Citrus Sinensis ID: 025129

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MAEEKESTSIPLSQAENGGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVTLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVISPIERVARQGERIPLNRIM
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccEEEEEEEccccEEEEEEEccccccccccccccEEEEEEccccccccEEEEEEcccEEcccccHHHHHHHHHHcccccccccccHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEEEcccccccccccccEEEEEEccccccccEEEEEcHHHEEEccccHHHHHHHHHHcccEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maeekestsiplsqaenggedpedpvkspptssasstrQACCYVLQSWISkkfmtgcvVLFPVAVTFFITWWFVQFVdgffsplyehlgfdifglGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISaaispdqnttafKEVAiirhprvgeyaFGFITSTVTlqkdngdeelcsvfvptnhlyigdiflvsskeiirpnlsirEGIEIIVSggmtmpqvisPIERVArqgeriplnrim
Flexible Loop (DISEMBL)
maeekestsiplsqaenggedpedpvkspptssasstrQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISaaispdqntTAFKEVAIIRHPRVGEYAFGFITSTVTLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVISPiervarqgeriplnrim
Low Complexity Region (SEG)
MAEEKESTSIPLSQAENGGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITslvfvflvgvfvsswlGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVTLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVISPIERVARQGERIPLNRIM
Disordered region (IsUnstruct)
***************************************ACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVTLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVISPI****************
Disordered Region (DISOPRED)
***********************************************WISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQIS***********F*EVAIIRHPRVGEYAFGFITSTVT****NGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGM*************************
Disordered Region (DISEMBL)
**************************************QACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVTLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVISPIERVARQGERIPLNRIM
Disordered Region (DISPRO)
**************************************QACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVTLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQV********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEEKESTSIPLSQAENGGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVTLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVISPIERVARQGERIPLNRIM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
449448444	257	PREDICTED: uncharacterized protein LOC10	0.996	0.996	0.878	1e-128
356516319	258	PREDICTED: uncharacterized protein LOC10	0.996	0.992	0.852	1e-127
357464469	258	hypothetical protein MTR_3g095210 [Medic	0.996	0.992	0.848	1e-126
217072534	258	unknown [Medicago truncatula]	0.996	0.992	0.844	1e-124
358249218	258	uncharacterized protein LOC100792693 [Gl	0.996	0.992	0.856	1e-123
388496372	258	unknown [Lotus japonicus]	0.992	0.988	0.841	1e-122
225438477	255	PREDICTED: uncharacterized protein LOC10	0.988	0.996	0.856	1e-121
115441275	259	Os01g0867900 [Oryza sativa Japonica Grou	0.996	0.988	0.810	1e-120
212722772	258	COV1-like protein isoform 1 [Zea mays] g	0.992	0.988	0.806	1e-120
242059357	258	hypothetical protein SORBIDRAFT_03g04101	0.992	0.988	0.813	1e-120

>gi|449448444|ref|XP_004141976.1| PREDICTED: uncharacterized protein LOC101210357 [Cucumis sativus] gi|449497697|ref|XP_004160483.1| PREDICTED: uncharacterized LOC101210357 [Cucumis sativus]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/256 (87%), Positives = 247/256 (96%)

Query: 1   MAEEKESTSIPLSQAENGGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVVL 60
           MAEEKESTS+PLSQ +NGG+DPEDPVKSPP+S  SSTR+ACCYVLQSW+SKKFMTGCVVL
Sbjct: 1   MAEEKESTSVPLSQVDNGGQDPEDPVKSPPSSPNSSTRKACCYVLQSWVSKKFMTGCVVL 60

Query: 61  FPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVF 120
           FPVAVTFF+TWWF+QFVDGFFSPLYE LG DIFGLGFITSL+FVF VG+FVSSWLGST+F
Sbjct: 61  FPVAVTFFVTWWFIQFVDGFFSPLYERLGVDIFGLGFITSLLFVFFVGIFVSSWLGSTLF 120

Query: 121 WVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVT 180
           W+GEWFI+RMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVT
Sbjct: 121 WLGEWFIQRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVT 180

Query: 181 LQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVISP 240
           LQ+++ DEELCSVFVPTNHLYIGDIFLV+SK+IIRPNLSIREGIEIIVSGGMTMPQ+I+P
Sbjct: 181 LQRESEDEELCSVFVPTNHLYIGDIFLVNSKDIIRPNLSIREGIEIIVSGGMTMPQIITP 240

Query: 241 IERVARQGERIPLNRI 256
           +ERV RQG+RI LNRI
Sbjct: 241 LERVDRQGDRITLNRI 256

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516319|ref|XP_003526843.1| PREDICTED: uncharacterized protein LOC100801920 [Glycine max]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/257 (85%), Positives = 238/257 (92%), Gaps = 1/257 (0%)

Query: 1   MAEEKESTSIPLSQAENGG-EDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVV 59
           MAEEKESTSIPLSQ +N   +DPEDP KSP +S  SSTR+ACC+VLQSW+SKKFMTGCVV
Sbjct: 1   MAEEKESTSIPLSQGDNASRDDPEDPAKSPLSSPNSSTRRACCFVLQSWVSKKFMTGCVV 60

Query: 60  LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTV 119
           LFPVAVTFFITWWF+QFVDGFFSP+Y  LG D+FGLGF+TSL FVFL+GVFVSSW+G+TV
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPIYSRLGIDVFGLGFVTSLAFVFLIGVFVSSWMGATV 120

Query: 120 FWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 179
           FW+GEWFIKRMP VRH+YSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV
Sbjct: 121 FWIGEWFIKRMPLVRHIYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 180

Query: 180 TLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVIS 239
           TLQKDN DEELCSVFVPTNHLYIGDIFLV+SK+IIRPNLSIREGIEIIVSGGMTMPQ+IS
Sbjct: 181 TLQKDNEDEELCSVFVPTNHLYIGDIFLVNSKDIIRPNLSIREGIEIIVSGGMTMPQLIS 240

Query: 240 PIERVARQGERIPLNRI 256
           P+ER  R  ERI LNRI
Sbjct: 241 PVERATRPNERISLNRI 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464469|ref|XP_003602516.1| hypothetical protein MTR_3g095210 [Medicago truncatula] gi|355491564|gb|AES72767.1| hypothetical protein MTR_3g095210 [Medicago truncatula] gi|388521451|gb|AFK48787.1| unknown [Medicago truncatula]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/257 (84%), Positives = 238/257 (92%), Gaps = 1/257 (0%)

Query: 1   MAEEKESTSIPLSQAEN-GGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVV 59
           MAEEKESTSIPLSQA+N   EDPEDP K+PPTS  SSTR+ACC+VLQSW+SKKFMTGCVV
Sbjct: 1   MAEEKESTSIPLSQADNVSCEDPEDPAKTPPTSPNSSTRRACCFVLQSWVSKKFMTGCVV 60

Query: 60  LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTV 119
           LFPVAVTFFITWWF+QFVDGFFSPLY   G +IFGLGFITSL FVF++GVFVSSW+G+TV
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPLYSSFGVEIFGLGFITSLAFVFVIGVFVSSWMGATV 120

Query: 120 FWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 179
           FW+GEW IK+MP VRH+YSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV
Sbjct: 121 FWIGEWLIKQMPLVRHIYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 180

