Citrus Sinensis ID: 025097

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MDSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIGGVTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSINGPPHRPM
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEcccccccccccccEEEcccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccHEHcccEEEccccccccEEEEccccccccccEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MDSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAnrtysssdhhhfnnniniggvtaqvppvpnakqsrifvkadskdsslivkdghqwrkygqkvtkdnpsprayfrcsmassgcpvkkkvQRCMEDKSFLVATyegehnhdvqcsslgqsssltnycspkssivhcpdyqttdsfgsdvtldltlsgsnqetrpprnlmqvcDDKKKIEEYVASLTKDPSFTIAVADAVAssingpphrpm
Flexible Loop (DISEMBL)
mdshnspkeKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIGGVTAQVPPVPNAKQSRIfvkadskdsslivkdghqwrkygqkvtkdnpsprayfrcsmassgcpvkkkVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLsgsnqetrpprnlmqvcDDKKKIEEYVASLTKDPSFTIAVADAVASsingpphrpm
Low Complexity Region (SEG)
MDSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFnnniniggVTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSINGPPHRPM
Disordered region (IsUnstruct)
****************************RHLVKAMNNQCNDLLARIHEANRTY***DHHHFNNNINIGGVTAQV**********IFV********LIVKDGHQWRKYG***********AYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQ***********NYCSPKSSIVHCPDYQTTDSFGSDVTL*************************KIEEYVASLTKDPSFTIAVAD**************
Disordered Region (DISOPRED)
***************************************************************************************KADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHN**************************************************************************SLTKDPSFTIAVADAVAS**********
Disordered Region (DISEMBL)
**********MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIGGVTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASS*********
Disordered Region (DISPRO)
*******KEKMKLLQAKLEHVRK********************************************************AKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEH*********************************************************************IEEYVASLTKDPSFTIAVADAVASSIN*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSHNSPKEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYSSSDHHHFNNNINIGGVTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSINGPPHRPM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
Q9SK33	271	Probable WRKY transcripti	yes	no	0.806	0.767	0.346	6e-31
Q9SAH7	302	Probable WRKY transcripti	no	no	0.662	0.566	0.454	6e-31
Q9C5T4	310	WRKY transcription factor	no	no	0.562	0.467	0.482	6e-31
Q9XEC3	528	Probable WRKY transcripti	no	no	0.399	0.195	0.462	8e-23
Q9C519	553	WRKY transcription factor	no	no	0.286	0.133	0.584	1e-22
Q93WT0	538	Probable WRKY transcripti	no	no	0.286	0.137	0.584	2e-22
Q9ZSI7	489	Probable WRKY transcripti	no	no	0.593	0.312	0.314	9e-22
Q9C9F0	374	Probable WRKY transcripti	no	no	0.437	0.302	0.433	6e-21
Q8VWV6	480	Probable WRKY transcripti	no	no	0.290	0.156	0.564	3e-20
Q9LXG8	548	Probable WRKY transcripti	no	no	0.333	0.156	0.494	7e-20

>sp|Q9SK33|WRK60_ARATH Probable WRKY transcription factor 60 OS=Arabidopsis thaliana GN=WRKY60 PE=1 SV=1

 Score =  134 bits (338), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 130/260 (50%), Gaps = 52/260 (20%)

Query: 9   EKMKLLQAKLEHVRKQNENLRHLVK-------AMNNQCNDLLAR-----IHEANRTYSSS 56
           EK  +LQ ++  V  +N+ L  ++        A+NN   +L +R     ++  N+  +  
Sbjct: 40  EKRNMLQDEINRVNSENKKLTEMLARVCEKYYALNNLMEELQSRKSPESVNFQNKQLTGK 99

Query: 57  DHHHFNNNIN--IGGVTAQVPPVPNAKQ--SRIFVKADSKDSSLIVKDGHQWRKYGQKVT 112
                +  ++  IG     +  + N K   S  +  A+  D+SL VKDG+QWRKYGQK+T
Sbjct: 100 RKQELDEFVSSPIGLSLGPIENITNDKATVSTAYFAAEKSDTSLTVKDGYQWRKYGQKIT 159

Query: 113 KDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTN 172
           +DNPSPRAYFRCS + S C VKKKVQR  ED SFLVATYEG HNH               
Sbjct: 160 RDNPSPRAYFRCSFSPS-CLVKKKVQRSAEDPSFLVATYEGTHNH--------------- 203

Query: 173 YCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSN--QETRPPRNLMQVCDDKKKIEEYVA 230
              P +S+               V LDL   G    +E +    + +V      +++  +
Sbjct: 204 -TGPHASVSRT------------VKLDLVQGGLEPVEEKKERGTIQEVL-----VQQMAS 245

Query: 231 SLTKDPSFTIAVADAVASSI 250
           SLTKDP FT A+A A++  +
Sbjct: 246 SLTKDPKFTAALATAISGRL 265

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAH7|WRK40_ARATH Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1

 Score =  134 bits (337), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 107/174 (61%), Gaps = 3/174 (1%)

Query: 77  VPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKK 136
           V   K SR++ K ++ D++L+VKDG+QWRKYGQKVT+DNPSPRAYF+C+ A S C VKKK
Sbjct: 124 VVKEKVSRVYYKTEASDTTLVVKDGYQWRKYGQKVTRDNPSPRAYFKCACAPS-CSVKKK 182

Query: 137 VQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDV 196
           VQR +ED+S LVATYEGEHNH +  S +  ++ L  + S   S           S    V
Sbjct: 183 VQRSVEDQSVLVATYEGEHNHPMP-SQIDSNNGLNRHISHGGSASTPVAANRRSSLTVPV 241

Query: 197 TLDLTLSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSI 250
           T  + +  S + T P   +      K  +E+  +SLTKDP+FT A+A AV   +
Sbjct: 242 TT-VDMIESKKVTSPTSRIDFPQVQKLLVEQMASSLTKDPNFTAALAAAVTGKL 294

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T4|WRK18_ARATH WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2

 Score =  134 bits (337), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 105/174 (60%), Gaps = 29/174 (16%)

Query: 80  AKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQR 139
           AK S ++V  ++ D+SL VKDG QWRKYGQKVT+DNPSPRAYFRCS A S CPVKKKVQR
Sbjct: 157 AKVSTVYVPTETSDTSLTVKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPS-CPVKKKVQR 215

Query: 140 CMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLD 199
             ED S LVATYEG HNH      LG ++S  +  S   S              S VTLD
Sbjct: 216 SAEDPSLLVATYEGTHNH------LGPNASEGDATSQGGS--------------STVTLD 255

Query: 200 LTLSGSNQ---ETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSI 250
           L ++G ++   E     N MQ    +  I++  +SLTKD  FT A+A A++  +
Sbjct: 256 L-VNGCHRLALEKNERDNTMQ----EVLIQQMASSLTKDSKFTAALAAAISGRL 304

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XEC3|WRK42_ARATH Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1

 Score =  107 bits (267), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 72/106 (67%), Gaps = 3/106 (2%)

Query: 70  VTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASS 129
           V  Q       +++R+ V+A S+  + ++ DG QWRKYGQK+ K NP PRAY+RC+MA  
Sbjct: 265 VIEQAAAEATMRKARVSVRARSE--APMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAV- 321

Query: 130 GCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCS 175
           GCPV+K+VQRC ED++ L+ TYEG HNH +  +++  +S+ T   S
Sbjct: 322 GCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTTTAAAS 367

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C519|WRKY6_ARATH WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 62/77 (80%), Gaps = 3/77 (3%)

Query: 81  KQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRC 140
           +++R+ V+A S+  + ++ DG QWRKYGQK+ K NP PRAY+RC+MA+ GCPV+K+VQRC
Sbjct: 296 RKARVSVRARSE--APMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAT-GCPVRKQVQRC 352

