Citrus Sinensis ID: 025110

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MVPASILKSVSSSRLHCQEKHFTLQLQMKRKILSWPLLNLQAFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVSA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccccEEEEcccccEEcccccccEEEEccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEEccEEEEccccEEEEEEEEEEEccccccccccccccccccccccEEEEEEEEEccEEEEEEEEccccccHHHHHHHHHHHccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHHHHHcccccHHHccccccccEEEcccccEEEEcccccEEEEcccccEEEEccccccccEEEEEEcccccccccHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccccEEEEEEEEEEEcccccEEEEcccccccEccccccEEEEEEEEccEEEEEEEcccHHHHHHHHHHHHHHHHccEEEEccc
Coil and Loop (DISEMBL)
MVPASILksvsssrlhcqeKHFTLQLQMKRKILswpllnlqafaVPRRNAMALILSSYifsdfgfrntaLAQQsvgfreyidtfdgysfkypqnwiqvrgagadifyrdpyvldenvsvelsspsssryksvedlgppkeaGRKVLRQYLTEFMStrlgvrresnilstssrvaddgRLYYLVEVNIKsfannnelavmpkdrvvnlewdrRYLSVLGvennrlyelrlqtpenvfveEENDLRQVIDSFRVNKVSA
Flexible Loop (DISEMBL)
mvpasilksvsssrlhcqEKHFTLQLQMKRKILSWPLLNLQAFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSvelsspsssryksvedlgppkeagrkVLRQYLTEfmstrlgvrresnilstssrvaddgrLYYLVEVNIKsfannnelavmpkdrvvnleWDRRYLSVlgvennrlyelrlqtpenvfveeendlrqvidsfrvnkvsa
Low Complexity Region (SEG)
MVPASILKSVSSSRLHCQEKHFTLQLQMKRKILSWPLLNLQAFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELsspsssRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVSA
Disordered region (IsUnstruct)
***************HCQEKHFTLQLQMKRKILSWPLLNLQAFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENV***************************VLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVID*********
Disordered Region (DISOPRED)
*************************************************AMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPS*********LGPPKEAGRKVLRQYLT***********************DDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENV*VEEENDLRQVIDSFRVNKV**
Disordered Region (DISEMBL)
MVPASILKSVSSSRLHCQEKHFTLQLQMKRKILSWPLLNLQAFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVS*****************GPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVSA
Disordered Region (DISPRO)
*********V***RLHCQEKHFTLQLQMKRKILSWPLLNLQAFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFM***********ILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVS*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVPASILKSVSSSRLHCQEKHFTLQLQMKRKILSWPLLNLQAFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
O23403	287	PsbP domain-containing pr	yes	no	0.828	0.742	0.737	7e-84
P82538	230	PsbP-like protein 1, chlo	no	no	0.603	0.673	0.262	6e-08

>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1

 Score =  310 bits (794), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 160/217 (73%), Positives = 183/217 (84%), Gaps = 4/217 (1%)

Query: 41  QAFAVPRRNAM--ALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQV 98
           Q  AV RR +M   L++S  I S      TA A   V FREYIDTFDGYSFKYPQNWIQV
Sbjct: 73  QVCAVGRRKSMMMGLLMSGLIVSQANL-PTAFASTPV-FREYIDTFDGYSFKYPQNWIQV 130

Query: 99  RGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRL 158
           RGAGADIF+RDP VLDEN+SVE SSPSSS Y S+EDLG P+E G++VLRQYLTEFMSTRL
Sbjct: 131 RGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRL 190

Query: 159 GVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLG 218
           GV+R++NILSTSSRVADDG+LYY VEVNIKS+ANNNELAVMP+DRV  LEW+RRYL+VLG
Sbjct: 191 GVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLG 250

Query: 219 VENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKV 255
           VEN+RLY +RLQTPE VF+EEE DLR+V+DSFRV K+
Sbjct: 251 VENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287

Arabidopsis thaliana (taxid: 3702)

>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 28/183 (15%)

Query: 71  AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYK 130
           A+   GF    D  D Y+F YP  W +V   G D  Y+D     E+VSV L  P+S +  
Sbjct: 75  AESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNL-VPTSKQ-- 131

Query: 131 SVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSF 190
           ++++ GPPK+    ++++ L            +   L  +S    DG+ YY  E  ++  
Sbjct: 132 TIKEFGPPKQIAETLIKKVLAP--------PNQKTTLIDASEHDVDGKTYYQFEFTVQ-- 181

Query: 191 ANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSF 250
           A N               + R  L  + V N   Y L     E  + + ++ L  V+DSF
Sbjct: 182 ARN---------------YTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSF 226

Query: 251 RVN 253
           ++ 
Sbjct: 227 KIT 229

Required for efficient repair of photodamaged PSII, but not tightly associated with the complex.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
224124634	212	predicted protein [Populus trichocarpa]	0.824	1.0	0.896	1e-104
224124990	265	predicted protein [Populus trichocarpa]	0.840	0.815	0.870	1e-103
255542948	265	Thylakoid lumenal 21.5 kDa protein, chlo	0.836	0.811	0.855	1e-102
311335431	257	PsbP domain protein 1 [Gossypium hirsutu	0.852	0.852	0.845	1e-100
359487555	282	PREDICTED: psbP domain-containing protei	0.883	0.804	0.819	1e-100
296089803	248	unnamed protein product [Vitis vinifera]	0.883	0.915	0.819	1e-100
449443516	258	PREDICTED: psbP domain-containing protei	0.832	0.829	0.826	9e-97
356505763	258	PREDICTED: psbP domain-containing protei	0.984	0.980	0.715	2e-95
388502234	326	unknown [Lotus japonicus]	0.824	0.650	0.809	1e-94
356571066	227	PREDICTED: LOW QUALITY PROTEIN: psbP dom	0.821	0.929	0.774	4e-92

>gi|224124634|ref|XP_002330072.1| predicted protein [Populus trichocarpa] gi|222871497|gb|EEF08628.1| predicted protein [Populus trichocarpa]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/212 (89%), Positives = 206/212 (97%)

Query: 44  AVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGA 103
           AVPRRNAMALILSSY+FS+FGF N A AQQSVGFREYID FDGYSFKYPQNWIQVRGAGA
Sbjct: 1   AVPRRNAMALILSSYMFSEFGFDNLAFAQQSVGFREYIDQFDGYSFKYPQNWIQVRGAGA 60

Query: 104 DIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRE 163
           DIF+RDP+VLDEN+SVELSSPSSSRYKSVEDLGPP+EAG+KVL+QYLTEFMSTRLGVRRE
Sbjct: 61  DIFFRDPFVLDENLSVELSSPSSSRYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRE 120

Query: 164 SNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNR 223
           SNILSTSSRVADDG+LYY VEVNIKS+ANNNELAVMP++RVV LEWDRRYLSVLGVENN+
Sbjct: 121 SNILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPRERVVRLEWDRRYLSVLGVENNQ 180

Query: 224 LYELRLQTPENVFVEEENDLRQVIDSFRVNKV 255
           LYELRLQTPENVFVEEENDLR+V+DSFRVNK+
Sbjct: 181 LYELRLQTPENVFVEEENDLRKVMDSFRVNKI 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124990|ref|XP_002319475.1| predicted protein [Populus trichocarpa] gi|118485159|gb|ABK94442.1| unknown [Populus trichocarpa] gi|222857851|gb|EEE95398.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/216 (87%), Positives = 207/216 (95%)

Query: 41  QAFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRG 100
           +AFAVPRRNAMALILSSYIFS+ GF N A AQ+SVGFREYID FDGYS K+PQNWIQVRG
Sbjct: 49  KAFAVPRRNAMALILSSYIFSEVGFNNIAFAQRSVGFREYIDQFDGYSLKHPQNWIQVRG 108

Query: 101 AGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGV 160
           AGADIF+RDP+VLDEN+SVELSSPSSS YKSVEDLGPP+EAG+KVL+QYLTEFMSTRLGV
Sbjct: 109 AGADIFFRDPFVLDENLSVELSSPSSSNYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGV 168

Query: 161 RRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVE 220
           RRESNI+STSSRVADDG+LYY VEVNIKS+ANNNELAVMP++RVV LEW+RRY+SVLGVE
Sbjct: 169 RRESNIISTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQERVVRLEWNRRYMSVLGVE 228

Query: 221 NNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVS 256
           NNRLYELRLQTPENVFVEEENDLRQV+DSFRVNKV+
Sbjct: 229 NNRLYELRLQTPENVFVEEENDLRQVMDSFRVNKVT 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542948|ref|XP_002512537.1| Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223548498|gb|EEF49989.1| Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/215 (85%), Positives = 205/215 (95%)

Query: 41  QAFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRG 100
           +AFAVPRR+ MALI SS I S+ GF ++ALAQ SVGFREYIDTFDGYSFKYP+NWIQVRG
Sbjct: 51  KAFAVPRRSTMALIFSSCILSEVGFHSSALAQSSVGFREYIDTFDGYSFKYPKNWIQVRG 110

Query: 101 AGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGV 160
           AGADIF+RDPYVLDEN+SVE+SSPSSS+Y SVEDLGPP+EAG+KVL+QYLTEFMSTRLGV
Sbjct: 111 AGADIFFRDPYVLDENLSVEMSSPSSSKYTSVEDLGPPQEAGKKVLKQYLTEFMSTRLGV 170

Query: 161 RRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVE 220
           RRES+ILSTSSRVADDG+LYY VEVNIKS+ANNNE+AVMP+DRVV LEW+RRYLSVLGVE
Sbjct: 171 RRESDILSTSSRVADDGKLYYQVEVNIKSYANNNEMAVMPQDRVVRLEWNRRYLSVLGVE 230

Query: 221 NNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKV 255
           NNRLYELRLQTPENVFVEEENDLRQV++SFRVNKV
Sbjct: 231 NNRLYELRLQTPENVFVEEENDLRQVMESFRVNKV 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|311335431|gb|ADP89574.1| PsbP domain protein 1 [Gossypium hirsutum]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/220 (84%), Positives = 205/220 (93%), Gaps = 1/220 (0%)

Query: 39  NLQAFAVPRRNAMALILSSYIFSDFGFR-NTALAQQSVGFREYIDTFDGYSFKYPQNWIQ 97
           + QA ++PRRNAMALILS+YIFS+ G   N A A+ SVGFREYIDTFDGYS KYPQNWIQ
Sbjct: 38  SFQASSIPRRNAMALILSTYIFSEVGLHDNIAFAEPSVGFREYIDTFDGYSLKYPQNWIQ 97

Query: 98  VRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTR 157
           VRGAGADIF+RDPYVLDEN+SVELSSPSSSRYK+VEDLGPP+EAG+KVL+QYLTEFMSTR
Sbjct: 98  VRGAGADIFFRDPYVLDENLSVELSSPSSSRYKTVEDLGPPEEAGKKVLKQYLTEFMSTR 157

Query: 158 LGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVL 217
           LGVRRESNILSTSSRVADDG+LYY VEVNIKS+AN NELAVMP+DRV  LEW+RRYLSVL
Sbjct: 158 LGVRRESNILSTSSRVADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVL 217