Query: 180 TLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVIS 239
           TLQK+N DEELCSVF+PTNHLYIGDI L++SK++IRPNLSIREGIEIIVSGGMTMPQVIS
Sbjct: 181 TLQKENEDEELCSVFIPTNHLYIGDIILINSKDVIRPNLSIREGIEIIVSGGMTMPQVIS 240

Query: 240 PIERVARQGERIPLNRI 256
           PIERVA   ERI LNRI
Sbjct: 241 PIERVAHPNERISLNRI 257

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072534|gb|ACJ84627.1| unknown [Medicago truncatula]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/257 (84%), Positives = 237/257 (92%), Gaps = 1/257 (0%)

Query: 1   MAEEKESTSIPLSQAEN-GGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVV 59
           MAEEKESTSIPLSQA+N   EDPEDP K+PPTS  SSTR+AC +VLQSW+SKKFMTGCVV
Sbjct: 1   MAEEKESTSIPLSQADNVSCEDPEDPAKTPPTSPNSSTRRACRFVLQSWVSKKFMTGCVV 60

Query: 60  LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTV 119
           LFPVAVTFFITWWF+QFVDGFFSPLY   G +IFGLGFITSL FVF++GVFVSSW+G+TV
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPLYSSFGVEIFGLGFITSLAFVFVIGVFVSSWMGATV 120

Query: 120 FWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 179
           FW+GEW IK+MP VRH+YSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV
Sbjct: 121 FWIGEWLIKQMPLVRHIYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 180

Query: 180 TLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVIS 239
           TLQK+N DEELCSVF+PTNHLYIGDI L++SK++IRPNLSIREGIEIIVSGGMTMPQVIS
Sbjct: 181 TLQKENEDEELCSVFIPTNHLYIGDIILINSKDVIRPNLSIREGIEIIVSGGMTMPQVIS 240

Query: 240 PIERVARQGERIPLNRI 256
           PIERVA   ERI LNRI
Sbjct: 241 PIERVAHPNERISLNRI 257

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249218|ref|NP_001240268.1| uncharacterized protein LOC100792693 [Glycine max] gi|255640177|gb|ACU20379.1| unknown [Glycine max]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/257 (85%), Positives = 238/257 (92%), Gaps = 1/257 (0%)

Query: 1   MAEEKESTSIPLSQAENGG-EDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVV 59
           MAEEKESTSIPLSQ EN   +DPEDP KSPP+S  SSTR+ACC+VLQSW+SKKFMTGCVV
Sbjct: 1   MAEEKESTSIPLSQGENASRDDPEDPAKSPPSSPNSSTRKACCFVLQSWVSKKFMTGCVV 60

Query: 60  LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTV 119
           LFPVAVTFFITWWF+QFVDGFFSP+Y  LG D+FGLGFITSL FVFL+GVFVSSW+G+TV
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPIYSRLGIDVFGLGFITSLAFVFLIGVFVSSWMGATV 120

Query: 120 FWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 179
           FW+GEWFIKRMP VRH+YSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV
Sbjct: 121 FWIGEWFIKRMPLVRHIYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 180

Query: 180 TLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVIS 239
            LQKDN DEELCSVFVPTNHLYIGDIFLV+SK+IIRPNLSIREGIEIIVSGGMTMPQ+IS
Sbjct: 181 ILQKDNEDEELCSVFVPTNHLYIGDIFLVNSKDIIRPNLSIREGIEIIVSGGMTMPQLIS 240

Query: 240 PIERVARQGERIPLNRI 256
           P+ER  R  ER+ LNRI
Sbjct: 241 PVERDTRPNERVSLNRI 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496372|gb|AFK36252.1| unknown [Lotus japonicus]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/258 (84%), Positives = 234/258 (90%), Gaps = 3/258 (1%)

Query: 1   MAEEKESTSIPLSQAENGG--EDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCV 58
           M EEKESTSIPLSQAE+    +DPEDP KSPP S  SSTR+ACC+VLQSW SKKFMTGCV
Sbjct: 1   MPEEKESTSIPLSQAEDNASCDDPEDPAKSPPNSPNSSTRRACCFVLQSWFSKKFMTGCV 60

Query: 59  VLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGST 118
           VLFPVAVTFFITWWF+QFVDGFFSP+Y  LG DIFGLGFITSL FVFL+GVFVSSW+G T
Sbjct: 61  VLFPVAVTFFITWWFIQFVDGFFSPIYSRLGIDIFGLGFITSLSFVFLIGVFVSSWIGGT 120

Query: 119 VFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITST 178
           VFW+GEWFIK+MP VRH+YSASKQISAAISPDQNTT FKEVAIIRHPRVGEYAFGFITST
Sbjct: 121 VFWIGEWFIKQMPLVRHIYSASKQISAAISPDQNTTVFKEVAIIRHPRVGEYAFGFITST 180

Query: 179 VTLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVI 238
           V LQK+N DEELCSVFVPTNHLYIGDI LV+SK++IRPNLSIREGIEIIVSGGMTMPQ+I
Sbjct: 181 VILQKENEDEELCSVFVPTNHLYIGDILLVNSKDVIRPNLSIREGIEIIVSGGMTMPQLI 240

Query: 239 SPIERVARQGERIPLNRI 256
           SP+ERV R  ERI LNRI
Sbjct: 241 SPVERVTRPIERI-LNRI 257

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438477|ref|XP_002278185.1| PREDICTED: uncharacterized protein LOC100266324 [Vitis vinifera] gi|296082545|emb|CBI21550.3| unnamed protein product [Vitis vinifera]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/258 (85%), Positives = 239/258 (92%), Gaps = 4/258 (1%)

Query: 1   MAEEKESTSIPLSQ-AENGGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVV 59
           MAEEKESTS+PLSQ   NGGEDPEDP K+PP S  SSTR+ACCY LQSW+SKKFMTGCVV
Sbjct: 1   MAEEKESTSVPLSQTGGNGGEDPEDPEKTPPASPNSSTRKACCYFLQSWVSKKFMTGCVV 60

Query: 60  LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTV 119
           LFPVAVTFF+TWWF+QFVDGFFSPLYE LG DIFGLGF+TSL+FVF VGVFVSSW+G+TV
Sbjct: 61  LFPVAVTFFVTWWFIQFVDGFFSPLYERLGIDIFGLGFVTSLLFVFFVGVFVSSWMGATV 120

Query: 120 FWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 179
           FW+GEWFIKRMPFV+H+YSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV
Sbjct: 121 FWLGEWFIKRMPFVKHIYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 180

Query: 180 TLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVIS 239
            LQK+N DEELCSVFVPTNHLYIGDIFLV+SKEIIRPNLSIREGIEIIVSGGMTMPQ I+
Sbjct: 181 ILQKENEDEELCSVFVPTNHLYIGDIFLVNSKEIIRPNLSIREGIEIIVSGGMTMPQTIA 240

Query: 240 PIERVARQGERIPLNRIM 257
           P+   AR  +RIPLNRIM
Sbjct: 241 PL---ARPNDRIPLNRIM 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441275|ref|NP_001044917.1| Os01g0867900 [Oryza sativa Japonica Group] gi|20160853|dbj|BAB89792.1| membrane protein COV-like [Oryza sativa Japonica Group] gi|113534448|dbj|BAF06831.1| Os01g0867900 [Oryza sativa Japonica Group] gi|125528506|gb|EAY76620.1| hypothetical protein OsI_04571 [Oryza sativa Indica Group] gi|125572770|gb|EAZ14285.1| hypothetical protein OsJ_04209 [Oryza sativa Japonica Group] gi|215692460|dbj|BAG87880.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/259 (81%), Positives = 234/259 (90%), Gaps = 3/259 (1%)

