Citrus Sinensis ID: 025103

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGSGTKPLSTLCCFNRRARRLSLFYKCFNARQAVGRDGTFLGKICCLISPSASHR
Secondary Structure (PSIPRED)
ccccccccccccccHHccccccccccccccccccccEEEEEccccccccccEEEEcEEEEEccccccccccccccccccccccccccccccEEEEEccccccccccccccEEccccccccccccccHHHHHHHHHEEEcccccEEEEEEEcccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHccHHHccccccEEccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccccHHHHccccHHHHcccccccccccEEEEccccccccccccEHHHHHHHHcccccEEEcccccccccccccccccEccccEEEEEccEEccccccEEEEEEccccccccccccccHcHHHHHHHEEEEccccEEEEEEEcccccccccccccccccHHHHHHHHHHcHcccEEcccHHHcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcEEEEEEccccccc
Coil and Loop (DISEMBL)
mvllspslslprlhfirnhrgsivqgqkncrlnnkaivcscasskpiqqngfcrrDLVLFGlssslslgfptpgsvagedvkMASFVDEINAYtylypmelpskKFLFKWVesrkperyssaaplspnarLRIVSERVDIIDNLIIsvtigppnvqflkskdkstwnakdvadsvlsdksalRVTSSQRMAESSvldahtskvdgsgtkplstlccfNRRARRLSLFYKCFNarqavgrdgtflgkicclispsashr
Flexible Loop (DISEMBL)
mvllspslslprlHFIRNHRgsivqgqkncrlNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKperyssaaplspnarlRIVSERVDIIDNLIIsvtigppnvqFLKSKDKSTWNAKdvadsvlsdksalRVTSsqrmaessvldahtskvdgsgtkplstlcCFNRRARRLSLFYKCFNArqavgrdgtflGKICclispsashr
Low Complexity Region (SEG)
MVllspslslprlHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVlfglssslslgfPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGSGTKPLSTLCCFNRRARRLSLFYKCFNARQAVGRDGTFLGKICCLISPSASHR
Disordered region (IsUnstruct)
*********LPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVE****************ARLRIVSERVDIIDNLIISVTIGPPNVQFLK***************************************************LSTLCCFNRRARRLSLFYKCFNARQAVGRDGTFLGKICCLI*******
Disordered Region (DISOPRED)
*******LSLPRLHFIRNHR******************************GFCRRDLVLFGLSSSLSLGFPTPGS**GEDVKMASFVDEINAYTYLYPMELPSKKFLF********************ARLRIVSERVDIIDNLIISVTIG*****************KDVADSVLSDKSALR***********************GTKPLSTLCCFNRRARRLSLFYKCFNARQAVGRDGTFLGKICCLISPS****
Disordered Region (DISEMBL)
MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVE************LSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSAL************************GTKPLSTLCCFNRRARRLSLFYKCFNARQAVGRDGTFLGKICCLISPSASHR
Disordered Region (DISPRO)
MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRK****SSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSS*RMAESSVLDAH*****GSGTKPLSTLCCFNRRARRLSLFYKCFNARQAVGRDGTFLGKICCLISP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGSGTKPLSTLCCFNRRARRLSLFYKCFNARQAVGRDGTFLGKICCLISPSASHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
P82715	297	PsbP domain-containing pr	yes	no	0.786	0.683	0.576	6e-59

>sp|P82715|PPD5_ARATH PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana GN=PPD5 PE=1 SV=3

 Score =  227 bits (578), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 124/215 (57%), Positives = 152/215 (70%), Gaps = 12/215 (5%)

Query: 1   MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQ-QNGFCRRDLVL 59
           M LL PSL  P     R  R S +  + +       I  S  S++ I  + G  RRDLVL
Sbjct: 1   MALLCPSLPSPNSRLFRC-RSSNISSKYHGASKELMIARSGVSTRSISSEKGLSRRDLVL 59

Query: 60  FGLSSSLSLGFPTPGSV---------AGEDVKMASFVDEINAYTYLYPMELPSKKFLFKW 110
            GLSS LS+  P    V         +GE++KM + VD+INAY+Y YP++ PS+K +FKW
Sbjct: 60  IGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKW 119

Query: 111 VESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKD 170
           VESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+IS++IGPPN + L SK+K TW+AK+
Sbjct: 120 VESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSR-LTSKEKKTWSAKE 178

Query: 171 VADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDG 205
           VADSVLSDKSALRVTSSQR+ ESSVLDAH S +DG
Sbjct: 179 VADSVLSDKSALRVTSSQRLEESSVLDAHASDIDG 213

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
255551118	251	conserved hypothetical protein [Ricinus	0.736	0.756	0.780	1e-79
224092386	295	predicted protein [Populus trichocarpa]	0.786	0.688	0.716	1e-76
225430097	284	PREDICTED: psbP domain-containing protei	0.751	0.683	0.723	4e-74
449441968	296	PREDICTED: psbP domain-containing protei	0.786	0.685	0.681	3e-70
449499583	296	PREDICTED: psbP domain-containing protei	0.786	0.685	0.676	1e-69
363807038	275	uncharacterized protein LOC100776365 [Gl	0.763	0.716	0.635	1e-63
356515500	295	PREDICTED: psbP domain-containing protei	0.786	0.688	0.600	1e-61
147790304	268	hypothetical protein VITISV_026424 [Viti	0.527	0.507	0.808	2e-57
22326731	297	PsbP domain-containing protein 5 [Arabid	0.786	0.683	0.576	4e-57
7573402	319	putative protein [Arabidopsis thaliana]	0.779	0.630	0.572	4e-57

>gi|255551118|ref|XP_002516607.1| conserved hypothetical protein [Ricinus communis] gi|223544427|gb|EEF45948.1| conserved hypothetical protein [Ricinus communis]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 149/191 (78%), Positives = 166/191 (86%), Gaps = 1/191 (0%)

Query: 15  FIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPG 74
           F+R ++  I+  QK C+L  K +VCSC SSKP   NGF RRD VLFGLSSS+S  FPT G
Sbjct: 19  FLRINQSRILLNQKRCKLKEKIMVCSC-SSKPTSFNGFLRRDFVLFGLSSSMSFVFPTSG 77

Query: 75  SVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIV 134
           S+A ED+KM   VDEINAYTYLYP+++PS KFLFKWVESRKPERYSSAAPLSP+ARLRIV
Sbjct: 78  SLAEEDLKMEPLVDEINAYTYLYPVKVPSTKFLFKWVESRKPERYSSAAPLSPDARLRIV 137

Query: 135 SERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESS 194
           SERVDIIDNLIISVTIGPPNVQF+KSKDKSTW AKDVADSVLSDKSALRVTSSQR+AESS
Sbjct: 138 SERVDIIDNLIISVTIGPPNVQFIKSKDKSTWVAKDVADSVLSDKSALRVTSSQRLAESS 197

Query: 195 VLDAHTSKVDG 205
           VLD HTS++DG
Sbjct: 198 VLDTHTSEIDG 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092386|ref|XP_002309586.1| predicted protein [Populus trichocarpa] gi|222855562|gb|EEE93109.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 149/208 (71%), Positives = 172/208 (82%), Gaps = 5/208 (2%)

