|+|+|+      |+|||||++
T Consensus        95 ls~~~~~~I~V~~~~~~~~~~~~~~~-------~~~~I~L~Y~------g~HYdsl~~  139 (212)
T 3by4_A           95 ISDALAVAIYVVDIDAVKIEKFNEDK-------FDNYILILFN------GIHYDSLTM  139 (212)
T ss_dssp             HHHHHTCEEEEEETTTTEEEEESTTT-------CSEEEEEEEC------SSCEEEEEE
T ss_pred             HHHHHCCCEEEEECCCCCeEEeCCCC-------CCCeEEEEEc------CCcceEEec
Confidence            9999999999999874 556788754       2679999997      899999985

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.95  E-value=3.9e-28  Score=208.14  Aligned_cols=105  Identities=19%  Similarity=0.347  Sum_probs=84.2

Q ss_pred             ceEEeecCCCchHHHHHHHHHhcC-CCC-----CC--------------cchhhhHhHHHHHHHhhcCCccCcHHHHHHH
Q 025074          142 LTVNDIKPDGHCLYRAVEDQLAHL-SGG-----EE--------------SAQSQVERFENYCKEVESTAAWGGELELRAL  201 (258)
Q Consensus       142 L~i~~I~~DGnCLFrAIa~QL~~~-~~~-----~~--------------f~~~~~~~~~~Y~~~m~~~~~WGG~lEL~AL  201 (258)
                      +.+..||+|||||||||++||++. +..     +.              -+-+++.+|++||++|+++++|||++||+||
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~~~~~~~~~~Y~~~m~~~~~WGg~iEL~Al  110 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASML  110 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTHHHHCCCHHHHHHHHTSTTCCCBHHHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHhhhcCCCHHHHHHHhhCCCccCcHHHHHHH
Confidence            778889999999999999999986 332     21              1112357899999999999999999999999


Q ss_pred             HHhhcccEEEEeCCCCc-----eEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 025074          202 THCLRKHIMIYSGSFPD-----VEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  258 (258)
Q Consensus       202 s~~l~~~I~V~~~~~~~-----~~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~p~  258 (258)
                      |++|+++|+|++++.+.     +.+|++.       ..++|+|+|+.     |+|||||+|+
T Consensus       111 s~~~~v~I~V~~~d~~~~~~~i~~f~~~~-------~~~~I~L~Y~g-----~~HYdsl~~~  160 (185)
T 3phx_A          111 AKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALRIL  160 (185)
T ss_dssp             HHHHCCCEEEEEC--CCBCCEEEEESSCC-------TTTSEEEEEET-----TTEEEEEEEC
T ss_pred             HHHHCCcEEEEEecCCCCceEEEEcCCCC-------CCCEEEEEECC-----CcCchhceEC
Confidence            99999999999977654     3566542       26899999983     5999999874

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.95  E-value=4.3e-28  Score=212.70  Aligned_cols=105  Identities=18%  Similarity=0.321  Sum_probs=85.7

Q ss_pred             ceEEeecCCCchHHHHHHHHHhcCC-CC-----CC--------c------chhhhHhHHHHHHHhhcCCccCcHHHHHHH
Q 025074          142 LTVNDIKPDGHCLYRAVEDQLAHLS-GG-----EE--------S------AQSQVERFENYCKEVESTAAWGGELELRAL  201 (258)
Q Consensus       142 L~i~~I~~DGnCLFrAIa~QL~~~~-~~-----~~--------f------~~~~~~~~~~Y~~~m~~~~~WGG~lEL~AL  201 (258)
                      +.+..||||||||||||++||++.. ..     +.        |      +.+++.+|++||++|+++++|||++||+||
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~~~~~~~feeY~~~m~~~g~WGG~iEL~Al  110 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASML  110 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHHHHHCCCHHHHHHHHHSTTCCCCHHHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhhhhcCCCHHHHHHHhcCCCccCCHHHHHHH
Confidence            7788999999999999999998863 22     11        0      112356899999999999999999999999