Query: 1   MAEEKESTSIPLSQAENGGEDPEDPVKSPP--TSSASSTRQACCYVLQSWISKKFMTGCV 58
           MAE++ESTSIPLSQA     DPEDP KSPP  +S  +STR+ACC VLQSW+S+KFMTGCV
Sbjct: 1   MAEKEESTSIPLSQAAEA-VDPEDPAKSPPRPSSPTTSTRKACCAVLQSWVSRKFMTGCV 59

Query: 59  VLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGST 118
           VLFPVAVTFFITWWF+QFVDGFFSPLY  LG DIFGLGF+TSLVF+FLVG+FVSSW+GST
Sbjct: 60  VLFPVAVTFFITWWFIQFVDGFFSPLYAKLGIDIFGLGFLTSLVFIFLVGIFVSSWVGST 119

Query: 119 VFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITST 178
           +FWVGEWFIK+MPFVRH+YSASKQ+S AISPDQNTTAFKEVAIIRHPR+GEYAFGFITST
Sbjct: 120 IFWVGEWFIKKMPFVRHIYSASKQVSTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITST 179

Query: 179 VTLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVI 238
           V LQ D GDEELCSV+VPTNHLYIGDIFLV+S+EIIRPNLSIREGIEIIVSGGMTMPQVI
Sbjct: 180 VVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSIREGIEIIVSGGMTMPQVI 239

Query: 239 SPIERVARQGERIPLNRIM 257
           + +E   R+ + I LNRIM
Sbjct: 240 ASLEPTPRKSQNIRLNRIM 258

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212722772|ref|NP_001131970.1| COV1-like protein isoform 1 [Zea mays] gi|194693066|gb|ACF80617.1| unknown [Zea mays] gi|194693894|gb|ACF81031.1| unknown [Zea mays] gi|195647116|gb|ACG43026.1| COV1-like protein [Zea mays] gi|414879522|tpg|DAA56653.1| TPA: COV1-like protein isoform 1 [Zea mays] gi|414879523|tpg|DAA56654.1| TPA: COV1-like protein isoform 2 [Zea mays] gi|414879524|tpg|DAA56655.1| TPA: COV1-like protein isoform 3 [Zea mays]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/258 (80%), Positives = 234/258 (90%), Gaps = 3/258 (1%)

Query: 1   MAEEKESTSIPLSQAENGGEDPEDPVKSPP--TSSASSTRQACCYVLQSWISKKFMTGCV 58
           MAEEKESTSIPLSQA     DPEDP KSPP  +S  +STR+ACC VLQSW+S+KFMTGCV
Sbjct: 1   MAEEKESTSIPLSQAAEA-VDPEDPAKSPPRPSSPTTSTRKACCAVLQSWVSRKFMTGCV 59

Query: 59  VLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGST 118
           VLFPVAVTFFITWWF+QFVDGFFSPLY  +G DIFGLGF+TS+VF+FLVG+FVSSW+GST
Sbjct: 60  VLFPVAVTFFITWWFIQFVDGFFSPLYAKIGIDIFGLGFLTSMVFIFLVGIFVSSWVGST 119

Query: 119 VFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITST 178
           +FWVGEWFIK+MPFVRH+YSASKQ+S AISPDQNTTAFKEVAIIRHPR+GEYAFGFITST
Sbjct: 120 IFWVGEWFIKKMPFVRHIYSASKQVSTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITST 179

Query: 179 VTLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVI 238
           V LQ D GDEELCSV+VPTNHLYIGDIFLV+S+EIIRPNLSIREGIEIIVSGGMTMPQVI
Sbjct: 180 VVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSIREGIEIIVSGGMTMPQVI 239

Query: 239 SPIERVARQGERIPLNRI 256
           + +E + R+ + I LNR+
Sbjct: 240 ASLEPMPRKSQNIRLNRM 257

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242059357|ref|XP_002458824.1| hypothetical protein SORBIDRAFT_03g041010 [Sorghum bicolor] gi|241930799|gb|EES03944.1| hypothetical protein SORBIDRAFT_03g041010 [Sorghum bicolor]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/258 (81%), Positives = 233/258 (90%), Gaps = 3/258 (1%)

Query: 1   MAEEKESTSIPLSQAENGGEDPEDPVKSPP--TSSASSTRQACCYVLQSWISKKFMTGCV 58
           MAEEKESTSIPLSQA     DPEDP KSPP  +S  +STR+ACC VLQSW+S+KFMTGCV
Sbjct: 1   MAEEKESTSIPLSQAAEA-VDPEDPAKSPPRPSSPTTSTRKACCAVLQSWVSRKFMTGCV 59

Query: 59  VLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGST 118
           VLFPVAVTFFITWWF+QFVDGFFSPLY   G DIFGLGF+TSLVF+FLVG+FVSSW+GST
Sbjct: 60  VLFPVAVTFFITWWFIQFVDGFFSPLYAKFGVDIFGLGFLTSLVFIFLVGLFVSSWVGST 119

Query: 119 VFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITST 178
           +FWVGEWFIK+MPFVRHLYSASKQ+S AISPDQNTTAFKEVAIIRHPR+GEYAFGFITST
Sbjct: 120 IFWVGEWFIKKMPFVRHLYSASKQVSTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITST 179

Query: 179 VTLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVI 238
           V LQ D GDEELCSV+VPTNHLYIGDIFLV+S+EIIRPNLSIREGIEIIVSGGMTMPQVI
Sbjct: 180 VVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSIREGIEIIVSGGMTMPQVI 239

Query: 239 SPIERVARQGERIPLNRI 256
           + +E + R+ + I LNR+
Sbjct: 240 ASLEPMPRKSQSIRLNRM 257

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
TAIR|locus:2018640	261	LCV2 "AT1G43130" [Arabidopsis	0.996	0.980	0.716	1.8e-96
TAIR|locus:2061668	268	COV1 "AT2G20120" [Arabidopsis	0.945	0.906	0.576	1.1e-76
TAIR|locus:2061654	256	LCV1 "AT2G20130" [Arabidopsis	0.945	0.949	0.591	2.4e-76
UNIPROTKB|Q3AEZ4	211	CHY_0429 "Putative uncharacter	0.696	0.848	0.335	1e-20
TIGR_CMR|CHY_0429	211	CHY_0429 "conserved hypothetic	0.696	0.848	0.335	1e-20
UNIPROTKB|Q5LRR3	224	SPO2062 "Uncharacterized prote	0.708	0.812	0.288	1.1e-18
TIGR_CMR|SPO_2062	224	SPO_2062 "conserved hypothetic	0.708	0.812	0.288	1.1e-18
UNIPROTKB|Q0C0Q5	237	HNE_1988 "Putative uncharacter	0.770	0.835	0.273	2.2e-18
UNIPROTKB|Q3Z7T7	214	DET0989 "Putative uncharacteri	0.731	0.878	0.237	1.3e-15
TIGR_CMR|DET_0989	214	DET_0989 "conserved hypothetic	0.731	0.878	0.237	1.3e-15