Query: 218 GVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVSA 257
           GVENNRLYELRLQTPE+VFVEEENDLRQV+DSFRVNKV+ 
Sbjct: 218 GVENNRLYELRLQTPESVFVEEENDLRQVMDSFRVNKVAG 257

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487555|ref|XP_002281448.2| PREDICTED: psbP domain-containing protein 1, chloroplastic [Vitis vinifera]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/227 (81%), Positives = 204/227 (89%)

Query: 31  KILSWPLLNLQAFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFK 90
           + +S  L   + FAV RR+AMALI SSYIFS  G  + ALAQ SVGFREYIDTFDGYSFK
Sbjct: 56  RAISCQLQTTKGFAVLRRDAMALIFSSYIFSRVGLHDVALAQPSVGFREYIDTFDGYSFK 115

Query: 91  YPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYL 150
           YPQNWIQVRG+GADIF+RDP+VLDEN+SVELSSPSSSRYKSVEDLG P+EAG+KVL+QYL
Sbjct: 116 YPQNWIQVRGSGADIFFRDPFVLDENLSVELSSPSSSRYKSVEDLGQPQEAGKKVLQQYL 175

Query: 151 TEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWD 210
           TEFMSTRLGVRRESNI+STSSRVADDGR YY VEVNIKS+ANNNELAVMP DRV  LEWD
Sbjct: 176 TEFMSTRLGVRRESNIVSTSSRVADDGRTYYQVEVNIKSYANNNELAVMPTDRVTRLEWD 235

Query: 211 RRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVSA 257
           RRYLSVLGVENNRLYELRLQTPE+VF+EEEN+LRQV+DSFRVNK S 
Sbjct: 236 RRYLSVLGVENNRLYELRLQTPESVFLEEENELRQVMDSFRVNKASG 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089803|emb|CBI39622.3| unnamed protein product [Vitis vinifera]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/227 (81%), Positives = 204/227 (89%)

Query: 31  KILSWPLLNLQAFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFK 90
           + +S  L   + FAV RR+AMALI SSYIFS  G  + ALAQ SVGFREYIDTFDGYSFK
Sbjct: 22  RAISCQLQTTKGFAVLRRDAMALIFSSYIFSRVGLHDVALAQPSVGFREYIDTFDGYSFK 81

Query: 91  YPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYL 150
           YPQNWIQVRG+GADIF+RDP+VLDEN+SVELSSPSSSRYKSVEDLG P+EAG+KVL+QYL
Sbjct: 82  YPQNWIQVRGSGADIFFRDPFVLDENLSVELSSPSSSRYKSVEDLGQPQEAGKKVLQQYL 141

Query: 151 TEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWD 210
           TEFMSTRLGVRRESNI+STSSRVADDGR YY VEVNIKS+ANNNELAVMP DRV  LEWD
Sbjct: 142 TEFMSTRLGVRRESNIVSTSSRVADDGRTYYQVEVNIKSYANNNELAVMPTDRVTRLEWD 201

Query: 211 RRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVSA 257
           RRYLSVLGVENNRLYELRLQTPE+VF+EEEN+LRQV+DSFRVNK S 
Sbjct: 202 RRYLSVLGVENNRLYELRLQTPESVFLEEENELRQVMDSFRVNKASG 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443516|ref|XP_004139523.1| PREDICTED: psbP domain-containing protein 1, chloroplastic-like [Cucumis sativus] gi|449520599|ref|XP_004167321.1| PREDICTED: psbP domain-containing protein 1, chloroplastic-like [Cucumis sativus]

 Score =  358 bits (920), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 181/219 (82%), Positives = 202/219 (92%), Gaps = 5/219 (2%)

Query: 39  NLQAFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQV 98
           +++  AVPRR+AMAL+LS+ IFS     N+ALA  SVG  EYIDTFDGYSFKYP+NWIQV
Sbjct: 45  SIKGVAVPRRSAMALMLSTCIFS-----NSALAVSSVGLLEYIDTFDGYSFKYPKNWIQV 99

Query: 99  RGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRL 158
           RGAGADIF+RDP+VLDEN+SVE SSPSSSRY SV+DLGPP+EAG+KVL+QYLTEFMSTRL
Sbjct: 100 RGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRL 159

Query: 159 GVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLG 218
           GVRRESNILSTSSR+ADDGR YY VEVNIKS+ANNNELAVMP+DRVV LEWDRRYLSVLG
Sbjct: 160 GVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLG 219

Query: 219 VENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVSA 257
           VEN+RLYELRLQTPENVFVEEENDLRQV+DSFRVNKV+A
Sbjct: 220 VENSRLYELRLQTPENVFVEEENDLRQVMDSFRVNKVNA 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505763|ref|XP_003521659.1| PREDICTED: psbP domain-containing protein 1, chloroplastic-like [Glycine max]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 184/257 (71%), Positives = 214/257 (83%), Gaps = 4/257 (1%)

Query: 1   MVPASILKSVSSSRLHCQEKHFTLQLQMKRKILSWPLLNLQAFAVPRRNAMALILSSYIF 60
           ++P  +L+  + +       H T      R  LS    + +AFAVPRR A++LILSSY  
Sbjct: 6   IMPGFLLRPTTQTTPFRLPNH-THSFHSPRCSLSLTPQSAKAFAVPRRKALSLILSSYFL 64

Query: 61  SDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVE 120
           S+ G    ALAQQS  FREYID FDGYSF+YP +WIQVRGAGADIF+RDP+VLDEN+S+E
Sbjct: 65  SEAGL---ALAQQSPVFREYIDAFDGYSFQYPGSWIQVRGAGADIFFRDPFVLDENLSLE 121

Query: 121 LSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLY 180
           +SSPSSS+YKSVEDLGPP+EAG+KVL+QYLTEFMSTRLGVRRESNILSTSSRVADDGRLY
Sbjct: 122 ISSPSSSQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRVADDGRLY 181

Query: 181 YLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEE 240
           Y VEVNIKS+ANNNELAVMP+ RVV LEWDRRYLSVLGVENN+LYELRLQ PENVF EEE
Sbjct: 182 YQVEVNIKSYANNNELAVMPEARVVRLEWDRRYLSVLGVENNQLYELRLQVPENVFSEEE 241

Query: 241 NDLRQVIDSFRVNKVSA 257
           NDLR+++DSFRVNK++A
Sbjct: 242 NDLRRIMDSFRVNKIAA 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502234|gb|AFK39183.1| unknown [Lotus japonicus]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 174/215 (80%), Positives = 198/215 (92%), Gaps = 3/215 (1%)

Query: 41  QAFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRG 100
           +AFAVPRR AM+LILSS I S  G    A AQQ   FREY+DTFDGYSFKYP NWIQVRG
Sbjct: 113 KAFAVPRRKAMSLILSSCILSKVGL---AFAQQPPVFREYVDTFDGYSFKYPGNWIQVRG 169

Query: 101 AGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGV 160
           AGADIF+RDPY+LDEN+S+E+SSPSSS+YKSVEDLGPP+EAG+KVL+QYLTEFMSTRLGV
Sbjct: 170 AGADIFFRDPYILDENLSLEISSPSSSQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGV 229

Query: 161 RRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVE 220
           RRE+N+LSTSSRVADDG+LYY VEVNIKS+A+NNELAVMP+DRVV LEWDRRYLSVLGVE
Sbjct: 230 RREANVLSTSSRVADDGKLYYQVEVNIKSYASNNELAVMPQDRVVRLEWDRRYLSVLGVE 289

Query: 221 NNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKV 255
           NN+LYELRLQTPENVF EEE+DLR+V+DSFRVN++
Sbjct: 290 NNQLYELRLQTPENVFQEEESDLRRVMDSFRVNQI 324

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571066|ref|XP_003553702.1| PREDICTED: LOW QUALITY PROTEIN: psbP domain-containing protein 1, chloroplastic-like [Glycine max]

 Score =  343 bits (880), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 168/217 (77%), Positives = 193/217 (88%), Gaps = 6/217 (2%)

Query: 41  QAFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRG 100
           +AFAVPRR AM+LILSSY+ S+ G    ALAQQS  FREYID FDG SF+YP +WIQVRG
Sbjct: 17  KAFAVPRRKAMSLILSSYVLSEVGL---ALAQQSPVFREYIDAFDGCSFQYPGSWIQVRG 73

Query: 101 AGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGV 160
           AGADIF+RDP+VLDEN+SVE+S PSSS+YK+VEDLG P+EAG+KVL+QYLTEFMSTRLGV
Sbjct: 74  AGADIFFRDPFVLDENLSVEISXPSSSQYKNVEDLGAPQEAGKKVLKQYLTEFMSTRLGV 133

Query: 161 RRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVE 220
           RRESNILSTSSRV DDGRLYY +EVNIKS+ANNNELAVMP+DRVV LEWD RYLSVLGVE
Sbjct: 134 RRESNILSTSSRVTDDGRLYYQIEVNIKSYANNNELAVMPEDRVVRLEWDPRYLSVLGVE 193

Query: 221 NNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVSA 257
           NN+LYELRLQ    VF EEEND+R+++DSFRVNK++ 
Sbjct: 194 NNQLYELRLQX---VFSEEENDIRRIMDSFRVNKIAT 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
TAIR|locus:2130295	287	PPD1 "PsbP-Domain Protein1" [A	0.828	0.742	0.709	4.3e-77
TAIR|locus:2100681	230	PPL1 "PsbP-like protein 1" [Ar	0.420	0.469	0.260	2.9e-06

TAIR|locus:2130295 PPD1 "PsbP-Domain Protein1" [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 154/217 (70%), Positives = 177/217 (81%)

Query:    41 QAFAVPRRNAM--ALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQV 98
             Q  AV RR +M   L++S  I S      TA A   V FREYIDTFDGYSFKYPQNWIQV
Sbjct:    73 QVCAVGRRKSMMMGLLMSGLIVSQANLP-TAFASTPV-FREYIDTFDGYSFKYPQNWIQV 130

Query:    99 RGAGADIFYRDPYVLDENVSVELXXXXXXRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRL 158
             RGAGADIF+RDP VLDEN+SVE        Y S+EDLG P+E G++VLRQYLTEFMSTRL
Sbjct:   131 RGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRL 190

Query:   159 GVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLG 218
             GV+R++NILSTSSRVADDG+LYY VEVNIKS+ANNNELAVMP+DRV  LEW+RRYL+VLG
Sbjct:   191 GVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLG 250

Query:   219 VENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKV 255
             VEN+RLY +RLQTPE VF+EEE DLR+V+DSFRV K+
Sbjct:   251 VENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048564 "photosystem I assembly" evidence=IMP

TAIR|locus:2100681 PPL1 "PsbP-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query:    71 AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELXXXXXXRYK 130
             A+   GF    D  D Y+F YP  W +V   G D  Y+D     E+VSV L        +
Sbjct:    75 AESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSK---Q 131

Query:   131 SVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKS 189
             ++++ GPPK+    ++++ L           +++ ++  S    D G+ YY  E  +++
Sbjct:   132 TIKEFGPPKQIAETLIKKVLAP-------PNQKTTLIDASEHDVD-GKTYYQFEFTVQA 182