Query: 141 MEDKSFLVATYEGEHNH 157
            ED+S L+ TYEG HNH
Sbjct: 353 AEDRSILITTYEGNHNH 369

Transcription factor involved in the control of processes related to senescence and pathogen defense. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WT0|WRK31_ARATH Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 61/77 (79%), Gaps = 3/77 (3%)

Query: 81  KQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRC 140
           +++R+ V+A S+  + ++ DG QWRKYGQK+ K NP PRAY+RC+MA  GCPV+K+VQRC
Sbjct: 281 RKARVSVRARSE--AAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMA-GGCPVRKQVQRC 337

Query: 141 MEDKSFLVATYEGEHNH 157
            ED+S L+ TYEG HNH
Sbjct: 338 AEDRSILITTYEGNHNH 354

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSI7|WRK47_ARATH Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2

 Score =  103 bits (258), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 96/210 (45%), Gaps = 57/210 (27%)

Query: 2   DSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHF 61
           D  +  K ++  L+ +LE + ++N  L+HL+  ++   NDL  R+  A +T     HH  
Sbjct: 90  DGDDKTKTQISRLKLELERLHEENHKLKHLLDEVSESYNDLQRRVLLARQTQVEGLHHKQ 149

Query: 62  NNNINIGGVTAQV----------------------------------PPVPNAKQ----- 82
           + ++   G +  +                                  P  P   Q     
Sbjct: 150 HEDVPQAGSSQALENRRPKDMNHETPATTLKRRSPDDVDGRDMHRGSPKTPRIDQNKSTN 209

Query: 83  ---------------SRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMA 127
                          +R+ V+A S  ++  V DG QWRKYGQK+ K NP PRAY+RC+MA
Sbjct: 210 HEEQQNPHDQLPYRKARVSVRARSDATT--VNDGCQWRKYGQKMAKGNPCPRAYYRCTMA 267

Query: 128 SSGCPVKKKVQRCMEDKSFLVATYEGEHNH 157
             GCPV+K+VQRC ED + L  TYEG HNH
Sbjct: 268 -VGCPVRKQVQRCAEDTTILTTTYEGNHNH 296

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9F0|WRKY9_ARATH Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1

 Score =  101 bits (251), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 7/120 (5%)

Query: 81  KQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRC 140
           +++R+ V+A  + +++   DG QWRKYGQK  K NP PRAY+RC++A  GCPV+K+VQRC
Sbjct: 219 RKARVSVRARCETATM--NDGCQWRKYGQKTAKGNPCPRAYYRCTVAP-GCPVRKQVQRC 275

Query: 141 MEDKSFLVATYEGEHNH--DVQCSSLGQSSSLTNYCSPKSS--IVHCPDYQTTDSFGSDV 196
           +ED S L+ TYEG HNH   V  +++  ++S + +    SS  + H   YQT  +  S +
Sbjct: 276 LEDMSILITTYEGTHNHPLPVGATAMASTASTSPFLLLDSSDNLSHPSYYQTPQAIDSSL 335

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%), Gaps = 3/78 (3%)

Query: 80  AKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQR 139
            K++R+ V+  S+  +  + DG QWRKYGQK+ K NP PRAY+RC++A+S CPV+K+VQR
Sbjct: 174 VKKTRVSVR--SRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAAS-CPVRKQVQR 230

Query: 140 CMEDKSFLVATYEGEHNH 157
           C ED S L++TYEG HNH
Sbjct: 231 CSEDMSILISTYEGTHNH 248

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXG8|WRK72_ARATH Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 64/89 (71%), Gaps = 3/89 (3%)

Query: 81  KQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRC 140
           K++R+ V+A  +  +  + DG QWRKYGQK+ K NP PRAY+RC++A  GCPV+K+VQRC
Sbjct: 211 KRARVCVRA--RCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVA-PGCPVRKQVQRC 267

Query: 141 MEDKSFLVATYEGEHNHDVQCSSLGQSSS 169
            +D S L+ TYEG H+H +  S+   +S+
Sbjct: 268 ADDMSILITTYEGTHSHSLPLSATTMAST 296

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
147864790	259	hypothetical protein VITISV_036455 [Viti	0.922	0.918	0.480	9e-51
359476150	261	PREDICTED: WRKY transcription factor 18-	0.918	0.908	0.474	4e-47
296082063	262	unnamed protein product [Vitis vinifera]	0.918	0.904	0.478	4e-47
224141959	271	predicted protein [Populus trichocarpa]	0.883	0.841	0.476	3e-44
355398579	271	WRKY transcription factor [(Populus tome	0.891	0.848	0.453	9e-43
351724539	278	transcription factor [Glycine max] gi|16	0.875	0.812	0.434	2e-42
357437111	255	WRKY transcription factor [Medicago trun	0.875	0.886	0.426	1e-41
255639751	278	unknown [Glycine max]	0.875	0.812	0.434	2e-41
356552420	278	PREDICTED: probable WRKY transcription f	0.860	0.798	0.424	4e-41
356509880	261	PREDICTED: LOW QUALITY PROTEIN: probable	0.852	0.842	0.403	8e-38

>gi|147864790|emb|CAN84058.1| hypothetical protein VITISV_036455 [Vitis vinifera]

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 121/252 (48%), Positives = 159/252 (63%), Gaps = 14/252 (5%)

Query: 10  KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIGG 69
           K+++L+ +LE +RK+NE+LR  ++ M ++   L A + +   T S       ++N     
Sbjct: 12  KVEVLKIELERLRKENEDLRLXLEIMGSKYEVLQAHLQKNMATISPDHGSSXDSNKR--- 68

Query: 70  VTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASS 129
              +   V  AK S++FV+ + KD SL VKDG QWRKYGQK+TKDNPSPRAYFRCSMA  
Sbjct: 69  --PRTEEVSVAKASQVFVRTNPKDKSLTVKDGFQWRKYGQKITKDNPSPRAYFRCSMAPQ 126

Query: 130 GCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTT 189
            CPVKKKVQRC+ED S LVATYEG HNH+    +    SS +     K  + + P   T 
Sbjct: 127 -CPVKKKVQRCLEDSSILVATYEGAHNHEPPHDAPAGGSSYSPDSPIKGLVANFPCPTTV 185

Query: 190 DSFGSDVTLDLTLS--GSNQETRPPRNLMQVCDDKK----KIEEYVASLTKDPSFTIAVA 243
           D F   VTLDLTLS  G+ QE R P+N M+  D +K    ++EEYVASLTKD +FT+A+A
Sbjct: 186 DPFQPTVTLDLTLSGTGTGQENRRPQNFMK--DYRKSNCGRVEEYVASLTKDTNFTLALA 243

Query: 244 DAVASSINGPPH 255
            AVA SI   P+
Sbjct: 244 AAVARSITDQPN 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476150|ref|XP_002282812.2| PREDICTED: WRKY transcription factor 18-like [Vitis vinifera]

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/253 (47%), Positives = 159/253 (62%), Gaps = 16/253 (6%)

Query: 10  KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIGG 69
           K+++L+ +LE +RK+NE+LR  ++ M ++   L A + +   T S    H  + + N   
Sbjct: 12  KVEVLKIELERLRKENEDLRLGLEIMGSKYEVLQAHLQKNMATISPD--HGSSQDSNKRP 69

Query: 70  VTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASS 129
            T +V     AK S++FV+ + KD SL++KDG QWRKYGQK+TKDNPSPRAYFRCSMA  
Sbjct: 70  RTEEVS---VAKASQVFVRTNPKDKSLVMKDGFQWRKYGQKITKDNPSPRAYFRCSMAPQ 126

Query: 130 GCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTT 189
            CPVKKKVQRCMED S LVATYEG HNH+    +    SS +     K  + + P   T 
Sbjct: 127 -CPVKKKVQRCMEDSSILVATYEGAHNHEPPHDAPAGGSSYSPDSPIKGLVANFPCPTTV 185