TAIR|locus:2018640 LCV2 "AT1G43130" [Arabidopsis thaliana (taxid:3702)]

 Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
 Identities = 187/261 (71%), Positives = 212/261 (81%)

Query:     1 MAEEKESTSIPLSQAENGGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVVL 60
             MAE KE+T+  LSQ     +DP+D  KSPP S  SSTR+AC  VLQSW+SKKFMTG VVL
Sbjct:     1 MAEGKEATTSSLSQGLTPHQDPDDAPKSPPNSPNSSTRKACYGVLQSWVSKKFMTGFVVL 60

Query:    61 FPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITXXXXXXXXXXXXXXXXGSTVF 120
             FPVAVTF ITWWF+QFVDGFFSP+YE+LG DIFGLGFIT                GSTVF
Sbjct:    61 FPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGLGFITSVLFTFFVGIFASSWLGSTVF 120

Query:   121 WVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVT 180
             W+GE FI+RMPFV+H+YSASKQIS AISPDQNTTAFKEVAIIRHPR+GEYAFGFITS+VT
Sbjct:   121 WLGEQFIRRMPFVKHIYSASKQISTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSSVT 180

Query:   181 LQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVISP 240
             LQ D+G+EELCSV+VPTNHLYIGD+FLVSS+EIIRPNLSIREGIEIIVS GMTMPQVIS 
Sbjct:   181 LQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLSIREGIEIIVSVGMTMPQVISH 240

Query:   241 IERVARQGE-----RIPLNRI 256
             ++R   +       R+PLNR+
Sbjct:   241 VDRTTNRTPHQHSLRVPLNRL 261

GO:0003674 "molecular_function" evidence=ND

GO:0010222 "stem vascular tissue pattern formation" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2061668 COV1 "AT2G20120" [Arabidopsis thaliana (taxid:3702)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 143/248 (57%), Positives = 182/248 (73%)

Query:     1 MAEEKESTSIPLSQAENGGEDPEDPVKSPPTSSASST-----RQACCYVLQSWISKKFMT 55
             MA  +    + +  A++G +D     K   +SSASS+      +     ++ W SKKFMT
Sbjct:    10 MANRERDRELLIPVADSGDKDDGSSSKPSSSSSASSSSHQSSHETLSLFIRGWASKKFMT 69

Query:    56 GCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITXXXXXXXXXXXXXXXX 115
             GCV+L P+A+TF+ITWWF+ FVDGFFSP+Y  LG ++FG GF+T                
Sbjct:    70 GCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGINVFGFGFLTSIAFIFLVGVFMSSWL 129

Query:   116 GSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFI 175
             G++V  +GEWFIKRMPFVRH+Y+ASKQIS AISPDQNT AFKEVAIIRHPRVGEYAFGFI
Sbjct:   130 GASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKEVAIIRHPRVGEYAFGFI 189

Query:   176 TSTVTLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMP 235
             TSTV LQ    +EELC V+VPTNHLYIGD+ LV+S ++IRPNLS+REGIEI+VSGGM+MP
Sbjct:   190 TSTVVLQNYPTEEELCCVYVPTNHLYIGDLLLVNSNDVIRPNLSVREGIEIVVSGGMSMP 249

Query:   236 QVISPIER 243
             Q++S +++
Sbjct:   250 QILSTVDK 257

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009734 "auxin mediated signaling pathway" evidence=IGI

GO:0010222 "stem vascular tissue pattern formation" evidence=IMP

GO:0016021 "integral to membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2061654 LCV1 "AT2G20130" [Arabidopsis thaliana (taxid:3702)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 146/247 (59%), Positives = 181/247 (73%)

Query:     1 MAEEKESTSIPLSQAENGGEDPEDPVKSPPTSSASSTRQA----CCYVLQSWISKKFMTG 56
             MA  +    + +  A+ G +D     K   +SSASS+ Q+        ++ W SKKFMTG
Sbjct:     1 MANRERDRELLIPVADFGDKDDGSSSKPSSSSSASSSHQSGHETLSLFIRGWASKKFMTG 60

Query:    57 CVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITXXXXXXXXXXXXXXXXG 116
             CV+L P+AVTF+ TWWF+ FVDGFFSP+Y  LG +IFG GF+T                G
Sbjct:    61 CVILLPIAVTFYTTWWFIHFVDGFFSPIYALLGINIFGFGFLTSIAFIFLVGVFMSSWLG 120

Query:   117 STVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFIT 176
             ++V  +GEWFIKRMPFVRH+Y+ASKQIS AISPDQNT AFKEVAIIRHPRVGEYAFGFIT
Sbjct:   121 ASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKEVAIIRHPRVGEYAFGFIT 180

Query:   177 STVTLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQ 236
             STV LQ    +EELC V+VPTNHLYIGDI LV+S ++IRPNLS+REGIEI+VSGGM+MPQ
Sbjct:   181 STVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGIEIVVSGGMSMPQ 240

Query:   237 VISPIER 243
             ++S +++
Sbjct:   241 ILSTLDK 247

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q3AEZ4 CHY_0429 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 64/191 (33%), Positives = 98/191 (51%)

Query:    53 FMTGCVVLFPVAVTFFITWWFVQFVD----GFFSPLYEHLGFDIFGLGFITXXXXXXXXX 108
             F+TG  V+ P A+T +I +    F D    GFF+ ++   G DI GLG +T         
Sbjct:    18 FLTGLAVITPAAITIYILFALFSFFDRPLRGFFAQIF---GIDIPGLGVLTVALLVPIVG 74

Query:   109 XXXXXXXGSTVFWVGEWFIKRMPFVRHLYSASKQ-ISAAISPDQNTTAFKEVAIIRHPRV 167
                    G  +    E    ++P  R LY  SKQ I   + P+++  AFK V + R+P+ 
Sbjct:    75 MLATNFIGRKILKKFEQLFIKIPVTRSLYKTSKQLIETFLHPERD--AFKSVVLARYPKD 132

Query:   168 GEYAFGFITSTVTLQ-KDNGDEELCSVFVPTN-HLYIGDIFLVSSKEIIRPNLSIREGIE 225
             G YA GFIT +   +  +   E+L  VF+PT  +   G +  +  K+II  NLS+ + ++
Sbjct:   133 GSYALGFITGSGFDEINEKTREKLLPVFLPTTPNPTSGWLLYLPEKDIIPLNLSVEDALK 192

Query:   226 IIVSGGMTMPQ 236
             IIVSGG+  P+
Sbjct:   193 IIVSGGIVQPE 203

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0429 CHY_0429 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 64/191 (33%), Positives = 98/191 (51%)

Query:    53 FMTGCVVLFPVAVTFFITWWFVQFVD----GFFSPLYEHLGFDIFGLGFITXXXXXXXXX 108
             F+TG  V+ P A+T +I +    F D    GFF+ ++   G DI GLG +T         
Sbjct:    18 FLTGLAVITPAAITIYILFALFSFFDRPLRGFFAQIF---GIDIPGLGVLTVALLVPIVG 74

Query:   109 XXXXXXXGSTVFWVGEWFIKRMPFVRHLYSASKQ-ISAAISPDQNTTAFKEVAIIRHPRV 167
                    G  +    E    ++P  R LY  SKQ I   + P+++  AFK V + R+P+ 
Sbjct:    75 MLATNFIGRKILKKFEQLFIKIPVTRSLYKTSKQLIETFLHPERD--AFKSVVLARYPKD 132