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23403	PPD1_ARATH	No assigned EC number	0.7373	0.8287	0.7421	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.131.248.1	hypothetical protein (212 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.I.6006.1	hypothetical protein (200 aa)			•	•					0.527
	eugene3.00130190	SubName- Full=Putative uncharacterized protein; (339 aa)			•	•					0.523
	eugene3.00020518	SubName- Full=Putative uncharacterized protein; (262 aa)			•				•		0.523
	estExt_fgenesh4_pg.C_LG_V1224	SubName- Full=Putative uncharacterized protein; (262 aa)			•				•		0.523
	gw1.XIV.2732.1	hypothetical protein (109 aa)			•	•					0.518
	estExt_Genewise1_v1.C_LG_XIII0363	hypothetical protein (158 aa)			•	•					0.514
	estExt_fgenesh4_pg.C_290310	hypothetical protein (227 aa)			•	•					0.508
	gw1.XV.3200.1	hypothetical protein (265 aa)			•						0.506
	gw1.III.1425.1	hypothetical protein (172 aa)			•						0.506
	gw1.II.1221.1	hypothetical protein (155 aa)			•						0.506

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	257
PLN00059	286	PLN00059, PLN00059, PsbP domain-containing protein	1e-108
pfam01789	163	pfam01789, PsbP, PsbP	1e-54

>gnl|CDD|177690 PLN00059, PLN00059, PsbP domain-containing protein 1; Provisional

 Score =  312 bits (801), Expect = e-108
 Identities = 161/216 (74%), Positives = 184/216 (85%), Gaps = 4/216 (1%)

Query: 41  QAFAVPRRNAM--ALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQV 98
           Q  AV RR +M   L++S  I S+     TA A   V FREYIDTFDGYSFKYPQNWIQV
Sbjct: 73  QVCAVGRRKSMMMGLLMSGLIVSEANL-PTAFASIPV-FREYIDTFDGYSFKYPQNWIQV 130

Query: 99  RGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRL 158
           RGAGADIF+RDP VLDEN+SVE SSPSSS+Y S+EDLG P+E G++VLRQYLTEFMSTRL
Sbjct: 131 RGAGADIFFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRL 190

Query: 159 GVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLG 218
           GV+RE+NILSTSSRVADDG+LYY VEVNIKS+ANNNELAVMP+DRV  LEW+RRYL+VLG
Sbjct: 191 GVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLG 250

Query: 219 VENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNK 254
           VEN+RLY +RLQTPE VF+EEE DLR+V+DSFRV K
Sbjct: 251 VENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEK 286

Length = 286

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score =  172 bits (439), Expect = 1e-54
 Identities = 61/179 (34%), Positives = 86/179 (48%), Gaps = 25/179 (13%)

Query: 76  GFREYIDTFDGYSFKYPQNWIQ-VRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVED 134
           GF+ Y+DT DGY F YP  W + V   G D+ + D    DENVSV +S       KS+ED
Sbjct: 9   GFQAYVDTDDGYEFLYPTGWWREVVSDGPDVVFHDLIESDENVSVVISPVDKK--KSLED 66

Query: 135 LGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNN 194
           LG P+E G ++LR  L    S R     E+ +L  S R  D G+ YY +E  ++      
Sbjct: 67  LGSPEEVGERLLRGVLAPEGSGR-----EAELLEASEREVD-GKTYYDLEYLVRLADG-- 118

Query: 195 ELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVN 253
                          DR  L+ + V+  +LY L  QT E  + + +    +V+DSF V 
Sbjct: 119 --------------GDRHELATVTVDRGKLYTLAAQTNEKRWFKVKKLFERVVDSFSVA 163

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PLN00066	262	PsbP domain-containing protein 4; Provisional	100.0
PLN03152	241	hypothetical protein; Provisional	99.96
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	98.12
PRK11615	185	hypothetical protein; Provisional	94.43
COG5435	147	Uncharacterized conserved protein [Function unknow	94.38
PF10738	175	Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR	93.6
PF12712	153	DUF3805: Domain of unknown function (DUF3805); Int	93.31
PF07174	297	FAP: Fibronectin-attachment protein (FAP); InterPr	81.27

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=1.3e-61  Score=433.86  Aligned_cols=223  Identities=72%  Similarity=1.098  Sum_probs=205.7

Q ss_pred             cceeccccccccccCcchHHHHHHHH--HHhhhhccCCccccccccccCceeeeeCCCceEEeccCCceeeccCCcceEE
Q 025110           30 RKILSWPLLNLQAFAVPRRNAMALIL--SSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFY  107 (257)
Q Consensus        30 ~~~~~~~~~~~~~~~~~RR~~L~~~~--~a~~~s~~~~~~~A~ae~~~gf~~y~D~~dgY~f~yP~~W~~~~~~G~dv~f  107 (257)
                      |-.|.|..+...+++++||++|+..+  +..+++.++.+ .|+|.++ ||+.|.|+.|||+|+||.||+++++.|+|++|
T Consensus        62 ~~~~~~~~~~~~~~~~~rr~~~~~~l~~~~~~~s~~~~~-~a~a~~~-~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvF  139 (286)
T PLN00059         62 PVAINCLTDAKQVCAVGRRKSMMMGLLMSGLIVSEANLP-TAFASIP-VFREYIDTFDGYSFKYPQNWIQVRGAGADIFF  139 (286)
T ss_pred             CeeeecccchhhhhhhhhhhhhHHHHHHHHHHHHhhcCc-hhhcCCc-ccceeEcCCCCeEEeCCCCCeEeccCCCceEE
Confidence            34589999999999999999976543  33333444443 7888765 79999999999999999999999999999999


Q ss_pred             eCCCCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhhhhhhccccCCccceeEEeceeeeeCCCeeEEEEEEEe
Q 025110          108 RDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNI  187 (257)
Q Consensus       108 ~d~~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~~~~~str~g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~  187 (257)
                      ||+++.+|||||+|+|++++++++|+|||+|++||++|+++++++||+||+|++++++||++.+|++.||++||+|||.+
T Consensus       140 rD~Ie~~ENVSV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~V  219 (286)
T PLN00059        140 RDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNI  219 (286)
T ss_pred             eccCccccceEEEEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEE
Confidence            99999999999999998755799999999999999999999999999999999999999999999866999999999999


Q ss_pred             eccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccchHhhHHHHHHhcceeeee
Q 025110          188 KSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNK  254 (257)
Q Consensus       188 ~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~~W~k~~~~lr~vv~SFrv~~  254 (257)
                      ++++++||+|+|+.+|+|.+||.||+|++++|+|||||||++|+||++|.|+++.|++|++||+|.+
T Consensus       220 ks~~~~n~~~~~~qdr~~~~~w~RH~LA~v~V~nGkLYTL~~qtpE~RW~kvk~~f~~V~dSF~V~~  286 (286)
T PLN00059        220 KSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEK  286 (286)
T ss_pred             EcCcccccccccccccccccccceeeEEEEEEeCCEEEEEEcCCcHHHHHHHHHHHHHHHhheeecC
Confidence            9999999999999999999999999999999999999999999999999999999999999999975

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=1.3e-50  Score=363.44  Aligned_cols=204  Identities=22%  Similarity=0.291  Sum_probs=179.2

Q ss_pred             ccccceeccccccccccCcchHHHHHHHHHHhh-hhccCCcccccccc---------ccCceeeeeCCCceEEeccCCce
Q 025110           27 QMKRKILSWPLLNLQAFAVPRRNAMALILSSYI-FSDFGFRNTALAQQ---------SVGFREYIDTFDGYSFKYPQNWI   96 (257)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~RR~~L~~~~~a~~-~s~~~~~~~A~ae~---------~~gf~~y~D~~dgY~f~yP~~W~   96 (257)
                      +.+++++.|+++...+..++||.+|++++++++ .+.++|+.+||+|+         +.||.+|.  +|||+|+||.+|+
T Consensus        32 ~~~~~~~~~~~~~~~~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~--~dgY~FlyP~~W~  109 (260)
T PLN00042         32 ASRPSQVVCRAQEEDNSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYN--GDGFKLLVPSKWN  109 (260)
T ss_pred             CCCCcceeeeccccccccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEee--CCCeEEecCCCCc
Confidence            567888999999998889999999998877644 48889999999874         78999996  5999999999999


Q ss_pred             eec---cCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHH----HHHHHHHHhhhhhhccccCCcc------c
Q 025110           97 QVR---GAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKE----AGRKVLRQYLTEFMSTRLGVRR------E  163 (257)
Q Consensus        97 ~~~---~~G~dv~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspee----va~~l~~~~~~~~~str~g~~~------~  163 (257)
                      +++   .+|+|++|+|+++.++||+|+|+|+   ++++|+|||+|||    |++.|+++.+.+.  |+.+.++      +
T Consensus       110 ~~ke~~~~G~dv~f~D~~~~~eNVSV~Ispt---~k~sI~dlGsPee~l~~vgylL~kq~~a~~--t~s~~Gf~p~~vat  184 (260)
T PLN00042        110 PSKEREFPGQVLRFEDNFDATSNLSVMVTPT---DKKSITDYGSPEEFLSKVSYLLGKQAYSGE--TASEGGFDANAVAT  184 (260)
T ss_pred             cccccccCCceEEeeccccccccEEEEEecC---CcCCHhhcCCHHHHHHHHHHHHHhhhccCc--cccccCcCcccccc
Confidence            664   5699999999999999999999996   3689999999999    7888888888763  3333333      7


Q ss_pred             eeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccchHh-hHH
Q 025110          164 SNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEE-END  242 (257)
Q Consensus       164 a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~~W~k~-~~~  242 (257)
                      ++||++++|+ .||++||+|||.++.          |++    ++++||+|+++||.|||||||++|+||+||+|+ ++.
T Consensus       185 a~Lleas~re-~dGk~YY~lE~~~~~----------ad~----d~~~RH~LatatV~~GkLYtl~aqa~EkRW~K~~~k~  249 (260)
T PLN00042        185 AAVLESSTQE-VGGKPYYYLSVLTRT----------ADG----DEGGKHQLITATVSDGKLYICKAQAGDKRWFKGARKF  249 (260)
T ss_pred             eeEEEeeeEE-eCCeEEEEEEEEEec----------CCC----CCCCceEEEEEEEECCEEEEEEecCchhhhhHHHHHH
Confidence            8999999998 899999999999997          765    689999999999999999999999999999998 557


Q ss_pred             HHHHhcceee
Q 025110          243 LRQVIDSFRV  252 (257)
Q Consensus       243 lr~vv~SFrv  252 (257)
                      |+.|++||+|
T Consensus       250 l~~v~~SFsV  259 (260)
T PLN00042        250 VEGAASSFSV  259 (260)
T ss_pred             HHHHHhceec
Confidence            9999999997

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=2.7e-42  Score=295.32  Aligned_cols=158  Identities=44%  Similarity=0.718  Sum_probs=141.5