Query: 2   VLLSPSLSLPRLH--FIRNHRGSIVQGQKNCRLNNKAIVCSCA--SSKPIQQNGFCRRDL 57
           +L SPS      H  F RN +  I+  QK C+L  K + CSCA  SS P  QNGFCRRDL
Sbjct: 5   LLCSPSHFTTHHHNPFFRN-QSRILLSQKKCKLKEKIMACSCACSSSDPSLQNGFCRRDL 63

Query: 58  VLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPE 117
           VLFGLSSSLS+ FP+   +A ED+KMAS VDEINAYTY YP ELPSKKFLFKWVESRKPE
Sbjct: 64  VLFGLSSSLSIAFPSSEILAEEDLKMASVVDEINAYTYSYPAELPSKKFLFKWVESRKPE 123

Query: 118 RYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLS 177
           RYSSAAPLS +ARLRIVSERVDIIDNLI+SV+IGPPN+QF+KSKDK+TW AKDVADSVLS
Sbjct: 124 RYSSAAPLSSDARLRIVSERVDIIDNLILSVSIGPPNLQFVKSKDKNTWAAKDVADSVLS 183

Query: 178 DKSALRVTSSQRMAESSVLDAHTSKVDG 205
           DKS+LRVTS+QR++ESS+LDAH +++DG
Sbjct: 184 DKSSLRVTSTQRLSESSILDAHANEIDG 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430097|ref|XP_002284586.1| PREDICTED: psbP domain-containing protein 5, chloroplastic [Vitis vinifera] gi|296081930|emb|CBI20935.3| unnamed protein product [Vitis vinifera]

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 141/195 (72%), Positives = 158/195 (81%), Gaps = 1/195 (0%)

Query: 11  PRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGF 70
           P L   RNH  ++V  QK C L  K I CSC  S+P  + GF RRDL+LFG SSS +L F
Sbjct: 7   PNLLIFRNHTRTMV-NQKKCGLPEKIISCSCVPSRPNSKIGFYRRDLILFGFSSSAALIF 65

Query: 71  PTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNAR 130
           P  G    E+ KMAS VD+INAY+YLYP+ELPSKK +FKWVESRKPERYSSAAPLSP+AR
Sbjct: 66  PPSGYGTEEEFKMASVVDDINAYSYLYPLELPSKKLVFKWVESRKPERYSSAAPLSPDAR 125

Query: 131 LRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRM 190
           LRIVSERVDIIDNLIISVTIGPPN QFLKSKDK TW AKDVADSVL+DK+ALR+TSSQRM
Sbjct: 126 LRIVSERVDIIDNLIISVTIGPPNSQFLKSKDKGTWTAKDVADSVLADKAALRITSSQRM 185

Query: 191 AESSVLDAHTSKVDG 205
           +ESSVLD H S+VDG
Sbjct: 186 SESSVLDTHASEVDG 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441968|ref|XP_004138754.1| PREDICTED: psbP domain-containing protein 5, chloroplastic-like [Cucumis sativus]

 Score =  271 bits (692), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 139/204 (68%), Positives = 163/204 (79%), Gaps = 1/204 (0%)

Query: 2   VLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFG 61
           V  S ++SLP L F RN   ++   +K   +  K  VCS + SKP  +NG  RRDL+LFG
Sbjct: 10  VSTSTNVSLPNLPFFRNQPKNL-PCRKRIGMYKKFNVCSTSISKPTSENGLSRRDLLLFG 68

Query: 62  LSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSS 121
           L+SS++L FP+ GS+A E++K A+ VDEINAY+Y YP+EL S  F FKWVESRKPERYSS
Sbjct: 69  LTSSVALSFPSLGSLAEEELKAATMVDEINAYSYTYPLELSSTNFAFKWVESRKPERYSS 128

Query: 122 AAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSA 181
           AAPLSP+ARLRIVSERVD IDNLIISVTIGPPN  F+KSKDKSTW AKDVADSVLSDKSA
Sbjct: 129 AAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSIFIKSKDKSTWAAKDVADSVLSDKSA 188

Query: 182 LRVTSSQRMAESSVLDAHTSKVDG 205
           LRVTSSQRMAESSVLD ++S +DG
Sbjct: 189 LRVTSSQRMAESSVLDTNSSNIDG 212

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499583|ref|XP_004160856.1| PREDICTED: psbP domain-containing protein 5, chloroplastic-like [Cucumis sativus]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 138/204 (67%), Positives = 162/204 (79%), Gaps = 1/204 (0%)

Query: 2   VLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFG 61
           V  S ++SLP L F R    ++   +K   +  K  VCS + SKP  +NG  RRDL+LFG
Sbjct: 10  VSTSTNVSLPNLPFFRTQPKNL-PCRKRIGMYKKFNVCSTSISKPTSENGLSRRDLLLFG 68

Query: 62  LSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSS 121
           L+SS++L FP+ GS+A E++K A+ VDEINAY+Y YP+EL S  F FKWVESRKPERYSS
Sbjct: 69  LTSSVALSFPSLGSLAEEELKAATMVDEINAYSYTYPLELSSTNFAFKWVESRKPERYSS 128

Query: 122 AAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSA 181
           AAPLSP+ARLRIVSERVD IDNLIISVTIGPPN  F+KSKDKSTW AKDVADSVLSDKSA
Sbjct: 129 AAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSIFIKSKDKSTWAAKDVADSVLSDKSA 188

Query: 182 LRVTSSQRMAESSVLDAHTSKVDG 205
           LRVTSSQRMAESSVLD ++S +DG
Sbjct: 189 LRVTSSQRMAESSVLDTNSSNIDG 212

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807038|ref|NP_001242580.1| uncharacterized protein LOC100776365 [Glycine max] gi|255644538|gb|ACU22772.1| unknown [Glycine max]

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 127/200 (63%), Positives = 157/200 (78%), Gaps = 3/200 (1%)

Query: 6   PSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSS 65
           P+L LP     RN+  +I+  Q+ C L+ +    SC + KP  QN   RRDL+L GL+S 
Sbjct: 18  PTL-LPNNLIFRNNNWTIL-NQRKCPLSEERPRFSCCALKPTSQNRIFRRDLMLLGLTS- 74

Query: 66  LSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPL 125
           LSL  P   ++A E+ KMASF+DEINAY+Y+YP+ELPS  F FKW+ESRKPERYSSAAPL
Sbjct: 75  LSLPMPLSVTLAEEEPKMASFLDEINAYSYMYPVELPSDNFSFKWIESRKPERYSSAAPL 134

Query: 126 SPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVT 185
           SP+ARLRIVSERVD IDN+IISVTIGPPN  ++KSKDKS W AKDVADSVL+D+S+LRVT
Sbjct: 135 SPDARLRIVSERVDFIDNVIISVTIGPPNSSYIKSKDKSEWTAKDVADSVLADRSSLRVT 194

Query: 186 SSQRMAESSVLDAHTSKVDG 205
           SSQR+ ESSVL+ H+S++DG
Sbjct: 195 SSQRLEESSVLNTHSSEIDG 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515500|ref|XP_003526438.1| PREDICTED: psbP domain-containing protein 5, chloroplastic-like [Glycine max]

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/213 (60%), Positives = 157/213 (73%), Gaps = 10/213 (4%)