Query:   168 GEYAFGFITSTVTLQ-KDNGDEELCSVFVPTN-HLYIGDIFLVSSKEIIRPNLSIREGIE 225
             G YA GFIT +   +  +   E+L  VF+PT  +   G +  +  K+II  NLS+ + ++
Sbjct:   133 GSYALGFITGSGFDEINEKTREKLLPVFLPTTPNPTSGWLLYLPEKDIIPLNLSVEDALK 192

Query:   226 IIVSGGMTMPQ 236
             IIVSGG+  P+
Sbjct:   193 IIVSGGIVQPE 203

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LRR3 SPO2062 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 56/194 (28%), Positives = 96/194 (49%)

Query:    53 FMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEH-------LGFDIFGLGFITXXXXXX 105
             F+TG VV+ PV +T ++ W  V +VD F  PL  H       +G ++ G+G I       
Sbjct:    24 FLTGIVVIAPVGLTIWLFWSVVGWVDSFVLPLVPHQFRPEQYIGINLRGVGVIFLLVFTI 83

Query:   106 XXXXXXXXXXGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHP 165
                       G ++    E  + RMP VR +YS  KQIS  +   Q   +F++  +I++P
Sbjct:    84 VVGWIAKGIIGRSLIQYAEGVVDRMPVVRSVYSGIKQISETVFA-QTERSFEQACLIQYP 142

Query:   166 RVGEYAFGFITSTV---TLQKDNGDEELCSVFVPTN-HLYIGDIFLVSSKEIIRPNLSIR 221
             R G +A GF+++T       K      L SVFVPT  +   G +     +++I  ++++ 
Sbjct:   143 RRGIWAIGFVSTTAKGEVADKAETGGRLMSVFVPTTPNPTSGFLLYFPEEDVIILDMTVE 202

Query:   222 EGIEIIVSGGMTMP 235
             +  ++++S G+  P
Sbjct:   203 DAAKLVISAGLVYP 216

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2062 SPO_2062 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 56/194 (28%), Positives = 96/194 (49%)

Query:    53 FMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEH-------LGFDIFGLGFITXXXXXX 105
             F+TG VV+ PV +T ++ W  V +VD F  PL  H       +G ++ G+G I       
Sbjct:    24 FLTGIVVIAPVGLTIWLFWSVVGWVDSFVLPLVPHQFRPEQYIGINLRGVGVIFLLVFTI 83

Query:   106 XXXXXXXXXXGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHP 165
                       G ++    E  + RMP VR +YS  KQIS  +   Q   +F++  +I++P
Sbjct:    84 VVGWIAKGIIGRSLIQYAEGVVDRMPVVRSVYSGIKQISETVFA-QTERSFEQACLIQYP 142

Query:   166 RVGEYAFGFITSTV---TLQKDNGDEELCSVFVPTN-HLYIGDIFLVSSKEIIRPNLSIR 221
             R G +A GF+++T       K      L SVFVPT  +   G +     +++I  ++++ 
Sbjct:   143 RRGIWAIGFVSTTAKGEVADKAETGGRLMSVFVPTTPNPTSGFLLYFPEEDVIILDMTVE 202

Query:   222 EGIEIIVSGGMTMP 235
             +  ++++S G+  P
Sbjct:   203 DAAKLVISAGLVYP 216

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0C0Q5 HNE_1988 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 58/212 (27%), Positives = 99/212 (46%)

Query:    45 LQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYE-------HLGFDIFGLGF 97
             L +W+  +F+ G ++  P+  TF I  + +  +D    PL         +L + + G G 
Sbjct:    22 LLAWLRARFVAGMLIALPIVATFVILEFLINLIDSRVVPLLPPSLRPETYLDYAVPGFGL 81

Query:    98 ITXXXXXXXXXXXXXXXXGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTA-- 155
             I                 G     + +  + R+P VR +YS  KQI       QN TA  
Sbjct:    82 IILILFLTLVGAVATNFLGKFFVDLTDRVLTRVPVVRSVYSVFKQIRDVF---QNNTAGQ 138

Query:   156 FKEVAIIRHPRVGEYAFGFITSTVTLQ-KDNGDEELCSVFVPTN-HLYIGDIFLVSSKEI 213
             +KEVA++ +PR G +  GF+   +  + +    E    +FVPT  +   G +  V+  +I
Sbjct:   139 YKEVAMVEYPREGSWVIGFVAGPIKGEMRQRLGENFIGIFVPTTPNPTSGFLLYVAEAKI 198

Query:   214 IRPNLSIREGIEIIVSGGMTMPQVISPIERVA 245
             +R ++S+ EG +II SGG+ +P    P + +A
Sbjct:   199 VRLDMSVEEGAKIIFSGGLVVPDYPLPGQPLA 230

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z7T7 DET0989 "Putative uncharacterized protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 47/198 (23%), Positives = 93/198 (46%)

Query:    49 ISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIF--GLGFITXXXXXXX 106
             +  +F+TG   + P+     +  W    +DG   P+ E   F+ +  GLG +        
Sbjct:    12 LRNRFLTGLAFVLPIGAALGLLIWVFNIIDGLLKPVIEFF-FNWYFPGLGLLVTLVLIYL 70

Query:   107 XXXXXXXXXGSTVF-WVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHP 165
                      G  +  WV +  +K +P    +Y+++KQ+   +    N  +FKE  ++  P
Sbjct:    71 VGLILSNYFGKQILGWVDKILVK-VPIFNQVYNSAKQVIETLGVS-NKVSFKEAVMVEFP 128

Query:   166 RVGEYAFGFITSTVTLQKDNGDEELCSVFVPTN-HLYIGDIFLVSSKEIIRPNLSIREGI 224
             R G ++  FIT+  T   ++  E+L  V+VP + +   G + L+   +I R N+S+ + +
Sbjct:   129 RTGMHSLAFITNETT---NSAGEKLYLVYVPGSPNPTSGFLELLRENQIERVNVSVEDAM 185

Query:   225 EIIVSGGMTMPQVISPIE 242
             + ++S G+  P  +  I+
Sbjct:   186 KTLISCGLVFPDNVQAID 203

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0989 DET_0989 "conserved hypothetical protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 47/198 (23%), Positives = 93/198 (46%)

Query:    49 ISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIF--GLGFITXXXXXXX 106
             +  +F+TG   + P+     +  W    +DG   P+ E   F+ +  GLG +        
Sbjct:    12 LRNRFLTGLAFVLPIGAALGLLIWVFNIIDGLLKPVIEFF-FNWYFPGLGLLVTLVLIYL 70

Query:   107 XXXXXXXXXGSTVF-WVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHP 165
                      G  +  WV +  +K +P    +Y+++KQ+   +    N  +FKE  ++  P
Sbjct:    71 VGLILSNYFGKQILGWVDKILVK-VPIFNQVYNSAKQVIETLGVS-NKVSFKEAVMVEFP 128

Query:   166 RVGEYAFGFITSTVTLQKDNGDEELCSVFVPTN-HLYIGDIFLVSSKEIIRPNLSIREGI 224
             R G ++  FIT+  T   ++  E+L  V+VP + +   G + L+   +I R N+S+ + +
Sbjct:   129 RTGMHSLAFITNETT---NSAGEKLYLVYVPGSPNPTSGFLELLRENQIERVNVSVEDAM 185