Query: 190 DSFGSDVTLD----LTLSGSNQETRPPRNLMQVCDDKK----KIEEYVASLTKDPSFTIA 241
           D F   VTLD     T +G+ QE R P+N M+  D +K    ++EEYVASLTKD +FT+A
Sbjct: 186 DPFQPTVTLDLTLSGTGTGTGQEKRRPQNFME--DYRKSNCGRVEEYVASLTKDTNFTLA 243

Query: 242 VADAVASSINGPP 254
           +A AVA SI   P
Sbjct: 244 LAAAVARSITDQP 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082063|emb|CBI21068.3| unnamed protein product [Vitis vinifera]

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 121/253 (47%), Positives = 158/253 (62%), Gaps = 16/253 (6%)

Query: 10  KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIGG 69
           K+++L+ +LE +RK+NE+LR  ++ M ++   L A + +   T S    H  + + N   
Sbjct: 13  KVEVLKIELERLRKENEDLRLGLEIMGSKYEVLQAHLQKNMATISPD--HGSSQDSNKRP 70

Query: 70  VTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASS 129
            T +V     AK S++FV+ + KD SL VKDG QWRKYGQK+TKDNPSPRAYFRCSMA  
Sbjct: 71  RTEEVS---VAKASQVFVRTNPKDKSLTVKDGFQWRKYGQKITKDNPSPRAYFRCSMAPQ 127

Query: 130 GCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTT 189
            CPVKKKVQRCMED S LVATYEG HNH+    +    SS +     K  + + P   T 
Sbjct: 128 -CPVKKKVQRCMEDSSILVATYEGAHNHEPPHDAPAGGSSYSPDSPIKGLVANFPCPTTV 186

Query: 190 DSFGSDVTLD----LTLSGSNQETRPPRNLMQVCDDKK----KIEEYVASLTKDPSFTIA 241
           D F   VTLD     T +G+ QE R P+N M+  D +K    ++EEYVASLTKD +FT+A
Sbjct: 187 DPFQPTVTLDLTLSGTGTGTGQEKRRPQNFME--DYRKSNCGRVEEYVASLTKDTNFTLA 244

Query: 242 VADAVASSINGPP 254
           +A AVA SI   P
Sbjct: 245 LAAAVARSITDQP 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141959|ref|XP_002324328.1| predicted protein [Populus trichocarpa] gi|222865762|gb|EEF02893.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/260 (47%), Positives = 156/260 (60%), Gaps = 32/260 (12%)

Query: 1   MDSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN----RTYSS- 55
           MD   S KEK++ LQ +LEH +K+NE+LR ++  M  + + L A I E      +T S+ 
Sbjct: 1   MDVFPSCKEKVEALQFELEHRQKENESLRFMLGVMTRRFSILQAEIQETEEHQQKTASNL 60

Query: 56  SDHHHFNNNINIGGVTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDN 115
           +D     + I      A+   VP  K SRI V++ S D SLIVKDG+QWRKYGQKVTKDN
Sbjct: 61  ADGDQACHEILDSNKRARFE-VPITKASRILVRSHSNDKSLIVKDGYQWRKYGQKVTKDN 119

Query: 116 PSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCS 175
           PSPRAYFRCSMA + CPVKKKVQRC+ED S LVA+Y+GEHNH+    S GQ       CS
Sbjct: 120 PSPRAYFRCSMAPN-CPVKKKVQRCVEDDSVLVASYDGEHNHEPN-GSHGQY-----LCS 172

Query: 176 PKSS---------IVHCPDYQTTDSFGSDVTLDLTLSG-SNQETR-PPRNLMQVCD---- 220
           P +S         ++ CP           + LDLTLS  SNQ+   P +  M+ C     
Sbjct: 173 PHTSSSKISITNHVLKCPI--EIPPLQPSIALDLTLSSPSNQQKENPSKRSMEDCGKINN 230

Query: 221 --DKKKIEEYVASLTKDPSF 238
             +K  IEEYVASLTKDP+F
Sbjct: 231 NCNKNYIEEYVASLTKDPTF 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355398579|gb|AER70306.1| WRKY transcription factor [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 117/258 (45%), Positives = 152/258 (58%), Gaps = 28/258 (10%)

Query: 1   MDSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE---------ANR 51
           MD   S KEK++ L+ +LEH +K+NE LR +++ M  + + L A I E         +N 
Sbjct: 1   MDVFPSCKEKVEALRFELEHRQKENEKLRFMLEVMTRRFSILQAEIQETEEHQQKAASNL 60

Query: 52  TYSSSDHHHFNNNINIGGVTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKV 111
           T      H   ++            VP  K SRI V++ S D SLIVKDG+QWRKYGQKV
Sbjct: 61  TEGDQACHEILDSNKRARFE-----VPITKASRILVRSHSNDKSLIVKDGYQWRKYGQKV 115

Query: 112 TKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSS---LGQSS 168
           TKDNPSPRAYFRCSMA + CPVKKKVQRC++D S LVATY+GEHNH+   S    L   +
Sbjct: 116 TKDNPSPRAYFRCSMAPN-CPVKKKVQRCVDDDSVLVATYDGEHNHEPNGSHGHYLCSPN 174

Query: 169 SLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLS--GSNQETRPPRNLMQVCD------ 220
           S ++  S  + ++ CP           + LDLTLS   + QE +P +  M+ C       
Sbjct: 175 SSSSKISITNHVLKCP--IEIPPLQPSIALDLTLSSPSNQQEEKPSKRSMEDCGKINNNH 232

Query: 221 DKKKIEEYVASLTKDPSF 238
           +K  IEEYVASLTKDP+F
Sbjct: 233 NKNYIEEYVASLTKDPNF 250

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724539|ref|NP_001237573.1| transcription factor [Glycine max] gi|166203234|gb|ABY84657.1| transcription factor [Glycine max]

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/267 (43%), Positives = 158/267 (59%), Gaps = 41/267 (15%)

Query: 9   EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIG 68
           EK++ L+A+L+ VR++N  LR +++ +N++C  L   + + N+    + H   ++N  IG
Sbjct: 14  EKVETLKAELQRVREENNTLRLMLEVLNSKCTKLEIHLQDINK----AQHKGMSSN-QIG 68

Query: 69  GVTAQVPP-----------VPNAKQS-RIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNP 116
            VT  VPP           +P AK+  +IFV+   KD SLIVKDG+QWRKYGQKVTKDN 
Sbjct: 69  SVT--VPPMFDTNKRPRLELPTAKKPLQIFVRTHPKDDSLIVKDGYQWRKYGQKVTKDNA 126

Query: 117 SPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSP 176
           SPRAYFRC MA   CP KKKVQRC+ DKS LVA Y+GEH+H      L +SSS T   S 
Sbjct: 127 SPRAYFRCYMAPI-CPAKKKVQRCLHDKSILVAIYDGEHSH----GPLDESSSSTPKGSS 181

Query: 177 KSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDD-----------KKKI 225
             +    P   +  +    + +DL LSG +Q  R      + C+D             KI
Sbjct: 182 PVANNKLPLMTSVPNDKEAMNIDLALSGWSQTDR------RHCEDVMQQNNNNGGSNIKI 235

Query: 226 EEYVASLTKDPSFTIAVADAVASSING 252
           EEYV+SL KDP FT+++A+AVA +I G
Sbjct: 236 EEYVSSLIKDPDFTMSLAEAVARTITG 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437111|ref|XP_003588831.1| WRKY transcription factor [Medicago truncatula] gi|355477879|gb|AES59082.1| WRKY transcription factor [Medicago truncatula]

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/258 (42%), Positives = 152/258 (58%), Gaps = 32/258 (12%)

Query: 9   EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH----EANRTYSSSDHHHFNNN 64
           EK++ L+ +L+ VR++N  LR +++ M+ +C  L + +     E +R   SS+H    + 
Sbjct: 7   EKVETLELELQQVREENNTLRFMLEVMSIKCTKLESHLQDIKKEEHRGIISSNHQ-IESI 65