Query: 1   MVLLSPSLSL--------PRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGF 52
           MV  S SLSL        P     RN+  +I+  Q  C  + +    SC + KP  QN  
Sbjct: 1   MVFPSSSLSLFFPIPTLLPNNLIFRNNTRAIL-NQHKCPFSEERPRFSCCALKPTSQNRI 59

Query: 53  CRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVE 112
            RRDL+L GL+S LS   P   ++A E+ KMASF+DEINAY+Y+YP+ELPS  F FKW+E
Sbjct: 60  FRRDLMLLGLTS-LSPTMPLSVTLAEEEPKMASFLDEINAYSYMYPVELPSDNFTFKWIE 118

Query: 113 SRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVA 172
           SRKPERYSSAAPLSP+ARLRIVSER+D IDN+IISVTIGPPN  ++KSKDKS W AKDVA
Sbjct: 119 SRKPERYSSAAPLSPDARLRIVSERLDFIDNVIISVTIGPPNSSYIKSKDKSKWTAKDVA 178

Query: 173 DSVLSDKSALRVTSSQRMAESSVLDAHTSKVDG 205
           DSVL+D+S+LRVTSSQR+ ESSVL+ H+S++DG
Sbjct: 179 DSVLADRSSLRVTSSQRLEESSVLNTHSSEIDG 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790304|emb|CAN63319.1| hypothetical protein VITISV_026424 [Vitis vinifera]

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 110/136 (80%), Positives = 122/136 (89%)

Query: 70  FPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNA 129
           F + G    E+ KMAS VD+INAY+YLYP+ELPSKK +FKWVESRKPERYSSAAPLSP+A
Sbjct: 49  FSSSGYGTEEEFKMASVVDDINAYSYLYPLELPSKKLVFKWVESRKPERYSSAAPLSPDA 108

Query: 130 RLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQR 189
           RLRIVSERVDIIDNLIISVTIGPPN QFLKSKDK TW AKDVADSVL+DK+ALR+TSSQR
Sbjct: 109 RLRIVSERVDIIDNLIISVTIGPPNSQFLKSKDKGTWTAKDVADSVLADKAALRITSSQR 168

Query: 190 MAESSVLDAHTSKVDG 205
           M+ESSVLD H S+VDG
Sbjct: 169 MSESSVLDTHASEVDG 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326731|ref|NP_196706.2| PsbP domain-containing protein 5 [Arabidopsis thaliana] gi|190358920|sp|P82715.3|PPD5_ARATH RecName: Full=PsbP domain-containing protein 5, chloroplastic; AltName: Full=OEC23-like protein 6; AltName: Full=PsbP-related thylakoid lumenal protein 4; AltName: Full=Thylakoid lumenal 35.8 kDa protein; Flags: Precursor gi|18252955|gb|AAL62404.1| putative protein [Arabidopsis thaliana] gi|21389651|gb|AAM48024.1| putative protein [Arabidopsis thaliana] gi|332004298|gb|AED91681.1| PsbP domain-containing protein 5 [Arabidopsis thaliana]

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 124/215 (57%), Positives = 152/215 (70%), Gaps = 12/215 (5%)

Query: 1   MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQ-QNGFCRRDLVL 59
           M LL PSL  P     R  R S +  + +       I  S  S++ I  + G  RRDLVL
Sbjct: 1   MALLCPSLPSPNSRLFRC-RSSNISSKYHGASKELMIARSGVSTRSISSEKGLSRRDLVL 59

Query: 60  FGLSSSLSLGFPTPGSV---------AGEDVKMASFVDEINAYTYLYPMELPSKKFLFKW 110
            GLSS LS+  P    V         +GE++KM + VD+INAY+Y YP++ PS+K +FKW
Sbjct: 60  IGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKW 119

Query: 111 VESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKD 170
           VESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+IS++IGPPN + L SK+K TW+AK+
Sbjct: 120 VESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSR-LTSKEKKTWSAKE 178

Query: 171 VADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDG 205
           VADSVLSDKSALRVTSSQR+ ESSVLDAH S +DG
Sbjct: 179 VADSVLSDKSALRVTSSQRLEESSVLDAHASDIDG 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7573402|emb|CAB87705.1| putative protein [Arabidopsis thaliana]

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 123/215 (57%), Positives = 152/215 (70%), Gaps = 14/215 (6%)

Query: 1   MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQ-QNGFCRRDLVL 59
           M LL PSL  P     R+   S +  + +       I  S  S++ I  + G  RRDLVL
Sbjct: 19  MALLCPSLPSPNSRLFRS---SNISSKYHGASKELMIARSGVSTRSISSEKGLSRRDLVL 75

Query: 60  FGLSSSLSLGFPTPGSV---------AGEDVKMASFVDEINAYTYLYPMELPSKKFLFKW 110
            GLSS LS+  P    V         +GE++KM + VD+INAY+Y YP++ PS+K +FKW
Sbjct: 76  IGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKW 135

Query: 111 VESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKD 170
           VESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+IS++IGPPN + L SK+K TW+AK+
Sbjct: 136 VESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSR-LTSKEKKTWSAKE 194

Query: 171 VADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDG 205
           VADSVLSDKSALRVTSSQR+ ESSVLDAH S +DG
Sbjct: 195 VADSVLSDKSALRVTSSQRLEESSVLDAHASDIDG 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
TAIR|locus:2144236	297	PPD5 "PsbP domain protein 5" [	0.651	0.565	0.597	1.1e-48

TAIR|locus:2144236 PPD5 "PsbP domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 107/179 (59%), Positives = 131/179 (73%)

Query:    37 IVCSCASSKPIQ-QNGFCRRDLVXXXXXXXXXXXXPTPGSV---------AGEDVKMASF 86
             I  S  S++ I  + G  RRDLV            P    V         +GE++KM + 
Sbjct:    36 IARSGVSTRSISSEKGLSRRDLVLIGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTM 95

Query:    87 VDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLII 146
             VD+INAY+Y YP++ PS+K +FKWVESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+I
Sbjct:    96 VDDINAYSYAYPLDYPSEKLVFKWVESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVI 155

Query:   147 SVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDG 205
             S++IGPPN + L SK+K TW+AK+VADSVLSDKSALRVTSSQR+ ESSVLDAH S +DG
Sbjct:   156 SISIGPPNSR-LTSKEKKTWSAKEVADSVLSDKSALRVTSSQRLEESSVLDAHASDIDG 213


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.132   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      258       235   0.00088  113 3  11 22  0.39    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  184 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.17u 0.18s 20.35t   Elapsed:  00:00:01
  Total cpu time:  20.17u 0.18s 20.35t   Elapsed:  00:00:01
  Start:  Mon May 20 19:25:00 2013   End:  Mon May 20 19:25:01 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015979 "photosynthesis" evidence=IEA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P82715	PPD5_ARATH	No assigned EC number	0.5767	0.7868	0.6835	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0013033101	hypothetical protein (295 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_VI000277	SubName- Full=Putative uncharacterized protein; (257 aa)				•			•		0.499
	gw1.V.2242.1	hypothetical protein (193 aa)				•			•		0.452
	gw1.II.1652.1	photosystem II thylakoid lumenal 29.8 kDa protein PsbP (224 aa)				•			•		0.451