Query:   225 EIIVSGGMTMPQVISPIE 242
             + ++S G+  P  +  I+
Sbjct:   186 KTLISCGLVFPDNVQAID 203

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019346001 SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (255 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	257
COG2928	222	COG2928, COG2928, Uncharacterized conserved protei	3e-31
pfam04367	108	pfam04367, DUF502, Protein of unknown function (DU	7e-28

>gnl|CDD|225480 COG2928, COG2928, Uncharacterized conserved protein [Function unknown]

 Score =  114 bits (288), Expect = 3e-31
 Identities = 58/203 (28%), Positives = 109/203 (53%), Gaps = 10/203 (4%)

Query: 51  KKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPL-------YEHLGFDIFGLGFITSLVF 103
           K F+TG +VL P+A+T ++  W    +D F  PL         +  F+I GLG I +++ 
Sbjct: 8   KYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIIL 67

Query: 104 VFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIR 163
           +FL+G    + +G ++  +G+  ++R+P V+ +Y ++KQ+   +  DQ + +FK+V ++ 
Sbjct: 68  IFLLGFLARNMIGRSLLSLGDSLLRRIPLVKSIYKSAKQVVETLLSDQ-SGSFKQVVLVE 126

Query: 164 HPRVGEYAFGFITSTV-TLQKDNGDEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIR 221
            PR G +A  F+T       K+     + +VFVPT         L+  KE I P ++++ 
Sbjct: 127 FPRRGIWAIAFVTGEKAGELKEKEGRPMVAVFVPTTPNPTSGFLLLVPKEDIVPLDMTVE 186

Query: 222 EGIEIIVSGGMTMPQVISPIERV 244
           + ++ I+SGG+  P  +   +  
Sbjct: 187 DALKYIISGGVVAPDSLPAKDLE 209

Length = 222

>gnl|CDD|218047 pfam04367, DUF502, Protein of unknown function (DUF502)

 Score =  102 bits (257), Expect = 7e-28
 Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 2/102 (1%)

Query: 97  FITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAF 156
            I +L+ +FLVG+   +++G  +  +GE  + R+P VR +YS+ KQ+   +  D+   +F
Sbjct: 1   LILTLLLIFLVGLLARNFIGRWLLSLGERLLNRIPLVRSIYSSVKQLVETLLGDKK-KSF 59

Query: 157 KEVAIIRHPRVGEYAFGFITSTVTLQKDNG-DEELCSVFVPT 197
           ++V ++ +PR G +A GF+T     +      E+L +VFVPT
Sbjct: 60  RKVVLVEYPRPGLWAIGFVTGEDGGELPERLGEDLVAVFVPT 101

Predicted to be an integral membrane protein. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
COG2928	222	Uncharacterized conserved protein [Function unknow	100.0
PF04367	108	DUF502: Protein of unknown function (DUF502); Inte	99.97
cd01277	103	HINT_subgroup HINT (histidine triad nucleotide-bin	90.07
TIGR02120	399	GspF general secretion pathway protein F. This mem	86.98
cd01275	126	FHIT FHIT (fragile histidine family): FHIT protein	86.85
PRK12772	609	bifunctional flagellar biosynthesis protein FliR/F	86.51
PRK15350	88	type III secretion system protein SsaS; Provisiona	85.64
cd00468	86	HIT_like HIT family: HIT (Histidine triad) protein	85.61
PRK05700	89	fliQ flagellar biosynthesis protein FliQ; Validate	83.93
COG1459	397	PulF Type II secretory pathway, component PulF [Ce	83.15
PF01230	98	HIT: HIT domain; InterPro: IPR001310 The Histidine	82.45
PRK09824	627	PTS system beta-glucoside-specific transporter sub	81.7
PRK06010	88	fliQ flagellar biosynthesis protein FliQ; Reviewed	81.52
TIGR01402	88	fliQ flagellar biosynthetic protein FliQ. This mod	80.76
PRK10573	399	type IV pilin biogenesis protein; Provisional	80.46

>COG2928 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.4e-56  Score=391.40  Aligned_cols=194  Identities=29%  Similarity=0.666  Sum_probs=175.7

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-------cccccchhhHHHHHHHHHHHHHHHHHhhhhhHH
Q 025129           47 SWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYE-------HLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTV  119 (257)
Q Consensus        47 ~~i~~~Fl~GLlvlLPl~lTi~vl~wl~~~vd~~l~pl~~-------~l~~~ipglgll~~llli~liG~la~~~ig~~l  119 (257)
                      +.+||+|++||++++|+++|+|+++|+++++|+++.|.+.       +++.+++|+|+++++++++++|++++|.+||++
T Consensus         4 ~~lk~~fltGLlvllPlaiT~~vv~~i~~~l~~~~~~~lp~~~~~~~~~~~~i~~lg~il~iili~l~G~l~~~~ig~~l   83 (222)
T COG2928           4 KRLKKYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIILIFLLGFLARNMIGRSL   83 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhchhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            3478889999999999999999999999999999998552       235668999999999999999999999999999


Q ss_pred             HHHHHhhhchhceehhhHHHHHHHHHHhCCCCCCCCcCcEEEEEeCCCCeeEEEEEccccccc-cCCCCCCeEEEEecCC
Q 025129          120 FWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVTLQ-KDNGDEELCSVFVPTN  198 (257)
Q Consensus       120 ~~~~e~ll~rIPlVksIY~siKq~~~~f~~~~~~~~f~~VVlVe~P~~g~~~iGFvT~~~~~~-~~~~~~~~v~VfvPts  198 (257)
                      ++++|++|+|||++|+||+++||+++++.+++ ..+||+||+||||++|+|++||+|++...+ ....++++++||+||+
T Consensus        84 ~~~~d~~L~RiPlv~~IY~s~kqi~etll~~~-~~sfk~vvlVefP~~G~~~i~fvtg~~~~e~~~~~~~~~v~VfvPTT  162 (222)
T COG2928          84 LSLGDSLLRRIPLVKSIYKSAKQVVETLLSDQ-SGSFKQVVLVEFPRRGIWAIAFVTGEKAGELKEKEGRPMVAVFVPTT  162 (222)
T ss_pred             HHHHHHHHccCccHHHHHHHHHHHHHHHHhcC-CccceeeEEEECCCCCcEEEEEeccCCCcchhcccCCceEEEEcCCC
Confidence            99999999999999999999999999999874 458999999999999999999999986432 2244579999999999


Q ss_pred             C-CCCceEEEEecCCeecCCCCHHHHHHHHhhccccCCCCCCcc
Q 025129          199 H-LYIGDIFLVSSKEIIRPNLSIREGIEIIVSGGMTMPQVISPI  241 (257)
Q Consensus       199 P-ptsG~l~~Vp~~~V~~lDmsvEeAmk~iiS~Gv~~p~~~~~~  241 (257)
                      | |||||+++||+||++++|||+|||+|+++|||++.|+.....
T Consensus       163 PNPTsGfl~~Vpkedi~~ldmtvEda~k~iIS~G~v~p~~~~~~  206 (222)
T COG2928         163 PNPTSGFLLLVPKEDIVPLDMTVEDALKYIISGGVVAPDSLPAK  206 (222)
T ss_pred             CCCCcceEEEEEHHHceeccccHHHHhheeeeccccCCCccccc
Confidence            9 689999999999999999999999999999999999865443