Query: 65  INIGGVTAQVPPVPNAKQS-RIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFR 123
            NI          P A++  ++FV+    D SLI+KDG+QWRKYGQKVTKDN SPRAYFR
Sbjct: 66  PNIDSSKRARLEFPTAQKPLQVFVRTQPNDESLIIKDGYQWRKYGQKVTKDNASPRAYFR 125

Query: 124 CSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHC 183
           CSMA S CP KKKVQ+C+ D+S LVATY+GEH+H V   S   SSS     +PK      
Sbjct: 126 CSMAPS-CPAKKKVQKCIHDRSILVATYDGEHSHGVPNESFKPSSS-----TPK------ 173

Query: 184 PDYQTTDSFGSDVTLDLTLSGSNQE---TRPPRNLMQVCDDKK--KIEEYVASLTKDPSF 238
                    GS ++  L    S++E   TR   N+MQ    ++  KIEEY +SL KDP F
Sbjct: 174 ---------GSSISNKLPTRLSDKEAISTRICENVMQQFGVERHIKIEEYASSLIKDPDF 224

Query: 239 TIAVADAVASSINGPPHR 256
           T A+A+AVA +I    H+
Sbjct: 225 TAALAEAVARTITDQEHK 242

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639751|gb|ACU20169.1| unknown [Glycine max]

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/267 (43%), Positives = 157/267 (58%), Gaps = 41/267 (15%)

Query: 9   EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIG 68
           EK++ ++A+L+ VR++N  LR +++ ++++   L   + E N+T     H   ++N  IG
Sbjct: 14  EKVETIKAELKRVREENNTLRMMLEVLSSKYTKLETHLQEINKT----QHKGMSSN-QIG 68

Query: 69  GVTAQVPPV-----------PNAKQS-RIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNP 116
            VT  VPP+           P AK+  +IFVK   KD SLIVKDG+QWRKYGQKVTKDN 
Sbjct: 69  SVT--VPPMFQTNKRPRLEFPTAKKPLQIFVKTHPKDDSLIVKDGYQWRKYGQKVTKDNA 126

Query: 117 SPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSP 176
           SPRAYFRC MA   CP KKKVQRC+ DKS LVA Y+GEH+H      L +SSS T   S 
Sbjct: 127 SPRAYFRCYMAPI-CPAKKKVQRCLHDKSILVAIYDGEHSH----GPLDESSSSTPKGSS 181

Query: 177 KSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDD-----------KKKI 225
             +    P   +  +    + +DL LSG +Q  R      + C+D             KI
Sbjct: 182 PVANNKLPLMTSVPNDKEAMNIDLALSGWSQTDR------RHCEDVMQQNNNNGGSNIKI 235

Query: 226 EEYVASLTKDPSFTIAVADAVASSING 252
           EEYV+SL KDP FT+++A+AVA +I G
Sbjct: 236 EEYVSSLIKDPDFTMSLAEAVARTITG 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552420|ref|XP_003544566.1| PREDICTED: probable WRKY transcription factor 40-like [Glycine max]

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/271 (42%), Positives = 162/271 (59%), Gaps = 49/271 (18%)

Query: 9   EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIG 68
           EK++ L+A+L+ VR++N  LR +++ +N++C  L   + E N+    + H   ++N  IG
Sbjct: 14  EKVETLKAELQRVREENNTLRLMLEVLNSKCTKLEIHLQEINK----AQHKGMSSN-QIG 68

Query: 69  GVTAQVPP-----------VPNAKQS-RIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNP 116
            VT  VPP           +P AK+  +IFV+   KD SLIVKDG+QWRKYGQKVTKDN 
Sbjct: 69  SVT--VPPMFDTNKRPRLELPTAKKPLQIFVRTHPKDDSLIVKDGYQWRKYGQKVTKDNA 126

Query: 117 SPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHN----HDVQCSSLGQSSSLTN 172
           SPRAYFRCSMA   CPVKKKVQRC+ DKS +VATY+GEHN    H+   S+   SS + N
Sbjct: 127 SPRAYFRCSMAPM-CPVKKKVQRCLHDKSIVVATYDGEHNHAAIHESSSSTSKGSSPVVN 185

Query: 173 YCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDDKK--------- 223
                +SI++  +          + + L LSG +Q T   R+    C+D           
Sbjct: 186 NLPLMTSILNDKE---------PMNIGLALSGWSQ-TDHRRH----CEDAMQQNNNNGGS 231

Query: 224 --KIEEYVASLTKDPSFTIAVADAVASSING 252
             +IEEYV+SL K+P F++++A+AV  +I G
Sbjct: 232 NIRIEEYVSSLIKNPDFSMSLAEAVVRTITG 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509880|ref|XP_003523671.1| PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 40-like [Glycine max]

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 105/260 (40%), Positives = 153/260 (58%), Gaps = 40/260 (15%)

Query: 9   EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIG 68
           ++++ L+AKL+ V++ N  LR +++ ++++C  L + + E N    + +      +   G
Sbjct: 3   QEVETLEAKLQRVKEDNRTLRVMLETLSSKCEKLQSHLQEIN----NEEQQVGTKSDQSG 58

Query: 69  GVTAQVPPVPNA-KQSRIFVKADSKDSSLIVKDGHQWRKYGQK-VTKDNPSPRAYFRCSM 126
            V    P    A K S+IF K   KD+SL+VKDG+QW+KYGQK VTKDNPSPRAYF+CS+
Sbjct: 59  SVLLARPEFSMAQKPSQIFFKTHPKDNSLMVKDGYQWKKYGQKKVTKDNPSPRAYFKCSL 118

Query: 127 ASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIV----- 181
           A S CPVKK+VQR ++DKS LVATYEG+HNH V    L  SSS+     P++SI+     
Sbjct: 119 APS-CPVKKRVQRSIQDKSILVATYEGKHNHGVFHDLLKPSSSI-----PETSIMINNLP 172

Query: 182 --HCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDD---------KKKIEEYVA 230
             + P+ + T      V +DL L   +Q        +++CDD         K KIE Y +
Sbjct: 173 MTNMPNDKDT------VNIDLALCNWDQTD------IRLCDDVKQQNDRGSKSKIEGYAS 220

Query: 231 SLTKDPSFTIAVADAVASSI 250
            L KDP F + +A+AV  S+
Sbjct: 221 PLVKDPDFIMPLAEAVVHSL 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
TAIR|locus:2124874	310	WRKY18 "WRKY DNA-binding prote	0.461	0.383	0.532	1.1e-33
TAIR|locus:2025687	302	WRKY40 "WRKY DNA-binding prote	0.682	0.582	0.446	5.2e-33
TAIR|locus:2047395	271	WRKY60 "WRKY DNA-binding prote	0.620	0.590	0.396	2.6e-32
TAIR|locus:2133432	489	WRKY47 [Arabidopsis thaliana (	0.333	0.175	0.528	2.9e-32
UNIPROTKB|Q6IEL0	348	WRKY71 "Transcription factor W	0.635	0.471	0.441	2.7e-29
TAIR|locus:2137179	528	WRKY42 [Arabidopsis thaliana (	0.383	0.187	0.480	8e-28
TAIR|locus:2018052	553	WRKY6 [Arabidopsis thaliana (t	0.341	0.159	0.516	1.5e-27
TAIR|locus:2034964	480	WRKY61 "WRKY DNA-binding prote	0.534	0.287	0.4	5.4e-27
TAIR|locus:2120623	538	WRKY31 "WRKY DNA-binding prote	0.341	0.163	0.516	2.4e-26
TAIR|locus:2150876	548	WRKY72 "WRKY DNA-binding prote	0.341	0.160	0.483	8.5e-26

TAIR|locus:2124874 WRKY18 "WRKY DNA-binding protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
 Identities = 66/124 (53%), Positives = 80/124 (64%)