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
PLN00059	286	PsbP domain-containing protein 1; Provisional	99.8
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	99.77
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	99.66
PLN00067	263	PsbP domain-containing protein 6; Provisional	99.5
PLN00066	262	PsbP domain-containing protein 4; Provisional	98.98
PLN03152	241	hypothetical protein; Provisional	98.81
PLN00059	286	PsbP domain-containing protein 1; Provisional	88.81

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=99.80  E-value=4.8e-20  Score=168.69  Aligned_cols=198  Identities=15%  Similarity=0.180  Sum_probs=125.1

Q ss_pred             ccccccCCCccccccccccCCCcccccccccCCccccCcccchhhhhhhhh--hhcccccCCCCCCccccccccceeccc
Q 025103           13 LHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLS--SSLSLGFPTPGSVAGEDVKMASFVDEI   90 (258)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ss~~~~~~~~RR~lll~Gl~--a~~a~l~p~s~a~AeE~~k~~~vvD~~   90 (258)
                      ..+-||-+.+.-+...+.+-+..-++-+|- ...+.--.+.||.++++|+.  ..++.....+.++|+ .++|+.++|.+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rr~~~~~~l~~~~~~~s~~~~~~a~a~-~~~l~~y~D~~  116 (286)
T PLN00059         39 LLFSRPISSGPKHQSAKSAKPDSPVAINCL-TDAKQVCAVGRRKSMMMGLLMSGLIVSEANLPTAFAS-IPVFREYIDTF  116 (286)
T ss_pred             hhccccccCCcccccccccCCCCCeeeecc-cchhhhhhhhhhhhhHHHHHHHHHHHHhhcCchhhcC-CcccceeEcCC
Confidence            444566555554444444433333333342 22234456889999998884  333455555577776 55899999999


Q ss_pred             cceeEeecccCCCcccccceeeccCcccccCCCCCCcccceeeeeeeeecccce-eEEEEecCCCccccccCCCCC-CCh
Q 025103           91 NAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNL-IISVTIGPPNVQFLKSKDKST-WNA  168 (258)
Q Consensus        91 ~aYSF~YP~~~~~~~~~f~w~eSr~perYSSAaPLspdaRqRIVsEr~Di~d~l-~iSVtiGPp~~~~l~~kd~~~-w~a  168 (258)
                      +||+|+||.+|  .++...++                    .+|.-  |+|+.. ++||.|.|+++.  +.++..+ .+|
T Consensus       117 DGY~FlYP~GW--i~V~~~G~--------------------DVvFr--D~Ie~~ENVSV~ISs~sss--~~~sLeDLGsP  170 (286)
T PLN00059        117 DGYSFKYPQNW--IQVRGAGA--------------------DIFFR--DPVVLDENLSVEFSSPSSS--KYTSLEDLGSP  170 (286)
T ss_pred             CCeEEeCCCCC--eEeccCCC--------------------ceEEe--ccCccccceEEEEecCCcc--cCCChHHcCCH
Confidence            99999999866  44433444                    45544  555555 667777776631  3467777 488


Q ss_pred             HHHHHHHhhcccc----cccCCCccccchhhhhcccccc-CCccceeEEeeec-cc----c--cc----hhhhhhhhhcc
Q 025103          169 KDVADSVLSDKSA----LRVTSSQRMAESSVLDAHTSKV-DGSGTKPLSTLCC-FN----R--RA----RRLSLFYKCFN  232 (258)
Q Consensus       169 k~VA~~VLadkst----~rvt~gQr~~~ssV~dA~~~~i-DG~~Yy~yEyi~Q-pN----~--~~----~~~~~fr~~~~  232 (258)
                      ++||+.|+..-.+    -|.-.|+.   .+|++|.+++. ||+.||.|||..+ |+    |  +.    ..++-.||.+.
T Consensus       171 ~eVgerLlkqvLa~f~str~GsgRe---aeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~RH~LA  247 (286)
T PLN00059        171 EEVGKRVLRQYLTEFMSTRLGVKRE---ANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLA  247 (286)
T ss_pred             HHHHHHHHHHHhcccccccCCCCcc---eEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccceeeEE
Confidence            9998887753222    24445665   58899998866 9999999999988 62    1  11    11334688877


Q ss_pred             cceeeccccee
Q 025103          233 ARQAVGRDGTF  243 (258)
Q Consensus       233 ~~~~~~~~~~~  243 (258)
                      +  .+-++|.|
T Consensus       248 ~--v~V~nGkL  256 (286)
T PLN00059        248 V--LGVENDRL  256 (286)
T ss_pred             E--EEEeCCEE
Confidence            7  44455554

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=99.77  E-value=3.4e-19  Score=161.78  Aligned_cols=161  Identities=17%  Similarity=0.202  Sum_probs=110.4

Q ss_pred             cCcccchhhhhhhhhhhc--ccccCCCCCCcccc---------ccccceeccccceeEeecccC-CCcccccceeeccCc
Q 025103           49 QNGFCRRDLVLFGLSSSL--SLGFPTPGSVAGED---------VKMASFVDEINAYTYLYPMEL-PSKKFLFKWVESRKP  116 (258)
Q Consensus        49 ~~~~~RR~lll~Gl~a~~--a~l~p~s~a~AeE~---------~k~~~vvD~~~aYSF~YP~~~-~~~~~~f~w~eSr~p  116 (258)
                      ...+.||..|++++++++  +-+.|+..+++|+.         .+|.++.|  |||+|+||.+| |+++..|.|++.+|+
T Consensus        47 ~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~~--dgY~FlyP~~W~~~ke~~~~G~dv~f~  124 (260)
T PLN00042         47 NSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYNG--DGFKLLVPSKWNPSKEREFPGQVLRFE  124 (260)
T ss_pred             cccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEeeC--CCeEEecCCCCccccccccCCceEEee
Confidence            345789988887777544  67888888888772         37777865  99999999999 455777788877777


Q ss_pred             ccccCCCCCCcccceeeeeeeeecccceeEEEEecCCCccccccCCCCCC-ChHHHHHHH--------hhcc--cccccC
Q 025103          117 ERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTW-NAKDVADSV--------LSDK--SALRVT  185 (258)
Q Consensus       117 erYSSAaPLspdaRqRIVsEr~Di~d~l~iSVtiGPp~~~~l~~kd~~~w-~ak~VA~~V--------Ladk--st~rvt  185 (258)
                      |.+.   ++                +  ++||.|-|+++     +++.+. +|+++++.|        ++.+  +-..-.
T Consensus       125 D~~~---~~----------------e--NVSV~Ispt~k-----~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~  178 (260)
T PLN00042        125 DNFD---AT----------------S--NLSVMVTPTDK-----KSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFD  178 (260)
T ss_pred             cccc---cc----------------c--cEEEEEecCCc-----CCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcC
Confidence            7663   22                2  34455666653     566774 777876553        3432  111122