Q ss_pred             HHhhcccEEEEeCCCC-----ceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 025074          202 THCLRKHIMIYSGSFP-----DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  258 (258)
Q Consensus       202 s~~l~~~I~V~~~~~~-----~~~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~p~  258 (258)
                      |++|+++|+||+++.+     .+.||++.       ..++|+|+|+.     |+|||||+|+
T Consensus       111 S~~~~v~I~V~~~d~~g~~~~i~~fge~~-------~~~~I~L~Y~g-----~~HYdSL~~~  160 (219)
T 3phu_A          111 AKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALRIL  160 (219)
T ss_dssp             HHHTTCCEEEEEESSSSBEEEEEEESSCC-------TTTSEEEEEET-----TTEEEEEEEC
T ss_pred             HHHhCCCEEEEEecCCCCceeEEEecCCC-------CCCeEEEEECC-----CcCchhheEC
Confidence            9999999999988776     33566543       26899999984     5999999874

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.86  E-value=4.4e-22  Score=176.24  Aligned_cols=78  Identities=21%  Similarity=0.326  Sum_probs=60.6

Q ss_pred             cchhhhH--hHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEe-cCCcCCCCCCCCCCeEEEEeccCCC
Q 025074          171 SAQSQVE--RFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEM-GKEYSNGGSDSSGSSIILSYHRHAF  246 (258)
Q Consensus       171 f~~~~~~--~~~~Y~~-~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~~~i-g~~~~~~~~~~~~~~i~L~Y~~h~y  246 (258)
                      |.+|+++  +|++||. .|+.+++|||+|||+|||++|++||.|++.+++...+ ...|.    ++..+.|+|.|+    
T Consensus       150 f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~----~~~~~~I~LlY~----  221 (234)
T 1tff_A          150 FRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFP----EAATPSVYLLYK----  221 (234)
T ss_dssp             HGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCC----CCSSCSEEEEEE----
T ss_pred             HhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCC----CCCCCeEEEEEC----
Confidence            6677654  8999999 7999999999999999999999999999988875222 22342    234678999998    


Q ss_pred             CCCCcccccccC
Q 025074          247 GLGEHYNSVIPI  258 (258)
Q Consensus       247 ~lGeHYnSv~p~  258 (258)
                        ++|||+|+|.
T Consensus       222 --pgHYdily~~  231 (234)
T 1tff_A          222 --TSHYNILYAA  231 (234)
T ss_dssp             --TTEEEEEEEC
T ss_pred             --CCCceecccC
Confidence              5699999984

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.83  E-value=7.6e-21  Score=168.26  Aligned_cols=77  Identities=17%  Similarity=0.235  Sum_probs=61.0

Q ss_pred             cchhhhH--hHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCce--EecCCcCCCCCCCCCCeEEEEeccCC
Q 025074          171 SAQSQVE--RFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDV--EMGKEYSNGGSDSSGSSIILSYHRHA  245 (258)
Q Consensus       171 f~~~~~~--~~~~Y~~-~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~~--~ig~~~~~~~~~~~~~~i~L~Y~~h~  245 (258)
                      |.+|+++  +|++||. .|+.+++|||++||+|||++|++||.|++.+++..  ..+..|..    +..++|+|+|+.  
T Consensus       153 f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~----~~~p~I~LlY~p--  226 (234)
T 2zfy_A          153 FEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE----GSEPKVYLLYRP--  226 (234)
T ss_dssp             HGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST----TCCCSEEEEEET--
T ss_pred             HhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC----CCCCeEEEEECC--
Confidence            6667653  8999997 69999999999999999999999999999887641  12233431    246789999984  


Q ss_pred             CCCCCccccccc
Q 025074          246 FGLGEHYNSVIP  257 (258)
Q Consensus       246 y~lGeHYnSv~p  257 (258)
                          +|||+|+|
T Consensus       227 ----gHYdiLy~  234 (234)
T 2zfy_A          227 ----GHYDILYK  234 (234)
T ss_dssp             ----TEEEEEEC
T ss_pred             ----CCcccCCC
Confidence                59999998

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.73  E-value=2.3e-18  Score=155.74  Aligned_cols=81  Identities=17%  Similarity=0.179  Sum_probs=61.1

Q ss_pred             cchhhh--HhHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCc-eEecC-C-cCCCCCCCCCCeEEEEeccC
Q 025074          171 SAQSQV--ERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPD-VEMGK-E-YSNGGSDSSGSSIILSYHRH  244 (258)
Q Consensus       171 f~~~~~--~~~~~Y~~-~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~-~~ig~-~-~~~~~~~~~~~~i~L~Y~~h  244 (258)
                      |.+|+.  .++++||. .|+.+++|||+|+|+|||++|+++|.|+..++.. ..+.. . |.. +.....+.|+|.|.  
T Consensus       188 f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~-~~~~~~p~I~LLYr--  264 (284)
T 4dhi_B          188 YAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPS-DDQQIAPEITLLYR--  264 (284)
T ss_dssp             HGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESC-CCSCCCCSEEEEEE--
T ss_pred             HHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCC-CCCCCCCEEEEeec--
Confidence            777774  47999999 8999999999999999999999999999877531 11111 1 211 11123478999999  