Q ss_pred             cccccCceeeeeCCCceEEeccCCceeeccCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhh
Q 025110           71 AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYL  150 (257)
Q Consensus        71 ae~~~gf~~y~D~~dgY~f~yP~~W~~~~~~G~dv~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~  150 (257)
                      +++..||++|.|+.+||+|.||++|+++++.|++++|+||.+..+||+|+|+|++.  ..+|+|||+|++||++|+++.+
T Consensus        17 ~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~--~~sl~~lGs~~~va~~l~~~~~   94 (175)
T PF01789_consen   17 AEASTGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPK--DFSLEDLGSPEEVAERLLNGEL   94 (175)
T ss_dssp             TT--SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-ST--S-SGGGG-SHHHHHHHHHHHCC
T ss_pred             ccCCCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCC--cCchhhcCCHHHHHHHHhhhhc
Confidence            45788999999999999999999999999999999999999999999999999864  4499999999999999999888


Q ss_pred             hhhhccccCCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEee
Q 025110          151 TEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ  230 (257)
Q Consensus       151 ~~~~str~g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~q  230 (257)
                      .++     ++++.++||++++++ .+|++||+|||.+++          |+      ++.||+|+++++.+||||+|++|
T Consensus        95 ~~~-----~~~~~a~li~a~~~~-~~g~~yY~~Ey~~~~----------~~------~~~rh~l~~~tv~~g~lY~l~~~  152 (175)
T PF01789_consen   95 ASP-----GSGREAELISASERE-VDGKTYYEYEYTVQS----------PN------EGRRHNLAVVTVKNGKLYTLTAQ  152 (175)
T ss_dssp             CHC-----TSSEEEEEEEEEEEE-ETTEEEEEEEEEEEE----------TT------EEEEEEEEEEEEETTEEEEEEEE
T ss_pred             ccc-----cCCcceEEEEeeeee-cCCccEEEEEEEecc----------CC------CcccEEEEEEEEECCEEEEEEEE
Confidence            774     445899999999999 789999999999987          43      37999999999999999999999


Q ss_pred             cCcccchHhhHHHHHHhcceee
Q 025110          231 TPENVFVEEENDLRQVIDSFRV  252 (257)
Q Consensus       231 a~e~~W~k~~~~lr~vv~SFrv  252 (257)
                      ++|++|+++++.|++|++||+|
T Consensus       153 a~e~~w~k~~~~l~~iv~SF~v  174 (175)
T PF01789_consen  153 APESRWDKVEPKLRKIVDSFRV  174 (175)
T ss_dssp             EEHHHHHTCHHHHHHHHHC-EE
T ss_pred             cCHHHHHHHHHHHHHHHhcEEe
Confidence            9999999999999999999998

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=3.9e-40  Score=295.36  Aligned_cols=183  Identities=17%  Similarity=0.225  Sum_probs=151.6

Q ss_pred             cCcchHHHHHHHHHHhhhhccCC-cccccc----------ccccCceeeeeC-----------CCceEEeccCCceeecc
Q 025110           43 FAVPRRNAMALILSSYIFSDFGF-RNTALA----------QQSVGFREYIDT-----------FDGYSFKYPQNWIQVRG  100 (257)
Q Consensus        43 ~~~~RR~~L~~~~~a~~~s~~~~-~~~A~a----------e~~~gf~~y~D~-----------~dgY~f~yP~~W~~~~~  100 (257)
                      ....||++|.+++.+.+++.... ++.|+.          +...||..|...           ..||+|+||.+|+++++
T Consensus        41 ~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~V  120 (263)
T PLN00067         41 VVIHRRELLLGLALAPLILIAPEPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTRV  120 (263)
T ss_pred             chhHHHHHHhhhhhhhhhhccCCchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCccc
Confidence            45789999998866555443333 333332          124588888653           45899999999999888


Q ss_pred             C----C-----------cceEEeCCCCCCCcEEEEEeCCCC---CCCCCcccCCChHHHHHHHHHHhhhhhhccccCCcc
Q 025110          101 A----G-----------ADIFYRDPYVLDENVSVELSSPSS---SRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRR  162 (257)
Q Consensus       101 ~----G-----------~dv~f~d~~~~~~nVsV~isp~~~---~~~~si~dlGspeeva~~l~~~~~~~~~str~g~~~  162 (257)
                      +    |           +|++|+|+.  ++||+|+|+|+..   .+.++|+|||+|++|+++|++...+       ++++
T Consensus       121 s~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g-------~~~~  191 (263)
T PLN00067        121 ANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTG-------NSYD  191 (263)
T ss_pred             cccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhc-------CCCC
Confidence            5    4           799999954  7899999999732   2468999999999999999887665       3468


Q ss_pred             ceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccchHhhHH
Q 025110          163 ESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEEND  242 (257)
Q Consensus       163 ~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~~W~k~~~~  242 (257)
                      +++||++++++ .||++||+|||.++.          ++       ++||+|+++++++|+||||++|++|+||+|+++.
T Consensus       192 ~~eLLeAs~re-~dGktYY~~E~~tp~----------a~-------~gRHnLataTV~~GkLYtf~asanEkRW~K~k~~  253 (263)
T PLN00067        192 PDELLETSVEK-IGDQTYYKYVLETPF----------AL-------TGSHNLAKATAKGNTVVLFVVSASDKQWQSSEKT  253 (263)
T ss_pred             CcceEEeeeEe-eCCeEEEEEEEEecC----------CC-------CCceEEEEEEEECCEEEEEEecCCHHHHHHHHHH
Confidence            88999999999 799999999999976          43       6999999999999999999999999999999999


Q ss_pred             HHHHhcceee
Q 025110          243 LRQVIDSFRV  252 (257)
Q Consensus       243 lr~vv~SFrv  252 (257)
                      |++|++||+|
T Consensus       254 l~~V~dSFsV  263 (263)
T PLN00067        254 LKAILDSFQA  263 (263)
T ss_pred             HHHHHHhccC
Confidence            9999999986

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=100.00  E-value=3.1e-38  Score=285.11  Aligned_cols=179  Identities=26%  Similarity=0.381  Sum_probs=148.3

Q ss_pred             CcchHHHHHHHHHHhhhhccCCcccccc--------------c-cccCceeeeeCC-------------CceEEeccCCc
Q 025110           44 AVPRRNAMALILSSYIFSDFGFRNTALA--------------Q-QSVGFREYIDTF-------------DGYSFKYPQNW   95 (257)
Q Consensus        44 ~~~RR~~L~~~~~a~~~s~~~~~~~A~a--------------e-~~~gf~~y~D~~-------------dgY~f~yP~~W   95 (257)
                      .++||.+|+.+++++.++.++.+..++|              + ...||++|..+.             .+|+|+||.+|
T Consensus        44 ~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~GW  123 (262)
T PLN00066         44 AVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGW  123 (262)
T ss_pred             hhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCCCC
Confidence            5799999998766544333444333332              1 246788888753             57999999999


Q ss_pred             eeeccC-----CcceEEeCCCCCCCcEEEEEeCCC-----CCCCCCcccCCChHHHHHHHHHHhhhhhhccccCCcccee
Q 025110           96 IQVRGA-----GADIFYRDPYVLDENVSVELSSPS-----SSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESN  165 (257)
Q Consensus        96 ~~~~~~-----G~dv~f~d~~~~~~nVsV~isp~~-----~~~~~si~dlGspeeva~~l~~~~~~~~~str~g~~~~a~  165 (257)
                      +++.++     |+++.|++..+.++||+|+|+|+.     ..++++|+|||+||+|++.|++++++.       ..++++
T Consensus       124 ~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~-------~~~e~e  196 (262)
T PLN00066        124 EEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGE-------PVEEGK  196 (262)
T ss_pred             eEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCC-------Cccccc
Confidence            999887     777777766678899999999984     126899999999999999999987764       246899


Q ss_pred             EEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccchHhhHHHHH
Q 025110          166 ILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQ  245 (257)
Q Consensus       166 ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~~W~k~~~~lr~  245 (257)
                      ||++++++ .||++||+|||   .                     ||+|+++||.+||||+|++|+||+||+|+++.|++
T Consensus       197 Ll~a~~re-~dGktYY~~E~---~---------------------rH~LasaTV~~GrLYt~~asape~rW~k~~~~lr~  251 (262)
T PLN00066        197 VLSMEVAE-HSGRTYYQFEL---P---------------------PHTLVTATAAGNRVYIFSVTANGLQWKRHYKDLKR  251 (262)
T ss_pred             eeEeeeee-cCCcEEEEEEE---e---------------------CceEEEEEEECCEEEEEEeecchHhhHHHHHHHHH
Confidence            99999988 79999999999   2                     59999999999999999999999999999999999


Q ss_pred             Hhcceeeee
Q 025110          246 VIDSFRVNK  254 (257)
Q Consensus       246 vv~SFrv~~  254 (257)
                      |++||+|+.
T Consensus       252 v~dSF~V~~  260 (262)
T PLN00066        252 IAKSFRVVT  260 (262)
T ss_pred             Hhhceeeec
Confidence            999999964

>PLN03152 hypothetical protein; Provisional

Probab=99.96  E-value=9.4e-29  Score=217.19  Aligned_cols=177  Identities=20%  Similarity=0.252  Sum_probs=131.0

Q ss_pred             cccCcchHHHHHHHHHHhhhhcc--CCcccccccc-------------ccCceeeeeCCCceEEeccCCceeeccC----
Q 025110           41 QAFAVPRRNAMALILSSYIFSDF--GFRNTALAQQ-------------SVGFREYIDTFDGYSFKYPQNWIQVRGA----  101 (257)
Q Consensus        41 ~~~~~~RR~~L~~~~~a~~~s~~--~~~~~A~ae~-------------~~gf~~y~D~~dgY~f~yP~~W~~~~~~----  101 (257)
                      ..|+.+||+++.-.+++.++++.  .+.+.+++++             ...|-.|.  ++||++-||..+...-.+    
T Consensus        27 ~~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~--g~gf~~~~pp~f~di~e~~~~~  104 (241)
T PLN03152         27 SRCGASRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFY--GDGFSIRVPPSFEDIMEPEDYN  104 (241)
T ss_pred             ccccccccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhh--CCceEEeCCCChhhhcChhhcc
Confidence            45678899998766554444333  3344455542             22233332  799999999887653211    


Q ss_pred             ------C-------cceEEeCCCCCCCcEEEEEeCCC-----CCCCCCcccCCChHHHHHHHHHHhhhhhhccccCCc-c
Q 025110          102 ------G-------ADIFYRDPYVLDENVSVELSSPS-----SSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVR-R  162 (257)
Q Consensus       102 ------G-------~dv~f~d~~~~~~nVsV~isp~~-----~~~~~si~dlGspeeva~~l~~~~~~~~~str~g~~-~  162 (257)
                            |       -.++|..| |..|||||+|+|++     -.+.++|.|||+|+|||+.++     +     .|.. .
T Consensus       105 ~g~~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVgkv~v-----P-----~g~~~~  173 (241)
T PLN03152        105 AGLSLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFV-----P-----GGATLY  173 (241)
T ss_pred             cccceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCChhHcCCHHHHHHhhC-----C-----Cccccc
Confidence                  2       14678876 67999999999974     114899999999999997765     2     1210 1