Q ss_pred             CCccccchhhhhccccccCCccceeEEeeec-ccccchhhhhhhhhcccceeecccceee
Q 025103          186 SSQRMAESSVLDAHTSKVDGSGTKPLSTLCC-FNRRARRLSLFYKCFNARQAVGRDGTFL  244 (258)
Q Consensus       186 ~gQr~~~ssV~dA~~~~iDG~~Yy~yEyi~Q-pN~~~~~~~~fr~~~~~~~~~~~~~~~~  244 (258)
                      |+|.. ..+|+||.++++||++||.|||..+ ||..    +..||.|-+  +.-.+|.|.
T Consensus       179 p~~va-ta~Lleas~re~dGk~YY~lE~~~~~ad~d----~~~RH~Lat--atV~~GkLY  231 (260)
T PLN00042        179 ANAVA-TAAVLESSTQEVGGKPYYYLSVLTRTADGD----EGGKHQLIT--ATVSDGKLY  231 (260)
T ss_pred             ccccc-ceeEEEeeeEEeCCeEEEEEEEEEecCCCC----CCCceEEEE--EEEECCEEE
Confidence            55542 2478999999999999999999999 8632    223888877  556777764

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=99.66  E-value=6.9e-17  Score=134.48  Aligned_cols=125  Identities=19%  Similarity=0.234  Sum_probs=89.5

Q ss_pred             cccccceeccccceeEeecccCCCcccccceeeccCcccccCCCCCCcccceeeeeeeeecccce-eEEEEecCCCcccc
Q 025103           80 DVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNL-IISVTIGPPNVQFL  158 (258)
Q Consensus        80 ~~k~~~vvD~~~aYSF~YP~~~~~~~~~f~w~eSr~perYSSAaPLspdaRqRIVsEr~Di~d~l-~iSVtiGPp~~~~l  158 (258)
                      ..+|.++.|..+||+|.||.+|  .+....+                    +.++.+  |.++.. +++|.|.|..+.  
T Consensus        20 ~~~~~~y~d~~~~y~f~~P~gW--~~~~~~G--------------------~~v~f~--d~~~~~~nvsV~v~p~~~~--   73 (175)
T PF01789_consen   20 STGFQPYTDSDDGYSFLYPSGW--EEVDVSG--------------------ADVVFR--DPIDADENVSVVVSPVPKD--   73 (175)
T ss_dssp             -SSEEEEEECTTTEEEEEETTE--EEEESTT--------------------EEEEEE--ETTETTSEEEEEEEE-STS--
T ss_pred             CCCceEEEcCCCCEEEECCCCC--eecCCCC--------------------eEEEEE--CcccccceEEEEEEecCCc--
Confidence            4599999999999999999877  3333333                    244433  555444 788889888864  


Q ss_pred             ccCCCCC-CChHHHHHHHhhcccccccCCCccccchhhhhccccccCCccceeEEeeec-ccccchhhhhhhhhccccee
Q 025103          159 KSKDKST-WNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGSGTKPLSTLCC-FNRRARRLSLFYKCFNARQA  236 (258)
Q Consensus       159 ~~kd~~~-w~ak~VA~~VLadkst~rvt~gQr~~~ssV~dA~~~~iDG~~Yy~yEyi~Q-pN~~~~~~~~fr~~~~~~~~  236 (258)
                        +++.+ ++|++||+.++...... -..+   ...++++|.++++||++||+|||.++ |+      +..||.+-+  +
T Consensus        74 --~sl~~lGs~~~va~~l~~~~~~~-~~~~---~~a~li~a~~~~~~g~~yY~~Ey~~~~~~------~~~rh~l~~--~  139 (175)
T PF01789_consen   74 --FSLEDLGSPEEVAERLLNGELAS-PGSG---REAELISASEREVDGKTYYEYEYTVQSPN------EGRRHNLAV--V  139 (175)
T ss_dssp             ---SGGGG-SHHHHHHHHHHHCCCH-CTSS---EEEEEEEEEEEEETTEEEEEEEEEEEETT------EEEEEEEEE--E
T ss_pred             --CchhhcCCHHHHHHHHhhhhccc-ccCC---cceEEEEeeeeecCCccEEEEEEEeccCC------CcccEEEEE--E
Confidence              26667 59999999998753221 1111   34688999999999999999999999 88      335888887  6


Q ss_pred             ecccceee
Q 025103          237 VGRDGTFL  244 (258)
Q Consensus       237 ~~~~~~~~  244 (258)
                      .-++|+|.
T Consensus       140 tv~~g~lY  147 (175)
T PF01789_consen  140 TVKNGKLY  147 (175)
T ss_dssp             EEETTEEE
T ss_pred             EEECCEEE
Confidence            66788764

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=99.50  E-value=2.7e-14  Score=130.27  Aligned_cols=116  Identities=12%  Similarity=0.127  Sum_probs=79.2

Q ss_pred             ccccceeEeecccCCCccccc---------------ceeeccCcccccCCCCCCcccceeeeeeeeecccceeEEEEecC
Q 025103           88 DEINAYTYLYPMELPSKKFLF---------------KWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGP  152 (258)
Q Consensus        88 D~~~aYSF~YP~~~~~~~~~f---------------~w~eSr~perYSSAaPLspdaRqRIVsEr~Di~d~l~iSVtiGP  152 (258)
                      +++-||+|+||-+|  ++..+               .|+|.+|.|                     ..-+  ++||-|-|
T Consensus       102 ~~i~gY~FlyP~gW--~~v~Vs~~~sGnycqp~c~~p~~dv~F~D---------------------~~dg--nVSVIVSP  156 (263)
T PLN00067        102 GNVQPYQFILPPTW--KQTRVANILSGNYCQPKCAEPWVEVKFED---------------------EKQG--KVQVVASP  156 (263)
T ss_pred             CCcccceEeCCCCC--cCccccccccCccccccccCCCceEEEeC---------------------CCCC--CEEEEEec
Confidence            57889999999988  33332               245444433                     1223  44444445


Q ss_pred             CCccc--cccCCCCC-CChHHHHHHHhhcccccccCCCccccchhhhhccccccCCccceeEEeeec-ccccchhhhhhh
Q 025103          153 PNVQF--LKSKDKST-WNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGSGTKPLSTLCC-FNRRARRLSLFY  228 (258)
Q Consensus       153 p~~~~--l~~kd~~~-w~ak~VA~~VLadkst~rvt~gQr~~~ssV~dA~~~~iDG~~Yy~yEyi~Q-pN~~~~~~~~fr  228 (258)
                      ... +  ...+++.+ .+|++|.+.|-.. .++  .++|.   .+|+||.++++||+.||.|||..+ +++.       |
T Consensus       157 V~r-~t~k~~~sIeDlGsPeeVl~~Lg~~-v~g--~~~~~---~eLLeAs~re~dGktYY~~E~~tp~a~~g-------R  222 (263)
T PLN00067        157 LIR-LTNKPNATIEEIGSPEKLIASLGPF-VTG--NSYDP---DELLETSVEKIGDQTYYKYVLETPFALTG-------S  222 (263)
T ss_pred             ccc-cccCCCCChHHccCHHHHHHHhhHH-hhc--CCCCC---cceEEeeeEeeCCeEEEEEEEEecCCCCC-------c
Confidence            321 1  13456777 4999999997553 333  35566   478999999999999999999999 8866       8