Q ss_pred             CCCCCCcccccccC
Q 025074          245 AFGLGEHYNSVIPI  258 (258)
Q Consensus       245 ~y~lGeHYnSv~p~  258 (258)
                          +.|||-|+|.
T Consensus       265 ----pgHYDILY~~  274 (284)
T 4dhi_B          265 ----PGHYDVIYKK  274 (284)
T ss_dssp             ----TTEEEEEEEC
T ss_pred             ----CCCccccccC
Confidence                6899999983

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.70  E-value=3.1e-17  Score=155.18  Aligned_cols=77  Identities=17%  Similarity=0.242  Sum_probs=59.8

Q ss_pred             cchhhhH--hHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCC-ceEecC-CcCCCCCCCCCCeEEEEeccCC
Q 025074          171 SAQSQVE--RFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFP-DVEMGK-EYSNGGSDSSGSSIILSYHRHA  245 (258)
Q Consensus       171 f~~~~~~--~~~~Y~~-~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~-~~~ig~-~~~~~~~~~~~~~i~L~Y~~h~  245 (258)
                      |.+|+++  ++++||. .|..+++||||++|.|||++|+++|.|+..++. ...+.. .|.    .+..+.|+|.|..  
T Consensus       318 f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~----~~~~~~I~LLYrP--  391 (399)
T 4ddg_A          318 FEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFP----EGSEPKVYLLYRP--  391 (399)
T ss_dssp             HGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETT----TTCCCCCEEEEET--
T ss_pred             HhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCC----CCCCCEEEEEEcC--
Confidence            5666643  7999999 899999999999999999999999999986652 111211 121    2347889999985  


Q ss_pred             CCCCCccccccc
Q 025074          246 FGLGEHYNSVIP  257 (258)
Q Consensus       246 y~lGeHYnSv~p  257 (258)
                          .|||.|+|
T Consensus       392 ----gHYDiLY~  399 (399)
T 4ddg_A          392 ----GHYDILYK  399 (399)
T ss_dssp             ----BEEEEEEC
T ss_pred             ----CccccCCC
Confidence                59999987

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.44  E-value=8.1e-07  Score=82.22  Aligned_cols=112  Identities=19%  Similarity=0.330  Sum_probs=71.7

Q ss_pred             CCceEEeecCCCchHHHHHHHHHhcCCCCCC----------------------------cchh-------h----hHhHH
Q 025074          140 LGLTVNDIKPDGHCLYRAVEDQLAHLSGGEE----------------------------SAQS-------Q----VERFE  180 (258)
Q Consensus       140 ~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~----------------------------f~~~-------~----~~~~~  180 (258)
                      .-|......||||||.+|++..+++.+....                            +.+|       +    ..+|+
T Consensus       110 ~rL~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~  189 (390)
T 3dkb_A          110 RKLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWD  189 (390)
T ss_dssp             CCEEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHH
T ss_pred             cceEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHH
Confidence            3477789999999999999999999766531                            0011       1    23444


Q ss_pred             HHHHHhhcCCc-------c--CcHHHHHHHHHhhcccEEEEeCC-------CC---ceEecCCcCC---CCCCCCCCeEE
Q 025074          181 NYCKEVESTAA-------W--GGELELRALTHCLRKHIMIYSGS-------FP---DVEMGKEYSN---GGSDSSGSSII  238 (258)
Q Consensus       181 ~Y~~~m~~~~~-------W--GG~lEL~ALs~~l~~~I~V~~~~-------~~---~~~ig~~~~~---~~~~~~~~~i~  238 (258)
                      .-+.....+..       .  =-++-+.+||+++++||+||...       |.   ++.||.-|..   +.+.....||.
T Consensus       190 ~Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~  269 (390)
T 3dkb_A          190 NLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIV  269 (390)
T ss_dssp             HHHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEE
T ss_pred             HHHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceE
Confidence            44443332211       1  12788999999999999999532       11   1223322321   22334577999