Query:    50 NRTYSSSDHHHFXXXXXXXXVTAQVPPVPN----AKQSRIFVKADSKDSSLIVKDGHQWR 105
             N + +   HHH         + +   PV +    AK S ++V  ++ D+SL VKDG QWR
Sbjct:   123 NSSSNEDHHHHHQQHEQKNQLLSCKRPVTDSFNKAKVSTVYVPTETSDTSLTVKDGFQWR 182

Query:   106 KYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLG 165
             KYGQKVT+DNPSPRAYFRCS A S CPVKKKVQR  ED S LVATYEG HNH    +S G
Sbjct:   183 KYGQKVTRDNPSPRAYFRCSFAPS-CPVKKKVQRSAEDPSLLVATYEGTHNHLGPNASEG 241

Query:   166 QSSS 169
              ++S
Sbjct:   242 DATS 245

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=IEP

GO:0050691 "regulation of defense response to virus by host" evidence=IGI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=IMP

TAIR|locus:2025687 WRKY40 "WRKY DNA-binding protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 80/179 (44%), Positives = 108/179 (60%)

Query:    77 VPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKK 136
             V   K SR++ K ++ D++L+VKDG+QWRKYGQKVT+DNPSPRAYF+C+ A S C VKKK
Sbjct:   124 VVKEKVSRVYYKTEASDTTLVVKDGYQWRKYGQKVTRDNPSPRAYFKCACAPS-CSVKKK 182

Query:   137 VQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDV 196
             VQR +ED+S LVATYEGEHNH +  S +  ++ L  + S   S           S    V
Sbjct:   183 VQRSVEDQSVLVATYEGEHNHPMP-SQIDSNNGLNRHISHGGSASTPVAANRRSSLTVPV 241

Query:   197 TLDLTLSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSINGPPH 255
             T  + +  S + T P   +      K  +E+  +SLTKDP+FT A+A AV   +    H
Sbjct:   242 TT-VDMIESKKVTSPTSRIDFPQVQKLLVEQMASSLTKDPNFTAALAAAVTGKLYQQNH 299

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0050832 "defense response to fungus" evidence=IEP;RCA

GO:0050691 "regulation of defense response to virus by host" evidence=IGI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

TAIR|locus:2047395 WRKY60 "WRKY DNA-binding protein 60" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
 Identities = 71/179 (39%), Positives = 99/179 (55%)

Query:     9 EKMKLLQAKLEHVRKQNENLRHLVK-------AMNNQCNDLLAR-----IHEANRTYSSS 56
             EK  +LQ ++  V  +N+ L  ++        A+NN   +L +R     ++  N+  +  
Sbjct:    40 EKRNMLQDEINRVNSENKKLTEMLARVCEKYYALNNLMEELQSRKSPESVNFQNKQLTGK 99

Query:    57 DHHHFXXXXXXXXVTAQVPPVPN-----AKQSRIFVKADSKDSSLIVKDGHQWRKYGQKV 111
                          +   + P+ N     A  S  +  A+  D+SL VKDG+QWRKYGQK+
Sbjct:   100 RKQELDEFVSSP-IGLSLGPIENITNDKATVSTAYFAAEKSDTSLTVKDGYQWRKYGQKI 158

Query:   112 TKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSL 170
             T+DNPSPRAYFRCS + S C VKKKVQR  ED SFLVATYEG HNH    +S+ ++  L
Sbjct:   159 TRDNPSPRAYFRCSFSPS-CLVKKKVQRSAEDPSFLVATYEGTHNHTGPHASVSRTVKL 216

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=IEP;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

TAIR|locus:2133432 WRKY47 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 2.9e-32, Sum P(3) = 2.9e-32
 Identities = 47/89 (52%), Positives = 65/89 (73%)

Query:    81 KQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRC 140
             +++R+ V+A S D++  V DG QWRKYGQK+ K NP PRAY+RC+MA  GCPV+K+VQRC
Sbjct:   223 RKARVSVRARS-DATT-VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAV-GCPVRKQVQRC 279

Query:   141 MEDKSFLVATYEGEHNHDVQCSSLGQSSS 169
              ED + L  TYEG HNH +  S+   +++
Sbjct:   280 AEDTTILTTTYEGNHNHPLPPSATAMAAT 308

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|Q6IEL0 WRKY71 "Transcription factor WRKY71" [Oryza sativa Indica Group (taxid:39946)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 76/172 (44%), Positives = 100/172 (58%)

Query:    81 KQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRC 140
             K S+++V AD  D SL+VKDG+QWRKYGQKVTKDNP PRAYFRCS A + CPVKKKVQR 
Sbjct:   175 KISKLYVHADPSDLSLVVKDGYQWRKYGQKVTKDNPCPRAYFRCSFAPA-CPVKKKVQRS 233

Query:   141 MEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSS--IVHCPDYQTTDSFGSDVTL 198
              ED + LVATYEGEHNH      L QS++  +  S KS+    H P              
Sbjct:   234 AEDNTILVATYEGEHNHGQPPPPL-QSAAQNSDGSGKSAGKPPHAPAAAPPAPVVPHRQH 292

Query:   199 DLTLSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSI 250
             +  +    Q+      +++    +   E+   +LT+DPSF  A+  A++  I
Sbjct:   293 EPVVVNGEQQAAAASEMIR----RNLAEQMAMTLTRDPSFKAALVTALSGRI 340

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006952 "defense response" evidence=IMP

GO:0009685 "gibberellin metabolic process" evidence=IEP

TAIR|locus:2137179 WRKY42 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 8.0e-28, Sum P(3) = 8.0e-28
 Identities = 49/102 (48%), Positives = 69/102 (67%)

Query:    70 VTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASS 129
             V  Q       +++R+ V+A S+   L   DG QWRKYGQK+ K NP PRAY+RC+MA  
Sbjct:   265 VIEQAAAEATMRKARVSVRARSEAPML--SDGCQWRKYGQKMAKGNPCPRAYYRCTMAV- 321

Query:   130 GCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLT 171
             GCPV+K+VQRC ED++ L+ TYEG HNH +  +++  +S+ T
Sbjct:   322 GCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTTT 363

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2018052 WRKY6 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
 Identities = 47/91 (51%), Positives = 70/91 (76%)

Query:    81 KQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRC 140
             +++R+ V+A S+  + ++ DG QWRKYGQK+ K NP PRAY+RC+MA+ GCPV+K+VQRC
Sbjct:   296 RKARVSVRARSE--APMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAT-GCPVRKQVQRC 352

Query:   141 MEDKSFLVATYEGEHNHDVQCSSLGQSSSLT 171
              ED+S L+ TYEG HNH +  +++  +S+ T
Sbjct:   353 AEDRSILITTYEGNHNHPLPPAAVAMASTTT 383

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0080169 "cellular response to boron-containing substance deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2034964 WRKY61 "WRKY DNA-binding protein 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 5.4e-27, Sum P(2) = 5.4e-27
 Identities = 58/145 (40%), Positives = 87/145 (60%)

Query:    73 QVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCP 132
             ++ P    K++R+ V+  S+  +  + DG QWRKYGQK+ K NP PRAY+RC++A+S CP
Sbjct:   167 EILPQNLVKKTRVSVR--SRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAAS-CP 223

Query:   133 VKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSF 192
             V+K+VQRC ED S L++TYEG HNH +  S+   +S+ +   S   S          D  
Sbjct:   224 VRKQVQRCSEDMSILISTYEGTHNHPLPMSATAMASATSAAASMLLSGASSSSSAAADLH 283

Query:   193 GSDVTLDLTLSGSNQETRPPRNLMQ 217
             G    L+ +LSG+N   +P  + +Q
Sbjct:   284 G----LNFSLSGNNITPKPKTHFLQ 304

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010043 "response to zinc ion" evidence=RCA

TAIR|locus:2120623 WRKY31 "WRKY DNA-binding protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
 Identities = 47/91 (51%), Positives = 68/91 (74%)