Q ss_pred             ceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccchHhhHH
Q 025110          163 ESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEEND  242 (257)
Q Consensus       163 ~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~~W~k~~~~  242 (257)
                      .++.++. +++ .||++||+|||.+.                     .||.|++++|.+||||||+++++|+||+|++++
T Consensus       174 saR~iel-~~E-~dGKtYY~lEy~v~---------------------~RH~LaTVaVsrGKLYTl~aSt~EkRW~Kvk~k  230 (241)
T PLN03152        174 SARTIKV-KEE-EGIRTYYFYEFGRD---------------------EQHVALVATVNSGKAYIAGATAPESKWDDDGVK  230 (241)
T ss_pred             ccceeee-eee-cCCceeEEEEEEeC---------------------CcEEEEEEEEcCCeEEEEecCCchhchHHHHHH
Confidence            3444444 345 79999999999972                     699999999999999999999999999999999


Q ss_pred             HHHHhcceeee
Q 025110          243 LRQVIDSFRVN  253 (257)
Q Consensus       243 lr~vv~SFrv~  253 (257)
                      |+.+++||.|+
T Consensus       231 fr~aa~SFsV~  241 (241)
T PLN03152        231 LRSAAISLTVL  241 (241)
T ss_pred             HHHHHhheeeC
Confidence            99999999985

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=98.12  E-value=0.00017  Score=58.47  Aligned_cols=127  Identities=12%  Similarity=0.088  Sum_probs=84.6

Q ss_pred             EEeccCCceeeccCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhhhhhhccccCCccceeEE
Q 025110           88 SFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNIL  167 (257)
Q Consensus        88 ~f~yP~~W~~~~~~G~dv~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~~~~~str~g~~~~a~ll  167 (257)
                      +|..|.+|.....  +...+.|+....-|+.|+..+++.  .      .+.++...+.+++.-..        ...-+++
T Consensus         3 ~~~lP~~~~D~t~--nv~~~~~~~~~~~slvIsR~~l~~--g------~tl~~~~~~q~~~l~~~--------l~~~~~~   64 (130)
T PF08786_consen    3 SLTLPDGWQDRTM--NVLVLPDSGGSGPSLVISRDPLPD--G------ETLEDYLQRQLAQLRKQ--------LPGFQLV   64 (130)
T ss_dssp             EEEEETTSEE--B--EEEEE--BTTB-EEEEEEEE---T--T------S-HHHHHHHHHHHHHCC--------STT-EEE
T ss_pred             eEeCCCcceeceE--EEEEccCCCCCcceEEEEeccCCC--C------CCHHHHHHHHHHHHHhh--------CCCcEEE
Confidence            5788999998665  234455543334566666666542  2      35566666655543221        2345666


Q ss_pred             eceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEEC-CEEEEEEeecCcccchHhhHHHHHH
Q 025110          168 STSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVEN-NRLYELRLQTPENVFVEEENDLRQV  246 (257)
Q Consensus       168 ~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~-gkLYtl~~qa~e~~W~k~~~~lr~v  246 (257)
                      +...-+ .+|.+-+.++|.-..          .       ...-|+..++...+ +++|+|+.+++....+..++.++.|
T Consensus        65 ~~~~~~-l~~~~a~~l~~~~~~----------~-------g~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~~~~~~~~~~i  126 (130)
T PF08786_consen   65 ERQPIT-LGGRPARELEYSFRS----------G-------GQPVYQRQAAVLLPGRRVLVFTYTAPGPFTEEQRAHWEAI  126 (130)
T ss_dssp             EEEEEE-ETTEEEEEEEEEEEE----------T-------TCEEEEEEEEEEEC-CCEEEEEEEEECCCHHHHHHHHHHH
T ss_pred             eeEEEE-eCCCCeEEEEEEEee----------C-------CEEEEEEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence            655555 789999999999876          2       25678888888888 9999999999999999999999999


Q ss_pred             hcce
Q 025110          247 IDSF  250 (257)
Q Consensus       247 v~SF  250 (257)
                      ++||
T Consensus       127 ~~Sf  130 (130)
T PF08786_consen  127 LKSF  130 (130)
T ss_dssp             HCT-
T ss_pred             HhcC
Confidence            9998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>PRK11615 hypothetical protein; Provisional

Probab=94.43  E-value=3.2  Score=36.41  Aligned_cols=133  Identities=15%  Similarity=0.210  Sum_probs=86.3

Q ss_pred             CCceEEeccCCceeeccC-Cc----ceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhhhhhhcccc
Q 025110           84 FDGYSFKYPQNWIQVRGA-GA----DIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRL  158 (257)
Q Consensus        84 ~dgY~f~yP~~W~~~~~~-G~----dv~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~~~~~str~  158 (257)
                      ..+.+|.+|.++...... |+    --.|-|+.  ...+-++|-+.    . +-++   .+..+.+|.++--.     | 
T Consensus        47 dGKl~FtLPag~sdqsgk~Gtq~nn~~vYad~t--g~kavIVi~gD----~-~~~~---Ld~la~rl~~qQr~-----r-  110 (185)
T PRK11615         47 DGKLSFTLPADMSDQSGKLGTQANNMHVYADAT--GQKAVIVILGD----D-TNED---LAVLAKRLEDQQRS-----R-  110 (185)
T ss_pred             ccEEEEEcCCccccccccccccccceEEEEcCC--CCEEEEEEeCC----C-Chhh---HHHHHHHHHHHHHh-----h-
Confidence            467999999999965443 32    34677743  34443333321    1 1122   34566777665322     1 


Q ss_pred             CCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccchH
Q 025110          159 GVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVE  238 (257)
Q Consensus       159 g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~~W~k  238 (257)
                        ...-.++.-+.-+ .+|+++++++-.+...           |      ..--.-++++..++||-||.+..|.+.-.+
T Consensus       111 --dp~lqvvsnK~i~-i~G~~~qQLDS~~t~~-----------G------qk~~SSvvL~~v~~rl~tlQitlpA~nqqq  170 (185)
T PRK11615        111 --DPQLQVVTNKAIE-LKGHKLQQLDSIISAK-----------G------QTAYSSVVLGKVDNQLLTMQITLPADNQQQ  170 (185)
T ss_pred             --CcCceeecceeEE-ECCeeeEEeeeeeecC-----------C------ceEEEEEEEEeeCCeEEEEEEecCCCCHHH
Confidence              1234556555555 7999999999888651           1      223333456777999999999999999888


Q ss_pred             hhHHHHHHhcceee
Q 025110          239 EENDLRQVIDSFRV  252 (257)
Q Consensus       239 ~~~~lr~vv~SFrv  252 (257)
                      .....+.|+++..+
T Consensus       171 aq~~ae~ii~tl~~  184 (185)
T PRK11615        171 AQTTAENIINTLVI  184 (185)
T ss_pred             HHHHHHHHHhheec
Confidence            88889999988764

>COG5435 Uncharacterized conserved protein [Function unknown]

Probab=94.38  E-value=0.75  Score=39.01  Aligned_cols=133  Identities=19%  Similarity=0.162  Sum_probs=78.6

Q ss_pred             EEeccCCceeeccCCcceEEeCCCCCCCcEEEEEe--CCCCCCCCCcccCCChHHHHHHHHHHhhhhhhccccCCcccee
Q 025110           88 SFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELS--SPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESN  165 (257)
Q Consensus        88 ~f~yP~~W~~~~~~G~dv~f~d~~~~~~nVsV~is--p~~~~~~~si~dlGspeeva~~l~~~~~~~~~str~g~~~~a~  165 (257)
                      .|.+|+.|.-..+.  ...+.++.  ..-++.+|+  ++..       +-..+ +...+.+..+-..     .+   .-+
T Consensus        10 ~l~lP~~w~DrSvN--vf~~~~~g--t~~~sfvIsRd~~~~-------g~~~~-~y~~rql~~l~k~-----Lp---gy~   69 (147)
T COG5435          10 TLELPAAWQDRSVN--VFVSGDNG--TSGFSFVISRDPLEP-------GDTFP-EYVQRQLALLRKQ-----LP---GYE   69 (147)
T ss_pred             eEcCcchhccceEE--EEEecCCC--cceeEEEEecCCCCC-------CCcHH-HHHHHHHHHHHhh-----CC---CeE
Confidence            68899999976542  23345543  333444444  3321       11223 3333332221111     11   134


Q ss_pred             EEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccce-EEEEEEEEECCEEEEEEeecCcccchHhhHHHH
Q 025110          166 ILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDR-RYLSVLGVENNRLYELRLQTPENVFVEEENDLR  244 (257)
Q Consensus       166 ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~R-H~l~~~tv~~gkLYtl~~qa~e~~W~k~~~~lr  244 (257)
                      +..-.+-+ ++|..-...+|.-.+          |.     .+++| +++.+..-.++++-++++.++..-=++.++...
T Consensus        70 ~~~~~e~~-v~~~aa~~~~y~w~~----------~~-----~~~r~v~q~~~~i~~g~~vLifT~Tt~~~ftp~q~~~~~  133 (147)
T COG5435          70 LHHRREIE-VGGAAAPLLDYQWTS----------PE-----GEQRRVQQRQVFIERGDTVLIFTLTTPGEFTPSQKKAWE  133 (147)
T ss_pred             Eeeccccc-cCccccceeEEEeec----------CC-----CCCceEEEEEeecccCCeEEEEEecCCCCCCHHHHHHHH
Confidence            44443333 688877777777765          31     23444 444554455789999999999999999999999


Q ss_pred             HHhcceeeeecc
Q 025110          245 QVIDSFRVNKVS  256 (257)
Q Consensus       245 ~vv~SFrv~~~~  256 (257)
                      +++.||....-+
T Consensus       134 ~~I~Sf~p~~~~  145 (147)
T COG5435         134 QVIQSFVPNPPE  145 (147)
T ss_pred             HHHHhcCCCCCC
Confidence            999999876544

>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein []

Probab=93.60  E-value=2.3  Score=36.94  Aligned_cols=130  Identities=17%  Similarity=0.124  Sum_probs=75.6

Q ss_pred             eEEeccCCceeeccCCc---c--eEEeCC-CCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHH--hhhhhhcccc
Q 025110           87 YSFKYPQNWIQVRGAGA---D--IFYRDP-YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQ--YLTEFMSTRL  158 (257)
Q Consensus        87 Y~f~yP~~W~~~~~~G~---d--v~f~d~-~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~--~~~~~~str~  158 (257)
                      -++-.|.||.....+..   -  +..... ....-|+.|+|..+.+       +|. |+|+.+.=-..  .+..      
T Consensus        33 v~lP~P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~G-------~~D-p~e~l~~a~~d~~~l~g------   98 (175)
T PF10738_consen   33 VSLPTPPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLTG-------DFD-PAEALEHAPADAQNLPG------   98 (175)
T ss_pred             EeccCCcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEeccC-------CCC-HHHHHHhchhhHhhCcC------
Confidence            56667899998755422   1  222221 1123588899988764       443 55554421111  1111      