Q ss_pred             hhcccceeecccceee
Q 025103          229 KCFNARQAVGRDGTFL  244 (258)
Q Consensus       229 ~~~~~~~~~~~~~~~~  244 (258)
                      |.|-+  ++-++|++.
T Consensus       223 HnLat--aTV~~GkLY  236 (263)
T PLN00067        223 HNLAK--ATAKGNTVV  236 (263)
T ss_pred             eEEEE--EEEECCEEE
Confidence            88877  677888764

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=98.98  E-value=6.8e-10  Score=101.50  Aligned_cols=118  Identities=13%  Similarity=0.136  Sum_probs=70.7

Q ss_pred             ccccceeEeecccCCCcccccceeeccCcccccCCCCCCcccceeeeeeeeecccceeEEEEecCCCc---cccccCCCC
Q 025103           88 DEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNV---QFLKSKDKS  164 (258)
Q Consensus        88 D~~~aYSF~YP~~~~~~~~~f~w~eSr~perYSSAaPLspdaRqRIVsEr~Di~d~l~iSVtiGPp~~---~~l~~kd~~  164 (258)
                      -++..|+|.||.+|  ++..+.-+|.--           ++.-.|++.+   -.++  ++|-|-|.+.   .+...+++.
T Consensus       110 ~~i~~Y~F~yP~GW--~ev~VS~~d~gg-----------~~vd~Rf~~~---~~~n--vsVvVspv~rla~~~~~~~sI~  171 (262)
T PLN00066        110 SEITPYSFKVPQGW--EEVPVSIADLGG-----------TEIDLRFASD---KEGR--LKVVVAPVLRFADNLGDNATIE  171 (262)
T ss_pred             cccCCeEEECCCCC--eEeecccccCCC-----------CceEEEeccC---CCcc--EEEEEeccccccccccCCCChH
Confidence            45678999999988  555554332221           1222233321   1222  3455555541   112345666


Q ss_pred             C-CChHHHHHHHhhcccccccCCCccccchhhhhccccccCCccceeEEeeecccccchhhhhhhhhcccceeeccccee
Q 025103          165 T-WNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGSGTKPLSTLCCFNRRARRLSLFYKCFNARQAVGRDGTF  243 (258)
Q Consensus       165 ~-w~ak~VA~~VLadkst~rvt~gQr~~~ssV~dA~~~~iDG~~Yy~yEyi~QpN~~~~~~~~fr~~~~~~~~~~~~~~~  243 (258)
                      + .+|++|++.+... ..+  .+.|   +.+|++|.+.+.||+.||.|||      .       ||.|-+  +.-.+|.|
T Consensus       172 dLGspeeVi~~l~~~-v~g--~~~~---e~eLl~a~~re~dGktYY~~E~------~-------rH~Las--aTV~~GrL  230 (262)
T PLN00066        172 EIGPPEKVISGFGPE-LIG--EPVE---EGKVLSMEVAEHSGRTYYQFEL------P-------PHTLVT--ATAAGNRV  230 (262)
T ss_pred             HcCCHHHHHHHHHHH-hcC--CCcc---ccceeEeeeeecCCcEEEEEEE------e-------CceEEE--EEEECCEE
Confidence            7 4899999887653 222  1333   3689999999999999999999      1       676666  33456666


Q ss_pred             e
Q 025103          244 L  244 (258)
Q Consensus       244 ~  244 (258)
                      .
T Consensus       231 Y  231 (262)
T PLN00066        231 Y  231 (262)
T ss_pred             E
Confidence            4

>PLN03152 hypothetical protein; Provisional

Probab=98.81  E-value=3.3e-08  Score=89.73  Aligned_cols=161  Identities=21%  Similarity=0.259  Sum_probs=98.1

Q ss_pred             chhhhhhhhh---hhcccccCCCCCCccccccccceecc-----------ccceeEeecccCCCcccccceeeccCcccc
Q 025103           54 RRDLVLFGLS---SSLSLGFPTPGSVAGEDVKMASFVDE-----------INAYTYLYPMELPSKKFLFKWVESRKPERY  119 (258)
Q Consensus        54 RR~lll~Gl~---a~~a~l~p~s~a~AeE~~k~~~vvD~-----------~~aYSF~YP~~~~~~~~~f~w~eSr~perY  119 (258)
                      ||++++--..   .+++.-.|..+++|+..+.-.++.-.           -+|++--||-         ...|--.||+|
T Consensus        33 ~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~g~gf~~~~pp---------~f~di~e~~~~  103 (241)
T PLN03152         33 RRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFYGDGFSIRVPP---------SFEDIMEPEDY  103 (241)
T ss_pred             ccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhhCCceEEeCCC---------ChhhhcChhhc
Confidence            7888774332   33344556667777664444443322           3577777874         23466788999


Q ss_pred             cCCCCCC-cccceeeeeeeeecccce-eEEEEecCCC---ccccccCCCCC-CChHHHHHHHhhcccccccCCCccccch
Q 025103          120 SSAAPLS-PNARLRIVSERVDIIDNL-IISVTIGPPN---VQFLKSKDKST-WNAKDVADSVLSDKSALRVTSSQRMAES  193 (258)
Q Consensus       120 SSAaPLs-pdaRqRIVsEr~Di~d~l-~iSVtiGPp~---~~~l~~kd~~~-w~ak~VA~~VLadkst~rvt~gQr~~~s  193 (258)
                      ++..-|= +-|.-|-+--|++=-|.. ++||.|-|.+   -.||..||+.| .+++||+ .++++       +|++.--.
T Consensus       104 ~~g~~~yg~~akp~~~~aRf~s~D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVg-kv~vP-------~g~~~~sa  175 (241)
T PLN03152        104 NAGLSLYGDKAKPRTFAARFASPDGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAA-KIFVP-------GGATLYSA  175 (241)
T ss_pred             ccccceecCCCCCcceeeeecCCCCCceEEEEEecCccccccccccCChhHcCCHHHHH-HhhCC-------Cccccccc
Confidence            7543332 122223333344333333 6788888876   33567799999 5999999 55554       55433222


Q ss_pred             hhhhccccccCCccceeEEeeecccccchhhhhhhhhcccceeecccceee
Q 025103          194 SVLDAHTSKVDGSGTKPLSTLCCFNRRARRLSLFYKCFNARQAVGRDGTFL  244 (258)
Q Consensus       194 sV~dA~~~~iDG~~Yy~yEyi~QpN~~~~~~~~fr~~~~~~~~~~~~~~~~  244 (258)
                      .+++.+ +++||+.||.|||...   .       ||.+.+  ++-.+|.|.
T Consensus       176 R~iel~-~E~dGKtYY~lEy~v~---~-------RH~LaT--VaVsrGKLY  213 (241)
T PLN03152        176 RTIKVK-EEEGIRTYYFYEFGRD---E-------QHVALV--ATVNSGKAY  213 (241)
T ss_pred             ceeeee-eecCCceeEEEEEEeC---C-------cEEEEE--EEEcCCeEE
Confidence            334553 4999999999999985   3       777776  555666653

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=88.81  E-value=0.56  Score=44.47  Aligned_cols=41  Identities=20%  Similarity=0.259  Sum_probs=31.4