>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins

Probab=99.97  E-value=4.6e-31  Score=210.81  Aligned_cols=106  Identities=32%  Similarity=0.631  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhchhceehhhHHHHHHHHHHhCCCCCCCCcCcEEEEEeCCCCeeEEEEEc
Q 025129           97 FITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFIT  176 (257)
Q Consensus        97 ll~~llli~liG~la~~~ig~~l~~~~e~ll~rIPlVksIY~siKq~~~~f~~~~~~~~f~~VVlVe~P~~g~~~iGFvT  176 (257)
                      +++++++||++|+++++++|+++++++|+++.|||+||+||+++||++++|+++++ +.|++||+||||++|+|++||+|
T Consensus         1 ~l~~l~~i~~iG~l~~~~~g~~l~~~~e~ll~riP~v~~iY~~~k~~~~~~~~~~~-~~f~~vVlV~~p~~g~~~igFvT   79 (108)
T PF04367_consen    1 FLILLLLIFLIGLLARNYFGKWLLNWLERLLQRIPLVKSIYSSIKQLVESFSGDKK-KSFKKVVLVEFPRPGMYVIGFVT   79 (108)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhhccc-ccCCeEEEEEecCCCcEEEEEEe
Confidence            35688999999999999999999999999999999999999999999999998754 45999999999999999999999


Q ss_pred             cccccc-cCCCCCCeEEEEecCCCC-CCc
Q 025129          177 STVTLQ-KDNGDEELCSVFVPTNHL-YIG  203 (257)
Q Consensus       177 ~~~~~~-~~~~~~~~v~VfvPtsPp-tsG  203 (257)
                      ++...+ ....++++++||+||||| |||
T Consensus        80 ~~~~~~~~~~~~~~~v~VfvPtsPnPtsG  108 (108)
T PF04367_consen   80 GEDPGELPGKTGEEMVAVFVPTSPNPTSG  108 (108)
T ss_pred             ccCcchhhccCCCCEEEEEeCCCCCCCCC
Confidence            987532 222346999999999995 787

>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides

Probab=90.07  E-value=0.6  Score=35.58  Aligned_cols=41  Identities=20%  Similarity=0.282  Sum_probs=35.1

Q ss_pred             CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHH
Q 025129          187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEII  227 (257)
Q Consensus       187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~i  227 (257)
                      .++...+|+|-.|..-|.++++|++.+..+ |++.||...+.
T Consensus        19 e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~   60 (103)
T cd01277          19 EDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELI   60 (103)
T ss_pred             eCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHH
Confidence            467889999999999999999999999766 99998865554

This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.

>TIGR02120 GspF general secretion pathway protein F

Probab=86.98  E-value=7.8  Score=36.94  Aligned_cols=23  Identities=13%  Similarity=0.107  Sum_probs=18.5

Q ss_pred             HHHHHHHhhhchhceehhhHHHH
Q 025129          118 TVFWVGEWFIKRMPFVRHLYSAS  140 (257)
Q Consensus       118 ~l~~~~e~ll~rIPlVksIY~si  140 (257)
                      +.-.+.|+++.|+|+++++|...
T Consensus       242 ~~r~~~~~~l~kiP~~g~~~~~~  264 (399)
T TIGR02120       242 AFRLRFDRRLLRLPVIGRLVRGL  264 (399)
T ss_pred             HHHHHHHHHHhcccchHHHHHHH
Confidence            34567899999999999998643

This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.

>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases

Probab=86.85  E-value=1.3  Score=35.56  Aligned_cols=44  Identities=14%  Similarity=0.124  Sum_probs=36.1

Q ss_pred             CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHHhhc
Q 025129          187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEIIVSG  230 (257)
Q Consensus       187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~iiS~  230 (257)
                      .++...+|+|-.|.+.|.++++|++.+..+ |++-||...+.-..
T Consensus        19 e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~   63 (126)
T cd01275          19 RTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLV   63 (126)
T ss_pred             eCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHH
Confidence            367889999999988999999999999766 99988876554433

Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.

>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional

Probab=86.51  E-value=10  Score=38.97  Aligned_cols=42  Identities=12%  Similarity=0.186  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025129           40 ACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFF   81 (257)
Q Consensus        40 ~~~~~~~~~i~~~Fl~GLlvlLPl~lTi~vl~wl~~~vd~~l   81 (257)
                      .....+.+++.+.|..|+..-+|+++...++.-.++++....
T Consensus       163 ~~~~~~~~~~~~~F~~al~lAaP~i~~lll~~~~lGllsR~a  204 (609)
T PRK12772        163 ESIMHVINVFIQYFYIGIKIAIPIVLIILITDLTLGLISRTV  204 (609)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            334556677889999999999999999999999998887765

>PRK15350 type III secretion system protein SsaS; Provisional

Probab=85.64  E-value=15  Score=28.60  Aligned_cols=78  Identities=13%  Similarity=0.212  Sum_probs=49.6

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhh
Q 025129           48 WISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFI  127 (257)
Q Consensus        48 ~i~~~Fl~GLlvlLPl~lTi~vl~wl~~~vd~~l~pl~~~l~~~ipglgll~~llli~liG~la~~~ig~~l~~~~e~ll  127 (257)
                      ..++.+...+++..|+.+.-.++.-+++++...- .+-+      .-+.++-=++.++++-++.-.|..+.+.++.++++
T Consensus         9 l~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~T-QIQE------qTLsFvPKliav~~~l~~~gpWm~~~l~~ft~~if   81 (88)
T PRK15350          9 FVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALT-QIQD------QTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQIM   81 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566788899999999998888887766553322 1111      11233322333334444455667788889999999


Q ss_pred             chhce
Q 025129          128 KRMPF  132 (257)
Q Consensus       128 ~rIPl  132 (257)
                      .+||-
T Consensus        82 ~~i~~   86 (88)
T PRK15350         82 LRIGE   86 (88)
T ss_pred             Hhhhh
Confidence            99884

>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides

Probab=85.61  E-value=1.4  Score=32.21  Aligned_cols=41  Identities=15%  Similarity=0.228  Sum_probs=33.3

Q ss_pred             CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHH
Q 025129          187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEII  227 (257)
Q Consensus       187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~i  227 (257)
                      +++...+|+|-.|...|.++++|++.+..+ |++.|+...+.
T Consensus         3 e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~   44 (86)
T cd00468           3 DDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLV   44 (86)
T ss_pred             ecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHH
Confidence            367889999999988999999999999665 88887654443

On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.