Q ss_pred             CCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEE--ECC--EEEEEEeecCcc
Q 025110          159 GVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGV--ENN--RLYELRLQTPEN  234 (257)
Q Consensus       159 g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv--~~g--kLYtl~~qa~e~  234 (257)
                           .+-++.+.-+ -+|-+-+.+|-.-+.          .+       ..+|....+.|  .++  +|..|++++.+.
T Consensus        99 -----~~~~~~s~~~-~~GfpS~~i~GtY~~----------~g-------~~~~~~~r~VV~~~~~~~Ylvqltvt~~~~  155 (175)
T PF10738_consen   99 -----FRELDGSPSD-FSGFPSSQIEGTYDK----------DG-------MRLHTSQRTVVIPGDDQRYLVQLTVTTTAD  155 (175)
T ss_pred             -----cccccCCccc-cCCCceeEEEEEEee----------CC-------EEeEeEEEEEEEeCCCcEEEEEEEeecccc
Confidence                 2244444444 688888888844432          11       12333322222  233  666788889999


Q ss_pred             cchHhhHHHHHHhcceeee
Q 025110          235 VFVEEENDLRQVIDSFRVN  253 (257)
Q Consensus       235 ~W~k~~~~lr~vv~SFrv~  253 (257)
                      +-....+..+.|++.|+|.
T Consensus       156 qa~~~~~a~~aI~~g~~It  174 (175)
T PF10738_consen  156 QAVALADATEAIDEGFTIT  174 (175)
T ss_pred             chhhhhhHHHHHHcCCEec
Confidence            9999999999999999985

>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown

Probab=93.31  E-value=4.4  Score=34.22  Aligned_cols=130  Identities=18%  Similarity=0.351  Sum_probs=63.8

Q ss_pred             eeeeeCCCceEEeccCCceeeccCCcc-eEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhhhhhhcc
Q 025110           78 REYIDTFDGYSFKYPQNWIQVRGAGAD-IFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMST  156 (257)
Q Consensus        78 ~~y~D~~dgY~f~yP~~W~~~~~~G~d-v~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~~~~~st  156 (257)
                      .-|..+..=|+..||.+|.+.. .|.+ ..|.||..=.+|..+..-.  +         |+. ..|+..+++.+..    
T Consensus         2 kKfiSpg~WFS~~YP~~W~EfE-D~E~sflFYnp~~WTGNfRISayk--~---------~~~-~ygk~~i~~EL~e----   64 (153)
T PF12712_consen    2 KKFISPGAWFSMEYPADWNEFE-DGEGSFLFYNPDQWTGNFRISAYK--G---------GSA-QYGKECIRQELKE----   64 (153)
T ss_dssp             EEEE-GGG-EEEEE-TT-EEE----TTEEEEE-SSS---EEEEEEEE-------------ST-THHHHHHHHHHHH----
T ss_pred             CcccCCCceEEEecCCCcchhc-cCCcceEEEChHHhcCceEEEEEe--c---------ccc-cchHHHHHHHHHh----
Confidence            4566667779999999999987 3444 4689998878888655432  1         111 3455555655554    


Q ss_pred             ccCCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccc
Q 025110          157 RLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVF  236 (257)
Q Consensus       157 r~g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~~W  236 (257)
                          +..+.++....     ..--|.-|.--..            |    ....-|.  -+|-.++..|.|..+.+-..=
T Consensus        65 ----n~~a~~vkvg~-----~~caYs~E~f~ee------------g----~~YtsH~--Wvtg~~~~sfeCSFTv~kg~~  117 (153)
T PF12712_consen   65 ----NPSAKLVKVGN-----WECAYSKEMFQEE------------G----AYYTSHL--WVTGEGDVSFECSFTVPKGES  117 (153)
T ss_dssp             -----TT-EEEEETT-----EEEEEEEEEEEET------------T----EEEEEEE--EEEEETTEEEEEEEEEETT--
T ss_pred             ----CCCcceEEecc-----EEEEEEhhhhhcc------------C----eeEEEEE--EEEecCceEEEEEEEccCCCC
Confidence                22344544422     2234444443321            1    1122343  456778889988887764332


Q ss_pred             hHhhHHHHHHhcceeeee
Q 025110          237 VEEENDLRQVIDSFRVNK  254 (257)
Q Consensus       237 ~k~~~~lr~vv~SFrv~~  254 (257)
                         ....+.|+.|..|.+
T Consensus       118 ---~~~aE~iiasL~vR~  132 (153)
T PF12712_consen  118 ---VKEAEEIIASLEVRK  132 (153)
T ss_dssp             ----HHHHHHHHH-EE--
T ss_pred             ---cchHHHHHhhheehh
Confidence               334667788887765

In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.

>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP)

Probab=81.27  E-value=23  Score=33.17  Aligned_cols=102  Identities=21%  Similarity=0.336  Sum_probs=53.3

Q ss_pred             eeeeCCCceEEeccCCceeeccC----CcceEEeCCCC--------C-CCcEEEEEeCCCCCCCCCcccCCChHHHHHHH
Q 025110           79 EYIDTFDGYSFKYPQNWIQVRGA----GADIFYRDPYV--------L-DENVSVELSSPSSSRYKSVEDLGPPKEAGRKV  145 (257)
Q Consensus        79 ~y~D~~dgY~f~yP~~W~~~~~~----G~dv~f~d~~~--------~-~~nVsV~isp~~~~~~~si~dlGspeeva~~l  145 (257)
                      ++.|..-||+|.+|.||++.+-.    |..+.-+-..+        . .+.-+|++..+..+-|.+.+  -+-...|.+|
T Consensus       111 rvdn~~gGFS~vvP~GW~~Sda~~L~yG~alls~~~~~~~~~~~~~p~andt~v~lgrld~kl~a~ae--~dn~kaa~rl  188 (297)
T PF07174_consen  111 RVDNAAGGFSYVVPAGWVESDASHLDYGSALLSKQTGEPPMPGQPPPVANDTSVVLGRLDLKLFASAE--PDNTKAAVRL  188 (297)
T ss_pred             cccccccceEEeccCCccccccceeecceeeeccCCCCCCCCCCCCCcCCCceEEecccccccccccc--CChHHHHHHH
Confidence            45556789999999999987643    44333221111        1 12345555554221122221  1233577888


Q ss_pred             HHHhhhhhhc---cccCCccceeEEeceeeeeCCC-eeEEEEEEEe
Q 025110          146 LRQYLTEFMS---TRLGVRRESNILSTSSRVADDG-RLYYLVEVNI  187 (257)
Q Consensus       146 ~~~~~~~~~s---tr~g~~~~a~ll~a~sr~~~dG-~~YY~~Ey~~  187 (257)
                      ..++-.-||-   ||  .+++..-|++.-   ..| --||+..|.=
T Consensus       189 ~sdmgeffmp~pg~r--inq~~~~l~~~g---~~g~asyyevkf~d  229 (297)
T PF07174_consen  189 ASDMGEFFMPYPGTR--INQETTPLDANG---MPGSASYYEVKFTD  229 (297)
T ss_pred             hccccceeccCCCcc--ccccccccccCC---cccceeEEEEEecc
Confidence            7764333332   33  256777777632   233 4566665543

Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	257
2xb3_A	165	The Structure Of Cyanobacterial Psbp Length = 165		9e-17
2lnj_A	170	Solution Structure Of Cyanobacterial Psbp (Cyanop)		8e-07

>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp Length = 165

Iteration: 1
 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 21/178 (11%)
Query: 76  GFREYIDTFDGYSFKYPQNWIQVRGAG-ADIFYRDPYVLDENVSVELXXXXXXRYKSVED 134
           G + Y+D++DGY F YP+ W+QV+     D+ + D     ENVSV +        KS+E+
Sbjct: 7   GLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVAST--KSLEE 64
Query: 135 LGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNN 194
           LG P+E G ++LR  +    S      R S +++ +S+ ADD + YY++E  +       
Sbjct: 65  LGSPEEVGDRLLRNIIAPSES-----GRSSALIAATSQKADD-KTYYILEYAV------- 111
Query: 195 ELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRV 252
               +P D   N    R  LS + V   ++Y L +  PE  + + E+  + ++ SF V
Sbjct: 112 ---TLPGDG--NTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFTV 164

>pdb|2LNJ|A Chain A, Solution Structure Of Cyanobacterial Psbp (Cyanop) From Synechocystis Sp. Pcc 6803 Length = 170

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 77  FREYIDTFDGYSFKYPQNWI--QVRGA--GADIFYRDPYVLDENVSVELXXXXXXRYKSV 132
            + Y DT DGY F YP  WI   V+GA  G D+ +RD    DEN+SV +        K++
Sbjct: 14  LQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSD--KTL 71
Query: 133 EDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVE 184
            DLG   + G + ++              R++ +++  +R  +DG++YY +E
Sbjct: 72  TDLGTATDVGYRFMKTVNDASQG-----DRQAELINAEAR-DEDGQVYYTLE 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	2e-38
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	4e-37
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	2e-34
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	6e-34

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score =  131 bits (329), Expect = 2e-38
 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 21/183 (11%)

Query: 71  AQQSVGFREYIDTFDGYSFKYPQNWIQVRG-AGADIFYRDPYVLDENVSVELSSPSSSRY 129
           +  + G + Y+D++DGY F YP+ W+QV+     D+ + D     ENVSV +++ +S+  
Sbjct: 2   SSATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVAST-- 59

Query: 130 KSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKS 189
           KS+E+LG P+E G ++LR  +    S R      S +++ +S+ AD  + YY++E  +  
Sbjct: 60  KSLEELGSPEEVGDRLLRNIIAPSESGR-----SSALIAATSQKAD-DKTYYILEYAVTL 113

Query: 190 FANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDS 249
             + N                R  LS + V   ++Y L +  PE  + + E+  + ++ S
Sbjct: 114 PGDGNT------------AQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSS 161

Query: 250 FRV 252
           F V
Sbjct: 162 FTV 164

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score =  121 bits (304), Expect = 2e-34
 Identities = 35/194 (18%), Positives = 66/194 (34%), Gaps = 32/194 (16%)

Query: 71  AQQSVGFREYIDTFDGYSFKYPQNWIQVR---GAGADIFYRDPYVLDENVSVELSSPSSS 127
            +    F+ Y    DG+  + P  W   +     G  + + D +    NV V ++     
Sbjct: 3   PKTDTDFQTY--NGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDK- 59

Query: 128 RYKSVEDLGPPKEAGRKVLRQYLTEFMS--------TRLGVRRESNILSTSSRVADDGRL 179
             KS+ D G P++   +V      +  S                +N+L TS+     G+ 
Sbjct: 60  --KSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVG-GKQ 116

Query: 180 YYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENV-FVE 238
           YY + +  ++   N              E  +  L    V + +LY  + Q  +   F  
Sbjct: 117 YYYLSILTRTADGN--------------EGGKHQLVTATVNDGKLYICKAQAGDKRWFKG 162

Query: 239 EENDLRQVIDSFRV 252
            +  +     SF +
Sbjct: 163 AKKFVENTATSFSL 176

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score =  119 bits (300), Expect = 6e-34
 Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 28/181 (15%)

Query: 76  GFREYIDTFDGYSFKYPQNWIQVRGA----GADIFYRDPYVLDENVSVELSSPSSSRYKS 131
             + Y DT DGY F YP  WI V       G D+ +RD    DEN+SV +S   S   K+
Sbjct: 13  SLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSD--KT 70