Q ss_pred             cccccCCCCCCcccceeee--e--eeeecccceeEEEEecCCCccccccCCCCCCChHHHHHHHhhc
Q 025103          116 PERYSSAAPLSPNARLRIV--S--ERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSD  178 (258)
Q Consensus       116 perYSSAaPLspdaRqRIV--s--Er~Di~d~l~iSVtiGPp~~~~l~~kd~~~w~ak~VA~~VLad  178 (258)
                      +|.+.   +.+ |+.+.|.  +  +..|+.|       +|||..+           ++.|.+.+|+.
T Consensus       140 rD~Ie---~~E-NVSV~ISs~sss~~~sLeD-------LGsP~eV-----------gerLlkqvLa~  184 (286)
T PLN00059        140 RDPVV---LDE-NLSVEFSSPSSSKYTSLED-------LGSPEEV-----------GKRVLRQYLTE  184 (286)
T ss_pred             eccCc---ccc-ceEEEEecCCcccCCChHH-------cCCHHHH-----------HHHHHHHHhcc
Confidence            45564   444 6667776  2  5789999       9999987           89999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	9e-06
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	1e-04

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 28/136 (20%)

Query: 71  PTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNAR 130
           P           +  + D  + Y +LYP           W+                 A 
Sbjct: 2   PLGSCGGVGIASLQRYSDTKDGYEFLYP---------NGWIGVDV-----------KGAS 41

Query: 131 LRIVSERVDIIDNLI-ISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQR 189
             +     D+I+    +SV I                 A DV    +   +     +SQ 
Sbjct: 42  PGVDVVFRDLIERDENLSVIISEIPSDK---TLTDLGTATDVGYRFMKTVND----ASQG 94

Query: 190 MAESSVLDAHTSKVDG 205
             ++ +++A     DG
Sbjct: 95  DRQAELINAEARDEDG 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	99.67
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	99.6
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	99.34

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=99.67  E-value=8e-17  Score=130.72  Aligned_cols=129  Identities=20%  Similarity=0.313  Sum_probs=92.2

Q ss_pred             ccccceeccccceeEeecccCCCcccccceeeccCcccccCCCCCCcccceeeeeeeeeccc-ceeEEEEecCCCccccc
Q 025103           81 VKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIID-NLIISVTIGPPNVQFLK  159 (258)
Q Consensus        81 ~k~~~vvD~~~aYSF~YP~~~~~~~~~f~w~eSr~perYSSAaPLspdaRqRIVsEr~Di~d-~l~iSVtiGPp~~~~l~  159 (258)
                      .+|..+.|..+||+|.||.         +|.+..+++            +++++.+  |..+ .-+++|.|.|+++    
T Consensus         6 ~g~~~~~D~~~gysf~~P~---------~W~~~~~~~------------g~~v~f~--d~~~~~~~v~V~v~p~~~----   58 (165)
T 2xb3_A            6 SGLQAYVDSYDGYEFLYPR---------GWVQVQVED------------PVDVVFH--DIIETTENVSVVVNTVAS----   58 (165)
T ss_dssp             CCEEEEEETTTTEEEEEET---------TEEEECCCT------------TEEEEEE--ESSCTTSEEEEEEEECSS----
T ss_pred             CCceEEEcCCCCEEEEcCC---------CCeEecCCC------------CceEEEE--CcccCCceEEEEEecCCC----
Confidence            3799999999999999997         566655432            4456654  4333 2367888888874    


Q ss_pred             cCCCCCC-ChHHHHHHHhhcccccccCCCccccchhhhhccccccCCccceeEEeeec-ccccchhhhhhhhhcccceee
Q 025103          160 SKDKSTW-NAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGSGTKPLSTLCC-FNRRARRLSLFYKCFNARQAV  237 (258)
Q Consensus       160 ~kd~~~w-~ak~VA~~VLadkst~rvt~gQr~~~ssV~dA~~~~iDG~~Yy~yEyi~Q-pN~~~~~~~~fr~~~~~~~~~  237 (258)
                      .+++.+| ++++||+.++.+..+    +-+.....+|++|+++++||++||.|||+++ |+-.  ..+..||.|.+  +.
T Consensus        59 ~~~l~~~G~~e~va~~l~~~~~~----~~~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~--~~~~~rh~l~~--~~  130 (165)
T 2xb3_A           59 TKSLEELGSPEEVGDRLLRNIIA----PSESGRSSALIAATSQKADDKTYYILEYAVTLPGDG--NTAQQRHNLSS--IA  130 (165)
T ss_dssp             CCCSGGGCCHHHHHHHHHHHTTS----CTTSSCEEEEEEEEEEEETTEEEEEEEEEEECC-------CCEEEEEEE--EE
T ss_pred             CCChHHcCCHHHHHHHHHHHhhc----CCCCCcceEEEEeeeeecCCceEEEEEEEEecCCCc--cCccccEEEEE--EE
Confidence            4667775 999999999886443    2233334688999999999999999999999 7611  13345888877  66


Q ss_pred             cccceee
Q 025103          238 GRDGTFL  244 (258)
Q Consensus       238 ~~~~~~~  244 (258)
                      .+||++.
T Consensus       131 v~~g~lY  137 (165)
T 2xb3_A          131 VSRGKVY  137 (165)
T ss_dssp             EETTEEE
T ss_pred             EECCEEE
Confidence            6788764

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=99.60  E-value=1.1e-15  Score=128.64  Aligned_cols=129  Identities=20%  Similarity=0.182  Sum_probs=84.5

Q ss_pred             ccccceeccccceeEeecccCCCcccccceeeccCcccccCCCCCCcccceeeeeeeeecccce-eEEEEecCCCccccc
Q 025103           81 VKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNL-IISVTIGPPNVQFLK  159 (258)
Q Consensus        81 ~k~~~vvD~~~aYSF~YP~~~~~~~~~f~w~eSr~perYSSAaPLspdaRqRIVsEr~Di~d~l-~iSVtiGPp~~~~l~  159 (258)
                      .+|.++.  .+||+|+||.+|         .++...+.          ..+.++.+  |.++.. .++|.|.|++.    
T Consensus         7 ~g~~~y~--~~gysf~yP~~W---------~~~~~~~~----------~G~~~~f~--d~~~~~~nvsV~v~p~~~----   59 (177)
T 1v2b_A            7 TDFQTYN--GDGFKLQIPSKW---------NPNKEVEY----------PGQVLRFE--DNFDATSNVIVAITPTDK----   59 (177)
T ss_dssp             CCEEEEE--CSSEEEEEETTC---------EECCCCCS----------TTEEEEEE--ETTEEEEEEEEEEEECSC----
T ss_pred             CCceEEe--cCCEEEEcCCCC---------cccccccC----------CCceEEEe--CCcCCCccEEEEEeCCCC----
Confidence            3788887  899999999855         54443331          14566655  555544 68899999863    