>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated

Probab=83.93  E-value=18  Score=28.15  Aligned_cols=79  Identities=14%  Similarity=0.254  Sum_probs=51.0

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhh
Q 025129           47 SWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWF  126 (257)
Q Consensus        47 ~~i~~~Fl~GLlvlLPl~lTi~vl~wl~~~vd~~l~pl~~~l~~~ipglgll~~llli~liG~la~~~ig~~l~~~~e~l  126 (257)
                      ...++.+...++...|+.+.-.++.-+.+++...- .+-+      .-++++-=++.++++=++.-.|.++.+.++.+++
T Consensus         8 ~l~~~al~~~l~ls~P~l~~alvVGlvIsi~QA~T-QIqE------qTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~i   80 (89)
T PRK05700          8 DLFREAMKVALMLAAPLLLVALVVGLVVSIFQAAT-QINE------QTLSFIPKILAVLLTLIIAGPWMLNTLLDYTRTL   80 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788899999999998888887666553322 1111      1223333233334444445567788899999999


Q ss_pred             hchhce
Q 025129          127 IKRMPF  132 (257)
Q Consensus       127 l~rIPl  132 (257)
                      +.+||-
T Consensus        81 f~~i~~   86 (89)
T PRK05700         81 FSNIPT   86 (89)
T ss_pred             HHHHHh
Confidence            999985

>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=83.15  E-value=5.7  Score=38.72  Aligned_cols=23  Identities=13%  Similarity=0.138  Sum_probs=18.5

Q ss_pred             hHHHHHHHhhhchhceehhhHHH
Q 025129          117 STVFWVGEWFIKRMPFVRHLYSA  139 (257)
Q Consensus       117 ~~l~~~~e~ll~rIPlVksIY~s  139 (257)
                      .+.-.+.|+++-|+|+++.+...
T Consensus       238 ~~~r~~~~~~llrlP~~g~l~~~  260 (397)
T COG1459         238 PAGRRRLDRLLLRLPLFGKLVRK  260 (397)
T ss_pred             hHHHHHHHhHHhcCCcHHHHHHH
Confidence            34556799999999999998763

>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []

Probab=82.45  E-value=1.8  Score=32.93  Aligned_cols=41  Identities=12%  Similarity=0.322  Sum_probs=33.8

Q ss_pred             CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHH
Q 025129          187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEII  227 (257)
Q Consensus       187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~i  227 (257)
                      .++.+.+|++..|..-|.++++|++.+..+ |++.++...+.
T Consensus        11 e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~   52 (98)
T PF01230_consen   11 EDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELM   52 (98)
T ss_dssp             E-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHH
T ss_pred             ECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHH
Confidence            357788899998988999999999999887 88877766654

Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional

Probab=81.70  E-value=7.7  Score=40.10  Aligned_cols=69  Identities=12%  Similarity=0.312  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhcccccchhhHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHhhhchhc
Q 025129           60 LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITS-LVFVFLVGVFVSSWLGSTVFWVGEWFIKRMP  131 (257)
Q Consensus        60 lLPl~lTi~vl~wl~~~vd~~l~pl~~~l~~~ipglgll~~-llli~liG~la~~~ig~~l~~~~e~ll~rIP  131 (257)
                      ++|+++++|+..|+-+++++++...++.+  -.|.+.++++ .+.++++|=+.. ++|..+-..+.++...-|
T Consensus       219 ViPiil~v~~~s~iEk~l~K~iP~~l~~i--~~P~ltlli~~pl~l~viGPig~-~i~~~l~~~i~~l~~~~~  288 (627)
T PRK09824        219 VIPIIFSAWLCSILERRLNAWLPSAIKNF--FTPLLCLMVIVPLTFLLIGPLAT-WLSELLAAGYQWLYQAVP  288 (627)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHhhch
Confidence            79999999999999999988776555442  1344444332 244444444332 444444444444444433

>PRK06010 fliQ flagellar biosynthesis protein FliQ; Reviewed

Probab=81.52  E-value=23  Score=27.58  Aligned_cols=79  Identities=13%  Similarity=0.197  Sum_probs=49.0

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhh
Q 025129           47 SWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWF  126 (257)
Q Consensus        47 ~~i~~~Fl~GLlvlLPl~lTi~vl~wl~~~vd~~l~pl~~~l~~~ipglgll~~llli~liG~la~~~ig~~l~~~~e~l  126 (257)
                      ...++.+...+++.+|+.+.-.++.-+++.+...- .+-+      .-+.++-=++.++++=++.-.|..+.+.++.+++
T Consensus         8 ~l~~~al~~~l~~s~P~L~~alvVGliIsi~QA~T-QIqE------qTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~i   80 (88)
T PRK06010          8 DIVRDAIWTVLVASGPAVLAAMVVGVAIALFQALT-QIQE------MTLTFVPKIVAIFVTLLLTLPFMGAQISAFTLLI   80 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788899999999998888887666553322 1111      1122222223333333444456777888899999


Q ss_pred             hchhce
Q 025129          127 IKRMPF  132 (257)
Q Consensus       127 l~rIPl  132 (257)
                      +.+||-
T Consensus        81 f~~i~~   86 (88)
T PRK06010         81 YSRIAG   86 (88)
T ss_pred             HHhhcc
Confidence            999884

>TIGR01402 fliQ flagellar biosynthetic protein FliQ

Probab=80.76  E-value=25  Score=27.41  Aligned_cols=78  Identities=13%  Similarity=0.236  Sum_probs=50.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhh
Q 025129           48 WISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFI  127 (257)
Q Consensus        48 ~i~~~Fl~GLlvlLPl~lTi~vl~wl~~~vd~~l~pl~~~l~~~ipglgll~~llli~liG~la~~~ig~~l~~~~e~ll  127 (257)
                      ..++.+...+.+..|+.+.-.++.-+.+.+...- -+-+      .-+.++-=++.++++-++.-.|.++.+.++.++++
T Consensus         9 l~~~al~~~l~~s~P~l~~alvVGlvIsi~QA~T-QIqE------qTLsFvPKliav~~~l~~~gpWm~~~l~~f~~~~f   81 (88)
T TIGR01402         9 LGREAIWLTLLLSAPVLLVALVVGLVISIFQAAT-QIQE------QTLSFIPKIIAILLALALLGPWMLTKLLDFTREIF   81 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566688899999999988888876666553322 1111      12233333333444444455677788889999999


Q ss_pred             chhce
Q 025129          128 KRMPF  132 (257)
Q Consensus       128 ~rIPl  132 (257)
                      .+||-
T Consensus        82 ~~i~~   86 (88)
T TIGR01402        82 QRIPQ   86 (88)
T ss_pred             HHhhh
Confidence            99986

This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems.

>PRK10573 type IV pilin biogenesis protein; Provisional

Probab=80.46  E-value=23  Score=33.84  Aligned_cols=19  Identities=21%  Similarity=0.317  Sum_probs=15.7

Q ss_pred             HHHHHhhhchhceehhhHH
Q 025129          120 FWVGEWFIKRMPFVRHLYS  138 (257)
Q Consensus       120 ~~~~e~ll~rIPlVksIY~  138 (257)
                      -.+.++++.|+|+++.+|.
T Consensus       243 ~~~~~~~l~~iP~~g~~~~  261 (399)
T PRK10573        243 QIREQRLLLRLPLVGSLIR  261 (399)
T ss_pred             HHHHHHHHhcCCeeccccc
Confidence            3457899999999998775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
3p0t_A	138	Uncharacterized protein; ssgcid, HIT-like protein,	80.55

>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}

Probab=80.55  E-value=2.1  Score=33.53  Aligned_cols=41  Identities=12%  Similarity=0.201  Sum_probs=34.6

Q ss_pred             CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHH
Q 025129          187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEII  227 (257)
Q Consensus       187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~i  227 (257)
                      .++.+.+|++-.|.+-|.++++|++.+..+ |++.|+...+.
T Consensus        24 e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~   65 (138)
T 3p0t_A           24 EDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVM   65 (138)
T ss_dssp             ECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHH
T ss_pred             eCCCEEEEecCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHH
Confidence            367889999999988999999999998776 99988876553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00