Query: 132 VEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFA 191
           + DLG   + G + ++      ++      R++ +++  +R  +DG++YY +E  +    
Sbjct: 71  LTDLGTATDVGYRFMKT-----VNDASQGDRQAELINAEARD-EDGQVYYTLEYRVLVGD 124

Query: 192 NNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFR 251
           N                 +R  L+ +     +L    L T E+ +   ++    V  SF 
Sbjct: 125 N----------------VERHDLASVTTNRGKLITFDLSTAEDRWDTVKSLFDTVASSFH 168

Query: 252 V 252
           V
Sbjct: 169 V 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	100.0
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	100.0
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	98.43
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	97.56

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=100.00  E-value=5e-41  Score=282.94  Aligned_cols=161  Identities=31%  Similarity=0.630  Sum_probs=144.6

Q ss_pred             cccCceeeeeCCCceEEeccCCceeeccC-CcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhhh
Q 025110           73 QSVGFREYIDTFDGYSFKYPQNWIQVRGA-GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLT  151 (257)
Q Consensus        73 ~~~gf~~y~D~~dgY~f~yP~~W~~~~~~-G~dv~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~~  151 (257)
                      .+.||++|.|+.+||+|.||++|+++.++ |++++|+||.+..+||+|+|+|++  ++++|++||+|++|+++|+++.++
T Consensus         4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~--~~~~l~~~G~~e~va~~l~~~~~~   81 (165)
T 2xb3_A            4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVA--STKSLEELGSPEEVGDRLLRNIIA   81 (165)
T ss_dssp             --CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECS--SCCCSGGGCCHHHHHHHHHHHTTS
T ss_pred             CCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCC--CCCChHHcCCHHHHHHHHHHHhhc
Confidence            46799999999999999999999999998 999999999998999999999985  379999999999999999998877


Q ss_pred             hhhccccCCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeec
Q 025110          152 EFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQT  231 (257)
Q Consensus       152 ~~~str~g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa  231 (257)
                      +     +++++.++|+++++++ .||++||+|||.+++          |+++.  +++.||+|+++++++||||+|++|+
T Consensus        82 ~-----~~~~~~~~l~~a~~r~-~~G~~yY~~Ey~~~~----------~~~~~--~~~~rh~l~~~~v~~g~lY~l~~sa  143 (165)
T 2xb3_A           82 P-----SESGRSSALIAATSQK-ADDKTYYILEYAVTL----------PGDGN--TAQQRHNLSSIAVSRGKVYTLSVSA  143 (165)
T ss_dssp             C-----TTSSCEEEEEEEEEEE-ETTEEEEEEEEEEEC----------C-------CCEEEEEEEEEEETTEEEEEEEEE
T ss_pred             C-----CCCCcceEEEEeeeee-cCCceEEEEEEEEec----------CCCcc--CccccEEEEEEEEECCEEEEEEEec
Confidence            5     3668899999999997 899999999999987          54211  3589999999999999999999999


Q ss_pred             CcccchHhhHHHHHHhcceeee
Q 025110          232 PENVFVEEENDLRQVIDSFRVN  253 (257)
Q Consensus       232 ~e~~W~k~~~~lr~vv~SFrv~  253 (257)
                      ||++|+++++.|++|++||+++
T Consensus       144 pe~~w~~~~~~l~~v~~SF~v~  165 (165)
T 2xb3_A          144 PEERWPKVEDQFKTIVSSFTVY  165 (165)
T ss_dssp             EGGGHHHHHHHHHHHHHTCEEC
T ss_pred             CHHHhHHHHHHHHHHHhhEEeC
Confidence            9999999999999999999985

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=7e-41  Score=287.22  Aligned_cols=160  Identities=21%  Similarity=0.355  Sum_probs=129.4

Q ss_pred             cccCceeeeeCCCceEEeccCCceeec---cCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHH----HHHHH
Q 025110           73 QSVGFREYIDTFDGYSFKYPQNWIQVR---GAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKE----AGRKV  145 (257)
Q Consensus        73 ~~~gf~~y~D~~dgY~f~yP~~W~~~~---~~G~dv~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspee----va~~l  145 (257)
                      ++.||++|.  .+||+|+||.+|++++   .+|+|++|+|+++..+||+|+|+|++   .++|+|||+|++    |++.|
T Consensus         5 ~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~---~~si~dlGspe~~~~~v~~~l   79 (177)
T 1v2b_A            5 TDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTD---KKSITDFGSPEQFLSQVDYLL   79 (177)
T ss_dssp             --CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECS---CSSGGGGCSHHHHHHHTGGGC
T ss_pred             CCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCC---CCChhHCCCHHHHHHHHHHHH
Confidence            568999997  8999999999999765   45999999999999999999999973   589999999999    56677


Q ss_pred             HHHhhhhh-hcc---ccCCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEEC
Q 025110          146 LRQYLTEF-MST---RLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVEN  221 (257)
Q Consensus       146 ~~~~~~~~-~st---r~g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~  221 (257)
                      +++++.+. ++.   .++++++++||++++|+ .||++||+|||.+++          |++    +|+.||+|++++|+|
T Consensus        80 ~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~-~~G~~YY~~E~~~~~----------~~g----~e~~rH~l~~~tv~~  144 (177)
T 1v2b_A           80 GRQAYSGKTDSEGGFESDAVAIANVLETSTAE-VGGKQYYYLSILTRT----------ADG----NEGGKHQLVTATVND  144 (177)
T ss_dssp             ------------------CCCEEEEEEEEEEE-ETTEEEEEEEEEEEC-------------------CCEEEEEEEEEET
T ss_pred             HHHhhcccccccCCcccCcccceEEEEeEEEE-eCCeEEEEEEEEEec----------CCC----CccccEEEEEEEEEC
Confidence            77777641 110   13456899999999999 699999999999997          654    568999999999999


Q ss_pred             CEEEEEEeecCcccchHh-hHHHHHHhcceee
Q 025110          222 NRLYELRLQTPENVFVEE-ENDLRQVIDSFRV  252 (257)
Q Consensus       222 gkLYtl~~qa~e~~W~k~-~~~lr~vv~SFrv  252 (257)
                      ||||+|++|++|++|++. ++.|++|++||+|
T Consensus       145 gkLY~l~~~a~e~~W~k~~~~~l~~v~~SF~v  176 (177)
T 1v2b_A          145 GKLYICKAQAGDKRWFKGAKKFVENTATSFSL  176 (177)
T ss_dssp             TEEEEEEEEEEGGGCSTTTTHHHHHHHHTCEE
T ss_pred             CEEEEEEEecCHHHhhhhHHHHHHHHHhheec
Confidence            999999999999999995 9999999999998

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=100.00  E-value=1.2e-41  Score=289.06  Aligned_cols=158  Identities=28%  Similarity=0.484  Sum_probs=146.4

Q ss_pred             ccccCceeeeeCCCceEEeccCCceeeccC----CcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHH
Q 025110           72 QQSVGFREYIDTFDGYSFKYPQNWIQVRGA----GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLR  147 (257)
Q Consensus        72 e~~~gf~~y~D~~dgY~f~yP~~W~~~~~~----G~dv~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~  147 (257)
                      +.+.||++|.|+.|||+|+||++|++++++    |+|++|+||.+..+||+|+|+|++  +.++|+|||+|++|+++|++
T Consensus         9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~--~~~si~d~G~pe~va~~l~~   86 (170)
T 2lnj_A            9 VGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIP--SDKTLTDLGTATDVGYRFMK   86 (170)
Confidence            457899999999999999999999998887    999999999999999999999985  36999999999999999999


Q ss_pred             HhhhhhhccccCCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEE
Q 025110          148 QYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYEL  227 (257)
Q Consensus       148 ~~~~~~~str~g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl  227 (257)
                      +++++     +++++.++||++++++ .||++||+|||.+++          |+      ++.||+|+++++++|+||+|
T Consensus        87 ~~~~~-----~~~~~~a~li~a~~~~-~~G~~yY~~Ey~~~~----------~~------~~~rh~l~~~~v~~gklY~l  144 (170)
T 2lnj_A           87 TVNDA-----SQGDRQAELINAEARD-EDGQVYYTLEYRVLV----------GD------NVERHDLASVTTNRGKLITF  144 (170)
Confidence            98876     3678899999999997 899999999999987          53      37999999999999999999


Q ss_pred             EeecCcccchHhhHHHHHHhcceeee
Q 025110          228 RLQTPENVFVEEENDLRQVIDSFRVN  253 (257)
Q Consensus       228 ~~qa~e~~W~k~~~~lr~vv~SFrv~  253 (257)
                      ++|+||++|+++++.|++|++||+|+
T Consensus       145 ~~~ape~~w~~~~~~l~~v~~SF~v~  170 (170)
T 2lnj_A          145 DLSTAEDRWDTVKSLFDTVASSFHVY  170 (170)
Confidence            99999999999999999999999985

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=98.43  E-value=1.9e-05  Score=64.77  Aligned_cols=139  Identities=11%  Similarity=0.075  Sum_probs=92.8

Q ss_pred             ceeeeeCCCceEEeccCCceeeccCCcceEEeCCCCCC--CcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhhhhhh
Q 025110           77 FREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLD--ENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFM  154 (257)
Q Consensus        77 f~~y~D~~dgY~f~yP~~W~~~~~~G~dv~f~d~~~~~--~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~~~~~  154 (257)
                      +..|.  .+.++|.+|.+|....   ..|++-......  -|+.|...+++.  .      .+.++..++-+++....  
T Consensus         3 m~~y~--~~Egsl~lP~gw~D~t---~nv~~~~~~~~~g~~~lvIsR~~~~~--~------~~l~~~~~~q~~~l~~~--   67 (148)
T 1tu1_A            3 MTLYR--LHEADLEIPDAWQDQS---INIFKLPASGPAREASFVISRDASQG--D------APFADYVARQLENAEKQ--   67 (148)
T ss_dssp             EEEEE--CSSEEEEEETTSEECC---BEEEEECCBTTBCCEEEEEEEECCCT--T------SCHHHHHHHHHHHHHHH--
T ss_pred             CceEE--ECCEEEeCCCCcEeee---EEEEEcCCCCCCCceEEEEEeccCCC--C------CCHHHHHHHHHHHHHhh--
Confidence            56675  8999999999999443   234443322212  366666665532  1      34455544443332211  


Q ss_pred             ccccCCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcc
Q 025110          155 STRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPEN  234 (257)
Q Consensus       155 str~g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~  234 (257)
                            ...-+++.....+ .+|.+--.+||.-..          .       ...+|.+-++.+..+++|.|+.+++..
T Consensus        68 ------l~~y~~~~~~~~~-l~g~~a~~~e~~~~~----------~-------g~~~~Q~q~~~~~~~~~l~~t~t~~~~  123 (148)
T 1tu1_A           68 ------LPGFKLHKRWDIN-IHGHAAVLLDYQWQR----------E-------GRDLMLRQVFIERRPAVLITTLTTTPA  123 (148)
T ss_dssp             ------STTCEEEEEEEEE-ETTEEEEEEEEEEEE----------T-------TEEEEEEEEEECCSSSEEEEEEEECGG
T ss_pred             ------CcCcEEeeeEeEE-EcCCcEEEEEEEEcc----------C-------CEEEEEEEEEEEECCeEEEEEEEcCCC
Confidence                  1123344333333 478888888888765          2       357999999999877999999999999