Query:    81 KQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRC 140
             +++R+ V+A S+  + ++ DG QWRKYGQK+ K NP PRAY+RC+MA  GCPV+K+VQRC
Sbjct:   281 RKARVSVRARSE--AAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAG-GCPVRKQVQRC 337

Query:   141 MEDKSFLVATYEGEHNHDVQCSSLGQSSSLT 171
              ED+S L+ TYEG HNH +  ++   +S+ T
Sbjct:   338 AEDRSILITTYEGNHNHPLPPAATAMASTTT 368

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2150876 WRKY72 "WRKY DNA-binding protein 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 8.5e-26, Sum P(3) = 8.5e-26
 Identities = 44/91 (48%), Positives = 64/91 (70%)

Query:    79 NAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQ 138
             + K++R+ V+A     ++   DG QWRKYGQK+ K NP PRAY+RC++A  GCPV+K+VQ
Sbjct:   209 HVKRARVCVRARCDTPTM--NDGCQWRKYGQKIAKGNPCPRAYYRCTVAP-GCPVRKQVQ 265

Query:   139 RCMEDKSFLVATYEGEHNHDVQCSSLGQSSS 169
             RC +D S L+ TYEG H+H +  S+   +S+
Sbjct:   266 RCADDMSILITTYEGTHSHSLPLSATTMAST 296

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006952 "defense response" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XVIII000488 hypothetical protein (271 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	258
smart00774	59	smart00774, WRKY, DNA binding domain	5e-29
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-27

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  103 bits (260), Expect = 5e-29
 Identities = 35/60 (58%), Positives = 44/60 (73%), Gaps = 1/60 (1%)

Query: 98  VKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNH 157
           + DG+QWRKYGQKV K +P PR+Y+RC+    GCP KK+VQR  +D S +  TYEGEH H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYT-QGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =   99 bits (250), Expect = 2e-27
 Identities = 34/61 (55%), Positives = 44/61 (72%), Gaps = 2/61 (3%)

Query: 98  VKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNH 157
           + DG+ WRKYGQK  K +P PR+Y+RC+  S GCPVKK+V+R  +D   +  TYEGEHNH
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCT--SPGCPVKKQVERSSDDPQIVEITYEGEHNH 58

Query: 158 D 158
            
Sbjct: 59  P 59

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.97
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.97
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	95.76
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	91.43
COG4026	290	Uncharacterized protein containing TOPRIM domain,	90.21
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	88.37
PHA03162	135	hypothetical protein; Provisional	85.85
PHA03155	115	hypothetical protein; Provisional	85.12
PF04201	162	TPD52: Tumour protein D52 family; InterPro: IPR007	84.39
PF08650	72	DASH_Dad4: DASH complex subunit Dad4; InterPro: IP	83.17
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	81.0
smart00338	65	BRLZ basic region leucin zipper.	80.93
PF05812	118	Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro:	80.84
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	80.41

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.97  E-value=5.9e-33  Score=203.51  Aligned_cols=59  Identities=56%  Similarity=1.141  Sum_probs=52.2

Q ss_pred             ccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCCC
Q 025097           98 VKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHD  158 (258)
Q Consensus        98 ~~DGy~WRKYGQK~ikgn~~PRsYYRCs~~~~gC~akK~VQr~~~D~~~~~~tY~G~HnH~  158 (258)
                      ++|||+|||||||.|+|+++||+||||++.  +|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~--~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP--GCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECT--TEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeecccc--ChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            589999999999999999999999999997  79999999999999999999999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.97  E-value=6.9e-32  Score=197.90  Aligned_cols=59  Identities=59%  Similarity=1.133  Sum_probs=56.1

Q ss_pred             ccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCC
Q 025097           98 VKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNH  157 (258)
Q Consensus        98 ~~DGy~WRKYGQK~ikgn~~PRsYYRCs~~~~gC~akK~VQr~~~D~~~~~~tY~G~HnH  157 (258)
                      ++|||+|||||||.|+|+++||+||||++.+ ||+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~-~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQ-GCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccC-CCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            4799999999999999999999999999943 6999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.76  E-value=0.009  Score=41.44  Aligned_cols=52  Identities=33%  Similarity=0.569  Sum_probs=28.3

Q ss_pred             ccccCCccccccCccccCCCCCCcceeecccCCC-CCcccccceeecCCCcEEEEEeccccCC
Q 025097           96 LIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASS-GCPVKKKVQRCMEDKSFLVATYEGEHNH  157 (258)
Q Consensus        96 ~~~~DGy~WRKYGQK~ikgn~~PRsYYRCs~~~~-gC~akK~VQr~~~D~~~~~~tY~G~HnH  157 (258)
                      .++-|||.-.++...      ....|+||+.... +|+|+-.+.  .++. .+. ...++|||
T Consensus        10 ~L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~~~-~~~~~HnH   62 (62)
T PF04500_consen   10 KLVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-RVV-RTNGEHNH   62 (62)
T ss_dssp             EEEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-EEE-E-S---SS
T ss_pred             EEEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-EEE-ECCCccCC
Confidence            467899987766655      3468999998753 799987777  3344 333 44499998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=91.43  E-value=0.29  Score=36.78  Aligned_cols=31  Identities=32%  Similarity=0.581  Sum_probs=26.7

Q ss_pred             CCCcccccceeecCCCcEEEEEeccccCCCCC
Q 025097          129 SGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQ  160 (258)
Q Consensus       129 ~gC~akK~VQr~~~D~~~~~~tY~G~HnH~~p  160 (258)
                      .||+|+=.|-+.. |....++.+..+|||+.-
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~   90 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLC   90 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence            3799999998876 778889999999999974

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=90.21  E-value=0.69  Score=43.18  Aligned_cols=43  Identities=21%  Similarity=0.355  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097            9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR   51 (258)
Q Consensus         9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~   51 (258)
                      -+++.++++|.++..||-+|.+|+..+...|..|..+|.++-.
T Consensus       163 ~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~  205 (290)
T COG4026         163 AEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP  205 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence            3556778888888889999999999999999999999988854

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=88.37  E-value=2.4  Score=30.77  Aligned_cols=40  Identities=20%  Similarity=0.370  Sum_probs=35.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097            7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI   46 (258)
Q Consensus         7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l   46 (258)
                      +...++.|+.++..+..||..|..-+..+...+..|...+
T Consensus        24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen   24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4567889999999999999999999999999999998764

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PHA03162 hypothetical protein; Provisional

Probab=85.85  E-value=0.97  Score=38.70  Aligned_cols=30  Identities=20%  Similarity=0.343  Sum_probs=27.1

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097            4 HNSPKEKMKLLQAKLEHVRKQNENLRHLVK   33 (258)
Q Consensus         4 ~~~~eee~~~L~~EL~rv~eEN~rL~~mL~   33 (258)
                      -|++...++.|++||.+++-||+.|+.-|.
T Consensus         8 ~pk~~~tmEeLaaeL~kLqmENK~LKkkl~   37 (135)
T PHA03162          8 CPKAQPTMEDLAAEIAKLQLENKALKKKIK   37 (135)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478888999999999999999999998873

>PHA03155 hypothetical protein; Provisional

Probab=85.12  E-value=1.2  Score=37.18  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=26.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097            1 MDSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKA   34 (258)
Q Consensus         1 ~~~~~~~eee~~~L~~EL~rv~eEN~rL~~mL~~   34 (258)
                      |++-| .+..++.|++||.|++-||+.|+.-|.+
T Consensus         1 mas~~-~~~tvEeLaaeL~kL~~ENK~LKkkl~~   33 (115)
T PHA03155          1 MASGR-ACADVEELEKELQKLKIENKALKKKLLQ   33 (115)
T ss_pred             CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44444 4566899999999999999999988753

>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma

Probab=84.39  E-value=3.1  Score=36.71  Aligned_cols=40  Identities=23%  Similarity=0.491  Sum_probs=36.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097            7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI   46 (258)
Q Consensus         7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l   46 (258)
                      .+++-+.|+.||.+|.+|-..|+..|.+-...+..|+..|
T Consensus        27 sEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL   66 (162)
T PF04201_consen   27 SEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL   66 (162)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            5778899999999999999999999999988888888875

Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].