Q ss_pred             EEeccCCCCCCCccccccc
Q 025074          239 LSYHRHAFGLGEHYNSVIP  257 (258)
Q Consensus       239 L~Y~~h~y~lGeHYnSv~p  257 (258)
                      |+|.+      .||.++++
T Consensus       270 LgY~s------~HFsaLV~  282 (390)
T 3dkb_A          270 LGYDS------HHFVPLVT  282 (390)
T ss_dssp             EEECS------SCEEEEEE
T ss_pred             EEecc------Cceeeeee
Confidence            99996      69999986

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.35  E-value=1.1e-06  Score=82.69  Aligned_cols=111  Identities=19%  Similarity=0.205  Sum_probs=76.2

Q ss_pred             CceEEeecCCCchHHHHHHHHHhcCCCCCC-------------------------------c-chh------hhHhHHHH
Q 025074          141 GLTVNDIKPDGHCLYRAVEDQLAHLSGGEE-------------------------------S-AQS------QVERFENY  182 (258)
Q Consensus       141 gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~-------------------------------f-~~~------~~~~~~~Y  182 (258)
                      .|..-...||||||.+|++-.|++.+....                               | -.|      ...+|+.-
T Consensus       188 rL~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~i  267 (454)
T 3zrh_A          188 RLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFI  267 (454)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred             ceeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHH
Confidence            367778999999999999999999765421                               1 011      12456666


Q ss_pred             HHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCC---------CceEecCCcCC---CCCCCCCCeEEEEeccCCCCCCC
Q 025074          183 CKEVESTAAWGGELELRALTHCLRKHIMIYSGSF---------PDVEMGKEYSN---GGSDSSGSSIILSYHRHAFGLGE  250 (258)
Q Consensus       183 ~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~---------~~~~ig~~~~~---~~~~~~~~~i~L~Y~~h~y~lGe  250 (258)
                      +.-...++.==-++-+.+||+++++||+||....         +++.||.-|..   +++.....||.|+|.+      .
T Consensus       268 v~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~------g  341 (454)
T 3zrh_A          268 LSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR------G  341 (454)
T ss_dssp             HHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET------T
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc------c
Confidence            6656666665557889999999999999997532         11233322321   1223446899999996      5


Q ss_pred             ccccccc
Q 025074          251 HYNSVIP  257 (258)
Q Consensus       251 HYnSv~p  257 (258)
                      ||.++++
T Consensus       342 HFsaLV~  348 (454)
T 3zrh_A          342 HFSALVA  348 (454)
T ss_dssp             EEEEEEE
T ss_pred             ceeeeee
Confidence            9999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	6e-08

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 6e-08
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 177 ERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGS 235
              +++C  EVE  A     +++ AL+  L   + +    + D        +   +++  
Sbjct: 152 MDIKDFCTHEVEPMATECDHIQITALSQALSIALQVE---YVDEMDTALNHHVFPEAATP 208

Query: 236 SIILSYHRHAFGLGEHYNSVIP 257
           S+ L Y         HYN +  
Sbjct: 209 SVYLLYK------TSHYNILYA 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.8

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.1e-20  Score=162.37  Aligned_cols=78  Identities=18%  Similarity=0.296  Sum_probs=57.9

Q ss_pred             cchhhh--HhHHHHHHH-hhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEecC-CcCCCCCCCCCCeEEEEeccCCC
Q 025074          171 SAQSQV--ERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGK-EYSNGGSDSSGSSIILSYHRHAF  246 (258)
Q Consensus       171 f~~~~~--~~~~~Y~~~-m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~~~ig~-~~~~~~~~~~~~~i~L~Y~~h~y  246 (258)
                      |.+|++  .++++||.+ |..+++|||++||.|||.+|+++|.|+..+.+...+.. .+.    ....++|+|.|.    
T Consensus       144 y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~----~~~~~~I~Lly~----  215 (228)
T d1tffa_         144 FRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFP----EAATPSVYLLYK----  215 (228)
T ss_dssp             HGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCC----CCSSCSEEEEEE----
T ss_pred             HHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCC----CCCCCEEEEEeC----
Confidence            455553  478999986 99999999999999999999999999988765433321 221    234678999997    


Q ss_pred             CCCCcccccccC
Q 025074          247 GLGEHYNSVIPI  258 (258)
Q Consensus       247 ~lGeHYnSv~p~  258 (258)
                        +.|||+|+|.
T Consensus       216 --pgHYdiLY~~  225 (228)
T d1tffa_         216 --TSHYNILYAA  225 (228)
T ss_dssp             --TTEEEEEEEC
T ss_pred             --CCCcccCccC
Confidence              5799999984