Q ss_pred             cchHhhHHHHHHhcceeeee
Q 025110          235 VFVEEENDLRQVIDSFRVNK  254 (257)
Q Consensus       235 ~W~k~~~~lr~vv~SFrv~~  254 (257)
                      .|+..++.++.|++||++..
T Consensus       124 ~~~~~~~~~~~i~~Sf~~~~  143 (148)
T 1tu1_A          124 DLPHHEPAWKQAMQTLVPRP  143 (148)
T ss_dssp             GHHHHHHHHHHHHHTCEECC
T ss_pred             CCHHHHHHHHHHHHhcccCC
Confidence            99999999999999999754

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=97.56  E-value=0.0037  Score=52.45  Aligned_cols=133  Identities=12%  Similarity=0.091  Sum_probs=85.6

Q ss_pred             CceEEeccCCceeeccCCcceEEeCCC---CCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhhhhhhccccCCc
Q 025110           85 DGYSFKYPQNWIQVRGAGADIFYRDPY---VLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVR  161 (257)
Q Consensus        85 dgY~f~yP~~W~~~~~~G~dv~f~d~~---~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~~~~~str~g~~  161 (257)
                      -++++-.|.||......|.-+...+..   .-.-|+-|++.-...       |+  -|+.... +.++.+.        -
T Consensus        18 p~~~v~~P~gWe~~~~~~~~~~~~~~~~~~~F~pN~vVtv~r~~~-------~~--~e~~r~e-l~~~~~~--------l   79 (161)
T 3lyd_A           18 TGFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAAT-------GA--LHNQRTE-LDQRATQ--------L   79 (161)
T ss_dssp             CEEEEECCTTEEECTTSSSSEEEEESSCCSSSCCEEEEEEEEECT-------TH--HHHHHHH-HHHHHTT--------S
T ss_pred             ceeeccCCCCceEcCCCCceEEeccCCCCCCccccEEEEEEecCc-------HH--HHHHHHH-HHHHHhh--------C
Confidence            578999999999987666533333222   124588888887643       22  2332222 2332221        1


Q ss_pred             cceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceE---EEEEEEEECCEEEEE--EeecCcccc
Q 025110          162 RESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRR---YLSVLGVENNRLYEL--RLQTPENVF  236 (257)
Q Consensus       162 ~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH---~l~~~tv~~gkLYtl--~~qa~e~~W  236 (257)
                      ..-++++-...+ .+|.+-|..||.-..          |+       .+.+   ...++...++..|.+  ++++.+.+-
T Consensus        80 p~~~~~~r~~~~-~~G~pa~~iey~y~~----------~~-------~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~  141 (161)
T 3lyd_A           80 PDYAERGRTETT-VDGFPAYHIEYAYRH----------HG-------TITIAQMITLVEVSHPHAVDIIQLTATCAGDQT  141 (161)
T ss_dssp             TTCEEEEEEEEE-ETTEEEEEEEEEEEE----------TT-------TEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGH
T ss_pred             CCcEeecccccc-cCCcccEEEEEEEec----------CC-------CceEeeEEEEEEEecCCEEEEEEEEEEeccccc
Confidence            123344433344 799999999999644          33       3444   233444446766666  999999999


Q ss_pred             hHhhHHHHHHhcceeee
Q 025110          237 VEEENDLRQVIDSFRVN  253 (257)
Q Consensus       237 ~k~~~~lr~vv~SFrv~  253 (257)
                      +...+.++.|++||++.
T Consensus       142 ~~~~~d~q~iv~sl~v~  158 (161)
T 3lyd_A          142 ADYWDTFRLMHADLTVQ  158 (161)
T ss_dssp             HHHHHHHHHHHHTCEEE
T ss_pred             hHHHHHHHHHhheeEec
Confidence            99999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	257
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	1e-33

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  117 bits (295), Expect = 1e-33
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 32/189 (16%)

Query: 76  GFREYIDTFDGYSFKYPQNWIQVR---GAGADIFYRDPYVLDENVSVELSSPSSSRYKSV 132
            F+ Y    DG+  + P  W   +     G  + + D +    NV V ++       KS+
Sbjct: 2   DFQTY--NGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTD---KKSI 56

Query: 133 EDLGPPKEAGRKVLRQYLTEFMS--------TRLGVRRESNILSTSSRVADDGRLYYLVE 184
            D G P++   +V      +  S                +N+L TS+     G+ YY + 
Sbjct: 57  TDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAE-VGGKQYYYLS 115

Query: 185 VNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPEN-VFVEEENDL 243
           +  ++   N              E  +  L    V + +LY  + Q  +   F   +  +
Sbjct: 116 ILTRTADGN--------------EGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFV 161

Query: 244 RQVIDSFRV 252
                SF +
Sbjct: 162 ENTATSFSL 170

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	257
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	98.76

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=3.3e-40  Score=278.28  Aligned_cols=159  Identities=21%  Similarity=0.344  Sum_probs=130.3

Q ss_pred             cCceeeeeCCCceEEeccCCceeec---cCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhhh
Q 025110           75 VGFREYIDTFDGYSFKYPQNWIQVR---GAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLT  151 (257)
Q Consensus        75 ~gf~~y~D~~dgY~f~yP~~W~~~~---~~G~dv~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~~  151 (257)
                      .+|++|.|  |||+|+||++|+++.   ..|+|++|+||.+..+||+|+|+|+   ++++|++||+|+++++.++.....
T Consensus         1 ~~~~~y~~--dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~---~~~sl~~~G~p~~~~~~v~~~l~~   75 (171)
T d1v2ba_           1 TDFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPT---DKKSITDFGSPEQFLSQVDYLLGR   75 (171)
T ss_dssp             CCEEEEEC--SSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEEC---SCSSGGGGCSHHHHHHHTGGGC--
T ss_pred             CCcccccC--CCEEEECCCCCceecccCCCCceEEEeccccCCceEEEEEecC---CCcchhhccChHHHHHHHHHHHhh
Confidence            36999986  899999999999765   3489999999999999999999986   478999999999988887655443


Q ss_pred             hhhc--------cccCCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCE
Q 025110          152 EFMS--------TRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNR  223 (257)
Q Consensus       152 ~~~s--------tr~g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gk  223 (257)
                      .++.        ++.+.+++++|+++++++ .||++||+|||.+++          |++    .+++||+|++++|.+||
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~a~v~~a~~~~-~~G~~YY~~Ey~~~~----------~~~----~~~~rh~l~~~~v~~gr  140 (171)
T d1v2ba_          76 QAYSGKTDSEGGFESDAVAIANVLETSTAE-VGGKQYYYLSILTRT----------ADG----NEGGKHQLVTATVNDGK  140 (171)
T ss_dssp             ----------------CCCEEEEEEEEEEE-ETTEEEEEEEEEEEC-------------------CCEEEEEEEEEETTE
T ss_pred             hhhcccccccccccccccceeEEEEeeeee-cCCEEEEEEEEEEec----------CCC----CCcccEEEEEEEEeCCE
Confidence            3211        224557899999999999 799999999999987          554    46899999999999999


Q ss_pred             EEEEEeecCcccchHh-hHHHHHHhcceeee
Q 025110          224 LYELRLQTPENVFVEE-ENDLRQVIDSFRVN  253 (257)
Q Consensus       224 LYtl~~qa~e~~W~k~-~~~lr~vv~SFrv~  253 (257)
                      ||+|++|+||++|++. ++.|++|++||+|.
T Consensus       141 LYtl~~~~pe~~w~~~~~~~l~~~v~SF~v~  171 (171)
T d1v2ba_         141 LYICKAQAGDKRWFKGAKKFVENTATSFSLA  171 (171)
T ss_dssp             EEEEEEEEEGGGCSTTTTHHHHHHHHTCEEC
T ss_pred             EEEEEEecCHHHhhhhhHHHHHHHHhceEeC
Confidence            9999999999999985 56799999999983

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.76  E-value=2.9e-07  Score=72.98  Aligned_cols=140  Identities=9%  Similarity=0.034  Sum_probs=99.6

Q ss_pred             ceeeeeCCCceEEeccCCceeeccCCcceEEeCCCCC-CCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhhhhhhc
Q 025110           77 FREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVL-DENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMS  155 (257)
Q Consensus        77 f~~y~D~~dgY~f~yP~~W~~~~~~G~dv~f~d~~~~-~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~~~~~s  155 (257)
                      +..|.  .+.=+|.+|.+|.....  +.+.+.++... .-|+.|+..+++.        =.++++..++.+...-..   
T Consensus         3 ~~~Y~--~~Egs~~lP~gw~d~t~--ni~~~~~~~~~~~~~lvIsr~~l~~--------~~~l~~~~~~~~~~l~~~---   67 (144)
T d1tu1a_           3 MTLYR--LHEADLEIPDAWQDQSI--NIFKLPASGPAREASFVISRDASQG--------DAPFADYVARQLENAEKQ---   67 (144)
T ss_dssp             EEEEE--CSSEEEEEETTSEECCB--EEEEECCBTTBCCEEEEEEEECCCT--------TSCHHHHHHHHHHHHHHH---
T ss_pred             CceeE--EcCEEEeCCCCceeCcc--eEEEecCCCCCcceEEEEEeecCCC--------CCCHHHHHHHHHHHHHhh---
Confidence            45664  45559999999986543  22233343222 2367676666532        246677777666554332   


Q ss_pred             cccCCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCccc
Q 025110          156 TRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENV  235 (257)
Q Consensus       156 tr~g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~~  235 (257)
                           ...-++++...-+ .+|.+-+.+||.-..          +       +...|+..++.+.++++|+|+.+++...
T Consensus        68 -----l~~~~~~~~~~~~-l~g~pa~~~~~t~~~----------~-------~~~v~Q~q~~~~~~~~~~~lt~t~~~~~  124 (144)
T d1tu1a_          68 -----LPGFKLHKRWDIN-IHGHAAVLLDYQWQR----------E-------GRDLMLRQVFIERRPAVLITTLTTTPAD  124 (144)
T ss_dssp             -----STTCEEEEEEEEE-ETTEEEEEEEEEEEE----------T-------TEEEEEEEEEECCSSSEEEEEEEECGGG
T ss_pred             -----CCCcEEEeeEecc-cCCCcEEEEEEEEee----------C-------CEeEEEEEEEEEeCCCEEEEEEecCCcC
Confidence                 1235677665444 799999999999876          3       2578999999999999999999999999


Q ss_pred             chHhhHHHHHHhcceeeee
Q 025110          236 FVEEENDLRQVIDSFRVNK  254 (257)
Q Consensus       236 W~k~~~~lr~vv~SFrv~~  254 (257)
                      |+...+.++++++||+...
T Consensus       125 ~~~~~~~~~~il~Sf~p~p  143 (144)
T d1tu1a_         125 LPHHEPAWKQAMQTLVPRP  143 (144)
T ss_dssp             HHHHHHHHHHHHHTCEECC
T ss_pred             CHHHHHHHHHHHHhCccCC
Confidence            9999999999999999754