>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []

Probab=83.17  E-value=1.9  Score=33.29  Aligned_cols=39  Identities=23%  Similarity=0.362  Sum_probs=32.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 025097            7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCND-LLARI   46 (258)
Q Consensus         7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~-Lq~~l   46 (258)
                      ..+.+..|-.+|+++...|..| +++.+|+++|.. .+-+|
T Consensus        23 LNEsv~~lN~~l~eIn~~N~~l-e~~~qm~enY~~nv~fnL   62 (72)
T PF08650_consen   23 LNESVAELNQELEEINRANKNL-EIVAQMWENYQRNVQFNL   62 (72)
T ss_pred             HHHHHHHHHHHHHHHHHccccH-HHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999 899999999953 44443

In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=81.00  E-value=10  Score=27.99  Aligned_cols=44  Identities=20%  Similarity=0.446  Sum_probs=31.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097            8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT   52 (258)
Q Consensus         8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~   52 (258)
                      +.++..+..++.-++.||+.|++-|+.+.++-..|=. |.+++.+
T Consensus         6 En~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~-lYE~Vs~   49 (55)
T PF05377_consen    6 ENELPRIESSINTVKKENEEISESVEKIEENVKDLLS-LYEVVSN   49 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHc
Confidence            5567777778888888888888888888877766644 4444444

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>smart00338 BRLZ basic region leucin zipper

Probab=80.93  E-value=6.9  Score=28.32  Aligned_cols=40  Identities=20%  Similarity=0.419  Sum_probs=34.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097            7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI   46 (258)
Q Consensus         7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l   46 (258)
                      +...+..|+.++..+..||..|..-++.+...+..|..++
T Consensus        24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338       24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566789999999999999999999999888888887654

>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins

Probab=80.84  E-value=2.8  Score=35.22  Aligned_cols=28  Identities=21%  Similarity=0.385  Sum_probs=23.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097            7 PKEKMKLLQAKLEHVRKQNENLRHLVKA   34 (258)
Q Consensus         7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~   34 (258)
                      ++-.++.|.+||.+++-||+.|+.-|..
T Consensus         1 k~~t~EeLaaeL~kLqmENk~LKkkl~~   28 (118)
T PF05812_consen    1 KDMTMEELAAELQKLQMENKALKKKLRQ   28 (118)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3556899999999999999999977654

; PDB: 2OA5_B 2H3R_D.

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=80.41  E-value=5.2  Score=34.34  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097           12 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH   47 (258)
Q Consensus        12 ~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~   47 (258)
                      ..|..||+++.+||-+|..-|+....+|.+|+.-.+
T Consensus        84 ~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~  119 (135)
T KOG4196|consen   84 AELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV  119 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            468999999999999999999999999999998655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		5e-17
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		1e-15

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Query: 97  IVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHN 156
           IV DG++WRKYGQK  K +P PR+Y+RCS  S GCPVKK V+R   D   L+ TYEG+H+
Sbjct: 13  IVNDGYRWRKYGQKSVKGSPYPRSYYRCS--SPGCPVKKHVERSSHDTKLLITTYEGKHD 70
Query: 157 HDV 159
           HD+
Sbjct: 71  HDM 73

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Query: 97  IVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHN 156
           ++ DG++WRKYGQKV K NP PR+Y++C+  + GC V+K V+R   D   +V TYEG+HN
Sbjct: 16  LLDDGYRWRKYGQKVVKGNPYPRSYYKCT--TPGCGVRKHVERAATDPKAVVTTYEGKHN 73
Query: 157 HDV 159
           HD+
Sbjct: 74  HDL 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	2e-33
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	7e-33
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  115 bits (289), Expect = 2e-33
 Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 4/80 (5%)

Query: 80  AKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQR 139
                  V+  S+    ++ DG++WRKYGQKV K NP PR+Y++C+  + GC V+K V+R
Sbjct: 1   GSSGSSGVQTTSEVD--LLDDGYRWRKYGQKVVKGNPYPRSYYKCT--TPGCGVRKHVER 56

Query: 140 CMEDKSFLVATYEGEHNHDV 159
              D   +V TYEG+HNHD+
Sbjct: 57  AATDPKAVVTTYEGKHNHDL 76

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  114 bits (286), Expect = 7e-33
 Identities = 41/77 (53%), Positives = 52/77 (67%), Gaps = 4/77 (5%)

Query: 83  SRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCME 142
           SRI V   +     IV DG++WRKYGQK  K +P PR+Y+RCS  S GCPVKK V+R   
Sbjct: 1   SRIVVHTQTLFD--IVNDGYRWRKYGQKSVKGSPYPRSYYRCS--SPGCPVKKHVERSSH 56

Query: 143 DKSFLVATYEGEHNHDV 159
           D   L+ TYEG+H+HD+
Sbjct: 57  DTKLLITTYEGKHDHDM 73

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 47/343 (13%), Positives = 85/343 (24%), Gaps = 113/343 (32%)

Query: 2   DSHNSPKEKMKLLQAKLEH--VRKQNEN----LRH-----LVKAMNNQCNDLL------- 43
           D  ++ K ++  +QA+L      K  EN    L +        A N  C  LL       
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 44  -ARIHEANRTYSSSDHHH-----------FNNNINIGGVTAQVPPVPNAKQSRIFVKADS 91
              +  A  T+ S DHH                ++       +P       +        
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--PQDLPRE--VLTTNPRR---- 329

Query: 92  KDSSLI---VKDGH----QWRKYGQ-KVTK------DNPSP---RAYFR-CSMASSGCPV 133
              S+I   ++DG      W+     K+T       +   P   R  F   S+      +
Sbjct: 330 --LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 134 KKKV---------QRCMED------KSFLVATYEGEHN---HDVQCSSLGQSSSLT---- 171
              +         +  +        K  LV     E       +      +  +      
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 172 ----------NYCSPKSSIVHCPDY---------------QTTDSFGSDVTLDL-----T 201
                      + S      +   Y               +    F   V LD       
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-RMVFLDFRFLEQK 506

Query: 202 LSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVAD 244
           +   +       +++      K  + Y+     DP +   V  
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICD--NDPKYERLVNA 547

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	91.4
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	87.8
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	87.42
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	84.87
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	83.17
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	82.87
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	81.34
1wrd_A	103	TOM1, target of MYB protein 1; three-helix bundle,	81.32
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	80.07

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=9.4e-36  Score=226.94  Aligned_cols=75  Identities=53%  Similarity=0.983  Sum_probs=70.1

Q ss_pred             ceEEEecccCCccccccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCCCCCC
Q 025097           83 SRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQC  161 (258)
Q Consensus        83 ~rv~v~~~~~d~s~~~~DGy~WRKYGQK~ikgn~~PRsYYRCs~~~~gC~akK~VQr~~~D~~~~~~tY~G~HnH~~p~  161 (258)
                      +||.|++.++  ..+++|||+|||||||.|+|+++||+||||++.  ||+|+|+|||+++|+.+++|||+|+|||+.|.
T Consensus         1 ~r~~v~t~~~--~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~--gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTL--FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP--GCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECS--SSCCCCSSCEEEEEEECCTTCSSCEEEEEECST--TCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCC--CCcCCCCchhhhCcccccCCCCCceeEeEcCCC--CCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            5899999875  468899999999999999999999999999985  79999999999999999999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=7.2e-35  Score=223.03  Aligned_cols=74  Identities=47%  Similarity=0.903  Sum_probs=66.3