Q ss_pred             cCCCCC-CChHHHHHHH--------hhcc--cccccCCCccccchhhhhccccccCCccceeEEeeec-ccccchhhhhh
Q 025103          160 SKDKST-WNAKDVADSV--------LSDK--SALRVTSSQRMAESSVLDAHTSKVDGSGTKPLSTLCC-FNRRARRLSLF  227 (258)
Q Consensus       160 ~kd~~~-w~ak~VA~~V--------Ladk--st~rvt~gQr~~~ssV~dA~~~~iDG~~Yy~yEyi~Q-pN~~~~~~~~f  227 (258)
                       +++.+ |+|++||+.|        |+++  +.....|+ .+...+|++|+++++||++||+|||+++ |+..    +..
T Consensus        60 -~si~dlGspe~~~~~v~~~l~~~~~~~~~~~~~gf~~~-~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~----e~~  133 (177)
T 1v2b_A           60 -KSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESD-AVAIANVLETSTAEVGGKQYYYLSILTRTADGN----EGG  133 (177)
T ss_dssp             -SSGGGGCSHHHHHHHTGGGC-------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC---------CC
T ss_pred             -CChhHCCCHHHHHHHHHHHHHHHhhcccccccCCcccC-cccceEEEEeEEEEeCCeEEEEEEEEEecCCCC----ccc
Confidence             67777 8999976664        3321  22222343 3345799999999999999999999999 8632    356


Q ss_pred             hhhcccceeecccceee
Q 025103          228 YKCFNARQAVGRDGTFL  244 (258)
Q Consensus       228 r~~~~~~~~~~~~~~~~  244 (258)
                      ||.|.+  +.-++|+|.
T Consensus       134 rH~l~~--~tv~~gkLY  148 (177)
T 1v2b_A          134 KHQLVT--ATVNDGKLY  148 (177)
T ss_dssp             EEEEEE--EEEETTEEE
T ss_pred             cEEEEE--EEEECCEEE
Confidence            898887  666788775

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=99.34  E-value=2e-16  Score=130.26  Aligned_cols=127  Identities=19%  Similarity=0.233  Sum_probs=91.1

Q ss_pred             ccccceeccccceeEeecccCCCcccccceeeccCcccccCCCCCCcccceeeeeeeeecccce-eEEEEecCCCccccc
Q 025103           81 VKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNL-IISVTIGPPNVQFLK  159 (258)
Q Consensus        81 ~k~~~vvD~~~aYSF~YP~~~~~~~~~f~w~eSr~perYSSAaPLspdaRqRIVsEr~Di~d~l-~iSVtiGPp~~~~l~  159 (258)
                      .+|.+++|..+||+|.||.+|  ++..+...                .-.+.++.+  |.++.. +++|.|.|..+    
T Consensus        12 ~g~~~y~d~~~gy~f~~P~gW--~~~~~~~~----------------~~g~~v~f~--d~~~~~~nvsV~v~p~~~----   67 (170)
T 2lnj_A           12 ASLQRYSDTKDGYEFLYPNGW--IGVDVKGA----------------SPGVDVVFR--DLIERDENLSVIISEIPS----   67 (170)
Confidence            489999999999999999877  22221100                112233333  545443 67888888874    


Q ss_pred             cCCCCCC-ChHHHHHHHhhcccccccCCCccccchhhhhccccccCCccceeEEeeec-c-cccchhhhhhhhhccccee
Q 025103          160 SKDKSTW-NAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGSGTKPLSTLCC-F-NRRARRLSLFYKCFNARQA  236 (258)
Q Consensus       160 ~kd~~~w-~ak~VA~~VLadkst~rvt~gQr~~~ssV~dA~~~~iDG~~Yy~yEyi~Q-p-N~~~~~~~~fr~~~~~~~~  236 (258)
                      .+++.+| +|++||+.++....+    +.+.....+|++|+++++||++||.|||+.+ | +..       ||.+.+  +
T Consensus        68 ~~si~d~G~pe~va~~l~~~~~~----~~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~-------rh~l~~--~  134 (170)
T 2lnj_A           68 DKTLTDLGTATDVGYRFMKTVND----ASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVE-------RHDLAS--V  134 (170)
Confidence            4778899 999999999886443    3344556799999999999999999999999 7 655       777776  4


Q ss_pred             ecccceee
Q 025103          237 VGRDGTFL  244 (258)
Q Consensus       237 ~~~~~~~~  244 (258)
                      .-+||.+.
T Consensus       135 ~v~~gklY  142 (170)
T 2lnj_A          135 TTNRGKLI  142 (170)
Confidence            44676543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	99.59

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.59  E-value=2.2e-16  Score=127.87  Aligned_cols=135  Identities=17%  Similarity=0.173  Sum_probs=79.0

Q ss_pred             cccceeccccceeEeecccCCCcccccceeeccCcccccCCCCCCcccceeeeeeeeecccceeEEEEecCCCccccccC
Q 025103           82 KMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSK  161 (258)
Q Consensus        82 k~~~vvD~~~aYSF~YP~~~~~~~~~f~w~eSr~perYSSAaPLspdaRqRIVsEr~Di~d~l~iSVtiGPp~~~~l~~k  161 (258)
                      .|.++.|  |||+|.||.         +|.+++.++.+.      .|+|.   ....|-.+  +++|.|.|++..-|+.-
T Consensus         2 ~~~~y~~--dgy~f~~P~---------~W~~~~~~~~~g------~d~~f---~d~~~~~~--nv~V~v~p~~~~sl~~~   59 (171)
T d1v2ba_           2 DFQTYNG--DGFKLQIPS---------KWNPNKEVEYPG------QVLRF---EDNFDATS--NVIVAITPTDKKSITDF   59 (171)
T ss_dssp             CEEEEEC--SSEEEEEET---------TCEECCCCCSTT------EEEEE---EETTEEEE--EEEEEEEECSCSSGGGG
T ss_pred             CcccccC--CCEEEECCC---------CCceecccCCCC------ceEEE---eccccCCc--eEEEEEecCCCcchhhc
Confidence            3677777  799999997         566666555442      12222   22223334  45666667764433333


Q ss_pred             CCCCCChHHHHHHHhhcccccc-----cCCCccccchhhhhccccccCCccceeEEeeec-ccccchhhhhhhhhcccce
Q 025103          162 DKSTWNAKDVADSVLSDKSALR-----VTSSQRMAESSVLDAHTSKVDGSGTKPLSTLCC-FNRRARRLSLFYKCFNARQ  235 (258)
Q Consensus       162 d~~~w~ak~VA~~VLadkst~r-----vt~gQr~~~ssV~dA~~~~iDG~~Yy~yEyi~Q-pN~~~~~~~~fr~~~~~~~  235 (258)
                      ...+|.+++|++.++.+..+++     .+..|.+..++|++|+++++||++||+|||+.+ |+..    +-.||.|.+  
T Consensus        60 G~p~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~----~~~rh~l~~--  133 (171)
T d1v2ba_          60 GSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGN----EGGKHQLVT--  133 (171)
T ss_dssp             CSHHHHHHHTGGGC------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC---------CCEEEEEE--
T ss_pred             cChHHHHHHHHHHHhhhhhcccccccccccccccceeEEEEeeeeecCCEEEEEEEEEEecCCCC----CcccEEEEE--
Confidence            3333444455555555544443     234577888899999999999999999999998 6553    234898888  


Q ss_pred             eecccceee
Q 025103          236 AVGRDGTFL  244 (258)
Q Consensus       236 ~~~~~~~~~  244 (258)
                      +.-++|+|.
T Consensus       134 ~~v~~grLY  142 (171)
T d1v2ba_         134 ATVNDGKLY  142 (171)
T ss_dssp             EEEETTEEE
T ss_pred             EEEeCCEEE
Confidence            777888865