Q ss_pred             eEEEecccCCccccccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCCCCCC
Q 025097           84 RIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQC  161 (258)
Q Consensus        84 rv~v~~~~~d~s~~~~DGy~WRKYGQK~ikgn~~PRsYYRCs~~~~gC~akK~VQr~~~D~~~~~~tY~G~HnH~~p~  161 (258)
                      +|.|++.++  ..+++|||+|||||||.|+|+++||+||||++.  ||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         5 ~~~~~t~s~--~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~--gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            5 SSGVQTTSE--VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP--GCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ---CCCCCC--CCCCCSSSCBCCCEEECCTTCSSCEEEEEEECS--SCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             eEEEeccCC--CCcCCCCchhhhCcccccCCCcCeeEEeecCcC--CCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            677888875  367899999999999999999999999999995  79999999999999999999999999999874

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=91.40  E-value=0.82  Score=32.06  Aligned_cols=42  Identities=17%  Similarity=0.277  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097            8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA   49 (258)
Q Consensus         8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~   49 (258)
                      ++.+..|+.++..+.+-|.+|.++|..-...-..|..+|..+
T Consensus         8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L   49 (51)
T 3m91_A            8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL   49 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            677788999999999999999999999999999999988776

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=87.80  E-value=0.76  Score=35.03  Aligned_cols=28  Identities=14%  Similarity=0.399  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097           10 KMKLLQAKLEHVRKQNENLRHLVKAMNN   37 (258)
Q Consensus        10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~   37 (258)
                      +++.+++|+.++++||+.|++|++.+..
T Consensus        42 ~ie~~~eEi~~LkeEN~~L~el~~~~~~   69 (79)
T 2zxx_A           42 EIEQKDSEIARLRKENKDLAEVAEHVQY   69 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999987654

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=87.42  E-value=0.45  Score=35.35  Aligned_cols=53  Identities=19%  Similarity=0.407  Sum_probs=34.7

Q ss_pred             cccccCCccccccCccccCCCCCCcceeecccCC-CCCcccccceeecCCCcEEEEEeccccCCCCC
Q 025097           95 SLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMAS-SGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQ  160 (258)
Q Consensus        95 s~~~~DGy~WRKYGQK~ikgn~~PRsYYRCs~~~-~gC~akK~VQr~~~D~~~~~~tY~G~HnH~~p  160 (258)
                      ..++-|||...+--+      ...+.|.+|+... .+|+|+-....   + . +  ...+.|||++.
T Consensus        21 ~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~-~-~--~~~~~HnH~p~   74 (87)
T 2rpr_A           21 RFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H-R-I--MVMRSHCHQPD   74 (87)
T ss_dssp             EEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T-E-E--EECSCCSSCCC
T ss_pred             cEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C-C-E--ECCCCcCCCCc
Confidence            457789998775322      1236899999853 36999855442   2 2 2  35688999764

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=84.87  E-value=2.4  Score=30.25  Aligned_cols=42  Identities=19%  Similarity=0.302  Sum_probs=36.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097            7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE   48 (258)
Q Consensus         7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~   48 (258)
                      +.++...|+.++..+..+|..|+.-+..+-.-...|..-|.+
T Consensus        21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e   62 (63)
T 1ci6_A           21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456788999999999999999999999999888888776654

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=83.17  E-value=3.1  Score=29.17  Aligned_cols=41  Identities=22%  Similarity=0.225  Sum_probs=35.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097            7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH   47 (258)
Q Consensus         7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~   47 (258)
                      +.+.+..|+.+...+..||..|..-+..+.+....|...|+
T Consensus        20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll   60 (61)
T 1t2k_D           20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45667889999999999999999999999988888887664

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=82.87  E-value=4.3  Score=28.77  Aligned_cols=41  Identities=15%  Similarity=0.198  Sum_probs=34.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097            7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH   47 (258)
Q Consensus         7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~   47 (258)
                      +.+.+..|+.|...+..+|..|..-+..+.+.+..|...|.
T Consensus        21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~   61 (63)
T 2wt7_A           21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667889999999999999999999988888887776553

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=81.34  E-value=2.3  Score=27.71  Aligned_cols=26  Identities=27%  Similarity=0.333  Sum_probs=22.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097            8 KEKMKLLQAKLEHVRKQNENLRHLVK   33 (258)
Q Consensus         8 eee~~~L~~EL~rv~eEN~rL~~mL~   33 (258)
                      +++++.|-.|=..+..|+.||++||.
T Consensus         7 E~kVEeLl~~n~~Le~eV~rLk~ll~   32 (34)
T 2oxj_A            7 EXKVXELLXKNXHLEXEVXRLKXLVX   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            67788888888888999999999884

>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1

Probab=81.32  E-value=4.3  Score=31.49  Aligned_cols=44  Identities=20%  Similarity=0.372  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhc
Q 025097            9 EKMKLLQAKLEHVRKQNENLRHLVK----------------AMNNQCNDLLARIHEANRT   52 (258)
Q Consensus         9 ee~~~L~~EL~rv~eEN~rL~~mL~----------------~~~~~y~~Lq~~l~~~~~~   52 (258)
                      ++++.+..||+.|+.--+-|.+||+                .+.+.|..+|-.|+.+...
T Consensus         6 eq~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~   65 (103)
T 1wrd_A            6 EQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQ   65 (103)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5788999999999999999999998                3457788888888888764

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=80.07  E-value=2  Score=30.34  Aligned_cols=41  Identities=20%  Similarity=0.346  Sum_probs=32.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097            7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH   47 (258)
Q Consensus         7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~   47 (258)
                      +.+.+..|+.+...+..||..|..-+..+.+....|...|+
T Consensus        20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~   60 (62)
T 1jnm_A           20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM   60 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999988888877776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	3e-24

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.3 bits (224), Expect = 3e-24
 Identities = 33/63 (52%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 97  IVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHN 156
           ++ DG++WRKYGQKV K NP PR+Y++C+    GC V+K V+R   D   +V TYEG+HN
Sbjct: 9   LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP--GCGVRKHVERAATDPKAVVTTYEGKHN 66

Query: 157 HDV 159
           HD+
Sbjct: 67  HDL 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0
d1wrda1	93	Target of Myb protein 1, TOM1 {Human (Homo sapiens	86.82

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.7e-35  Score=221.14  Aligned_cols=64  Identities=52%  Similarity=1.040  Sum_probs=61.3

Q ss_pred             ccccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCCCCCC
Q 025097           96 LIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQC  161 (258)
Q Consensus        96 ~~~~DGy~WRKYGQK~ikgn~~PRsYYRCs~~~~gC~akK~VQr~~~D~~~~~~tY~G~HnH~~p~  161 (258)
                      .+++|||+|||||||.|+|+++||+||||++.  ||+|+|+|||+++|+.+++|||+|+|||+.|+
T Consensus         8 ~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~--~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           8 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP--GCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCSSSCBCCCEEECCTTCSSCEEEEEEECS--SCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccCCCCcEecccCceeccCCCCceEEEEcccc--CCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            57899999999999999999999999999985  79999999999999999999999999999885

>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: GAT domain
domain: Target of Myb protein 1, TOM1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.82  E-value=0.89  Score=32.81  Aligned_cols=44  Identities=20%  Similarity=0.372  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhc
Q 025097            9 EKMKLLQAKLEHVRKQNENLRHLVK----------------AMNNQCNDLLARIHEANRT   52 (258)
Q Consensus         9 ee~~~L~~EL~rv~eEN~rL~~mL~----------------~~~~~y~~Lq~~l~~~~~~   52 (258)
                      |+++.|..||+.|+.--+-|.+||+                .+.+.|..+|..|+.++..
T Consensus         1 e~~~kl~~eLe~v~~n~~lL~eML~~~~p~~~~~~d~eli~eL~~~C~~~q~~i~~li~~   60 (93)
T d1wrda1           1 EQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQ   60 (93)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4688999999999999999999997                3567888999999998865